>gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone
              OSJNBa0072P02, complete sequence
          Length = 157488

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 11     ggggaggcgcggctggcggcg 31
              |||||||||||||||||||||
Sbjct: 130464 ggggaggcgcggctggcggcg 130444

>ref|XM_467635.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 909

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 16 ggcgcggctggcggcgacggt 36
          |||||||||||||||||||||
Sbjct: 67 ggcgcggctggcggcgacggt 87

>gb|AC137595.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
            OSJNBa0094K23, complete sequence
          Length = 167482

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 11   ggggaggcgcggctggcggcg 31
            |||||||||||||||||||||
Sbjct: 6574 ggggaggcgcggctggcggcg 6554

>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 145    gtcgctggcggcgaagagccg 165
              |||||||||||||||||||||
Sbjct: 189825 gtcgctggcggcgaagagccg 189805

>gb|CP000075.1| Pseudomonas syringae pv. syringae B728a, complete genome
          Length = 6093698

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 133     gccgcgttcgacgtcgctggc 153
               |||||||||||||||||||||
Sbjct: 2269719 gccgcgttcgacgtcgctggc 2269699

>emb|AL139010.29| Human DNA sequence from clone RP11-444M10 on chromosome 1 Contains the 3'
              end of a novel gene, a novel gene and the KIRREL gene for
              kin of IRRE like (Drosophila), complete sequence
          Length = 189477

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 97     acaactcaggagcagcgatctctcc 121
              ||||||||||||||| |||||||||
Sbjct: 125045 acaactcaggagcagggatctctcc 125021

>emb|AL023806.1|HS466P17 Human DNA sequence from clone RP3-466P17 on chromosome 6q24 Contains
             the 5' end of the EPM2A gene for progressive myoclonus
             type 2 epilepsy (Lafora disease) protein (laforin) and a
             CpG island, complete sequence
          Length = 149963

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 13    ggaggcgcggctggcggcgac 33
             |||||||||||||||||||||
Sbjct: 60169 ggaggcgcggctggcggcgac 60149

>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 145     gtcgctggcggcgaagagccg 165
               |||||||||||||||||||||
Sbjct: 1585333 gtcgctggcggcgaagagccg 1585313

>emb|AL939124.1|SCO939124 Streptomyces coelicolor A3(2) complete genome; segment 21/29
          Length = 308050

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 25     ggcggcgacggtgcgggcggc 45
              |||||||||||||||||||||
Sbjct: 241807 ggcggcgacggtgcgggcggc 241787

>gb|AE012375.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 283
            of 460 of the complete genome
          Length = 11056

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 41   gcggcgctcatcggctggctc 61
            |||||||||||||||||||||
Sbjct: 2376 gcggcgctcatcggctggctc 2396

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 41      gcggcgctcatcggctggctc 61
               |||||||||||||||||||||
Sbjct: 1792037 gcggcgctcatcggctggctc 1792017



 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 22      gctggcggcgacggtgcggg 41
               ||||||||||||||||||||
Sbjct: 1194810 gctggcggcgacggtgcggg 1194791

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 11       ggggaggcgcggctggcggcg 31
                |||||||||||||||||||||
Sbjct: 19411238 ggggaggcgcggctggcggcg 19411218

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                     
Query: 46       gctcatcggctggctcttcttctgcctcaccgtcgcc 82
                ||||| ||||||||||| || ||||||| ||||||||
Sbjct: 27770521 gctcagcggctggctctcctcctgcctcgccgtcgcc 27770485

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 16       ggcgcggctggcggcgacggt 36
                |||||||||||||||||||||
Sbjct: 30554754 ggcgcggctggcggcgacggt 30554734

>gb|AF454494.1| Homo sapiens truncated laforin isoform (EPM2A) mRNA, partial cds,
           alternatively spliced
          Length = 849

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 13  ggaggcgcggctggcggcgac 33
           |||||||||||||||||||||
Sbjct: 429 ggaggcgcggctggcggcgac 409

>dbj|AP004378.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0496C02
          Length = 148419

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                  
Query: 46    gctcatcggctggctcttcttctgcctcaccgtcgcc 82
             ||||| ||||||||||| || ||||||| ||||||||
Sbjct: 62900 gctcagcggctggctctcctcctgcctcgccgtcgcc 62864

>dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1477_F01
          Length = 158792

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                   
Query: 46     gctcatcggctggctcttcttctgcctcaccgtcgcc 82
              ||||| ||||||||||| || ||||||| ||||||||
Sbjct: 149623 gctcagcggctggctctcctcctgcctcgccgtcgcc 149587

>dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0643A10
          Length = 187931

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 16    ggcgcggctggcggcgacggt 36
             |||||||||||||||||||||
Sbjct: 66762 ggcgcggctggcggcgacggt 66742

>dbj|AK121806.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033097L10, full
           insert sequence
          Length = 2069

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 11  ggggaggcgcggctggcggcg 31
           |||||||||||||||||||||
Sbjct: 388 ggggaggcgcggctggcggcg 408

>dbj|AK120788.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023011I05, full
           insert sequence
          Length = 666

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 33/37 (89%)
 Strand = Plus / Plus

                                                
Query: 46  gctcatcggctggctcttcttctgcctcaccgtcgcc 82
           ||||| ||||||||||| || ||||||| ||||||||
Sbjct: 397 gctcagcggctggctctcctcctgcctcgccgtcgcc 433

>dbj|AK111722.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023029C05,
          full insert sequence
          Length = 909

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 16 ggcgcggctggcggcgacggt 36
          |||||||||||||||||||||
Sbjct: 67 ggcgcggctggcggcgacggt 87

>gb|DQ211984.1| Toxoplasma gondii eukaryotic translation initiation factor 3 p42
            subunit gene, complete cds
          Length = 7920

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 16   ggcgcggctggcggcgacgg 35
            ||||||||||||||||||||
Sbjct: 5438 ggcgcggctggcggcgacgg 5457

>gb|AC121137.18| Mus musculus chromosome 14, clone RP23-406K12, complete sequence
          Length = 164557

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 587    agattcacaatatcagatat 606
              ||||||||||||||||||||
Sbjct: 163095 agattcacaatatcagatat 163076

>gb|AY597283.1| Pseudomonas viridiflava strain RMX3.1b pathogenicity island
             PAI-Region-2, partial sequence
          Length = 39281

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 168   tctgcgtctacgaagtgcca 187
             ||||||||||||||||||||
Sbjct: 10382 tctgcgtctacgaagtgcca 10401

>gb|AY597282.1| Pseudomonas viridiflava strain RMX23.1a pathogenicity island
            PAI-Region-2, partial sequence
          Length = 39285

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 168  tctgcgtctacgaagtgcca 187
            ||||||||||||||||||||
Sbjct: 9940 tctgcgtctacgaagtgcca 9959

>gb|AY597281.1| Pseudomonas viridiflava strain ME3.1b pathogenicity island
             PAI-Region-2, partial sequence
          Length = 39776

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 168   tctgcgtctacgaagtgcca 187
             ||||||||||||||||||||
Sbjct: 10444 tctgcgtctacgaagtgcca 10463

>emb|AL138878.10| Human DNA sequence from clone RP11-288G3 on chromosome 6 Contains the
             3' end of the RIOK1 gene for RIO kinase 1 (yeast), a
             hetergeneous riboprotein L (HNRNP L) pseudogene, a
             ribosomal protein S26 pseudogene and a isocitrate
             dehydrogenase 1 (IDH1) pseudogene, complete sequence
          Length = 128320

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 329   gcatgttgttcctttgctca 348
             ||||||||||||||||||||
Sbjct: 87695 gcatgttgttcctttgctca 87714

>gb|AE012433.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 341
            of 460 of the complete genome
          Length = 11210

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 22   gctggcggcgacggtgcggg 41
            ||||||||||||||||||||
Sbjct: 9011 gctggcggcgacggtgcggg 9030

>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 16      ggcgcggctggcggcgacgg 35
               ||||||||||||||||||||
Sbjct: 2796780 ggcgcggctggcggcgacgg 2796799

>emb|BX323039.6| Zebrafish DNA sequence from clone CH211-145A11 in linkage group 10,
              complete sequence
          Length = 150772

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 219    agcagggtattttgcagtgt 238
              ||||||||||||||||||||
Sbjct: 113976 agcagggtattttgcagtgt 113995

>emb|AJ323855.1|HSA323855 Homo sapiens genomic sequence surrounding NotI site, clone NB1-840C
          Length = 1289

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 44   gcgctcatcggctggctctt 63
            ||||||||||||||||||||
Sbjct: 1004 gcgctcatcggctggctctt 1023

>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia
          Length = 1923819

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 16     ggcgcggctggcggcgacgg 35
              ||||||||||||||||||||
Sbjct: 803008 ggcgcggctggcggcgacgg 803027

>gb|AY623663.1| Mycobacterium marinum mycobacterial enhanced infection locus 1 (mel1)
            genomic sequence
          Length = 10369

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 16   ggcgcggctggcggcgacggtgcg 39
            ||||||||||||||| ||||||||
Sbjct: 2874 ggcgcggctggcggccacggtgcg 2897

>emb|CT009563.15| Mouse DNA sequence from clone RP23-69I23 on chromosome 14, complete
             sequence
          Length = 68081

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 587   agattcacaatatcagatat 606
             ||||||||||||||||||||
Sbjct: 66040 agattcacaatatcagatat 66059

>emb|AM160766.1| Unidentified microorganism metagenome environmental cosmid clone
           10D10, sub clone 10D10-P2
          Length = 927

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 79  cgccagcgacgtcgcgcgac 98
           ||||||||||||||||||||
Sbjct: 610 cgccagcgacgtcgcgcgac 591

>dbj|AP006686.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT18K09, TM0380,
             complete sequence
          Length = 88931

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 337   ttcctttgctcattttggatggtt 360
             ||||||||||||||||| ||||||
Sbjct: 23605 ttcctttgctcattttgaatggtt 23628

>emb|AL390025.1| Human DNA sequence from clone RP3-336K20 on chromosome 6 Contains a
             pseudogene similar to hetergeneous riboprotein L (HNRNP
             L), to Ribosomal protein S26, a pseudogene similar to
             isocitrate dehydrogenase (NADP+), STSs and GSSs, complete
             sequence
          Length = 52747

 Score = 40.1 bits (20), Expect = 8.9
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 329   gcatgttgttcctttgctca 348
             ||||||||||||||||||||
Sbjct: 12112 gcatgttgttcctttgctca 12131


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,445,531
Number of Sequences: 3902068
Number of extensions: 4445531
Number of successful extensions: 86424
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85927
Number of HSP's gapped (non-prelim): 497
length of query: 649
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 626
effective length of database: 17,143,297,704
effective search space: 10731704362704
effective search space used: 10731704362704
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)