ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2d16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1POF13_SCHPO (O94334) F-box protein pof13 32 1.1
2E41LA_HUMAN (Q9HCS5) Band 4.1-like protein 4A (NBL4 protein) 31 1.8
3YPAH_PSELE (P52089) UPF0178 protein in pahZ1 5'region 31 2.4
4CN12L_DROME (Q9VTL1) CSN12-like protein 29 7.0
5TILS_RHIME (Q92JY3) tRNA(Ile)-lysidine synthase (EC 6.3.4.-) (tR... 29 7.0
6TIM44_YEAST (Q01852) Import inner membrane translocase subunit T... 29 7.0
7GSH1_PSESM (Q88AR1) Glutamate--cysteine ligase (EC 6.3.2.2) (Gam... 29 9.1

>POF13_SCHPO (O94334) F-box protein pof13|
          Length = 396

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -1

Query: 411 TLTPVIFGSYLVFRVCLDLVPLAQPAPKQCFTPRCPVNCC 292
           TLT       ++F+  LD +P     P +C   RCP+N C
Sbjct: 223 TLTSNWHSRVILFQNALDALPTTHGNPVECDISRCPLNAC 262



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>E41LA_HUMAN (Q9HCS5) Band 4.1-like protein 4A (NBL4 protein)|
          Length = 598

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 17/56 (30%), Positives = 27/56 (48%)
 Frame = -1

Query: 171 PSFILVMDRSPRFGSISSDNRPIKTRFRYGSGGFRSLNQATAYESPAHSSTGTRSE 4
           P F     R+P  GS +   +P++ R  + SG    L Q     S  ++S+G+ SE
Sbjct: 435 PKFPYTRRRNPSCGSDNDSVQPVRRRKAHNSGEDSDLKQRRRSRSRCNTSSGSESE 490



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>YPAH_PSELE (P52089) UPF0178 protein in pahZ1 5'region|
          Length = 154

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = +2

Query: 224 VVVRGEMPLEPRASWFSPKCVEAQQLTGHLGVKHCFGAGCASG 352
           V+ +G +PL PR  W++   + AQQLT    ++   G+G  +G
Sbjct: 82  VLEKGGLPLNPRGEWYTKDTI-AQQLTMRAFMEELRGSGVDTG 123



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>CN12L_DROME (Q9VTL1) CSN12-like protein|
          Length = 395

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = -1

Query: 381 LVFRVCLDLVPLAQPAPKQC--FTP 313
           L++RVCLDL  LAQ   K C  FTP
Sbjct: 108 LMYRVCLDLRYLAQACEKHCQGFTP 132



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>TILS_RHIME (Q92JY3) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 453

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 23/71 (32%), Positives = 34/71 (47%)
 Frame = -2

Query: 224 LIR*FFNISRFGPLLSFIQASSWSWIDHPGSGP*AVTIALLRLAFATAPVGSVPLTKPLP 45
           ++R F  ++R   + SF+QA   SWID P +   A     +R   AT+  G +P   PL 
Sbjct: 172 VLRPFLGLAR-AEIRSFLQARGVSWIDDPSNANPAFERVRVRARIATS--GGMP--TPLG 226

Query: 44  MSRRLILQQAR 12
             R+     AR
Sbjct: 227 NGRQRAASSAR 237



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>TIM44_YEAST (Q01852) Import inner membrane translocase subunit TIM44,|
           mitochondrial precursor (Mitochondrial protein import
           protein 1) (Inner membrane import site protein 45)
           (ISP45) (Membrane import machinery protein MIM44)
          Length = 431

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 347 SGTKSRQTLNTRYDPKITGVKVGQXXXXXXASSSRGKQPGSP 472
           SGT SR TL  RY  + TG+ V +       + ++G  P SP
Sbjct: 10  SGTSSR-TLTARYRSQYTGLLVARVLFSTSTTRAQGGNPRSP 50



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>GSH1_PSESM (Q88AR1) Glutamate--cysteine ligase (EC 6.3.2.2)|
           (Gamma-glutamylcysteine synthetase) (Gamma-ECS) (GCS)
          Length = 529

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = +1

Query: 97  SLNRAIVTAYGPEPG*SIHDQDEAWMKLSRGPNRLMLKNQRMS 225
           SL +A+ T Y P      HDQ+  W++L+   N L ++N+  S
Sbjct: 263 SLRKAVATPYKPYVDIGTHDQNGEWVQLN--TNVLQIENEYYS 303


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 78,553,380
Number of Sequences: 219361
Number of extensions: 1647420
Number of successful extensions: 3909
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3908
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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