ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | basd2d02 |
|---|---|
| Clone Library Name | barley_pub |
>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)| Length = 1262 Score = 34.7 bits (78), Expect = 0.25 Identities = 26/81 (32%), Positives = 31/81 (38%) Frame = +2 Query: 95 GHPGVERCPFLRNINGATTFSFSSALPVAARGGKGPIFEDGPGFESAFKLFHGQDGIVPL 274 G PG P R + G+ P RG GP GP + GQDG L Sbjct: 479 GTPGERGSPGFRGLPGSNGLPGEKG-PAGERGSPGPPGPSGPAGD------RGQDGGPGL 531 Query: 275 SGRSYVPDENGSESTDVKPEP 337 G +P GS +D KP P Sbjct: 532 PGMRGLPGIPGSPGSDGKPGP 552
>CO8A2_HUMAN (P25067) Collagen alpha-2(VIII) chain precursor (Endothelial| collagen) Length = 703 Score = 33.9 bits (76), Expect = 0.42 Identities = 28/84 (33%), Positives = 34/84 (40%) Frame = +2 Query: 95 GHPGVERCPFLRNINGATTFSFSSALPVAARGGKGPIFEDGPGFESAFKLFHGQDGIVPL 274 G PG E+ P + + G S+ LP RG GP E GPG G G L Sbjct: 346 GEPG-EQGP--QGLGGPPGLPGSAGLP-GRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGL 401 Query: 275 SGRSYVPDENGSESTDVKPEPALP 346 +G+ VP E G P P P Sbjct: 402 AGKPGVPGERGLPGAHGPPGPTGP 425
>CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)| Length = 1027 Score = 32.7 bits (73), Expect = 0.94 Identities = 21/64 (32%), Positives = 27/64 (42%) Frame = +2 Query: 185 RGGKGPIFEDGPGFESAFKLFHGQDGIVPLSGRSYVPDENGSESTDVKPEPALPFNPLAA 364 RGG GP+ G G G G LSG ++G++ D P PA P P+ Sbjct: 75 RGGIGPMGPRGAGGMPGMPGPKGHRGFRGLSGSKGEQGKSGNQGPDGGPGPAGPSGPIGP 134 Query: 365 RAAT 376 R T Sbjct: 135 RGQT 138 Score = 30.0 bits (66), Expect = 6.1 Identities = 16/46 (34%), Positives = 22/46 (47%) Frame = -3 Query: 231 DSKPGPSSKIGPLPPRAATGKAEENEKVVAPLMFLRNGHLSTPGWP 94 D PGP+ GP+ PR TG+ + K P + +G PG P Sbjct: 120 DGGPGPAGPSGPIGPRGQTGERGRDGKSGLPGLRGVDGLAGPPGPP 165
>RPOB_UREPA (Q9PQV6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP| beta subunit) (Transcriptase beta chain) (RNA polymerase beta subunit) Length = 1434 Score = 32.3 bits (72), Expect = 1.2 Identities = 16/32 (50%), Positives = 20/32 (62%) Frame = +2 Query: 227 ESAFKLFHGQDGIVPLSGRSYVPDENGSESTD 322 +S+ K+ HGQ+GIV R DENGSE D Sbjct: 1030 DSSLKVKHGQEGIVAAVKRIKSSDENGSELPD 1061
>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor| Length = 1464 Score = 32.0 bits (71), Expect = 1.6 Identities = 23/83 (27%), Positives = 32/83 (38%) Frame = +2 Query: 92 SGHPGVERCPFLRNINGATTFSFSSALPVAARGGKGPIFEDGPGFESAFKLFHGQDGIVP 271 +G+PG + P + NGA + + P G +GP GPG K G+ G Sbjct: 385 AGNPGADGQPGAKGANGAPGIAGAPGFP----GARGPSGPQGPGGPPGPKGNSGEPGAPG 440 Query: 272 LSGRSYVPDENGSESTDVKPEPA 340 G + E G P PA Sbjct: 441 SKGDTGAKGEPGPVGVQGPPGPA 463
>PARA_TRYBB (P18764) Procyclic form-specific polypeptide A-alpha precursor| (Procyclin A-alpha) (PARP A-alpha) Length = 114 Score = 31.6 bits (70), Expect = 2.1 Identities = 29/81 (35%), Positives = 34/81 (41%), Gaps = 14/81 (17%) Frame = +2 Query: 164 SALPVAARGGKGPIFEDGP------GFESAFKLFHGQDGIVPLSGRSYVPDENGSESTDV 325 SA V +GGKG EDGP G E G + P P+E G E T+ Sbjct: 31 SASNVIVKGGKGKEREDGPEEPEETGPEETGPEETGPEETGP---EETGPEETGPEETEP 87 Query: 326 KPEP--------ALPFNPLAA 364 +PEP ALPF AA Sbjct: 88 EPEPGAATLKSVALPFAVAAA 108
>CO9A1_HUMAN (P20849) Collagen alpha-1(IX) chain precursor| Length = 921 Score = 31.2 bits (69), Expect = 2.7 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 3/90 (3%) Frame = -3 Query: 354 GLKGRAG-SGLTSVLSLPFSSGTYDLPERGTIPSCPWKSLNADS--KPGPSSKIGPLPPR 184 G G AG GL V +P + G P P + N+ + GP ++GP P+ Sbjct: 562 GPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQ 621 Query: 183 AATGKAEENEKVVAPLMFLRNGHLSTPGWP 94 G E V +P + + G L +PG P Sbjct: 622 GLPGSRGELGPVGSPGLPGKLGSLGSPGLP 651
>NEK9_HUMAN (Q8TD19) Serine/threonine-protein kinase Nek9 (EC 2.7.11.1)| (NimA-related protein kinase 9) (Never in mitosis A-related kinase 9) (Nercc1 kinase) (NIMA-related kinase 8) (Nek8) Length = 979 Score = 31.2 bits (69), Expect = 2.7 Identities = 19/53 (35%), Positives = 24/53 (45%) Frame = -3 Query: 231 DSKPGPSSKIGPLPPRAATGKAEENEKVVAPLMFLRNGHLSTPGWPEKFSDDA 73 DS PGPS+ GP RA G AE+ E P+ L G + DD+ Sbjct: 27 DSSPGPSASQGP---RAGGGAAEQEELHYIPIRVLGRGAFGEATLYRRTEDDS 76
>ZFY1_MOUSE (P10925) Zinc finger Y-chromosomal protein 1| Length = 782 Score = 30.8 bits (68), Expect = 3.6 Identities = 27/86 (31%), Positives = 36/86 (41%) Frame = -1 Query: 323 HQCSHCRSHQAHMIFLKGGLSHPVHGKA*MPTQSLVHPQRSDPCLPGQLQAKQKKMKRLW 144 HQCSHC ++ LK + VH KA +P + D C G + + K K + Sbjct: 611 HQCSHCNHKSSNSSDLKRHII-SVHTKA--------YPHKCDMCSKGFHRPSELK-KHVA 660 Query: 143 LH*CSSGMGISQHRDGQKSSPMTLSH 66 H S M +H D P LSH Sbjct: 661 TH-KSKKMHQCRHCDFNSPDPFLLSH 685
>ZFY2_MOUSE (P20662) Zinc finger Y-chromosomal protein 2| Length = 783 Score = 30.8 bits (68), Expect = 3.6 Identities = 27/86 (31%), Positives = 36/86 (41%) Frame = -1 Query: 323 HQCSHCRSHQAHMIFLKGGLSHPVHGKA*MPTQSLVHPQRSDPCLPGQLQAKQKKMKRLW 144 HQCSHC ++ LK + VH KA +P + D C G + + K K + Sbjct: 611 HQCSHCNHKSSNSSDLKRHII-SVHTKA--------YPHKCDMCSKGFHRPSELK-KHVA 660 Query: 143 LH*CSSGMGISQHRDGQKSSPMTLSH 66 H S M +H D P LSH Sbjct: 661 TH-KSKKMHQCRHCDFNSPDPFLLSH 685
>CAND_DROME (P27398) Calpain D (EC 3.4.22.-) (Calcium-activated neutral| proteinase D) (CANP D) (Small optic lobes protein) Length = 1594 Score = 30.8 bits (68), Expect = 3.6 Identities = 15/46 (32%), Positives = 24/46 (52%) Frame = +1 Query: 400 IWVQLL*WQGQKAEQEAQQSRPVTQEAQQAKSEFHETKRRQPTVPR 537 +W+Q KAEQ+ QQ + Q+ QQ + H +++Q PR Sbjct: 659 LWLQTCEMCEAKAEQQQQQLQLQQQQQQQQQHHHHHLQQQQAEAPR 704
>GATA5_MOUSE (P97489) Transcription factor GATA-5 (GATA-binding factor 5)| Length = 404 Score = 30.8 bits (68), Expect = 3.6 Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 3/91 (3%) Frame = +2 Query: 68 DSASSENFSGHPGVERCPFLRNINGATTFSFSSALPVAARGGKGPIFEDGPGFESAFKLF 247 DS++ + S HP P GATTF F+ + P + GG + DG F+ A L Sbjct: 71 DSSAFGSGSPHPPAAHPP------GATTFPFAHSPPGSGSGGSAGV-RDGGAFQGA--LL 121 Query: 248 HGQDGIVPLS---GRSYVPDENGSESTDVKP 331 + PL G SY S+DV P Sbjct: 122 AREQYPTPLGRPMGASYPTTYPAYMSSDVAP 152
>BLM_DROME (Q9VGI8) Bloom syndrome protein homolog (EC 3.6.1.-) (Dmblm)| (Mutagen-sensitive protein 309) (RecQ helicase homolog) Length = 1487 Score = 30.4 bits (67), Expect = 4.6 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 4/90 (4%) Frame = +2 Query: 131 NINGATTFSFSSALPVAARGGKGPIFEDGP----GFESAFKLFHGQDGIVPLSGRSYVPD 298 N+ +T SS P +G +FED P E +KL ++ +P + + Sbjct: 260 NLASISTLLDSSRAPNTYKGSSRNLFEDSPEKSGSGEQGYKLGSAKENEIPTKPATASLE 319 Query: 299 ENGSESTDVKPEPALPFNPLAARAATISLS 388 N S+ P PA P P + A SL+ Sbjct: 320 RNSVTSS---PSPAAPLKPRYSVAFDNSLA 346
>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 30.4 bits (67), Expect = 4.6 Identities = 22/83 (26%), Positives = 32/83 (38%) Frame = +2 Query: 92 SGHPGVERCPFLRNINGATTFSFSSALPVAARGGKGPIFEDGPGFESAFKLFHGQDGIVP 271 +G+PG + P + NGA + + P G +GP GP K G+ G Sbjct: 374 AGNPGADGQPGAKGANGAPGIAGAPGFP----GARGPSGPQGPSGPPGPKGNSGEPGAPG 429 Query: 272 LSGRSYVPDENGSESTDVKPEPA 340 G + E G+ P PA Sbjct: 430 NKGDTGAKGEPGATGVQGPPGPA 452
>NUMBL_HUMAN (Q9Y6R0) Numb-like protein (Numb-R)| Length = 609 Score = 30.4 bits (67), Expect = 4.6 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%) Frame = -3 Query: 198 PLPPRAATGKAEENEKVVAPLMFLRNGHLSTPG----WPEKFSDDAESQNR 58 P PP A TG + E V P + GH TP W E+ S A++Q + Sbjct: 379 PGPPPATTGTSAWGEPSVPPAAAFQPGHKRTPSEAERWLEEVSQVAKAQQQ 429
>SEM6A_HUMAN (Q9H2E6) Semaphorin-6A precursor (Semaphorin VIA) (Sema VIA)| (Semaphorin 6A-1) (SEMA6A-1) Length = 1030 Score = 30.0 bits (66), Expect = 6.1 Identities = 18/52 (34%), Positives = 27/52 (51%) Frame = -3 Query: 171 KAEENEKVVAPLMFLRNGHLSTPGWPEKFSDDAESQNRLLKSIPSSSHWPTL 16 K + E ++ PLM NG L+TPG K A+ + L ++P+ PTL Sbjct: 715 KDPKPEAILTPLM--HNGKLATPGNTAKMLIKADQHHLDLTALPTPESTPTL 764
>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor| Length = 1453 Score = 30.0 bits (66), Expect = 6.1 Identities = 22/83 (26%), Positives = 31/83 (37%) Frame = +2 Query: 92 SGHPGVERCPFLRNINGATTFSFSSALPVAARGGKGPIFEDGPGFESAFKLFHGQDGIVP 271 +G+PG + P + NGA + + P G +GP GP K G+ G Sbjct: 374 AGNPGADGQPGAKGANGAPGIAGAPGFP----GARGPSGPQGPSGAPGPKGTSGEPGAPG 429 Query: 272 LSGRSYVPDENGSESTDVKPEPA 340 G + E G P PA Sbjct: 430 NKGDTGAKGEPGPAGVQGPPGPA 452
>NEK9_MOUSE (Q8K1R7) Serine/threonine-protein kinase Nek9 (EC 2.7.11.1)| (NimA-related protein kinase 9) (Never in mitosis A-related kinase 9) Length = 984 Score = 29.6 bits (65), Expect = 7.9 Identities = 19/53 (35%), Positives = 24/53 (45%) Frame = -3 Query: 231 DSKPGPSSKIGPLPPRAATGKAEENEKVVAPLMFLRNGHLSTPGWPEKFSDDA 73 DS PGPS+ GP RA G AE+ E P+ L G + DD+ Sbjct: 27 DSGPGPSAVPGP---RAGGGAAEQEELHYIPIRVLGRGAFGEATLYRRTEDDS 76
>CO9A1_CHICK (P12106) Collagen alpha-1(IX) chain precursor| Length = 920 Score = 29.6 bits (65), Expect = 7.9 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%) Frame = +2 Query: 185 RGGKGPIFEDGPGFESAFKLFHGQDGIVPLSGRSYVPDENGSES----TDVKPEPALPFN 352 +G +GP+ E+GP E + G +G+ G S +P +G E K EP P Sbjct: 502 QGQRGPVGEEGPKGERGPQGTRGINGLPGPKGESGLPGVDGREGIPGMPGAKGEPGKPGT 561 Query: 353 P 355 P Sbjct: 562 P 562 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 99,716,820 Number of Sequences: 219361 Number of extensions: 2126577 Number of successful extensions: 7321 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 6572 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 7302 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5995743495 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
