Clone Name | basd2d12 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | CLAT_HUMAN (P28329) Choline O-acetyltransferase (EC 2.3.1.6) (CH... | 31 | 2.3 | 2 | ZN580_MOUSE (Q9DB38) Zinc finger protein 580 | 30 | 3.0 | 3 | CCSA_PINTH (P41650) Cytochrome c biogenesis protein ccsA | 29 | 6.7 | 4 | NHR71_CAEEL (Q9GTD4) Nuclear hormone receptor family member nhr-71 | 29 | 8.7 | 5 | MDLB_PSEPU (P20932) L(+)-mandelate dehydrogenase (EC 1.-.-.-) (S... | 29 | 8.7 |
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>CLAT_HUMAN (P28329) Choline O-acetyltransferase (EC 2.3.1.6) (CHOACTase)| (Choline acetylase) (ChAT) Length = 748 Score = 30.8 bits (68), Expect = 2.3 Identities = 20/62 (32%), Positives = 25/62 (40%) Frame = -2 Query: 302 ASL*GGTLPYRCILTSHSFGRSLSPVHLQRKGARSVSYYALFKGWLLLGKPPGCLCTPTS 123 ASL G L Y+ +L SHS + L + YY LF + L G L S Sbjct: 236 ASLISGVLSYKALLDSHSIPTDCAKGQLSGQPLCMKQYYGLFSSYRLPGHTQDTLVAQNS 295 Query: 122 FI 117 I Sbjct: 296 SI 297
>ZN580_MOUSE (Q9DB38) Zinc finger protein 580| Length = 172 Score = 30.4 bits (67), Expect = 3.0 Identities = 12/23 (52%), Positives = 15/23 (65%) Frame = +1 Query: 373 IQCPENPRFPPQGSSTEGESGPK 441 +Q E PR PPQ +T GE GP+ Sbjct: 67 VQLEEEPRGPPQREATPGEPGPR 89
>CCSA_PINTH (P41650) Cytochrome c biogenesis protein ccsA| Length = 320 Score = 29.3 bits (64), Expect = 6.7 Identities = 31/97 (31%), Positives = 39/97 (40%) Frame = -2 Query: 362 VFVTQADILASASSTPAFAVASL*GGTLPYRCILTSHSFGRSLSPVHLQRKGARSVSYYA 183 +F+T ILA S + V + GTL YR S S G+ + L G Sbjct: 2 IFITLEHILAHISFSLILVVTLIYWGTLVYRIEGLSSSGGKGMIVTFLCTTG-------L 54 Query: 182 LFKGWLLLGKPPGCLCTPTSFITERSFRGLSW*SGLF 72 L WL G P S + E SF LSW S +F Sbjct: 55 LINRWLYSGH------LPLSNLYE-SFMFLSWSSSVF 84
>NHR71_CAEEL (Q9GTD4) Nuclear hormone receptor family member nhr-71| Length = 579 Score = 28.9 bits (63), Expect = 8.7 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +2 Query: 212 CAEDERG*AICRSCGMSKCIGRGAFRLRGKQPRK 313 C D G CRSC +KCI G ++ QPR+ Sbjct: 53 CLIDPDGRCACRSCRFTKCIEAG-MKIGAVQPRR 85
>MDLB_PSEPU (P20932) L(+)-mandelate dehydrogenase (EC 1.-.-.-) (S-mandelate| dehydrogenase) (MDH) Length = 393 Score = 28.9 bits (63), Expect = 8.7 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 301 ATAKAGVDEAEARMSA*VTKTLVRIQCPENPRFPPQGSSTEG 426 A + GVDE + A + +TL +I CP+ P EG Sbjct: 335 ARGETGVDEVLTLLKADIDRTLAQIGCPDITSLSPDYLQNEG 376 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,401,961 Number of Sequences: 219361 Number of extensions: 1450141 Number of successful extensions: 3814 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 3656 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3814 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3869946934 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)