>dbj|D30809.1|WHTHPB1B Wheat gene for transcription factor HBP-1b(c38), partial cds
          Length = 6706

 Score =  188 bits (95), Expect = 4e-45
 Identities = 152/170 (89%), Gaps = 1/170 (0%)
 Strand = Plus / Plus

                                                                        
Query: 6    cgggacctacggcggcaggaagccgcagtcgcgtactggtcgctgggctcatcgtgccgg 65
            |||||||||||||||||||||||||||| ||||| ||| |||| |||||| | |||  ||
Sbjct: 2371 cgggacctacggcggcaggaagccgcagccgcgtcctgctcgccgggctcgtggtgtagg 2430

                                                                        
Query: 66   ccaggagcggcggccgcggtagctcggggagcttgcagcagcggtggccgcaaaaggatc 125
            ||| |||||||||| |||||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 2431 ccaagagcggcggcggcggtagctcggggagctcgcagcagcggcggccgcaaaaggatc 2490

                                                              
Query: 126  ggngacggcggcaccctactaccccgtagcctccgatagaggcccctctt 175
            || ||||||||||  ||||||||||||||  || ||||||||||||||||
Sbjct: 2491 ggcgacggcggcagtctactaccccgtag-ttcggatagaggcccctctt 2539

>emb|X56782.1|TA1B38 T.aestivum 1b-c38 gene for HBP-1b (leucine zipper type
           transcription factor)
          Length = 2204

 Score = 48.1 bits (24), Expect = 0.009
 Identities = 45/51 (88%), Gaps = 1/51 (1%)
 Strand = Plus / Plus

                                                              
Query: 125 cggngacggcggcaccctactaccccgtagcctccgatagaggcccctctt 175
           ||| ||||||||||  ||||||||||||||  || ||||||||||||||||
Sbjct: 7   cggcgacggcggcagtctactaccccgtag-ttcggatagaggcccctctt 56

>ref|NM_191645.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2058

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 63  cggccaggagcggcggccgcgg 84
           ||||||||||||||||||||||
Sbjct: 915 cggccaggagcggcggccgcgg 936

>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 63       cggccaggagcggcggccgcgg 84
                ||||||||||||||||||||||
Sbjct: 29265628 cggccaggagcggcggccgcgg 29265649

>dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0692C11
          Length = 169562

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 63    cggccaggagcggcggccgcgg 84
             ||||||||||||||||||||||
Sbjct: 44491 cggccaggagcggcggccgcgg 44512

>dbj|AP003023.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0684B02
          Length = 132470

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 63     cggccaggagcggcggccgcgg 84
              ||||||||||||||||||||||
Sbjct: 111415 cggccaggagcggcggccgcgg 111436

>dbj|AK064946.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000P16, full
            insert sequence
          Length = 1980

 Score = 44.1 bits (22), Expect = 0.14
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 63   cggccaggagcggcggccgcgg 84
            ||||||||||||||||||||||
Sbjct: 1176 cggccaggagcggcggccgcgg 1197

>ref|XM_323845.1| Neurospora crassa OR74A predicted protein (NCU04493.1) partial mRNA
          Length = 519

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 100 gcagcagcggtggccgcaaa 119
           ||||||||||||||||||||
Sbjct: 50  gcagcagcggtggccgcaaa 31

>ref|XM_951969.1| Neurospora crassa OR74A hypothetical protein (NCU04493.1) partial
           mRNA
          Length = 519

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 100 gcagcagcggtggccgcaaa 119
           ||||||||||||||||||||
Sbjct: 50  gcagcagcggtggccgcaaa 31

>ref|NM_008452.1| Mus musculus Kruppel-like factor 2 (lung) (Klf2), mRNA
          Length = 1538

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 64  ggccaggagcggcggccgcg 83
           ||||||||||||||||||||
Sbjct: 836 ggccaggagcggcggccgcg 817

>ref|NM_001007684.1| Rattus norvegicus Kruppel-like factor 2 (lung) (predicted)
           (Klf2_predicted), mRNA
          Length = 1056

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 64  ggccaggagcggcggccgcg 83
           ||||||||||||||||||||
Sbjct: 782 ggccaggagcggcggccgcg 763

>dbj|AK131962.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library,
           clone:2410149J18 product:Kruppel-like factor 2 (lung),
           full insert sequence
          Length = 1818

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 64  ggccaggagcggcggccgcg 83
           ||||||||||||||||||||
Sbjct: 808 ggccaggagcggcggccgcg 789

>ref|XM_579181.1| PREDICTED: Rattus norvegicus Kruppel-like factor (Klf2), mRNA
          Length = 1056

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 64  ggccaggagcggcggccgcg 83
           ||||||||||||||||||||
Sbjct: 782 ggccaggagcggcggccgcg 763

>gb|AF181251.1|AF181251 Rattus norvegicus lung Kruppel-like factor (Lklf) gene, complete cds
          Length = 3026

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 64   ggccaggagcggcggccgcg 83
            ||||||||||||||||||||
Sbjct: 1740 ggccaggagcggcggccgcg 1721

>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome
          Length = 7036071

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 97      cttgcagcagcggtggccgc 116
               ||||||||||||||||||||
Sbjct: 5369236 cttgcagcagcggtggccgc 5369217

>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 69      ggagcggcggccgcggtagc 88
               ||||||||||||||||||||
Sbjct: 4482697 ggagcggcggccgcggtagc 4482678

>gb|AF129002.1|AF129002 Mus musculus lung Kruppel-like factor gene, promoter region and
            partial cds
          Length = 3392

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 64   ggccaggagcggcggccgcg 83
            ||||||||||||||||||||
Sbjct: 3100 ggccaggagcggcggccgcg 3081

>gb|AC113182.14| Mus musculus chromosome 8, clone RP23-39F24, complete sequence
          Length = 217373

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 64     ggccaggagcggcggccgcg 83
              ||||||||||||||||||||
Sbjct: 157190 ggccaggagcggcggccgcg 157209

>gb|U25096.1|MMU25096 Mus musculus Kruppel-like factor LKLF mRNA, complete cds
          Length = 1538

 Score = 40.1 bits (20), Expect = 2.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 64  ggccaggagcggcggccgcg 83
           ||||||||||||||||||||
Sbjct: 836 ggccaggagcggcggccgcg 817

>ref|NM_002518.3| Homo sapiens neuronal PAS domain protein 2 (NPAS2), mRNA
          Length = 4004

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 66 ccaggagcggcggccgcgg 84
          |||||||||||||||||||
Sbjct: 59 ccaggagcggcggccgcgg 77

>gb|BC072383.1| Homo sapiens neuronal PAS domain protein 2, mRNA (cDNA clone
          MGC:71151 IMAGE:6371187), complete cds
          Length = 3216

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 66 ccaggagcggcggccgcgg 84
          |||||||||||||||||||
Sbjct: 26 ccaggagcggcggccgcgg 44

>gb|BC051351.1| Homo sapiens neuronal PAS domain protein 2, mRNA (cDNA clone
          MGC:59643 IMAGE:6538324), complete cds
          Length = 3935

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 66 ccaggagcggcggccgcgg 84
          |||||||||||||||||||
Sbjct: 23 ccaggagcggcggccgcgg 41

>gb|CP000249.1| Frankia sp. CcI3, complete genome
          Length = 5433628

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                  
Query: 76      cggccgcggtagctcgggg 94
               |||||||||||||||||||
Sbjct: 2077526 cggccgcggtagctcgggg 2077544

>gb|AC092168.4| Homo sapiens BAC clone RP11-784K9 from 2, complete sequence
          Length = 199871

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 66     ccaggagcggcggccgcgg 84
              |||||||||||||||||||
Sbjct: 145205 ccaggagcggcggccgcgg 145223

>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 65      gccaggagcggcggccgcg 83
               |||||||||||||||||||
Sbjct: 4522727 gccaggagcggcggccgcg 4522709

>emb|CT010584.19| Mouse DNA sequence from clone RP23-383B20 on chromosome 16, complete
             sequence
          Length = 199010

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 93    ggagcttgcagcagcggtg 111
             |||||||||||||||||||
Sbjct: 26486 ggagcttgcagcagcggtg 26504

>gb|U77970.1|HSU77970 Human neuronal PAS2 (NPAS2) mRNA, complete cds
          Length = 2880

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                             
Query: 66 ccaggagcggcggccgcgg 84
          |||||||||||||||||||
Sbjct: 59 ccaggagcggcggccgcgg 77

>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome
          Length = 3566135

 Score = 38.2 bits (19), Expect = 8.6
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                  
Query: 99      tgcagcagcggtggccgca 117
               |||||||||||||||||||
Sbjct: 1054876 tgcagcagcggtggccgca 1054858


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 865,797
Number of Sequences: 3902068
Number of extensions: 865797
Number of successful extensions: 59446
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58678
Number of HSP's gapped (non-prelim): 766
length of query: 175
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 153
effective length of database: 17,147,199,772
effective search space: 2623521565116
effective search space used: 2623521565116
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)