Clone Name | basd2d15 |
---|---|
Clone Library Name | barley_pub |
>dbj|D30809.1|WHTHPB1B Wheat gene for transcription factor HBP-1b(c38), partial cds Length = 6706 Score = 188 bits (95), Expect = 4e-45 Identities = 152/170 (89%), Gaps = 1/170 (0%) Strand = Plus / Plus Query: 6 cgggacctacggcggcaggaagccgcagtcgcgtactggtcgctgggctcatcgtgccgg 65 |||||||||||||||||||||||||||| ||||| ||| |||| |||||| | ||| || Sbjct: 2371 cgggacctacggcggcaggaagccgcagccgcgtcctgctcgccgggctcgtggtgtagg 2430 Query: 66 ccaggagcggcggccgcggtagctcggggagcttgcagcagcggtggccgcaaaaggatc 125 ||| |||||||||| |||||||||||||||||| |||||||||| ||||||||||||||| Sbjct: 2431 ccaagagcggcggcggcggtagctcggggagctcgcagcagcggcggccgcaaaaggatc 2490 Query: 126 ggngacggcggcaccctactaccccgtagcctccgatagaggcccctctt 175 || |||||||||| |||||||||||||| || |||||||||||||||| Sbjct: 2491 ggcgacggcggcagtctactaccccgtag-ttcggatagaggcccctctt 2539
>emb|X56782.1|TA1B38 T.aestivum 1b-c38 gene for HBP-1b (leucine zipper type transcription factor) Length = 2204 Score = 48.1 bits (24), Expect = 0.009 Identities = 45/51 (88%), Gaps = 1/51 (1%) Strand = Plus / Plus Query: 125 cggngacggcggcaccctactaccccgtagcctccgatagaggcccctctt 175 ||| |||||||||| |||||||||||||| || |||||||||||||||| Sbjct: 7 cggcgacggcggcagtctactaccccgtag-ttcggatagaggcccctctt 56
>ref|NM_191645.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2058 Score = 44.1 bits (22), Expect = 0.14 Identities = 22/22 (100%) Strand = Plus / Plus Query: 63 cggccaggagcggcggccgcgg 84 |||||||||||||||||||||| Sbjct: 915 cggccaggagcggcggccgcgg 936
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.14 Identities = 22/22 (100%) Strand = Plus / Plus Query: 63 cggccaggagcggcggccgcgg 84 |||||||||||||||||||||| Sbjct: 29265628 cggccaggagcggcggccgcgg 29265649
>dbj|AP003381.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0692C11 Length = 169562 Score = 44.1 bits (22), Expect = 0.14 Identities = 22/22 (100%) Strand = Plus / Plus Query: 63 cggccaggagcggcggccgcgg 84 |||||||||||||||||||||| Sbjct: 44491 cggccaggagcggcggccgcgg 44512
>dbj|AP003023.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0684B02 Length = 132470 Score = 44.1 bits (22), Expect = 0.14 Identities = 22/22 (100%) Strand = Plus / Plus Query: 63 cggccaggagcggcggccgcgg 84 |||||||||||||||||||||| Sbjct: 111415 cggccaggagcggcggccgcgg 111436
>dbj|AK064946.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013000P16, full insert sequence Length = 1980 Score = 44.1 bits (22), Expect = 0.14 Identities = 22/22 (100%) Strand = Plus / Plus Query: 63 cggccaggagcggcggccgcgg 84 |||||||||||||||||||||| Sbjct: 1176 cggccaggagcggcggccgcgg 1197
>ref|XM_323845.1| Neurospora crassa OR74A predicted protein (NCU04493.1) partial mRNA Length = 519 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 gcagcagcggtggccgcaaa 119 |||||||||||||||||||| Sbjct: 50 gcagcagcggtggccgcaaa 31
>ref|XM_951969.1| Neurospora crassa OR74A hypothetical protein (NCU04493.1) partial mRNA Length = 519 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 gcagcagcggtggccgcaaa 119 |||||||||||||||||||| Sbjct: 50 gcagcagcggtggccgcaaa 31
>ref|NM_008452.1| Mus musculus Kruppel-like factor 2 (lung) (Klf2), mRNA Length = 1538 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ggccaggagcggcggccgcg 83 |||||||||||||||||||| Sbjct: 836 ggccaggagcggcggccgcg 817
>ref|NM_001007684.1| Rattus norvegicus Kruppel-like factor 2 (lung) (predicted) (Klf2_predicted), mRNA Length = 1056 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ggccaggagcggcggccgcg 83 |||||||||||||||||||| Sbjct: 782 ggccaggagcggcggccgcg 763
>dbj|AK131962.1| Mus musculus ES cells cDNA, RIKEN full-length enriched library, clone:2410149J18 product:Kruppel-like factor 2 (lung), full insert sequence Length = 1818 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ggccaggagcggcggccgcg 83 |||||||||||||||||||| Sbjct: 808 ggccaggagcggcggccgcg 789
>ref|XM_579181.1| PREDICTED: Rattus norvegicus Kruppel-like factor (Klf2), mRNA Length = 1056 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ggccaggagcggcggccgcg 83 |||||||||||||||||||| Sbjct: 782 ggccaggagcggcggccgcg 763
>gb|AF181251.1|AF181251 Rattus norvegicus lung Kruppel-like factor (Lklf) gene, complete cds Length = 3026 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ggccaggagcggcggccgcg 83 |||||||||||||||||||| Sbjct: 1740 ggccaggagcggcggccgcg 1721
>dbj|BA000012.4| Mesorhizobium loti MAFF303099 DNA, complete genome Length = 7036071 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 97 cttgcagcagcggtggccgc 116 |||||||||||||||||||| Sbjct: 5369236 cttgcagcagcggtggccgc 5369217
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 ggagcggcggccgcggtagc 88 |||||||||||||||||||| Sbjct: 4482697 ggagcggcggccgcggtagc 4482678
>gb|AF129002.1|AF129002 Mus musculus lung Kruppel-like factor gene, promoter region and partial cds Length = 3392 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ggccaggagcggcggccgcg 83 |||||||||||||||||||| Sbjct: 3100 ggccaggagcggcggccgcg 3081
>gb|AC113182.14| Mus musculus chromosome 8, clone RP23-39F24, complete sequence Length = 217373 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 64 ggccaggagcggcggccgcg 83 |||||||||||||||||||| Sbjct: 157190 ggccaggagcggcggccgcg 157209
>gb|U25096.1|MMU25096 Mus musculus Kruppel-like factor LKLF mRNA, complete cds Length = 1538 Score = 40.1 bits (20), Expect = 2.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 ggccaggagcggcggccgcg 83 |||||||||||||||||||| Sbjct: 836 ggccaggagcggcggccgcg 817
>ref|NM_002518.3| Homo sapiens neuronal PAS domain protein 2 (NPAS2), mRNA Length = 4004 Score = 38.2 bits (19), Expect = 8.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 ccaggagcggcggccgcgg 84 ||||||||||||||||||| Sbjct: 59 ccaggagcggcggccgcgg 77
>gb|BC072383.1| Homo sapiens neuronal PAS domain protein 2, mRNA (cDNA clone MGC:71151 IMAGE:6371187), complete cds Length = 3216 Score = 38.2 bits (19), Expect = 8.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 ccaggagcggcggccgcgg 84 ||||||||||||||||||| Sbjct: 26 ccaggagcggcggccgcgg 44
>gb|BC051351.1| Homo sapiens neuronal PAS domain protein 2, mRNA (cDNA clone MGC:59643 IMAGE:6538324), complete cds Length = 3935 Score = 38.2 bits (19), Expect = 8.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 ccaggagcggcggccgcgg 84 ||||||||||||||||||| Sbjct: 23 ccaggagcggcggccgcgg 41
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 38.2 bits (19), Expect = 8.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 76 cggccgcggtagctcgggg 94 ||||||||||||||||||| Sbjct: 2077526 cggccgcggtagctcgggg 2077544
>gb|AC092168.4| Homo sapiens BAC clone RP11-784K9 from 2, complete sequence Length = 199871 Score = 38.2 bits (19), Expect = 8.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 ccaggagcggcggccgcgg 84 ||||||||||||||||||| Sbjct: 145205 ccaggagcggcggccgcgg 145223
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 38.2 bits (19), Expect = 8.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 65 gccaggagcggcggccgcg 83 ||||||||||||||||||| Sbjct: 4522727 gccaggagcggcggccgcg 4522709
>emb|CT010584.19| Mouse DNA sequence from clone RP23-383B20 on chromosome 16, complete sequence Length = 199010 Score = 38.2 bits (19), Expect = 8.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 93 ggagcttgcagcagcggtg 111 ||||||||||||||||||| Sbjct: 26486 ggagcttgcagcagcggtg 26504
>gb|U77970.1|HSU77970 Human neuronal PAS2 (NPAS2) mRNA, complete cds Length = 2880 Score = 38.2 bits (19), Expect = 8.6 Identities = 19/19 (100%) Strand = Plus / Plus Query: 66 ccaggagcggcggccgcgg 84 ||||||||||||||||||| Sbjct: 59 ccaggagcggcggccgcgg 77
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 38.2 bits (19), Expect = 8.6 Identities = 19/19 (100%) Strand = Plus / Minus Query: 99 tgcagcagcggtggccgca 117 ||||||||||||||||||| Sbjct: 1054876 tgcagcagcggtggccgca 1054858 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 865,797 Number of Sequences: 3902068 Number of extensions: 865797 Number of successful extensions: 59446 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 58678 Number of HSP's gapped (non-prelim): 766 length of query: 175 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 153 effective length of database: 17,147,199,772 effective search space: 2623521565116 effective search space used: 2623521565116 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)