>SYEP_MOUSE (Q8CGC7) Bifunctional aminoacyl-tRNA synthetase [Includes:|
           Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA
           ligase); Prolyl-tRNA synthetase (EC 6.1.1.15)
           (Proline--tRNA ligase)]
          Length = 1512

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 26/84 (30%), Positives = 43/84 (51%)
 Frame = +1

Query: 121 SPPLSIISAAKIAGVSIIIDPTLASGSVPTLHFSSGDFIHGVNTILRYIARAASVSSFYG 300
           +PPL  + A +     + I  ++  G    L  S       VN+ILRY+AR A+ S  YG
Sbjct: 12  NPPLEALLAVEHVKGDVSI--SVEEGKENLLRVSETVAFTDVNSILRYLARIATTSGLYG 69

Query: 301 QDDIQAAHVDQWLEYASVILSGSE 372
            + ++   +D WLE+++  LS  +
Sbjct: 70  TNLMEHTEIDHWLEFSATKLSSCD 93

>EF1G1_ORYSA (Q9ZRI7) Elongation factor 1-gamma 1 (EF-1-gamma 1) (eEF-1B gamma|
           1)
          Length = 418

 Score = 40.8 bits (94), Expect = 8e-04
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +1

Query: 196 GSVPTLHFSSGDFIHGVNTILRYIARAASVSSFYGQDDIQAAHVDQWLEYAS 351
           G VP L    G      N I RY+ R+ S +  YG   I+ AH++QW+++++
Sbjct: 52  GKVPILETPDGPVFES-NAIARYVTRSKSDNPLYGSSLIEYAHIEQWIDFSA 102

>EF1G2_ARATH (Q9FVT2) Probable elongation factor 1-gamma 2 (EF-1-gamma 2)|
           (eEF-1B gamma 2)
          Length = 413

 Score = 39.3 bits (90), Expect = 0.002
 Identities = 18/53 (33%), Positives = 29/53 (54%)
 Frame = +1

Query: 196 GSVPTLHFSSGDFIHGVNTILRYIARAASVSSFYGQDDIQAAHVDQWLEYASV 354
           G VP L    G      N I RY++R    +S  G   I+ AH++QW++++S+
Sbjct: 52  GKVPVLETPEGPIFES-NAIARYVSRKNGDNSLNGSSLIEYAHIEQWIDFSSL 103

>SYEP_DROME (P28668) Bifunctional aminoacyl-tRNA synthetase [Includes:|
           Glutamyl-tRNA synthetase (EC 6.1.1.17) (Glutamate--tRNA
           ligase); Prolyl-tRNA synthetase (EC 6.1.1.15)
           (Proline--tRNA ligase)]
          Length = 1714

 Score = 38.9 bits (89), Expect = 0.003
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
 Frame = +1

Query: 91  MEARLAFPQESPPLSIISAAKIAGVSIIIDPTLASGSVPTLHFSSGDFI--HGVNTILRY 264
           M  +L     +PP+S ++ A +   ++ ++  + S    +L F     +  H  N +LR 
Sbjct: 1   MSIKLKANLNNPPISGLATAHLINGTVPVE-IVWSKEETSLQFPDNRLLVCHSNNDVLRA 59

Query: 265 IARAASVSSFYGQDDIQAAHVDQWLEYA 348
           +ARAA     YG+  I+   +D WL ++
Sbjct: 60  LARAAPDYKLYGETAIERTQIDHWLSFS 87

>EF1G_PRUAV (Q9FUM1) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)|
          Length = 422

 Score = 38.1 bits (87), Expect = 0.005
 Identities = 18/53 (33%), Positives = 27/53 (50%)
 Frame = +1

Query: 196 GSVPTLHFSSGDFIHGVNTILRYIARAASVSSFYGQDDIQAAHVDQWLEYASV 354
           G VP L    G      N I RY+AR  + +   G   I  AH++QW+++ S+
Sbjct: 52  GKVPLLETPDGPIFES-NAIARYVARLKADNPLIGSSLIDYAHIEQWIDFGSL 103

>EF1G2_ORYSA (Q6YW46) Elongation factor 1-gamma 2 (EF-1-gamma 2) (eEF-1B gamma|
           2)
          Length = 418

 Score = 37.7 bits (86), Expect = 0.007
 Identities = 16/52 (30%), Positives = 28/52 (53%)
 Frame = +1

Query: 196 GSVPTLHFSSGDFIHGVNTILRYIARAASVSSFYGQDDIQAAHVDQWLEYAS 351
           G +P L    G      N I RY+ R+ + +  YG   I+ AH++QW ++++
Sbjct: 52  GKIPVLETPDGPVFES-NAIARYVTRSKADNPLYGSSLIEYAHIEQWNDFSA 102

>EF1G3_ORYSA (Q5Z627) Elongation factor 1-gamma 3 (EF-1-gamma 3) (eEF-1B gamma|
           3)
          Length = 416

 Score = 37.4 bits (85), Expect = 0.009
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 196 GSVPTLHFSSGDFIHGVNTILRYIARAASVSSFYGQDDIQAAHVDQWLEYAS 351
           G +P L    G      N I RY+AR    SS  G   I  +H++QW+++++
Sbjct: 52  GKIPVLETPEGAVFES-NAIARYVARLKDNSSLCGSSLIDYSHIEQWMDFSA 102

>EF1G1_ARATH (O04487) Probable elongation factor 1-gamma 1 (EF-1-gamma 1)|
           (eEF-1B gamma 1)
          Length = 414

 Score = 36.6 bits (83), Expect = 0.015
 Identities = 18/58 (31%), Positives = 30/58 (51%)
 Frame = +1

Query: 196 GSVPTLHFSSGDFIHGVNTILRYIARAASVSSFYGQDDIQAAHVDQWLEYASVILSGS 369
           G VP L    G      N I RY++R    +S  G   I+ A ++QW++++S+ +  S
Sbjct: 52  GKVPVLETPEGSVFES-NAIARYVSRLNGDNSLNGSSLIEYAQIEQWIDFSSLEIYAS 108

>MCA3_MOUSE (Q9D1M4) Eukaryotic translation elongation factor 1 epsilon-1|
           (Multisynthetase complex auxiliary component p18)
           (Elongation factor p18)
          Length = 174

 Score = 34.3 bits (77), Expect = 0.075
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +1

Query: 202 VPTLHFSSGDFIHGVNTILRYIARAASVSSFYGQDDIQAAHVDQWLEYASVILSG 366
           +P L  ++G  + G++TI  ++ + AS     G    + A V QWLE+    + G
Sbjct: 30  IPVLQTNNGPSLMGLSTIATHLVKQASKEHLLGSTAEEKAMVQQWLEFRVTRVDG 84

>MCA3_CRIGR (P70102) Eukaryotic translation elongation factor 1 epsilon-1|
           (Multisynthetase complex auxiliary component p18)
           (Elongation factor p18)
          Length = 174

 Score = 34.3 bits (77), Expect = 0.075
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +1

Query: 202 VPTLHFSSGDFIHGVNTILRYIARAASVSSFYGQDDIQAAHVDQWLEYASVILSG 366
           +P L  ++G  + G+ TI  ++ + AS     G    + A V QWLEY    + G
Sbjct: 30  IPVLQTNNGPSLTGLATIATHLVKQASKEHLLGSTAEEKALVQQWLEYRITQVDG 84

>EF1G_TRYCR (P34715) Elongation factor 1-gamma (EF-1-gamma) (eEF-1B gamma)|
          Length = 411

 Score = 33.9 bits (76), Expect = 0.098
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +1

Query: 196 GSVPTLHFSSGDFIHGVNTILRYIARAASVSSF-YGQDDIQAAHVDQWLEYASVILSGS 369
           G  P L    G      N ILR+IAR      F YG+  ++ + VD WL++++  L  +
Sbjct: 54  GRYPVLQTEEGCVFES-NAILRHIARLDRSGGFLYGRTPLEGSQVDMWLDFSATELDAA 111

>MCA3_HUMAN (O43324) Eukaryotic translation elongation factor 1 epsilon-1|
           (Multisynthetase complex auxiliary component p18)
           (Elongation factor p18)
          Length = 174

 Score = 33.5 bits (75), Expect = 0.13
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +1

Query: 202 VPTLHFSSGDFIHGVNTILRYIARAASVSSFYGQDDIQAAHVDQWLEYASVILSG 366
           +P L  ++G  + G+ TI  ++ + A+     G    + A V QWLEY    + G
Sbjct: 30  IPVLQTNNGPSLTGLTTIAAHLVKQANKEYLLGSTAEEKAIVQQWLEYRVTQVDG 84

>LEPA_MYCMS (Q6MTR6) GTP-binding protein lepA|
          Length = 600

 Score = 31.6 bits (70), Expect = 0.49
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
 Frame = -1

Query: 263 YRRIVLTPCIKSPELKCS-----VGTEPEARVGSMIMETPAILAAEMMESGGLSWGNASL 99
           Y  +V++  +K   LK       + T  E  V S+ ++TP I+  + +E+G + W  AS+
Sbjct: 206 YLGVVMSIRLKQGMLKVGDKIKLMSTNAEYEVTSLGIKTPKIVKKDFLEAGEVGWVAASI 265

Query: 98  ASIK 87
            +IK
Sbjct: 266 KTIK 269

>GSTA_RHILE (Q52828) Protein gstA|
          Length = 203

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 22/83 (26%), Positives = 39/83 (46%)
 Frame = +1

Query: 103 LAFPQESPPLSIISAAKIAGVSIIIDPTLASGSVPTLHFSSGDFIHGVNTILRYIARAAS 282
           L  P E   + + + A  A   + ++P    G VP L   +G  I   + IL Y+AR   
Sbjct: 22  LGVPYELVEVDLAAGAHKAPDFLKLNPF---GQVPVLD-DNGTVIADSSAILVYLARKYG 77

Query: 283 VSSFYGQDDIQAAHVDQWLEYAS 351
            + +  ++ + AA + +WL  A+
Sbjct: 78  RTDWLPEEAVAAARIQKWLSVAA 100

>CH602_SYNVU (P0A338) 60 kDa chaperonin 2 (Protein Cpn60 2) (groEL protein 2)|
          Length = 543

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +1

Query: 73  LAARVLMEARLAFPQESPPLSIISAAKIAGVSIIIDPTLASGSVPTLHFSSGDFIHGVN 249
           LA+R+        P+E     I+++A  A V+ I D   A G+V   +  +GDF +G N
Sbjct: 420 LASRIDALLPSLSPEEQTGARIVASALAAPVAQIADNAGAEGAVVVENVRAGDFNYGFN 478

>CH602_SYNEL (P0A337) 60 kDa chaperonin 2 (Protein Cpn60 2) (groEL protein 2)|
          Length = 543

 Score = 29.6 bits (65), Expect = 1.8
 Identities = 19/59 (32%), Positives = 30/59 (50%)
 Frame = +1

Query: 73  LAARVLMEARLAFPQESPPLSIISAAKIAGVSIIIDPTLASGSVPTLHFSSGDFIHGVN 249
           LA+R+        P+E     I+++A  A V+ I D   A G+V   +  +GDF +G N
Sbjct: 420 LASRIDALLPSLSPEEQTGARIVASALAAPVAQIADNAGAEGAVVVENVRAGDFNYGFN 478

>PTC2_HUMAN (Q9Y6C5) Protein patched homolog 2 (PTC2)|
          Length = 1203

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = -1

Query: 227  PELKCSVGTEPEARVGSMIMETPAILAAEMMESGGLSWGNAS 102
            P L   +G  PE  V  M  E+P IL+    + GGL WG +S
Sbjct: 1108 PVLLSILGPPPE--VIQMYKESPEILSPPAPQGGGLRWGASS 1147

>HMDH2_CAPAN (Q9XEL8) 3-hydroxy-3-methylglutaryl-coenzyme A reductase 2 (EC|
           1.1.1.34) (HMG-CoA reductase 2)
          Length = 604

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = -1

Query: 305 SWP*KLETDAARAMYRRIVLTPCIKSPELKCSVGTEPEARVGSMIMETPAILAAE 141
           SW  + E D    +       PC  +  L C+V T P   +  ++ + PA+  AE
Sbjct: 122 SWDEEDENDEQFILEEDSRRGPCAAATTLGCAVPTPPAKHIAPIVPQQPAVSIAE 176

>ATG20_ASHGO (Q75B65) Autophagy-related protein 20|
          Length = 577

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +2

Query: 98  RD*HFPRRARHFPSFRLLRLQVFP*SLIQPLPQVQ 202
           RD    RR   F S R + +++FP +LI P+P+ Q
Sbjct: 124 RDRVVRRRYSEFESLRKILIKLFPMTLIPPIPEKQ 158

>YLIJ_SHIFL (P0ACA9) Hypothetical GST-like protein yliJ|
          Length = 208

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +1

Query: 193 SGSVPTLHFSSGDFI-HGVNTILRYIARAASVSSFYGQDDIQAAHVDQWLEYASVILSGS 369
           +G VP L     D I    N I+RY+A        +     + A  ++W+++A+  LS +
Sbjct: 50  NGLVPLLRDDESDLILWESNAIVRYLAAQYGQKRLWIDSPARRAEAEKWMDWANQTLSNA 109

>YLIJ_ECOLI (P0ACA7) Hypothetical GST-like protein yliJ|
          Length = 208

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +1

Query: 193 SGSVPTLHFSSGDFI-HGVNTILRYIARAASVSSFYGQDDIQAAHVDQWLEYASVILSGS 369
           +G VP L     D I    N I+RY+A        +     + A  ++W+++A+  LS +
Sbjct: 50  NGLVPLLRDDESDLILWESNAIVRYLAAQYGQKRLWIDSPARRAEAEKWMDWANQTLSNA 109

>YLIJ_ECOL6 (P0ACA8) Hypothetical GST-like protein yliJ|
          Length = 208

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +1

Query: 193 SGSVPTLHFSSGDFI-HGVNTILRYIARAASVSSFYGQDDIQAAHVDQWLEYASVILSGS 369
           +G VP L     D I    N I+RY+A        +     + A  ++W+++A+  LS +
Sbjct: 50  NGLVPLLRDDESDLILWESNAIVRYLAAQYGQKRLWIDSPARRAEAEKWMDWANQTLSNA 109

>ATG20_KLULA (Q6CNX6) Autophagy-related protein 20|
          Length = 636

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +2

Query: 116 RRARHFPSFRLLRLQVFP*SLIQPLPQVQ 202
           RR   F S R + +++FP SLI P+P+ Q
Sbjct: 195 RRYSDFESLRKVLVKLFPISLIPPIPEKQ 223

>ATG20_YEAST (Q07528) Sorting nexin-42 (Autophagy-related protein 20) (Cytoplasm|
           to vacuole targeting protein 20)
          Length = 640

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +2

Query: 116 RRARHFPSFRLLRLQVFP*SLIQPLPQVQ 202
           RR   F S R + +++FP +LI P+P+ Q
Sbjct: 191 RRYSDFESLRSILIRLFPMTLIPPIPEKQ 219

>DACA_HAEIN (P44466) Penicillin-binding protein 5 precursor (D-alanyl-D-alanine|
           carboxypeptidase fraction A) (EC 3.4.16.4)
           (DD-peptidase) (DD-carboxypeptidase) (PBP-5)
          Length = 393

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 16/49 (32%), Positives = 22/49 (44%)
 Frame = -1

Query: 221 LKCSVGTEPEARVGSMIMETPAILAAEMMESGGLSWGNASLASIKTLAA 75
           L  S  T    R+ S++M  P     E+     L WG A+  + KTL A
Sbjct: 242 LVASATTSNNMRLISVVMGVPTYKGREVESKKLLQWGFANFETFKTLEA 290

>INPP_MOUSE (P49442) Inositol polyphosphate 1-phosphatase (EC 3.1.3.57)|
           (IPPase) (IPP)
          Length = 396

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +1

Query: 172 IIDPTLASGSVPTLHFSSGDFIHGVNTILRYIARAASVSSFYG 300
           + DPTL S  +   H S G ++  +++  +YI  +A+V S  G
Sbjct: 131 LTDPTLESLDISIPHESLGIWVDPIDSTYQYIKGSANVKSNQG 173

>BEM2_ASHGO (Q9HF75) GTPase-activating protein BEM2|
          Length = 2071

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 221  VLGILYMASTQFSGTLHVLHLFPASMARMIFRQHM 325
            +L I    ST  SG+ H++  FPAS+ ++I R H+
Sbjct: 1347 ILDIFTWLSTLESGSAHIIDKFPASV-QLIVRLHL 1380

>SIN3A_MOUSE (Q60520) Paired amphipathic helix protein Sin3a (Transcriptional|
           corepressor Sin3a) (Histone deacetylase complex subunit
           Sin3a)
          Length = 1282

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 24/93 (25%), Positives = 43/93 (46%), Gaps = 5/93 (5%)
 Frame = +1

Query: 67  RPLAARVL----MEARLAFPQESPPLSIISAAKIAGVSIIIDPTLASGSVPTLHFSSG-D 231
           +P AA+V     ++A     Q++PPL   ++ +   V      T++ G+ P+L  +    
Sbjct: 244 QPTAAKVSKPSQLQAHTPASQQTPPLPPYASPRSPPVQPHTPVTISLGTAPSLQNNQPVH 303

Query: 232 FIHGVNTILRYIARAASVSSFYGQDDIQAAHVD 330
           F H +N + +   R      F GQ DI  A ++
Sbjct: 304 FNHAINYVNKIKNR------FQGQPDIYKAFLE 330

>CATA_BACST (P14412) Peroxidase/catalase (EC 1.11.1.6) (Catalase-peroxidase)|
          Length = 735

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/50 (32%), Positives = 24/50 (48%)
 Frame = +1

Query: 229 DFIHGVNTILRYIARAASVSSFYGQDDIQAAHVDQWLEYASVILSGSEFE 378
           D I G N+ILR      S + FY QDD Q   V  ++     +++   F+
Sbjct: 681 DLIFGSNSILR------SYAEFYAQDDNQEKFVRDFINAWVKVMNADRFD 724


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,130,545
Number of Sequences: 219361
Number of extensions: 1188791
Number of successful extensions: 3097
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 3038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3097
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 1396778976
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)