Clone Name | basd2d19 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK073797.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033067G11, full insert sequence Length = 2453 Score = 210 bits (106), Expect = 2e-51 Identities = 244/290 (84%) Strand = Plus / Plus Query: 90 aatggaggcgagactagcatttccccaggagagcccgccactttccatcatttcggctgc 149 ||||||| ||| ||||||||| |||||||| || || |||||| ||||| | | ||||| Sbjct: 158 aatggagccgaaactagcattcccccaggatagtccaccacttgccatcctctgtgctgc 217 Query: 150 taagattgcaggtgtttccataatcattgatccaacccttgcctcaggttcagtgcccac 209 |||| | |||||||||||| | | | | ||||| | || ||||| ||||||| ||||| Sbjct: 218 taaggtcgcaggtgtttccctcaccctcgatccgaagctcgcctcgggttcagcacccac 277 Query: 210 actacacttcagttctggggattttatacatggcgtcaacacaattctccggtacattgc 269 ||| ||| | |||||||||||||||| || || || ||||||||||| || |||||||| Sbjct: 278 acttcaccttggttctggggattttatccacggtgttaacacaattcttcgttacattgc 337 Query: 270 acgtgctgcatctgtttccagcttctatggccaggatgatattcaggcagcacatgttga 329 |||| |||||||||| |||| |||||||| ||||||| ||||||||||||| ||||||| Sbjct: 338 tcgtgttgcatctgttaccagtttctatggtcaggatgctattcaggcagcatatgttga 397 Query: 330 tcaatggctcgagtacgcatcagtcattctttcaggctctgaatttgaag 379 |||||||||||| ||||| |||||||||||||||| ||||||||||||| Sbjct: 398 tcaatggctcgactacgccccagtcattctttcaggatctgaatttgaag 447
>ref|NM_188058.1| Oryza sativa (japonica cultivar-group), Ozsa8478 predicted mRNA Length = 2148 Score = 208 bits (105), Expect = 1e-50 Identities = 243/289 (84%) Strand = Plus / Plus Query: 91 atggaggcgagactagcatttccccaggagagcccgccactttccatcatttcggctgct 150 |||||| ||| ||||||||| |||||||| || || |||||| ||||| | | |||||| Sbjct: 1 atggagccgaaactagcattcccccaggatagtccaccacttgccatcctctgtgctgct 60 Query: 151 aagattgcaggtgtttccataatcattgatccaacccttgcctcaggttcagtgcccaca 210 ||| | |||||||||||| | | | | ||||| | || ||||| ||||||| |||||| Sbjct: 61 aaggtcgcaggtgtttccctcaccctcgatccgaagctcgcctcgggttcagcacccaca 120 Query: 211 ctacacttcagttctggggattttatacatggcgtcaacacaattctccggtacattgca 270 || ||| | |||||||||||||||| || || || ||||||||||| || |||||||| Sbjct: 121 cttcaccttggttctggggattttatccacggtgttaacacaattcttcgttacattgct 180 Query: 271 cgtgctgcatctgtttccagcttctatggccaggatgatattcaggcagcacatgttgat 330 |||| |||||||||| |||| |||||||| ||||||| ||||||||||||| |||||||| Sbjct: 181 cgtgttgcatctgttaccagtttctatggtcaggatgctattcaggcagcatatgttgat 240 Query: 331 caatggctcgagtacgcatcagtcattctttcaggctctgaatttgaag 379 ||||||||||| ||||| |||||||||||||||| ||||||||||||| Sbjct: 241 caatggctcgactacgccccagtcattctttcaggatctgaatttgaag 289
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 95.6 bits (48), Expect = 1e-16 Identities = 87/100 (87%) Strand = Plus / Minus Query: 227 gggattttatacatggcgtcaacacaattctccggtacattgcacgtgctgcatctgttt 286 |||||||||| || || || ||||||||||| || |||||||| |||| |||||||||| Sbjct: 9375880 gggattttatccacggtgttaacacaattcttcgttacattgctcgtgttgcatctgtta 9375821 Query: 287 ccagcttctatggccaggatgatattcaggcagcacatgt 326 |||| |||||||| ||||||| ||||||||||||| |||| Sbjct: 9375820 ccagtttctatggtcaggatgctattcaggcagcatatgt 9375781 Score = 77.8 bits (39), Expect = 2e-11 Identities = 51/55 (92%) Strand = Plus / Minus Query: 325 gttgatcaatggctcgagtacgcatcagtcattctttcaggctctgaatttgaag 379 ||||||||||||||||| ||||| |||||||||||||||| ||||||||||||| Sbjct: 9375687 gttgatcaatggctcgactacgccccagtcattctttcaggatctgaatttgaag 9375633 Score = 54.0 bits (27), Expect = 3e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 90 aatggaggcgagactagcatttccccaggagagcccgccactttccatcatttcggctgc 149 ||||||| ||| ||||||||| |||||||| || || |||||| ||||| | | ||||| Sbjct: 9376375 aatggagccgaaactagcattcccccaggatagtccaccacttgccatcctctgtgctgc 9376316 Query: 150 taagattgcaggtgtttcc 168 |||| | |||||||||||| Sbjct: 9376315 taaggtcgcaggtgtttcc 9376297
>dbj|AP001081.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0693B08 Length = 140812 Score = 95.6 bits (48), Expect = 1e-16 Identities = 87/100 (87%) Strand = Plus / Minus Query: 227 gggattttatacatggcgtcaacacaattctccggtacattgcacgtgctgcatctgttt 286 |||||||||| || || || ||||||||||| || |||||||| |||| |||||||||| Sbjct: 46207 gggattttatccacggtgttaacacaattcttcgttacattgctcgtgttgcatctgtta 46148 Query: 287 ccagcttctatggccaggatgatattcaggcagcacatgt 326 |||| |||||||| ||||||| ||||||||||||| |||| Sbjct: 46147 ccagtttctatggtcaggatgctattcaggcagcatatgt 46108 Score = 77.8 bits (39), Expect = 2e-11 Identities = 51/55 (92%) Strand = Plus / Minus Query: 325 gttgatcaatggctcgagtacgcatcagtcattctttcaggctctgaatttgaag 379 ||||||||||||||||| ||||| |||||||||||||||| ||||||||||||| Sbjct: 46014 gttgatcaatggctcgactacgccccagtcattctttcaggatctgaatttgaag 45960 Score = 54.0 bits (27), Expect = 3e-04 Identities = 66/79 (83%) Strand = Plus / Minus Query: 90 aatggaggcgagactagcatttccccaggagagcccgccactttccatcatttcggctgc 149 ||||||| ||| ||||||||| |||||||| || || |||||| ||||| | | ||||| Sbjct: 46702 aatggagccgaaactagcattcccccaggatagtccaccacttgccatcctctgtgctgc 46643 Query: 150 taagattgcaggtgtttcc 168 |||| | |||||||||||| Sbjct: 46642 taaggtcgcaggtgtttcc 46624
>gb|AC004111.1| Homo sapiens BAC clone CTB-103H13 from 7, complete sequence Length = 106172 Score = 44.1 bits (22), Expect = 0.32 Identities = 22/22 (100%) Strand = Plus / Plus Query: 308 atattcaggcagcacatgttga 329 |||||||||||||||||||||| Sbjct: 31990 atattcaggcagcacatgttga 32011
>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence Length = 177402 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 agttctggggattttatacat 240 ||||||||||||||||||||| Sbjct: 131939 agttctggggattttatacat 131959
>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence Length = 163782 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 220 agttctggggattttatacat 240 ||||||||||||||||||||| Sbjct: 133445 agttctggggattttatacat 133465
>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence Length = 204813 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 220 agttctggggattttatacat 240 ||||||||||||||||||||| Sbjct: 105034 agttctggggattttatacat 105014
>gb|AY108732.1| Zea mays PCO097740 mRNA sequence Length = 2588 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 358 ctttcaggctctgaatttgaa 378 ||||||||||||||||||||| Sbjct: 471 ctttcaggctctgaatttgaa 491
>gb|AC167548.1| Mus musculus chromosome 18, clone wi1-1164C4, complete sequence Length = 41219 Score = 40.1 bits (20), Expect = 5.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 349 tcagtcattctttcaggctctgaatttg 376 |||||||||| |||||||||||| |||| Sbjct: 23024 tcagtcattccttcaggctctgattttg 23051
>ref|XM_565800.1| Anopheles gambiae str. PEST ENSANGP00000025410 (ENSANGG00000025026), partial mRNA Length = 477 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 24 gccgcccgcagctacgccggcgac 47 |||||||||||| ||||||||||| Sbjct: 225 gccgcccgcagcaacgccggcgac 248 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,222,984 Number of Sequences: 3902068 Number of extensions: 3222984 Number of successful extensions: 64529 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 64484 Number of HSP's gapped (non-prelim): 43 length of query: 380 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 358 effective length of database: 17,147,199,772 effective search space: 6138697518376 effective search space used: 6138697518376 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)