ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2d20 |
|---|---|
| Clone Library Name | barley_pub |
>RS6_RHOS4 (Q3J1M1) 30S ribosomal protein S6| Length = 132 Score = 36.2 bits (82), Expect = 0.092 Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 2/111 (1%) Frame = +2 Query: 272 LVKHFFIEKEVTSTLVMDSLYTGLKALEYK-SKNQVGLSKLTETDARSTSMVLVEQDMFV 448 L++HF V+D Y G+K + YK +KN+ G ++DA S ++ +E+ M + Sbjct: 22 LIEHFSTVLADNGGKVVDREYWGVKTMAYKINKNRKGHYAFLKSDAPSAAVQEMERLMRL 81 Query: 449 LADDVSILLERATLDTL-PHQQLPTKDEKASQNRTKESSSGDDFNKDSIER 598 D + +L + P Q+ +DE+ +R S GD ++ R Sbjct: 82 HDDVMRVLTIKVDKHAEGPSIQMQKRDERERGDRGDRSDRGDRGDRGGFRR 132
>DUOX1_PIG (Q8HZK3) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-)| Length = 1553 Score = 33.9 bits (76), Expect = 0.46 Identities = 45/187 (24%), Positives = 73/187 (39%), Gaps = 10/187 (5%) Frame = +2 Query: 131 IDERRSKLCRLIEDRLRWS--SFNAFWLGMDPSMRRSMTREKTDTILKVLVKHFFIEKEV 304 ++E R + ++ L+ S SF + L MR ++TRE+ +L+ +H F Sbjct: 718 LEEERQVMVENLQSALKESGLSFQEWELREQELMRAAVTREQRSHLLETFFRHLF----- 772 Query: 305 TSTLVMDSLYTGLKALEYKSKNQVGLSKLTETDARSTSMVLVEQDMFVLA-------DDV 463 + L +D G L+ K + L+ + S+ L QDMFV + D Sbjct: 773 SQVLDIDQADAGALPLDSSQKVREALTCELSRAEFAESLGLKPQDMFVESMFSLADKDGN 832 Query: 464 SILLERATLDTLPHQQLPTKDEKAS-QNRTKESSSGDDFNKDSIERDDRRLIELGWKTLE 640 L R LD L + +EK+ R + +KD R R IE+ L Sbjct: 833 GYLSFREFLDILVVFMKGSPEEKSRLMFRMYDFDGNGLISKDEFIRMLRSFIEISNNCLS 892 Query: 641 SFALAHI 661 L + Sbjct: 893 KAQLTEV 899
>DUOX1_CANFA (Q9MZF4) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-) (NADPH| thyroid oxidase 1) (Thyroid oxidase 1) Length = 1551 Score = 32.3 bits (72), Expect = 1.3 Identities = 45/187 (24%), Positives = 71/187 (37%), Gaps = 10/187 (5%) Frame = +2 Query: 131 IDERRSKLCRLIEDRLRWSS--FNAFWLGMDPSMRRSMTREKTDTILKVLVKHFFIEKEV 304 ++E R L + L+ S F + L MR ++TR++ +L+ +H F Sbjct: 718 LEEERQVLVENLRGALKESGLKFQEWELREQELMRTAVTRQQRSHLLETFFRHLF----- 772 Query: 305 TSTLVMDSLYTGLKALEYKSKNQVGLSKLTETDARSTSMVLVEQDMFVLA-------DDV 463 + L +D G L+ K Q L+ + S+ L QDMFV + D Sbjct: 773 SQVLDIDQADAGTLPLDSSQKVQEALTCELSRAEFAESLGLKPQDMFVESMFSLADKDGN 832 Query: 464 SILLERATLDTLPHQQLPTKDEKAS-QNRTKESSSGDDFNKDSIERDDRRLIELGWKTLE 640 L R LD L + +EK+ R + +KD R R IE+ L Sbjct: 833 GYLSFREFLDILVVFMKGSPEEKSRLMFRMYDFDGNGLISKDEFIRMLRSFIEISNNCLS 892 Query: 641 SFALAHI 661 L + Sbjct: 893 KAQLTEV 899
>RS6_SILPO (Q5LR50) 30S ribosomal protein S6| Length = 117 Score = 32.0 bits (71), Expect = 1.7 Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 3/107 (2%) Frame = +2 Query: 242 REKTDTILKVLVKHFFIEKEVTSTLVMDSLYTGLKALEYK-SKNQVGLSKLTETDARSTS 418 ++ ++T + L++HF ++D Y G+K + YK +KN+ G TDA +++ Sbjct: 12 QDLSNTQAEGLIEHFGAVLSDNGGSLVDHEYWGVKTMAYKINKNRKGHYAFLRTDAPASA 71 Query: 419 MVLVEQDMFVLADDVSILLERATLDTL--PHQQLPTKDEKASQNRTK 553 + +E+ + L DDV +L + P Q+ +DE+ S+ + Sbjct: 72 VQEMER-LMRLHDDVMRVLTIKVDEHAEGPSVQMQKRDERDSRRERR 117
>DORS_DROME (P15330) Embryonic polarity protein dorsal| Length = 999 Score = 31.6 bits (70), Expect = 2.3 Identities = 23/64 (35%), Positives = 36/64 (56%) Frame = +2 Query: 383 SKLTETDARSTSMVLVEQDMFVLADDVSILLERATLDTLPHQQLPTKDEKASQNRTKESS 562 SKLT+ RS S V ++ ++ AD V I L+ ++++LP QQ + E SQ+ T Sbjct: 836 SKLTKPVGRSVSSVSGKRPAYLNADVVHIPLKGDSVNSLPQQQ---RTEGYSQSSTISVG 892 Query: 563 SGDD 574 +G D Sbjct: 893 AGLD 896
>Y208_VIBCH (Q9KVD8) UPF0114 protein VC0208| Length = 162 Score = 30.8 bits (68), Expect = 3.9 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 10/63 (15%) Frame = -3 Query: 471 KIDTSSAKTNISCS---TSTIEVLRA---SVSVNLDNPTWFLLLY----SRAFSPVYSES 322 K+DTSS K +S S S+I +L+ + ++ D W+LLL+ AF+ Y + Sbjct: 99 KLDTSSLKNKVSASIVAISSIHLLKVFMNTENIESDKIKWYLLLHITFVVSAFAMGYLDK 158 Query: 321 ITK 313 ITK Sbjct: 159 ITK 161
>DUOX1_RAT (Q8CIY2) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-)| Length = 1551 Score = 30.8 bits (68), Expect = 3.9 Identities = 45/187 (24%), Positives = 74/187 (39%), Gaps = 10/187 (5%) Frame = +2 Query: 131 IDERRSKLCRLIEDRLRWS--SFNAFWLGMDPSMRRSMTREKTDTILKVLVKHFFIEKEV 304 ++E R L I L+ + SF + L MR ++TR++ +L+ +H F Sbjct: 718 MEEERQALVENIRAALKENGLSFQEWELREQELMRAAVTRQQRGHLLETFFRHLF----- 772 Query: 305 TSTLVMDSLYTGLKALEYKSKNQVGLSKLTETDARSTSMVLVEQDMFVLA-------DDV 463 + L ++ G L+ +K + L+ + S+ L QDMFV + D Sbjct: 773 SQVLDINQADAGTLPLDSSTKVREALTCELSRAEFADSLGLKPQDMFVESMFSLADKDGN 832 Query: 464 SILLERATLDTLPHQQLPTKDEKAS-QNRTKESSSGDDFNKDSIERDDRRLIELGWKTLE 640 L R LD L + +EK+ R + +KD R R IE+ L Sbjct: 833 GYLSFREFLDILVVFMKGSPEEKSRLMFRMYDFDGNGLISKDEFIRMLRSFIEISNNCLS 892 Query: 641 SFALAHI 661 LA + Sbjct: 893 KDQLAEV 899
>CD45_RAT (P04157) Leukocyte common antigen variant 4 precursor (EC 3.1.3.48)| (L-CA) (CD45 antigen) (T200) (Fragment) Length = 1255 Score = 30.8 bits (68), Expect = 3.9 Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 18/151 (11%) Frame = +2 Query: 155 CRLIEDRLRWSS--------FNAFWLGMDPSMRRSMTREKTDTILKVLVKHFFIEKEVTS 310 C+ + D L +S+ +N +LG DP ++ T + ++ LV F I VTS Sbjct: 488 CKFVVDNLYYSTDYEFLVYFYNGEYLG-DPEIKPQSTSYNSKALIIFLV--FLII--VTS 542 Query: 311 TLVMDSLYTGLKALEYKSKNQVGLSKLTETDARST--------SMVLVEQDMFVLADDVS 466 ++ LY + +S N +L E D S +L+E +AD+ Sbjct: 543 IALLVVLYKIYDLRKKRSSNLDEQQELVERDEEKQLINVDPIHSDLLLETYKRKIADEGR 602 Query: 467 ILLERATLDTLPH--QQLPTKDEKASQNRTK 553 + L A ++P + P KD + SQN+ K Sbjct: 603 LFL--AEFQSIPRVFSKFPIKDARKSQNQNK 631
>DUOX1_HUMAN (Q9NRD9) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-) (NADPH| thyroid oxidase 1) (Thyroid oxidase 1) (Large NOX 1) (Long NOX 1) Length = 1551 Score = 30.4 bits (67), Expect = 5.1 Identities = 45/187 (24%), Positives = 72/187 (38%), Gaps = 10/187 (5%) Frame = +2 Query: 131 IDERRSKLCRLIEDRLRWS--SFNAFWLGMDPSMRRSMTREKTDTILKVLVKHFFIEKEV 304 ++E R L + L+ S S + L MR ++TRE+ +L+ +H F Sbjct: 718 LEEERQALVENLRGALKESGLSIQEWELREQELMRAAVTREQRRHLLETFFRHLF----- 772 Query: 305 TSTLVMDSLYTGLKALEYKSKNQVGLSKLTETDARSTSMVLVEQDMFVLA-------DDV 463 + L ++ G L+ K + L+ + S+ L QDMFV + D Sbjct: 773 SQVLDINQADAGTLPLDSSQKVREALTCELSRAEFAESLGLKPQDMFVESMFSLADKDGN 832 Query: 464 SILLERATLDTLPHQQLPTKDEKAS-QNRTKESSSGDDFNKDSIERDDRRLIELGWKTLE 640 L R LD L + +EK+ R + +KD R R IE+ L Sbjct: 833 GYLSFREFLDILVVFMKGSPEEKSRLMFRMYDFDGNGLISKDEFIRMLRSFIEISNNCLS 892 Query: 641 SFALAHI 661 LA + Sbjct: 893 KAQLAEV 899
>CDPK4_PLABA (P62345) Calcium-dependent protein kinase 4 (EC 2.7.11.1) (PbCDPK4)| Length = 527 Score = 30.4 bits (67), Expect = 5.1 Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 7/102 (6%) Frame = +2 Query: 221 SMRRSMTREKTDTILKVLVKHFFIEKEV-------TSTLVMDSLYTGLKALEYKSKNQVG 379 S ++ +E++ +I K +VK+ F ++ S +V + Y G+K L S +V Sbjct: 25 SQGKNGLKERSTSISKEIVKNSFNNSKLRPGMFIQNSNVVFNEQYKGIKILGKGSFGEVI 84 Query: 380 LSKLTETDARSTSMVLVEQDMFVLADDVSILLERATLDTLPH 505 LSK T V+ ++ + D S+L E L L H Sbjct: 85 LSKDKHTGHEYAIKVISKKHVKRKTDKQSLLREVELLKMLDH 126
>BFR2_ASPFU (Q4WMI1) Protein bfr2| Length = 565 Score = 30.0 bits (66), Expect = 6.6 Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 4/103 (3%) Frame = +2 Query: 359 KSKNQVGLSKLTETDARSTSMVLVEQDMFVLADDVSILLERATLDTLPHQQLPTKDEKAS 538 KS ++ L +L +D ++ + + + A ++ +RAT D L + ++ + + Sbjct: 218 KSDDREELRRLMSSDQKTIAATISQAAKADAAKGRAVKQQRATFDALLNARIKLQKGLTA 277 Query: 539 QNRTKESSSGDD----FNKDSIERDDRRLIELGWKTLESFALA 655 NR ++ G D + ++I+ + + L W TLE LA Sbjct: 278 INRLSVTTKGSDETPSIDGEAIKSAESAALAL-WSTLEDLRLA 319
>CDPK4_PLAYO (Q7RJG2) Calcium-dependent protein kinase 4 (EC 2.7.11.1)| Length = 527 Score = 30.0 bits (66), Expect = 6.6 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 7/95 (7%) Frame = +2 Query: 242 REKTDTILKVLVKHFFIEKEV-------TSTLVMDSLYTGLKALEYKSKNQVGLSKLTET 400 +E++ +I K +VK+ F ++ S +V + Y G+K L S +V LSK T Sbjct: 32 KERSTSISKEIVKNSFNNSKLRPGMFIQNSNVVFNEQYKGIKILGKGSFGEVILSKDKHT 91 Query: 401 DARSTSMVLVEQDMFVLADDVSILLERATLDTLPH 505 V+ ++ + D S+L E L L H Sbjct: 92 GHEYAIKVISKKHVKRKTDKQSLLREVELLKMLDH 126
>CH603_RHILE (Q9L690) 60 kDa chaperonin 3 (Protein Cpn60 3) (groEL protein 3)| Length = 544 Score = 29.6 bits (65), Expect = 8.7 Identities = 24/83 (28%), Positives = 39/83 (46%) Frame = +2 Query: 290 IEKEVTSTLVMDSLYTGLKALEYKSKNQVGLSKLTETDARSTSMVLVEQDMFVLADDVSI 469 +E E +TLV++ L GLK K+ K D VL M +++D+ I Sbjct: 254 VEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDI----AVLTSGQM--ISEDLGI 307 Query: 470 LLERATLDTLPHQQLPTKDEKAS 538 L+ TLD L H + D++++ Sbjct: 308 KLDNVTLDMLGHAKRVLIDKEST 330
>YAFA_SCHPO (Q09863) Hypothetical protein C29E6.10c in chromosome I| Length = 1085 Score = 29.6 bits (65), Expect = 8.7 Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 22/160 (13%) Frame = +2 Query: 182 WSSFNA--------FWLGMDPSMRRSMTREKTDTILKVLV--------------KHFFIE 295 WSS N FWL + S RRS+ + + + +L+ + K IE Sbjct: 251 WSSSNTEEREQIREFWLSLSESERRSLVKVEKEAVLQKMKEQQKYSCSCSVCGRKRLAIE 310 Query: 296 KEVTSTLVMDSLYTGLKALEYKSKNQVGLSKLTETDARSTSMVLVEQDMFVLADDVSILL 475 +E+ ++ D+ Y L+ +N + +D S + +++D +L Sbjct: 311 EEL--EVLYDAYYEELEQYANIQRNLANTESVNASDEGSD-----KSQKGIISDSPKLL- 362 Query: 476 ERATLDTLPHQQLPTKDEKASQNRTKESSSGDDFNKDSIE 595 ++P +P+K + + +SS D +++ IE Sbjct: 363 ------SIPLNNVPSKSLNDDITQDELNSSNADVDEEVIE 396
>SPTCB_DROME (Q00963) Spectrin beta chain| Length = 2291 Score = 29.6 bits (65), Expect = 8.7 Identities = 16/48 (33%), Positives = 25/48 (52%) Frame = +2 Query: 386 KLTETDARSTSMVLVEQDMFVLADDVSILLERATLDTLPHQQLPTKDE 529 +L DAR T ++L +Q+ F+ DD + LE+A H+ T E Sbjct: 1172 QLFNRDARQTEVLLSQQEHFLSKDDTPVNLEQAENQLKRHEAFLTTME 1219 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,904,487 Number of Sequences: 219361 Number of extensions: 1844717 Number of successful extensions: 5043 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4879 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5037 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6541540170 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
