ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2d20
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RS6_RHOS4 (Q3J1M1) 30S ribosomal protein S6 36 0.092
2DUOX1_PIG (Q8HZK3) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.1... 34 0.46
3DUOX1_CANFA (Q9MZF4) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1... 32 1.3
4RS6_SILPO (Q5LR50) 30S ribosomal protein S6 32 1.7
5DORS_DROME (P15330) Embryonic polarity protein dorsal 32 2.3
6Y208_VIBCH (Q9KVD8) UPF0114 protein VC0208 31 3.9
7DUOX1_RAT (Q8CIY2) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.1... 31 3.9
8CD45_RAT (P04157) Leukocyte common antigen variant 4 precursor (... 31 3.9
9DUOX1_HUMAN (Q9NRD9) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1... 30 5.1
10CDPK4_PLABA (P62345) Calcium-dependent protein kinase 4 (EC 2.7.... 30 5.1
11BFR2_ASPFU (Q4WMI1) Protein bfr2 30 6.6
12CDPK4_PLAYO (Q7RJG2) Calcium-dependent protein kinase 4 (EC 2.7.... 30 6.6
13CH603_RHILE (Q9L690) 60 kDa chaperonin 3 (Protein Cpn60 3) (groE... 30 8.7
14YAFA_SCHPO (Q09863) Hypothetical protein C29E6.10c in chromosome I 30 8.7
15SPTCB_DROME (Q00963) Spectrin beta chain 30 8.7

>RS6_RHOS4 (Q3J1M1) 30S ribosomal protein S6|
          Length = 132

 Score = 36.2 bits (82), Expect = 0.092
 Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
 Frame = +2

Query: 272 LVKHFFIEKEVTSTLVMDSLYTGLKALEYK-SKNQVGLSKLTETDARSTSMVLVEQDMFV 448
           L++HF          V+D  Y G+K + YK +KN+ G     ++DA S ++  +E+ M +
Sbjct: 22  LIEHFSTVLADNGGKVVDREYWGVKTMAYKINKNRKGHYAFLKSDAPSAAVQEMERLMRL 81

Query: 449 LADDVSILLERATLDTL-PHQQLPTKDEKASQNRTKESSSGDDFNKDSIER 598
             D + +L  +       P  Q+  +DE+   +R   S  GD  ++    R
Sbjct: 82  HDDVMRVLTIKVDKHAEGPSIQMQKRDERERGDRGDRSDRGDRGDRGGFRR 132



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>DUOX1_PIG (Q8HZK3) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-)|
          Length = 1553

 Score = 33.9 bits (76), Expect = 0.46
 Identities = 45/187 (24%), Positives = 73/187 (39%), Gaps = 10/187 (5%)
 Frame = +2

Query: 131  IDERRSKLCRLIEDRLRWS--SFNAFWLGMDPSMRRSMTREKTDTILKVLVKHFFIEKEV 304
            ++E R  +   ++  L+ S  SF  + L     MR ++TRE+   +L+   +H F     
Sbjct: 718  LEEERQVMVENLQSALKESGLSFQEWELREQELMRAAVTREQRSHLLETFFRHLF----- 772

Query: 305  TSTLVMDSLYTGLKALEYKSKNQVGLSKLTETDARSTSMVLVEQDMFVLA-------DDV 463
            +  L +D    G   L+   K +  L+        + S+ L  QDMFV +       D  
Sbjct: 773  SQVLDIDQADAGALPLDSSQKVREALTCELSRAEFAESLGLKPQDMFVESMFSLADKDGN 832

Query: 464  SILLERATLDTLPHQQLPTKDEKAS-QNRTKESSSGDDFNKDSIERDDRRLIELGWKTLE 640
              L  R  LD L      + +EK+    R  +       +KD   R  R  IE+    L 
Sbjct: 833  GYLSFREFLDILVVFMKGSPEEKSRLMFRMYDFDGNGLISKDEFIRMLRSFIEISNNCLS 892

Query: 641  SFALAHI 661
               L  +
Sbjct: 893  KAQLTEV 899



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>DUOX1_CANFA (Q9MZF4) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-) (NADPH|
            thyroid oxidase 1) (Thyroid oxidase 1)
          Length = 1551

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 45/187 (24%), Positives = 71/187 (37%), Gaps = 10/187 (5%)
 Frame = +2

Query: 131  IDERRSKLCRLIEDRLRWSS--FNAFWLGMDPSMRRSMTREKTDTILKVLVKHFFIEKEV 304
            ++E R  L   +   L+ S   F  + L     MR ++TR++   +L+   +H F     
Sbjct: 718  LEEERQVLVENLRGALKESGLKFQEWELREQELMRTAVTRQQRSHLLETFFRHLF----- 772

Query: 305  TSTLVMDSLYTGLKALEYKSKNQVGLSKLTETDARSTSMVLVEQDMFVLA-------DDV 463
            +  L +D    G   L+   K Q  L+        + S+ L  QDMFV +       D  
Sbjct: 773  SQVLDIDQADAGTLPLDSSQKVQEALTCELSRAEFAESLGLKPQDMFVESMFSLADKDGN 832

Query: 464  SILLERATLDTLPHQQLPTKDEKAS-QNRTKESSSGDDFNKDSIERDDRRLIELGWKTLE 640
              L  R  LD L      + +EK+    R  +       +KD   R  R  IE+    L 
Sbjct: 833  GYLSFREFLDILVVFMKGSPEEKSRLMFRMYDFDGNGLISKDEFIRMLRSFIEISNNCLS 892

Query: 641  SFALAHI 661
               L  +
Sbjct: 893  KAQLTEV 899



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>RS6_SILPO (Q5LR50) 30S ribosomal protein S6|
          Length = 117

 Score = 32.0 bits (71), Expect = 1.7
 Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 3/107 (2%)
 Frame = +2

Query: 242 REKTDTILKVLVKHFFIEKEVTSTLVMDSLYTGLKALEYK-SKNQVGLSKLTETDARSTS 418
           ++ ++T  + L++HF          ++D  Y G+K + YK +KN+ G      TDA +++
Sbjct: 12  QDLSNTQAEGLIEHFGAVLSDNGGSLVDHEYWGVKTMAYKINKNRKGHYAFLRTDAPASA 71

Query: 419 MVLVEQDMFVLADDVSILLERATLDTL--PHQQLPTKDEKASQNRTK 553
           +  +E+ +  L DDV  +L     +    P  Q+  +DE+ S+   +
Sbjct: 72  VQEMER-LMRLHDDVMRVLTIKVDEHAEGPSVQMQKRDERDSRRERR 117



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>DORS_DROME (P15330) Embryonic polarity protein dorsal|
          Length = 999

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 23/64 (35%), Positives = 36/64 (56%)
 Frame = +2

Query: 383  SKLTETDARSTSMVLVEQDMFVLADDVSILLERATLDTLPHQQLPTKDEKASQNRTKESS 562
            SKLT+   RS S V  ++  ++ AD V I L+  ++++LP QQ   + E  SQ+ T    
Sbjct: 836  SKLTKPVGRSVSSVSGKRPAYLNADVVHIPLKGDSVNSLPQQQ---RTEGYSQSSTISVG 892

Query: 563  SGDD 574
            +G D
Sbjct: 893  AGLD 896



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>Y208_VIBCH (Q9KVD8) UPF0114 protein VC0208|
          Length = 162

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 10/63 (15%)
 Frame = -3

Query: 471 KIDTSSAKTNISCS---TSTIEVLRA---SVSVNLDNPTWFLLLY----SRAFSPVYSES 322
           K+DTSS K  +S S    S+I +L+    + ++  D   W+LLL+      AF+  Y + 
Sbjct: 99  KLDTSSLKNKVSASIVAISSIHLLKVFMNTENIESDKIKWYLLLHITFVVSAFAMGYLDK 158

Query: 321 ITK 313
           ITK
Sbjct: 159 ITK 161



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>DUOX1_RAT (Q8CIY2) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-)|
          Length = 1551

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 45/187 (24%), Positives = 74/187 (39%), Gaps = 10/187 (5%)
 Frame = +2

Query: 131  IDERRSKLCRLIEDRLRWS--SFNAFWLGMDPSMRRSMTREKTDTILKVLVKHFFIEKEV 304
            ++E R  L   I   L+ +  SF  + L     MR ++TR++   +L+   +H F     
Sbjct: 718  MEEERQALVENIRAALKENGLSFQEWELREQELMRAAVTRQQRGHLLETFFRHLF----- 772

Query: 305  TSTLVMDSLYTGLKALEYKSKNQVGLSKLTETDARSTSMVLVEQDMFVLA-------DDV 463
            +  L ++    G   L+  +K +  L+        + S+ L  QDMFV +       D  
Sbjct: 773  SQVLDINQADAGTLPLDSSTKVREALTCELSRAEFADSLGLKPQDMFVESMFSLADKDGN 832

Query: 464  SILLERATLDTLPHQQLPTKDEKAS-QNRTKESSSGDDFNKDSIERDDRRLIELGWKTLE 640
              L  R  LD L      + +EK+    R  +       +KD   R  R  IE+    L 
Sbjct: 833  GYLSFREFLDILVVFMKGSPEEKSRLMFRMYDFDGNGLISKDEFIRMLRSFIEISNNCLS 892

Query: 641  SFALAHI 661
               LA +
Sbjct: 893  KDQLAEV 899



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>CD45_RAT (P04157) Leukocyte common antigen variant 4 precursor (EC 3.1.3.48)|
           (L-CA) (CD45 antigen) (T200) (Fragment)
          Length = 1255

 Score = 30.8 bits (68), Expect = 3.9
 Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 18/151 (11%)
 Frame = +2

Query: 155 CRLIEDRLRWSS--------FNAFWLGMDPSMRRSMTREKTDTILKVLVKHFFIEKEVTS 310
           C+ + D L +S+        +N  +LG DP ++   T   +  ++  LV  F I   VTS
Sbjct: 488 CKFVVDNLYYSTDYEFLVYFYNGEYLG-DPEIKPQSTSYNSKALIIFLV--FLII--VTS 542

Query: 311 TLVMDSLYTGLKALEYKSKNQVGLSKLTETDARST--------SMVLVEQDMFVLADDVS 466
             ++  LY      + +S N     +L E D            S +L+E     +AD+  
Sbjct: 543 IALLVVLYKIYDLRKKRSSNLDEQQELVERDEEKQLINVDPIHSDLLLETYKRKIADEGR 602

Query: 467 ILLERATLDTLPH--QQLPTKDEKASQNRTK 553
           + L  A   ++P    + P KD + SQN+ K
Sbjct: 603 LFL--AEFQSIPRVFSKFPIKDARKSQNQNK 631



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>DUOX1_HUMAN (Q9NRD9) Dual oxidase 1 precursor (EC 1.6.3.1) (EC 1.11.1.-) (NADPH|
            thyroid oxidase 1) (Thyroid oxidase 1) (Large NOX 1)
            (Long NOX 1)
          Length = 1551

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 45/187 (24%), Positives = 72/187 (38%), Gaps = 10/187 (5%)
 Frame = +2

Query: 131  IDERRSKLCRLIEDRLRWS--SFNAFWLGMDPSMRRSMTREKTDTILKVLVKHFFIEKEV 304
            ++E R  L   +   L+ S  S   + L     MR ++TRE+   +L+   +H F     
Sbjct: 718  LEEERQALVENLRGALKESGLSIQEWELREQELMRAAVTREQRRHLLETFFRHLF----- 772

Query: 305  TSTLVMDSLYTGLKALEYKSKNQVGLSKLTETDARSTSMVLVEQDMFVLA-------DDV 463
            +  L ++    G   L+   K +  L+        + S+ L  QDMFV +       D  
Sbjct: 773  SQVLDINQADAGTLPLDSSQKVREALTCELSRAEFAESLGLKPQDMFVESMFSLADKDGN 832

Query: 464  SILLERATLDTLPHQQLPTKDEKAS-QNRTKESSSGDDFNKDSIERDDRRLIELGWKTLE 640
              L  R  LD L      + +EK+    R  +       +KD   R  R  IE+    L 
Sbjct: 833  GYLSFREFLDILVVFMKGSPEEKSRLMFRMYDFDGNGLISKDEFIRMLRSFIEISNNCLS 892

Query: 641  SFALAHI 661
               LA +
Sbjct: 893  KAQLAEV 899



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>CDPK4_PLABA (P62345) Calcium-dependent protein kinase 4 (EC 2.7.11.1) (PbCDPK4)|
          Length = 527

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 7/102 (6%)
 Frame = +2

Query: 221 SMRRSMTREKTDTILKVLVKHFFIEKEV-------TSTLVMDSLYTGLKALEYKSKNQVG 379
           S  ++  +E++ +I K +VK+ F   ++        S +V +  Y G+K L   S  +V 
Sbjct: 25  SQGKNGLKERSTSISKEIVKNSFNNSKLRPGMFIQNSNVVFNEQYKGIKILGKGSFGEVI 84

Query: 380 LSKLTETDARSTSMVLVEQDMFVLADDVSILLERATLDTLPH 505
           LSK   T       V+ ++ +    D  S+L E   L  L H
Sbjct: 85  LSKDKHTGHEYAIKVISKKHVKRKTDKQSLLREVELLKMLDH 126



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>BFR2_ASPFU (Q4WMI1) Protein bfr2|
          Length = 565

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
 Frame = +2

Query: 359 KSKNQVGLSKLTETDARSTSMVLVEQDMFVLADDVSILLERATLDTLPHQQLPTKDEKAS 538
           KS ++  L +L  +D ++ +  + +      A   ++  +RAT D L + ++  +    +
Sbjct: 218 KSDDREELRRLMSSDQKTIAATISQAAKADAAKGRAVKQQRATFDALLNARIKLQKGLTA 277

Query: 539 QNRTKESSSGDD----FNKDSIERDDRRLIELGWKTLESFALA 655
            NR   ++ G D     + ++I+  +   + L W TLE   LA
Sbjct: 278 INRLSVTTKGSDETPSIDGEAIKSAESAALAL-WSTLEDLRLA 319



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>CDPK4_PLAYO (Q7RJG2) Calcium-dependent protein kinase 4 (EC 2.7.11.1)|
          Length = 527

 Score = 30.0 bits (66), Expect = 6.6
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 7/95 (7%)
 Frame = +2

Query: 242 REKTDTILKVLVKHFFIEKEV-------TSTLVMDSLYTGLKALEYKSKNQVGLSKLTET 400
           +E++ +I K +VK+ F   ++        S +V +  Y G+K L   S  +V LSK   T
Sbjct: 32  KERSTSISKEIVKNSFNNSKLRPGMFIQNSNVVFNEQYKGIKILGKGSFGEVILSKDKHT 91

Query: 401 DARSTSMVLVEQDMFVLADDVSILLERATLDTLPH 505
                  V+ ++ +    D  S+L E   L  L H
Sbjct: 92  GHEYAIKVISKKHVKRKTDKQSLLREVELLKMLDH 126



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>CH603_RHILE (Q9L690) 60 kDa chaperonin 3 (Protein Cpn60 3) (groEL protein 3)|
          Length = 544

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 24/83 (28%), Positives = 39/83 (46%)
 Frame = +2

Query: 290 IEKEVTSTLVMDSLYTGLKALEYKSKNQVGLSKLTETDARSTSMVLVEQDMFVLADDVSI 469
           +E E  +TLV++ L  GLK    K+       K    D      VL    M  +++D+ I
Sbjct: 254 VEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDI----AVLTSGQM--ISEDLGI 307

Query: 470 LLERATLDTLPHQQLPTKDEKAS 538
            L+  TLD L H +    D++++
Sbjct: 308 KLDNVTLDMLGHAKRVLIDKEST 330



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>YAFA_SCHPO (Q09863) Hypothetical protein C29E6.10c in chromosome I|
          Length = 1085

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 32/160 (20%), Positives = 64/160 (40%), Gaps = 22/160 (13%)
 Frame = +2

Query: 182 WSSFNA--------FWLGMDPSMRRSMTREKTDTILKVLV--------------KHFFIE 295
           WSS N         FWL +  S RRS+ + + + +L+ +               K   IE
Sbjct: 251 WSSSNTEEREQIREFWLSLSESERRSLVKVEKEAVLQKMKEQQKYSCSCSVCGRKRLAIE 310

Query: 296 KEVTSTLVMDSLYTGLKALEYKSKNQVGLSKLTETDARSTSMVLVEQDMFVLADDVSILL 475
           +E+   ++ D+ Y  L+      +N      +  +D  S      +    +++D   +L 
Sbjct: 311 EEL--EVLYDAYYEELEQYANIQRNLANTESVNASDEGSD-----KSQKGIISDSPKLL- 362

Query: 476 ERATLDTLPHQQLPTKDEKASQNRTKESSSGDDFNKDSIE 595
                 ++P   +P+K       + + +SS  D +++ IE
Sbjct: 363 ------SIPLNNVPSKSLNDDITQDELNSSNADVDEEVIE 396



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>SPTCB_DROME (Q00963) Spectrin beta chain|
          Length = 2291

 Score = 29.6 bits (65), Expect = 8.7
 Identities = 16/48 (33%), Positives = 25/48 (52%)
 Frame = +2

Query: 386  KLTETDARSTSMVLVEQDMFVLADDVSILLERATLDTLPHQQLPTKDE 529
            +L   DAR T ++L +Q+ F+  DD  + LE+A      H+   T  E
Sbjct: 1172 QLFNRDARQTEVLLSQQEHFLSKDDTPVNLEQAENQLKRHEAFLTTME 1219


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,904,487
Number of Sequences: 219361
Number of extensions: 1844717
Number of successful extensions: 5043
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5037
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6541540170
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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