ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name basd2d02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Frag... 35 0.25
2CO8A2_HUMAN (P25067) Collagen alpha-2(VIII) chain precursor (End... 34 0.42
3CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment) 33 0.94
4RPOB_UREPA (Q9PQV6) DNA-directed RNA polymerase beta chain (EC 2... 32 1.2
5CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor 32 1.6
6PARA_TRYBB (P18764) Procyclic form-specific polypeptide A-alpha ... 32 2.1
7CO9A1_HUMAN (P20849) Collagen alpha-1(IX) chain precursor 31 2.7
8NEK9_HUMAN (Q8TD19) Serine/threonine-protein kinase Nek9 (EC 2.7... 31 2.7
9ZFY1_MOUSE (P10925) Zinc finger Y-chromosomal protein 1 31 3.6
10ZFY2_MOUSE (P20662) Zinc finger Y-chromosomal protein 2 31 3.6
11CAND_DROME (P27398) Calpain D (EC 3.4.22.-) (Calcium-activated n... 31 3.6
12GATA5_MOUSE (P97489) Transcription factor GATA-5 (GATA-binding f... 31 3.6
13BLM_DROME (Q9VGI8) Bloom syndrome protein homolog (EC 3.6.1.-) (... 30 4.6
14CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor 30 4.6
15NUMBL_HUMAN (Q9Y6R0) Numb-like protein (Numb-R) 30 4.6
16SEM6A_HUMAN (Q9H2E6) Semaphorin-6A precursor (Semaphorin VIA) (S... 30 6.1
17CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor 30 6.1
18NEK9_MOUSE (Q8K1R7) Serine/threonine-protein kinase Nek9 (EC 2.7... 30 7.9
19CO9A1_CHICK (P12106) Collagen alpha-1(IX) chain precursor 30 7.9

>CO3A1_CHICK (P12105) Collagen alpha-1(III) chain precursor (Fragments)|
          Length = 1262

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 26/81 (32%), Positives = 31/81 (38%)
 Frame = +2

Query: 95  GHPGVERCPFLRNINGATTFSFSSALPVAARGGKGPIFEDGPGFESAFKLFHGQDGIVPL 274
           G PG    P  R + G+         P   RG  GP    GP  +       GQDG   L
Sbjct: 479 GTPGERGSPGFRGLPGSNGLPGEKG-PAGERGSPGPPGPSGPAGD------RGQDGGPGL 531

Query: 275 SGRSYVPDENGSESTDVKPEP 337
            G   +P   GS  +D KP P
Sbjct: 532 PGMRGLPGIPGSPGSDGKPGP 552



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>CO8A2_HUMAN (P25067) Collagen alpha-2(VIII) chain precursor (Endothelial|
           collagen)
          Length = 703

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 28/84 (33%), Positives = 34/84 (40%)
 Frame = +2

Query: 95  GHPGVERCPFLRNINGATTFSFSSALPVAARGGKGPIFEDGPGFESAFKLFHGQDGIVPL 274
           G PG E+ P  + + G      S+ LP   RG  GP  E GPG         G  G   L
Sbjct: 346 GEPG-EQGP--QGLGGPPGLPGSAGLP-GRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGL 401

Query: 275 SGRSYVPDENGSESTDVKPEPALP 346
           +G+  VP E G       P P  P
Sbjct: 402 AGKPGVPGERGLPGAHGPPGPTGP 425



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>CAFF_RIFPA (P30754) Fibril-forming collagen alpha chain (Fragment)|
          Length = 1027

 Score = 32.7 bits (73), Expect = 0.94
 Identities = 21/64 (32%), Positives = 27/64 (42%)
 Frame = +2

Query: 185 RGGKGPIFEDGPGFESAFKLFHGQDGIVPLSGRSYVPDENGSESTDVKPEPALPFNPLAA 364
           RGG GP+   G G         G  G   LSG      ++G++  D  P PA P  P+  
Sbjct: 75  RGGIGPMGPRGAGGMPGMPGPKGHRGFRGLSGSKGEQGKSGNQGPDGGPGPAGPSGPIGP 134

Query: 365 RAAT 376
           R  T
Sbjct: 135 RGQT 138



 Score = 30.0 bits (66), Expect = 6.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -3

Query: 231 DSKPGPSSKIGPLPPRAATGKAEENEKVVAPLMFLRNGHLSTPGWP 94
           D  PGP+   GP+ PR  TG+   + K   P +   +G    PG P
Sbjct: 120 DGGPGPAGPSGPIGPRGQTGERGRDGKSGLPGLRGVDGLAGPPGPP 165



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>RPOB_UREPA (Q9PQV6) DNA-directed RNA polymerase beta chain (EC 2.7.7.6) (RNAP|
            beta subunit) (Transcriptase beta chain) (RNA polymerase
            beta subunit)
          Length = 1434

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 227  ESAFKLFHGQDGIVPLSGRSYVPDENGSESTD 322
            +S+ K+ HGQ+GIV    R    DENGSE  D
Sbjct: 1030 DSSLKVKHGQEGIVAAVKRIKSSDENGSELPD 1061



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>CO1A1_HUMAN (P02452) Collagen alpha-1(I) chain precursor|
          Length = 1464

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 23/83 (27%), Positives = 32/83 (38%)
 Frame = +2

Query: 92  SGHPGVERCPFLRNINGATTFSFSSALPVAARGGKGPIFEDGPGFESAFKLFHGQDGIVP 271
           +G+PG +  P  +  NGA   + +   P    G +GP    GPG     K   G+ G   
Sbjct: 385 AGNPGADGQPGAKGANGAPGIAGAPGFP----GARGPSGPQGPGGPPGPKGNSGEPGAPG 440

Query: 272 LSGRSYVPDENGSESTDVKPEPA 340
             G +    E G       P PA
Sbjct: 441 SKGDTGAKGEPGPVGVQGPPGPA 463



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>PARA_TRYBB (P18764) Procyclic form-specific polypeptide A-alpha precursor|
           (Procyclin A-alpha) (PARP A-alpha)
          Length = 114

 Score = 31.6 bits (70), Expect = 2.1
 Identities = 29/81 (35%), Positives = 34/81 (41%), Gaps = 14/81 (17%)
 Frame = +2

Query: 164 SALPVAARGGKGPIFEDGP------GFESAFKLFHGQDGIVPLSGRSYVPDENGSESTDV 325
           SA  V  +GGKG   EDGP      G E       G +   P       P+E G E T+ 
Sbjct: 31  SASNVIVKGGKGKEREDGPEEPEETGPEETGPEETGPEETGP---EETGPEETGPEETEP 87

Query: 326 KPEP--------ALPFNPLAA 364
           +PEP        ALPF   AA
Sbjct: 88  EPEPGAATLKSVALPFAVAAA 108



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>CO9A1_HUMAN (P20849) Collagen alpha-1(IX) chain precursor|
          Length = 921

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
 Frame = -3

Query: 354 GLKGRAG-SGLTSVLSLPFSSGTYDLPERGTIPSCPWKSLNADS--KPGPSSKIGPLPPR 184
           G  G AG  GL  V  +P + G          P  P +  N+    + GP  ++GP  P+
Sbjct: 562 GPPGDAGLQGLPGVPGIPGAKGVAGEKGSTGAPGKPGQMGNSGKPGQQGPPGEVGPRGPQ 621

Query: 183 AATGKAEENEKVVAPLMFLRNGHLSTPGWP 94
              G   E   V +P +  + G L +PG P
Sbjct: 622 GLPGSRGELGPVGSPGLPGKLGSLGSPGLP 651



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>NEK9_HUMAN (Q8TD19) Serine/threonine-protein kinase Nek9 (EC 2.7.11.1)|
           (NimA-related protein kinase 9) (Never in mitosis
           A-related kinase 9) (Nercc1 kinase) (NIMA-related kinase
           8) (Nek8)
          Length = 979

 Score = 31.2 bits (69), Expect = 2.7
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = -3

Query: 231 DSKPGPSSKIGPLPPRAATGKAEENEKVVAPLMFLRNGHLSTPGWPEKFSDDA 73
           DS PGPS+  GP   RA  G AE+ E    P+  L  G         +  DD+
Sbjct: 27  DSSPGPSASQGP---RAGGGAAEQEELHYIPIRVLGRGAFGEATLYRRTEDDS 76



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>ZFY1_MOUSE (P10925) Zinc finger Y-chromosomal protein 1|
          Length = 782

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 27/86 (31%), Positives = 36/86 (41%)
 Frame = -1

Query: 323 HQCSHCRSHQAHMIFLKGGLSHPVHGKA*MPTQSLVHPQRSDPCLPGQLQAKQKKMKRLW 144
           HQCSHC    ++   LK  +   VH KA        +P + D C  G  +  + K K + 
Sbjct: 611 HQCSHCNHKSSNSSDLKRHII-SVHTKA--------YPHKCDMCSKGFHRPSELK-KHVA 660

Query: 143 LH*CSSGMGISQHRDGQKSSPMTLSH 66
            H  S  M   +H D     P  LSH
Sbjct: 661 TH-KSKKMHQCRHCDFNSPDPFLLSH 685



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>ZFY2_MOUSE (P20662) Zinc finger Y-chromosomal protein 2|
          Length = 783

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 27/86 (31%), Positives = 36/86 (41%)
 Frame = -1

Query: 323 HQCSHCRSHQAHMIFLKGGLSHPVHGKA*MPTQSLVHPQRSDPCLPGQLQAKQKKMKRLW 144
           HQCSHC    ++   LK  +   VH KA        +P + D C  G  +  + K K + 
Sbjct: 611 HQCSHCNHKSSNSSDLKRHII-SVHTKA--------YPHKCDMCSKGFHRPSELK-KHVA 660

Query: 143 LH*CSSGMGISQHRDGQKSSPMTLSH 66
            H  S  M   +H D     P  LSH
Sbjct: 661 TH-KSKKMHQCRHCDFNSPDPFLLSH 685



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>CAND_DROME (P27398) Calpain D (EC 3.4.22.-) (Calcium-activated neutral|
           proteinase D) (CANP D) (Small optic lobes protein)
          Length = 1594

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = +1

Query: 400 IWVQLL*WQGQKAEQEAQQSRPVTQEAQQAKSEFHETKRRQPTVPR 537
           +W+Q       KAEQ+ QQ +   Q+ QQ +   H  +++Q   PR
Sbjct: 659 LWLQTCEMCEAKAEQQQQQLQLQQQQQQQQQHHHHHLQQQQAEAPR 704



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>GATA5_MOUSE (P97489) Transcription factor GATA-5 (GATA-binding factor 5)|
          Length = 404

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 3/91 (3%)
 Frame = +2

Query: 68  DSASSENFSGHPGVERCPFLRNINGATTFSFSSALPVAARGGKGPIFEDGPGFESAFKLF 247
           DS++  + S HP     P      GATTF F+ + P +  GG   +  DG  F+ A  L 
Sbjct: 71  DSSAFGSGSPHPPAAHPP------GATTFPFAHSPPGSGSGGSAGV-RDGGAFQGA--LL 121

Query: 248 HGQDGIVPLS---GRSYVPDENGSESTDVKP 331
             +    PL    G SY        S+DV P
Sbjct: 122 AREQYPTPLGRPMGASYPTTYPAYMSSDVAP 152



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>BLM_DROME (Q9VGI8) Bloom syndrome protein homolog (EC 3.6.1.-) (Dmblm)|
           (Mutagen-sensitive protein 309) (RecQ helicase homolog)
          Length = 1487

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 24/90 (26%), Positives = 37/90 (41%), Gaps = 4/90 (4%)
 Frame = +2

Query: 131 NINGATTFSFSSALPVAARGGKGPIFEDGP----GFESAFKLFHGQDGIVPLSGRSYVPD 298
           N+   +T   SS  P   +G    +FED P      E  +KL   ++  +P    +   +
Sbjct: 260 NLASISTLLDSSRAPNTYKGSSRNLFEDSPEKSGSGEQGYKLGSAKENEIPTKPATASLE 319

Query: 299 ENGSESTDVKPEPALPFNPLAARAATISLS 388
            N   S+   P PA P  P  + A   SL+
Sbjct: 320 RNSVTSS---PSPAAPLKPRYSVAFDNSLA 346



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>CO1A1_MOUSE (P11087) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 22/83 (26%), Positives = 32/83 (38%)
 Frame = +2

Query: 92  SGHPGVERCPFLRNINGATTFSFSSALPVAARGGKGPIFEDGPGFESAFKLFHGQDGIVP 271
           +G+PG +  P  +  NGA   + +   P    G +GP    GP      K   G+ G   
Sbjct: 374 AGNPGADGQPGAKGANGAPGIAGAPGFP----GARGPSGPQGPSGPPGPKGNSGEPGAPG 429

Query: 272 LSGRSYVPDENGSESTDVKPEPA 340
             G +    E G+      P PA
Sbjct: 430 NKGDTGAKGEPGATGVQGPPGPA 452



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>NUMBL_HUMAN (Q9Y6R0) Numb-like protein (Numb-R)|
          Length = 609

 Score = 30.4 bits (67), Expect = 4.6
 Identities = 18/51 (35%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
 Frame = -3

Query: 198 PLPPRAATGKAEENEKVVAPLMFLRNGHLSTPG----WPEKFSDDAESQNR 58
           P PP A TG +   E  V P    + GH  TP     W E+ S  A++Q +
Sbjct: 379 PGPPPATTGTSAWGEPSVPPAAAFQPGHKRTPSEAERWLEEVSQVAKAQQQ 429



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>SEM6A_HUMAN (Q9H2E6) Semaphorin-6A precursor (Semaphorin VIA) (Sema VIA)|
           (Semaphorin 6A-1) (SEMA6A-1)
          Length = 1030

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -3

Query: 171 KAEENEKVVAPLMFLRNGHLSTPGWPEKFSDDAESQNRLLKSIPSSSHWPTL 16
           K  + E ++ PLM   NG L+TPG   K    A+  +  L ++P+    PTL
Sbjct: 715 KDPKPEAILTPLM--HNGKLATPGNTAKMLIKADQHHLDLTALPTPESTPTL 764



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>CO1A1_RAT (P02454) Collagen alpha-1(I) chain precursor|
          Length = 1453

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 22/83 (26%), Positives = 31/83 (37%)
 Frame = +2

Query: 92  SGHPGVERCPFLRNINGATTFSFSSALPVAARGGKGPIFEDGPGFESAFKLFHGQDGIVP 271
           +G+PG +  P  +  NGA   + +   P    G +GP    GP      K   G+ G   
Sbjct: 374 AGNPGADGQPGAKGANGAPGIAGAPGFP----GARGPSGPQGPSGAPGPKGTSGEPGAPG 429

Query: 272 LSGRSYVPDENGSESTDVKPEPA 340
             G +    E G       P PA
Sbjct: 430 NKGDTGAKGEPGPAGVQGPPGPA 452



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>NEK9_MOUSE (Q8K1R7) Serine/threonine-protein kinase Nek9 (EC 2.7.11.1)|
           (NimA-related protein kinase 9) (Never in mitosis
           A-related kinase 9)
          Length = 984

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 19/53 (35%), Positives = 24/53 (45%)
 Frame = -3

Query: 231 DSKPGPSSKIGPLPPRAATGKAEENEKVVAPLMFLRNGHLSTPGWPEKFSDDA 73
           DS PGPS+  GP   RA  G AE+ E    P+  L  G         +  DD+
Sbjct: 27  DSGPGPSAVPGP---RAGGGAAEQEELHYIPIRVLGRGAFGEATLYRRTEDDS 76



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>CO9A1_CHICK (P12106) Collagen alpha-1(IX) chain precursor|
          Length = 920

 Score = 29.6 bits (65), Expect = 7.9
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = +2

Query: 185 RGGKGPIFEDGPGFESAFKLFHGQDGIVPLSGRSYVPDENGSES----TDVKPEPALPFN 352
           +G +GP+ E+GP  E   +   G +G+    G S +P  +G E        K EP  P  
Sbjct: 502 QGQRGPVGEEGPKGERGPQGTRGINGLPGPKGESGLPGVDGREGIPGMPGAKGEPGKPGT 561

Query: 353 P 355
           P
Sbjct: 562 P 562


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99,716,820
Number of Sequences: 219361
Number of extensions: 2126577
Number of successful extensions: 7321
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 6572
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7302
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5995743495
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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