Clone Name | basd2d19 |
---|---|
Clone Library Name | barley_pub |
>SYEP_MOUSE (Q8CGC7) Bifunctional aminoacyl-tRNA synthetase [Includes:| Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase); Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA ligase)] Length = 1512 Score = 45.4 bits (106), Expect = 3e-05 Identities = 26/84 (30%), Positives = 43/84 (51%) Frame = +1 Query: 121 SPPLSIISAAKIAGVSIIIDPTLASGSVPTLHFSSGDFIHGVNTILRYIARAASVSSFYG 300 +PPL + A + + I ++ G L S VN+ILRY+AR A+ S YG Sbjct: 12 NPPLEALLAVEHVKGDVSI--SVEEGKENLLRVSETVAFTDVNSILRYLARIATTSGLYG 69 Query: 301 QDDIQAAHVDQWLEYASVILSGSE 372 + ++ +D WLE+++ LS + Sbjct: 70 TNLMEHTEIDHWLEFSATKLSSCD 93
>EF1G1_ORYSA (Q9ZRI7) Elongation factor 1-gamma 1 (EF-1-gamma 1) (eEF-1B gamma| 1) Length = 418 Score = 40.8 bits (94), Expect = 8e-04 Identities = 18/52 (34%), Positives = 29/52 (55%) Frame = +1 Query: 196 GSVPTLHFSSGDFIHGVNTILRYIARAASVSSFYGQDDIQAAHVDQWLEYAS 351 G VP L G N I RY+ R+ S + YG I+ AH++QW+++++ Sbjct: 52 GKVPILETPDGPVFES-NAIARYVTRSKSDNPLYGSSLIEYAHIEQWIDFSA 102
>EF1G2_ARATH (Q9FVT2) Probable elongation factor 1-gamma 2 (EF-1-gamma 2)| (eEF-1B gamma 2) Length = 413 Score = 39.3 bits (90), Expect = 0.002 Identities = 18/53 (33%), Positives = 29/53 (54%) Frame = +1 Query: 196 GSVPTLHFSSGDFIHGVNTILRYIARAASVSSFYGQDDIQAAHVDQWLEYASV 354 G VP L G N I RY++R +S G I+ AH++QW++++S+ Sbjct: 52 GKVPVLETPEGPIFES-NAIARYVSRKNGDNSLNGSSLIEYAHIEQWIDFSSL 103
>SYEP_DROME (P28668) Bifunctional aminoacyl-tRNA synthetase [Includes:| Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA ligase); Prolyl-tRNA synthetase (EC 6.1.1.15) (Proline--tRNA ligase)] Length = 1714 Score = 38.9 bits (89), Expect = 0.003 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Frame = +1 Query: 91 MEARLAFPQESPPLSIISAAKIAGVSIIIDPTLASGSVPTLHFSSGDFI--HGVNTILRY 264 M +L +PP+S ++ A + ++ ++ + S +L F + H N +LR Sbjct: 1 MSIKLKANLNNPPISGLATAHLINGTVPVE-IVWSKEETSLQFPDNRLLVCHSNNDVLRA 59 Query: 265 IARAASVSSFYGQDDIQAAHVDQWLEYA 348 +ARAA YG+ I+ +D WL ++ Sbjct: 60 LARAAPDYKLYGETAIERTQIDHWLSFS 87
>EF1G_PRUAV (Q9FUM1) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)| Length = 422 Score = 38.1 bits (87), Expect = 0.005 Identities = 18/53 (33%), Positives = 27/53 (50%) Frame = +1 Query: 196 GSVPTLHFSSGDFIHGVNTILRYIARAASVSSFYGQDDIQAAHVDQWLEYASV 354 G VP L G N I RY+AR + + G I AH++QW+++ S+ Sbjct: 52 GKVPLLETPDGPIFES-NAIARYVARLKADNPLIGSSLIDYAHIEQWIDFGSL 103
>EF1G2_ORYSA (Q6YW46) Elongation factor 1-gamma 2 (EF-1-gamma 2) (eEF-1B gamma| 2) Length = 418 Score = 37.7 bits (86), Expect = 0.007 Identities = 16/52 (30%), Positives = 28/52 (53%) Frame = +1 Query: 196 GSVPTLHFSSGDFIHGVNTILRYIARAASVSSFYGQDDIQAAHVDQWLEYAS 351 G +P L G N I RY+ R+ + + YG I+ AH++QW ++++ Sbjct: 52 GKIPVLETPDGPVFES-NAIARYVTRSKADNPLYGSSLIEYAHIEQWNDFSA 102
>EF1G3_ORYSA (Q5Z627) Elongation factor 1-gamma 3 (EF-1-gamma 3) (eEF-1B gamma| 3) Length = 416 Score = 37.4 bits (85), Expect = 0.009 Identities = 17/52 (32%), Positives = 27/52 (51%) Frame = +1 Query: 196 GSVPTLHFSSGDFIHGVNTILRYIARAASVSSFYGQDDIQAAHVDQWLEYAS 351 G +P L G N I RY+AR SS G I +H++QW+++++ Sbjct: 52 GKIPVLETPEGAVFES-NAIARYVARLKDNSSLCGSSLIDYSHIEQWMDFSA 102
>EF1G1_ARATH (O04487) Probable elongation factor 1-gamma 1 (EF-1-gamma 1)| (eEF-1B gamma 1) Length = 414 Score = 36.6 bits (83), Expect = 0.015 Identities = 18/58 (31%), Positives = 30/58 (51%) Frame = +1 Query: 196 GSVPTLHFSSGDFIHGVNTILRYIARAASVSSFYGQDDIQAAHVDQWLEYASVILSGS 369 G VP L G N I RY++R +S G I+ A ++QW++++S+ + S Sbjct: 52 GKVPVLETPEGSVFES-NAIARYVSRLNGDNSLNGSSLIEYAQIEQWIDFSSLEIYAS 108
>MCA3_MOUSE (Q9D1M4) Eukaryotic translation elongation factor 1 epsilon-1| (Multisynthetase complex auxiliary component p18) (Elongation factor p18) Length = 174 Score = 34.3 bits (77), Expect = 0.075 Identities = 16/55 (29%), Positives = 28/55 (50%) Frame = +1 Query: 202 VPTLHFSSGDFIHGVNTILRYIARAASVSSFYGQDDIQAAHVDQWLEYASVILSG 366 +P L ++G + G++TI ++ + AS G + A V QWLE+ + G Sbjct: 30 IPVLQTNNGPSLMGLSTIATHLVKQASKEHLLGSTAEEKAMVQQWLEFRVTRVDG 84
>MCA3_CRIGR (P70102) Eukaryotic translation elongation factor 1 epsilon-1| (Multisynthetase complex auxiliary component p18) (Elongation factor p18) Length = 174 Score = 34.3 bits (77), Expect = 0.075 Identities = 17/55 (30%), Positives = 27/55 (49%) Frame = +1 Query: 202 VPTLHFSSGDFIHGVNTILRYIARAASVSSFYGQDDIQAAHVDQWLEYASVILSG 366 +P L ++G + G+ TI ++ + AS G + A V QWLEY + G Sbjct: 30 IPVLQTNNGPSLTGLATIATHLVKQASKEHLLGSTAEEKALVQQWLEYRITQVDG 84
>EF1G_TRYCR (P34715) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)| Length = 411 Score = 33.9 bits (76), Expect = 0.098 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = +1 Query: 196 GSVPTLHFSSGDFIHGVNTILRYIARAASVSSF-YGQDDIQAAHVDQWLEYASVILSGS 369 G P L G N ILR+IAR F YG+ ++ + VD WL++++ L + Sbjct: 54 GRYPVLQTEEGCVFES-NAILRHIARLDRSGGFLYGRTPLEGSQVDMWLDFSATELDAA 111
>MCA3_HUMAN (O43324) Eukaryotic translation elongation factor 1 epsilon-1| (Multisynthetase complex auxiliary component p18) (Elongation factor p18) Length = 174 Score = 33.5 bits (75), Expect = 0.13 Identities = 16/55 (29%), Positives = 27/55 (49%) Frame = +1 Query: 202 VPTLHFSSGDFIHGVNTILRYIARAASVSSFYGQDDIQAAHVDQWLEYASVILSG 366 +P L ++G + G+ TI ++ + A+ G + A V QWLEY + G Sbjct: 30 IPVLQTNNGPSLTGLTTIAAHLVKQANKEYLLGSTAEEKAIVQQWLEYRVTQVDG 84
>LEPA_MYCMS (Q6MTR6) GTP-binding protein lepA| Length = 600 Score = 31.6 bits (70), Expect = 0.49 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 5/64 (7%) Frame = -1 Query: 263 YRRIVLTPCIKSPELKCS-----VGTEPEARVGSMIMETPAILAAEMMESGGLSWGNASL 99 Y +V++ +K LK + T E V S+ ++TP I+ + +E+G + W AS+ Sbjct: 206 YLGVVMSIRLKQGMLKVGDKIKLMSTNAEYEVTSLGIKTPKIVKKDFLEAGEVGWVAASI 265 Query: 98 ASIK 87 +IK Sbjct: 266 KTIK 269
>GSTA_RHILE (Q52828) Protein gstA| Length = 203 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/83 (26%), Positives = 39/83 (46%) Frame = +1 Query: 103 LAFPQESPPLSIISAAKIAGVSIIIDPTLASGSVPTLHFSSGDFIHGVNTILRYIARAAS 282 L P E + + + A A + ++P G VP L +G I + IL Y+AR Sbjct: 22 LGVPYELVEVDLAAGAHKAPDFLKLNPF---GQVPVLD-DNGTVIADSSAILVYLARKYG 77 Query: 283 VSSFYGQDDIQAAHVDQWLEYAS 351 + + ++ + AA + +WL A+ Sbjct: 78 RTDWLPEEAVAAARIQKWLSVAA 100
>CH602_SYNVU (P0A338) 60 kDa chaperonin 2 (Protein Cpn60 2) (groEL protein 2)| Length = 543 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/59 (32%), Positives = 30/59 (50%) Frame = +1 Query: 73 LAARVLMEARLAFPQESPPLSIISAAKIAGVSIIIDPTLASGSVPTLHFSSGDFIHGVN 249 LA+R+ P+E I+++A A V+ I D A G+V + +GDF +G N Sbjct: 420 LASRIDALLPSLSPEEQTGARIVASALAAPVAQIADNAGAEGAVVVENVRAGDFNYGFN 478
>CH602_SYNEL (P0A337) 60 kDa chaperonin 2 (Protein Cpn60 2) (groEL protein 2)| Length = 543 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/59 (32%), Positives = 30/59 (50%) Frame = +1 Query: 73 LAARVLMEARLAFPQESPPLSIISAAKIAGVSIIIDPTLASGSVPTLHFSSGDFIHGVN 249 LA+R+ P+E I+++A A V+ I D A G+V + +GDF +G N Sbjct: 420 LASRIDALLPSLSPEEQTGARIVASALAAPVAQIADNAGAEGAVVVENVRAGDFNYGFN 478
>PTC2_HUMAN (Q9Y6C5) Protein patched homolog 2 (PTC2)| Length = 1203 Score = 29.3 bits (64), Expect = 2.4 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = -1 Query: 227 PELKCSVGTEPEARVGSMIMETPAILAAEMMESGGLSWGNAS 102 P L +G PE V M E+P IL+ + GGL WG +S Sbjct: 1108 PVLLSILGPPPE--VIQMYKESPEILSPPAPQGGGLRWGASS 1147
>HMDH2_CAPAN (Q9XEL8) 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 (EC| 1.1.1.34) (HMG-CoA reductase 2) Length = 604 Score = 28.5 bits (62), Expect = 4.1 Identities = 15/55 (27%), Positives = 24/55 (43%) Frame = -1 Query: 305 SWP*KLETDAARAMYRRIVLTPCIKSPELKCSVGTEPEARVGSMIMETPAILAAE 141 SW + E D + PC + L C+V T P + ++ + PA+ AE Sbjct: 122 SWDEEDENDEQFILEEDSRRGPCAAATTLGCAVPTPPAKHIAPIVPQQPAVSIAE 176
>ATG20_ASHGO (Q75B65) Autophagy-related protein 20| Length = 577 Score = 28.5 bits (62), Expect = 4.1 Identities = 14/35 (40%), Positives = 21/35 (60%) Frame = +2 Query: 98 RD*HFPRRARHFPSFRLLRLQVFP*SLIQPLPQVQ 202 RD RR F S R + +++FP +LI P+P+ Q Sbjct: 124 RDRVVRRRYSEFESLRKILIKLFPMTLIPPIPEKQ 158
>YLIJ_SHIFL (P0ACA9) Hypothetical GST-like protein yliJ| Length = 208 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Frame = +1 Query: 193 SGSVPTLHFSSGDFI-HGVNTILRYIARAASVSSFYGQDDIQAAHVDQWLEYASVILSGS 369 +G VP L D I N I+RY+A + + A ++W+++A+ LS + Sbjct: 50 NGLVPLLRDDESDLILWESNAIVRYLAAQYGQKRLWIDSPARRAEAEKWMDWANQTLSNA 109
>YLIJ_ECOLI (P0ACA7) Hypothetical GST-like protein yliJ| Length = 208 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Frame = +1 Query: 193 SGSVPTLHFSSGDFI-HGVNTILRYIARAASVSSFYGQDDIQAAHVDQWLEYASVILSGS 369 +G VP L D I N I+RY+A + + A ++W+++A+ LS + Sbjct: 50 NGLVPLLRDDESDLILWESNAIVRYLAAQYGQKRLWIDSPARRAEAEKWMDWANQTLSNA 109
>YLIJ_ECOL6 (P0ACA8) Hypothetical GST-like protein yliJ| Length = 208 Score = 28.1 bits (61), Expect = 5.4 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%) Frame = +1 Query: 193 SGSVPTLHFSSGDFI-HGVNTILRYIARAASVSSFYGQDDIQAAHVDQWLEYASVILSGS 369 +G VP L D I N I+RY+A + + A ++W+++A+ LS + Sbjct: 50 NGLVPLLRDDESDLILWESNAIVRYLAAQYGQKRLWIDSPARRAEAEKWMDWANQTLSNA 109
>ATG20_KLULA (Q6CNX6) Autophagy-related protein 20| Length = 636 Score = 28.1 bits (61), Expect = 5.4 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = +2 Query: 116 RRARHFPSFRLLRLQVFP*SLIQPLPQVQ 202 RR F S R + +++FP SLI P+P+ Q Sbjct: 195 RRYSDFESLRKVLVKLFPISLIPPIPEKQ 223
>ATG20_YEAST (Q07528) Sorting nexin-42 (Autophagy-related protein 20) (Cytoplasm| to vacuole targeting protein 20) Length = 640 Score = 27.7 bits (60), Expect = 7.0 Identities = 12/29 (41%), Positives = 19/29 (65%) Frame = +2 Query: 116 RRARHFPSFRLLRLQVFP*SLIQPLPQVQ 202 RR F S R + +++FP +LI P+P+ Q Sbjct: 191 RRYSDFESLRSILIRLFPMTLIPPIPEKQ 219
>DACA_HAEIN (P44466) Penicillin-binding protein 5 precursor (D-alanyl-D-alanine| carboxypeptidase fraction A) (EC 3.4.16.4) (DD-peptidase) (DD-carboxypeptidase) (PBP-5) Length = 393 Score = 27.7 bits (60), Expect = 7.0 Identities = 16/49 (32%), Positives = 22/49 (44%) Frame = -1 Query: 221 LKCSVGTEPEARVGSMIMETPAILAAEMMESGGLSWGNASLASIKTLAA 75 L S T R+ S++M P E+ L WG A+ + KTL A Sbjct: 242 LVASATTSNNMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEA 290
>INPP_MOUSE (P49442) Inositol polyphosphate 1-phosphatase (EC 3.1.3.57)| (IPPase) (IPP) Length = 396 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = +1 Query: 172 IIDPTLASGSVPTLHFSSGDFIHGVNTILRYIARAASVSSFYG 300 + DPTL S + H S G ++ +++ +YI +A+V S G Sbjct: 131 LTDPTLESLDISIPHESLGIWVDPIDSTYQYIKGSANVKSNQG 173
>BEM2_ASHGO (Q9HF75) GTPase-activating protein BEM2| Length = 2071 Score = 27.3 bits (59), Expect = 9.2 Identities = 14/35 (40%), Positives = 22/35 (62%) Frame = +2 Query: 221 VLGILYMASTQFSGTLHVLHLFPASMARMIFRQHM 325 +L I ST SG+ H++ FPAS+ ++I R H+ Sbjct: 1347 ILDIFTWLSTLESGSAHIIDKFPASV-QLIVRLHL 1380
>SIN3A_MOUSE (Q60520) Paired amphipathic helix protein Sin3a (Transcriptional| corepressor Sin3a) (Histone deacetylase complex subunit Sin3a) Length = 1282 Score = 27.3 bits (59), Expect = 9.2 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 5/93 (5%) Frame = +1 Query: 67 RPLAARVL----MEARLAFPQESPPLSIISAAKIAGVSIIIDPTLASGSVPTLHFSSG-D 231 +P AA+V ++A Q++PPL ++ + V T++ G+ P+L + Sbjct: 244 QPTAAKVSKPSQLQAHTPASQQTPPLPPYASPRSPPVQPHTPVTISLGTAPSLQNNQPVH 303 Query: 232 FIHGVNTILRYIARAASVSSFYGQDDIQAAHVD 330 F H +N + + R F GQ DI A ++ Sbjct: 304 FNHAINYVNKIKNR------FQGQPDIYKAFLE 330
>CATA_BACST (P14412) Peroxidase/catalase (EC 1.11.1.6) (Catalase-peroxidase)| Length = 735 Score = 27.3 bits (59), Expect = 9.2 Identities = 16/50 (32%), Positives = 24/50 (48%) Frame = +1 Query: 229 DFIHGVNTILRYIARAASVSSFYGQDDIQAAHVDQWLEYASVILSGSEFE 378 D I G N+ILR S + FY QDD Q V ++ +++ F+ Sbjct: 681 DLIFGSNSILR------SYAEFYAQDDNQEKFVRDFINAWVKVMNADRFD 724 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,130,545 Number of Sequences: 219361 Number of extensions: 1188791 Number of successful extensions: 3097 Number of sequences better than 10.0: 29 Number of HSP's better than 10.0 without gapping: 3038 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3097 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 1396778976 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)