Clone Name | basd2c24 |
---|---|
Clone Library Name | barley_pub |
>RBP1B_ARATH (Q8RWG8) Ran-binding protein 1 homolog b| Length = 217 Score = 236 bits (603), Expect = 3e-62 Identities = 116/158 (73%), Positives = 134/158 (84%) Frame = +3 Query: 186 TGAQVAPIVRLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKENG 365 TGAQVAPIVRLEEVAVTTGEEDED++LD+K+KLYRFDKDG+QWKERG GTVK LKH+ +G Sbjct: 26 TGAQVAPIVRLEEVAVTTGEEDEDTILDLKSKLYRFDKDGSQWKERGAGTVKFLKHRVSG 85 Query: 366 KVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTV 545 K+RLVMRQ+KTLKICANHLV S +QEHAG+DKSCVWHA DF+DGELKDE+F IRF +V Sbjct: 86 KIRLVMRQSKTLKICANHLVGSGMSVQEHAGNDKSCVWHARDFSDGELKDELFCIRFASV 145 Query: 546 ENCKKFKDLVDEIAESLAKDEDGESVEGSSAAGLLEKL 659 ENCK F E+AES ++E ES + S AGLLEKL Sbjct: 146 ENCKAFMQKFKEVAES--EEEKEESKDASDTAGLLEKL 181
>RBP1C_ARATH (P92985) Ran-binding protein 1 homolog c| Length = 219 Score = 236 bits (601), Expect = 6e-62 Identities = 113/158 (71%), Positives = 134/158 (84%) Frame = +3 Query: 186 TGAQVAPIVRLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKENG 365 TGAQVAPIVRLEEVAVTTGEEDED++LD+K+K+YRFDK+GNQWKERG GTVKLLKHKE G Sbjct: 23 TGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKMYRFDKEGNQWKERGAGTVKLLKHKETG 82 Query: 366 KVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTV 545 KVRLVMRQ+KTLKICANHL+ S +QEH+G++KSC+WHA DF+DGELKDE+F IRF ++ Sbjct: 83 KVRLVMRQSKTLKICANHLISSGMSVQEHSGNEKSCLWHATDFSDGELKDELFCIRFASI 142 Query: 546 ENCKKFKDLVDEIAESLAKDEDGESVEGSSAAGLLEKL 659 ENCK F + EIAES + ES +G AAGL+E L Sbjct: 143 ENCKTFMEKFTEIAES--QQVGKESTQGDEAAGLIENL 178
>RBP1A_ARATH (Q9LMK7) Ran-binding protein 1 homolog a (Ran-binding protein| siRanBP) Length = 228 Score = 233 bits (593), Expect = 5e-61 Identities = 113/158 (71%), Positives = 130/158 (82%) Frame = +3 Query: 186 TGAQVAPIVRLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKENG 365 TGAQVAPIVRLEEVAVTTGEEDED++LD+K+KLYRFDKD NQWKERG GTVK LKHK G Sbjct: 24 TGAQVAPIVRLEEVAVTTGEEDEDAVLDLKSKLYRFDKDANQWKERGAGTVKFLKHKNTG 83 Query: 366 KVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTV 545 K+RLVMRQ+KTLKICANH V S +QEH G++KSCVWHA DFADGELKDE+F IRF ++ Sbjct: 84 KIRLVMRQSKTLKICANHFVKSGMSVQEHVGNEKSCVWHARDFADGELKDELFCIRFASI 143 Query: 546 ENCKKFKDLVDEIAESLAKDEDGESVEGSSAAGLLEKL 659 ENCK F E+AES ++E ES + + AGLLEKL Sbjct: 144 ENCKTFMQKFKEVAES--EEEKEESKDAADTAGLLEKL 179
>RANG_SCHPO (Q09717) Ran-specific GTPase-activating protein 1 (Ran-binding| protein 1) (RANBP1) (Spi1-binding protein) Length = 215 Score = 138 bits (348), Expect = 1e-32 Identities = 71/134 (52%), Positives = 90/134 (67%), Gaps = 1/134 (0%) Frame = +3 Query: 204 PIVRLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKENGKVRLVM 383 PIV+L V T EE+E M+AKL+RFDK ++WKERGTG +LLKHKE GK RLVM Sbjct: 77 PIVKLSAVETKTNEEEETVEFKMRAKLFRFDKAASEWKERGTGDARLLKHKETGKTRLVM 136 Query: 384 RQAKTLKICANHLVISTTKMQEHAGSDKSCVWH-AADFADGELKDEMFAIRFGTVENCKK 560 R+ KTLK+CANHL++ K+ + GSD+S VW AAD ++GE E FAIRF EN Sbjct: 137 RRDKTLKVCANHLLMPEMKLTPNVGSDRSWVWTVAADVSEGEPTAETFAIRFANSENANL 196 Query: 561 FKDLVDEIAESLAK 602 FK+ ++ E AK Sbjct: 197 FKENFEKYQEENAK 210
>RANG_MOUSE (P34022) Ran-specific GTPase-activating protein (Ran-binding| protein 1) (RANBP1) (HpaII tiny fragments locus 9a protein) Length = 203 Score = 138 bits (348), Expect = 1e-32 Identities = 76/158 (48%), Positives = 102/158 (64%), Gaps = 3/158 (1%) Frame = +3 Query: 195 QVAPIVRLEEVAVTTGEEDEDSLLDMKAKLYRF--DKDGNQWKERGTGTVKLLKHKENGK 368 Q PIV L E + T EEDE+ L M+AKL+RF + D +WKERGTG VKLLKHKE G Sbjct: 26 QFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGT 85 Query: 369 VRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHA-ADFADGELKDEMFAIRFGTV 545 +RL+MR+ KTLKICANH + +++ +AGSD++ VW+ ADFAD K E+ AIRF Sbjct: 86 IRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNA 145 Query: 546 ENCKKFKDLVDEIAESLAKDEDGESVEGSSAAGLLEKL 659 EN +KFK +E + + + E + +A + EKL Sbjct: 146 ENAQKFKTKFEECRKEIEEREKKGPGKNDNAEKVAEKL 183
>RANG_HUMAN (P43487) Ran-specific GTPase-activating protein (Ran-binding| protein 1) (RanBP1) Length = 201 Score = 136 bits (343), Expect = 5e-32 Identities = 77/158 (48%), Positives = 101/158 (63%), Gaps = 3/158 (1%) Frame = +3 Query: 195 QVAPIVRLEEVAVTTGEEDEDSLLDMKAKLYRF--DKDGNQWKERGTGTVKLLKHKENGK 368 Q PIV L E + T EEDE+ L M+AKL+RF + D +WKERGTG VKLLKHKE G Sbjct: 26 QFEPIVSLPEQEIKTLEEDEEELFKMRAKLFRFASENDLPEWKERGTGDVKLLKHKEKGA 85 Query: 369 VRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHA-ADFADGELKDEMFAIRFGTV 545 +RL+MR+ KTLKICANH + +++ +AGSD++ VW+ ADFAD K E+ AIRF Sbjct: 86 IRLLMRRDKTLKICANHYITPMMELKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNA 145 Query: 546 ENCKKFKDLVDEIAESLAKDEDGESVEGSSAAGLLEKL 659 EN +KFK +E + + E+ E GS EK+ Sbjct: 146 ENAQKFKTKFEECRKEI---EEREKKAGSGKNDHAEKV 180
>RBP2_HUMAN (P49792) Ran-binding protein 2 (RanBP2) (Nuclear pore complex protein| Nup358) (Nucleoporin Nup358) (358 kDa nucleoporin) (P270) Length = 3224 Score = 133 bits (334), Expect = 5e-31 Identities = 68/139 (48%), Positives = 92/139 (66%), Gaps = 1/139 (0%) Frame = +3 Query: 189 GAQVAPIVRL-EEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKENG 365 G P+V L +++ V TGEEDE+ +AKL+RFD + +WKERG G VK+L+HK +G Sbjct: 1169 GPHFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDVESKEWKERGIGNVKILRHKTSG 1228 Query: 366 KVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTV 545 K+RL+MR+ + LKICANH + K+ +AGSD+S VWHA D+AD K E AIRF T Sbjct: 1229 KIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTP 1288 Query: 546 ENCKKFKDLVDEIAESLAK 602 E FK +E A+S+ K Sbjct: 1289 EEAALFKCKFEE-AQSILK 1306 Score = 124 bits (311), Expect = 2e-28 Identities = 57/127 (44%), Positives = 91/127 (71%), Gaps = 1/127 (0%) Frame = +3 Query: 204 PIVRL-EEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKENGKVRLV 380 P+V++ E+V + TGEEDE L + KL+RFD + +QWKERG G +K+LK++ NGK+R++ Sbjct: 2015 PVVQMPEKVELVTGEEDEKVLYSQRVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRML 2074 Query: 381 MRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKK 560 MR+ + LK+CANH + +T ++ +GSD++ +W A+DF+DG+ K E A +F T E ++ Sbjct: 2075 MRREQVLKVCANHWITTTMNLKPLSGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEE 2134 Query: 561 FKDLVDE 581 FK +E Sbjct: 2135 FKQKFEE 2141 Score = 124 bits (310), Expect = 3e-28 Identities = 61/137 (44%), Positives = 88/137 (64%) Frame = +3 Query: 204 PIVRLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKENGKVRLVM 383 PIV L EV V +GEEDE+ L +AKLYR+D+D +QWKERG G +K+L H R++M Sbjct: 2914 PIVSLPEVEVKSGEEDEEILFKERAKLYRWDRDVSQWKERGVGDIKILWHTMKNYYRILM 2973 Query: 384 RQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKKF 563 R+ + K+CANH++ T +++ S+ + VW A+D+ADGE K E A+RF T E F Sbjct: 2974 RRDQVFKVCANHVITKTMELKPLNVSNNALVWTASDYADGEAKVEQLAVRFKTKEVADCF 3033 Query: 564 KDLVDEIAESLAKDEDG 614 K +E ++L K + G Sbjct: 3034 KKTFEECQQNLMKLQKG 3050 Score = 120 bits (300), Expect = 5e-27 Identities = 60/140 (42%), Positives = 88/140 (62%), Gaps = 1/140 (0%) Frame = +3 Query: 189 GAQVAPIVRLEE-VAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKENG 365 G P+V L + V V++GEE+E + +AKLYR+DKD QWKERG G +K+L++ +N Sbjct: 2307 GQYFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYDKDVGQWKERGIGDIKILQNYDNK 2366 Query: 366 KVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTV 545 +VR+VMR+ + LK+CANH + +Q G+++ +W A DFADGE K E A+RF Sbjct: 2367 QVRIVMRRDQVLKLCANHRITPDMTLQNMKGTERVWLWTACDFADGERKVEHLAVRFKLQ 2426 Query: 546 ENCKKFKDLVDEIAESLAKD 605 + FK + DE + KD Sbjct: 2427 DVADSFKKIFDEAKTAQEKD 2446
>RBP2_MOUSE (Q9ERU9) Ran-binding protein 2 (RanBP2)| Length = 3053 Score = 132 bits (331), Expect = 1e-30 Identities = 67/139 (48%), Positives = 92/139 (66%), Gaps = 1/139 (0%) Frame = +3 Query: 189 GAQVAPIVRL-EEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKENG 365 G P+V L +++ V TGEEDE+ +AKL+RFD + +WKERG G VK+L+HK +G Sbjct: 1163 GPHFEPVVPLPDKIEVKTGEEDEEEFFCNRAKLFRFDGESKEWKERGIGNVKILRHKTSG 1222 Query: 366 KVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTV 545 K+RL+MR+ + LKICANH + K+ +AGSD+S VWHA D+AD K E AIRF T Sbjct: 1223 KIRLLMRREQVLKICANHYISPDMKLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTP 1282 Query: 546 ENCKKFKDLVDEIAESLAK 602 E FK +E A+++ K Sbjct: 1283 EEAALFKCKFEE-AQNILK 1300 Score = 124 bits (310), Expect = 3e-28 Identities = 57/127 (44%), Positives = 91/127 (71%), Gaps = 1/127 (0%) Frame = +3 Query: 204 PIVRL-EEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKENGKVRLV 380 P+V++ E+V + TGEEDE L + KL+RFD + +QWKERG G +K+LK++ NGK+R++ Sbjct: 1852 PVVQMPEKVELVTGEEDEKVLYSQRVKLFRFDAEISQWKERGLGNLKILKNEVNGKLRML 1911 Query: 381 MRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKK 560 MR+ + LK+CANH + +T ++ +GSD++ +W A+DF+DG+ K E A +F T E ++ Sbjct: 1912 MRREQVLKVCANHWITTTMNLKPLSGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEE 1971 Query: 561 FKDLVDE 581 FK +E Sbjct: 1972 FKQKFEE 1978 Score = 121 bits (303), Expect = 2e-27 Identities = 58/139 (41%), Positives = 90/139 (64%) Frame = +3 Query: 204 PIVRLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKENGKVRLVM 383 PIV L EV V +GEEDE+ L +AKLYR+D+D +QWKERG G +K+L H R++M Sbjct: 2743 PIVSLPEVEVKSGEEDEEVLFKERAKLYRWDRDVSQWKERGIGDIKILWHTMKKYYRILM 2802 Query: 384 RQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKKF 563 R+ + K+CANH++ +++ S+ + VW A+D+ADGE K E A+RF T E + F Sbjct: 2803 RRDQVFKVCANHVITKAMELKPLNVSNNALVWTASDYADGEAKVEQLAVRFKTKEMTESF 2862 Query: 564 KDLVDEIAESLAKDEDGES 620 K ++ +++ K ++G + Sbjct: 2863 KKKFEDSQQNIIKLQNGHT 2881 Score = 120 bits (302), Expect = 3e-27 Identities = 61/140 (43%), Positives = 88/140 (62%), Gaps = 1/140 (0%) Frame = +3 Query: 189 GAQVAPIVRLEE-VAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKENG 365 G P+V L + V V++GEE+E + +AKLYR+DKD QWKERG G +K+L++ +N Sbjct: 2144 GQYFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYDKDVGQWKERGIGDIKILQNYDNK 2203 Query: 366 KVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTV 545 +VR+VMR+ + LK+CANH + +Q G+++ VW A DFADGE K E A+RF Sbjct: 2204 QVRIVMRRDQVLKLCANHRITPDMTLQTMKGTERVWVWTACDFADGERKIEHLAVRFKLQ 2263 Query: 546 ENCKKFKDLVDEIAESLAKD 605 + FK + DE + KD Sbjct: 2264 DVADSFKKIFDEAKTAQEKD 2283
>YRB1_YEAST (P41920) Ran-specific GTPase-activating protein 1 (Ran-binding| protein 1) (RANBP1) (Perinuclear array-localized protein) Length = 201 Score = 131 bits (330), Expect = 2e-30 Identities = 66/130 (50%), Positives = 91/130 (70%), Gaps = 1/130 (0%) Frame = +3 Query: 204 PIVRLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKENGKVRLVM 383 P+V LE+V V T EEDE+ L ++AKL+RFD D +WKERGTG K LK+K+ KVR++M Sbjct: 67 PVVHLEKVDVKTMEEDEEVLYKVRAKLFRFDADAKEWKERGTGDCKFLKNKKTNKVRILM 126 Query: 384 RQAKTLKICANHLVISTTKMQEHAGSDKSCVWH-AADFADGELKDEMFAIRFGTVENCKK 560 R+ KTLKICANH++ ++ + GSD+S V+ AD A+GE + FAIRFG+ EN K Sbjct: 127 RRDKTLKICANHIIAPEYTLKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADK 186 Query: 561 FKDLVDEIAE 590 FK+ ++ E Sbjct: 187 FKEEFEKAQE 196
>RBP2_BOVIN (P48820) Ran-binding protein 2 (RanBP2) (Nuclear pore complex protein| Nup358) (Nucleoporin Nup358) (358 kDa nucleoporin) (P270) (Fragment) Length = 1085 Score = 124 bits (311), Expect = 2e-28 Identities = 59/138 (42%), Positives = 89/138 (64%) Frame = +3 Query: 204 PIVRLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKENGKVRLVM 383 PIV L EV V +GEEDE+ L +AKLYR+D++ +QWK+RG G +K+L H R++M Sbjct: 775 PIVSLPEVEVKSGEEDEEILFKERAKLYRWDREASQWKDRGVGDIKILWHTVKNYFRILM 834 Query: 384 RQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKKF 563 R+ + K+CANH++ T +++ S+ + VW A+D+ADGE K E A+RF T E F Sbjct: 835 RRDQVFKVCANHVITKTMELKPLNVSNNALVWTASDYADGEAKVEQLAVRFKTKEMADCF 894 Query: 564 KDLVDEIAESLAKDEDGE 617 K +E ++L K + G+ Sbjct: 895 KKKFEECQQNLLKPQKGQ 912 Score = 123 bits (309), Expect = 4e-28 Identities = 62/140 (44%), Positives = 88/140 (62%), Gaps = 1/140 (0%) Frame = +3 Query: 189 GAQVAPIVRLEE-VAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKENG 365 G P+V L + V V++GEE+E + +AKLYR+DKD QWKERG G +K+L++ EN Sbjct: 172 GQHFEPVVPLPDLVEVSSGEENEQVVFSHRAKLYRYDKDAGQWKERGIGDIKILQNYENK 231 Query: 366 KVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTV 545 +VR+VMR+ + LK+CANH + +Q G+++ VW A DFADGE K E A+RF Sbjct: 232 QVRIVMRRDQVLKLCANHRITPDMTLQNMKGTERVWVWTACDFADGERKIEHLAVRFKLQ 291 Query: 546 ENCKKFKDLVDEIAESLAKD 605 + FK + DE + KD Sbjct: 292 DVADSFKKIFDEAKVAQEKD 311
>RBP26_HUMAN (Q68DN6) Ran-binding protein 2-like 6 (RanBP2L6)| Length = 1748 Score = 120 bits (300), Expect = 5e-27 Identities = 60/140 (42%), Positives = 88/140 (62%), Gaps = 1/140 (0%) Frame = +3 Query: 189 GAQVAPIVRLEE-VAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKENG 365 G P+V L + V V++GEE+E + +A+LYR+DKD QWKERG G +K+L++ +N Sbjct: 1316 GQYFEPVVPLPDLVEVSSGEENEQVVFSHRAELYRYDKDVGQWKERGIGDIKILQNYDNK 1375 Query: 366 KVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTV 545 +VR+VMR+ + LK+CANH + +Q G+++ VW A DFADGE K E A+RF Sbjct: 1376 QVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWTACDFADGERKVEHLAVRFKLQ 1435 Query: 546 ENCKKFKDLVDEIAESLAKD 605 + FK + DE + KD Sbjct: 1436 DVADSFKKIFDEAKTAQEKD 1455 Score = 117 bits (293), Expect = 3e-26 Identities = 56/127 (44%), Positives = 88/127 (69%), Gaps = 1/127 (0%) Frame = +3 Query: 204 PIVRL-EEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKENGKVRLV 380 P+V++ E+V + TGEE E L KL+RFD + +QWKERG G +K+LK++ NGK R++ Sbjct: 1024 PVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAEISQWKERGLGNLKILKNEVNGKPRML 1083 Query: 381 MRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKK 560 MR+ + LK+CANH + +T ++ +GSD++ +W A+DF+DG+ K E A +F T E ++ Sbjct: 1084 MRRDQVLKVCANHWITTTMNLKPLSGSDRAWMWLASDFSDGDAKLERLAAQFKTPELAEE 1143 Query: 561 FKDLVDE 581 FK +E Sbjct: 1144 FKQKFEE 1150
>RBP22_HUMAN (Q53T03) Ran-binding protein 2-like 2 (RanBP2L2)| Length = 1765 Score = 120 bits (300), Expect = 5e-27 Identities = 56/127 (44%), Positives = 88/127 (69%), Gaps = 1/127 (0%) Frame = +3 Query: 204 PIVRL-EEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKENGKVRLV 380 P+V++ E+V + TGEE E L KL+RFD + QWKERG G +K+LK++ NGK+R++ Sbjct: 1039 PVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAEVRQWKERGLGNLKILKNEVNGKLRML 1098 Query: 381 MRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKK 560 MR+ + LK+CANH + +T ++ +GSD++ +W A+DF+DG+ K E A +F T E ++ Sbjct: 1099 MRREQVLKVCANHWITTTMNLKPLSGSDRAWMWSASDFSDGDAKLERLAAKFKTPELAEE 1158 Query: 561 FKDLVDE 581 FK +E Sbjct: 1159 FKQKFEE 1165 Score = 119 bits (298), Expect = 8e-27 Identities = 59/140 (42%), Positives = 88/140 (62%), Gaps = 1/140 (0%) Frame = +3 Query: 189 GAQVAPIVRLEE-VAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKENG 365 G P+V L + V V++GEE+E + +A++YR+DKD QWKERG G +K+L++ +N Sbjct: 1331 GQYFEPVVPLPDLVEVSSGEENEQVVFSHRAEIYRYDKDVGQWKERGIGDIKILQNYDNK 1390 Query: 366 KVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTV 545 +VR+VMR+ + LK+CANH + +Q G+++ VW A DFADGE K E A+RF Sbjct: 1391 QVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWTACDFADGERKVEHLAVRFKLQ 1450 Query: 546 ENCKKFKDLVDEIAESLAKD 605 + FK + DE + KD Sbjct: 1451 DVADSFKKIFDEAKTAQEKD 1470
>RBP23_HUMAN (O14715) Ran-binding protein 2-like 3 (RanBP2L3) (Fragment)| Length = 755 Score = 120 bits (300), Expect = 5e-27 Identities = 56/127 (44%), Positives = 88/127 (69%), Gaps = 1/127 (0%) Frame = +3 Query: 204 PIVRL-EEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKENGKVRLV 380 P+V++ E+V + TGEE E L KL+RFD + QWKERG G +K+LK++ NGK+R++ Sbjct: 29 PVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAEVRQWKERGLGNLKILKNEVNGKLRML 88 Query: 381 MRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKK 560 MR+ + LK+CANH + +T ++ +GSD++ +W A+DF+DG+ K E A +F T E ++ Sbjct: 89 MRREQVLKVCANHWITTTMNLKPLSGSDRAWMWSASDFSDGDAKLERLAAKFKTPELAEE 148 Query: 561 FKDLVDE 581 FK +E Sbjct: 149 FKQKFEE 155 Score = 119 bits (298), Expect = 8e-27 Identities = 59/140 (42%), Positives = 88/140 (62%), Gaps = 1/140 (0%) Frame = +3 Query: 189 GAQVAPIVRLEE-VAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKENG 365 G P+V L + V V++GEE+E + +A++YR+DKD QWKERG G +K+L++ +N Sbjct: 321 GQYFEPVVPLPDLVEVSSGEENEQVVFSHRAEIYRYDKDVGQWKERGIGDIKILQNYDNK 380 Query: 366 KVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTV 545 +VR+VMR+ + LK+CANH + +Q G+++ VW A DFADGE K E A+RF Sbjct: 381 QVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWTACDFADGERKVEHLAVRFKLQ 440 Query: 546 ENCKKFKDLVDEIAESLAKD 605 + FK + DE + KD Sbjct: 441 DVADSFKKIFDEAKTAQEKD 460
>RGPD8_HUMAN (Q99666) RANBP2-like and GRIP domain-containing protein 8| (Ran-binding protein 2-like 1) (RanBP2L1) (Sperm membrane protein BS-63) Length = 1765 Score = 119 bits (298), Expect = 8e-27 Identities = 59/140 (42%), Positives = 88/140 (62%), Gaps = 1/140 (0%) Frame = +3 Query: 189 GAQVAPIVRLEE-VAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKENG 365 G P+V L + V V++GEE+E + +A++YR+DKD QWKERG G +K+L++ +N Sbjct: 1331 GQYFEPVVPLPDLVEVSSGEENEQVVFSHRAEIYRYDKDVGQWKERGIGDIKILQNYDNK 1390 Query: 366 KVRLVMRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTV 545 +VR+VMR+ + LK+CANH + +Q G+++ VW A DFADGE K E A+RF Sbjct: 1391 QVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWTACDFADGERKVEHLAVRFKLQ 1450 Query: 546 ENCKKFKDLVDEIAESLAKD 605 + FK + DE + KD Sbjct: 1451 DVADSFKKIFDEAKTAQEKD 1470 Score = 117 bits (294), Expect = 2e-26 Identities = 55/127 (43%), Positives = 88/127 (69%), Gaps = 1/127 (0%) Frame = +3 Query: 204 PIVRL-EEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKENGKVRLV 380 P+V++ E+V + TGEE E L KL+RFD + +QWKERG G +K+LK++ NGK+R++ Sbjct: 1039 PVVQMPEKVELVTGEEGEKVLYSQGVKLFRFDAEVSQWKERGLGNLKILKNEVNGKLRML 1098 Query: 381 MRQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKK 560 MR+ + LK+CANH + +T ++ +GSD++ +W A+ F+DG+ K E A +F T E ++ Sbjct: 1099 MRREQVLKVCANHWITTTMNLKPLSGSDRAWMWSASHFSDGDAKLERLAAKFKTPELAEE 1158 Query: 561 FKDLVDE 581 FK +E Sbjct: 1159 FKQKFEE 1165
>YRB2_YEAST (P40517) Ran-specific GTPase-activating protein 2 (Ran-binding| protein 2) (RANBP2) Length = 327 Score = 57.0 bits (136), Expect = 5e-08 Identities = 38/124 (30%), Positives = 62/124 (50%), Gaps = 2/124 (1%) Frame = +3 Query: 210 VRLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKEN-GKVRLVMR 386 ++L++ V +GEE E+ + + AKLY+ WKERG G +K+ K K++ K R+VMR Sbjct: 198 LKLQKQEVKSGEESEECIYQVNAKLYQLSNIKEGWKERGVGIIKINKSKDDVEKTRIVMR 257 Query: 387 QAKTLKICAN-HLVISTTKMQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKKF 563 LK+ N LV T + GS +S + D +AI+ G E + Sbjct: 258 SRGILKVILNIQLVKGFTVQKGFTGSLQSEKFIRLLAVDDNGDPAQYAIKTGKKETTDEL 317 Query: 564 KDLV 575 +++ Sbjct: 318 YNII 321
>RANB3_MACFA (Q4R4T9) Ran-binding protein 3 (RanBP3)| Length = 499 Score = 56.6 bits (135), Expect = 6e-08 Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 4/103 (3%) Frame = +3 Query: 216 LEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKL--LKHKENGKV--RLVM 383 LE+V V TGEE E ++L M+ KL+ FDK W ERG G ++L + ++G + RLVM Sbjct: 318 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVM 377 Query: 384 RQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELK 512 R +L++ N + +MQ S+KS A D D +K Sbjct: 378 RTQGSLRLILNTKL--WAQMQIDKASEKSIRITAMDTEDQGVK 418
>RANB3_HUMAN (Q9H6Z4) Ran-binding protein 3 (RanBP3)| Length = 567 Score = 56.6 bits (135), Expect = 6e-08 Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 4/103 (3%) Frame = +3 Query: 216 LEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKL--LKHKENGKV--RLVM 383 LE+V V TGEE E ++L M+ KL+ FDK W ERG G ++L + ++G + RLVM Sbjct: 386 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVM 445 Query: 384 RQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELK 512 R +L++ N + +MQ S+KS A D D +K Sbjct: 446 RTQGSLRLILNTKL--WAQMQIDKASEKSIRITAMDTEDQGVK 486
>RANB3_PONPY (Q5R4Y2) Ran-binding protein 3 (RanBP3)| Length = 494 Score = 56.6 bits (135), Expect = 6e-08 Identities = 39/103 (37%), Positives = 57/103 (55%), Gaps = 4/103 (3%) Frame = +3 Query: 216 LEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKL--LKHKENGKV--RLVM 383 LE+V V TGEE E ++L M+ KL+ FDK W ERG G ++L + ++G + RLVM Sbjct: 313 LEKVEVITGEEAESNVLQMQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVM 372 Query: 384 RQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELK 512 R +L++ N + +MQ S+KS A D D +K Sbjct: 373 RTQGSLRLILNTKL--WAQMQIDKASEKSIRITAMDTEDQVVK 413
>RANB3_MOUSE (Q9CT10) Ran-binding protein 3 (RanBP3)| Length = 491 Score = 55.8 bits (133), Expect = 1e-07 Identities = 38/103 (36%), Positives = 57/103 (55%), Gaps = 4/103 (3%) Frame = +3 Query: 216 LEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKL--LKHKENGKV--RLVM 383 LE+V V TGEE E ++L ++ KL+ FDK W ERG G ++L + ++G + RLVM Sbjct: 310 LEKVEVITGEEAESNVLQIQCKLFVFDKTSQSWVERGRGLLRLNDMASTDDGTLQSRLVM 369 Query: 384 RQAKTLKICANHLVISTTKMQEHAGSDKSCVWHAADFADGELK 512 R +L++ N + +MQ S+KS A D D +K Sbjct: 370 RTQGSLRLILNTKL--WAQMQMDKASEKSIRITATDAEDQGVK 410
>NUP2_YEAST (P32499) Nucleoporin NUP2 (Nuclear pore protein NUP2) (p95)| Length = 720 Score = 55.1 bits (131), Expect = 2e-07 Identities = 35/125 (28%), Positives = 62/125 (49%), Gaps = 1/125 (0%) Frame = +3 Query: 225 VAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKEN-GKVRLVMRQAKTL 401 + + GEEDE +L KAKL F+ + + RG G +KLLK K++ KVRL+ R Sbjct: 597 INLQNGEEDEVALFSQKAKLMTFNAETKSYDSRGVGEMKLLKKKDDPSKVRLLCRSDGMG 656 Query: 402 KICANHLVISTTKMQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKKFKDLVDE 581 + N V+ + K + A + + + ADG+L + ++F E + F +++ Sbjct: 657 NVLLNATVVDSFKYEPLAPGNDNLIKAPTVAADGKL--VTYIVKFKQKEEGRSFTKAIED 714 Query: 582 IAESL 596 + + Sbjct: 715 AKKEM 719
>HBA1_SCHPO (Q09146) Brefeldin A resistance protein (Caffeine resistance| protein 1) Length = 399 Score = 48.1 bits (113), Expect = 2e-05 Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 2/70 (2%) Frame = +3 Query: 213 RLEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVK--LLKHKENGKVRLVMR 386 +L + + TGEE+E+S+ ++A+LY + WKERG G +K + K + +G RL+MR Sbjct: 262 QLSDSEIITGEEEEESIFSVRARLYVVADEKKTWKERGQGILKVNVPKQRGSGSGRLLMR 321 Query: 387 QAKTLKICAN 416 ++ N Sbjct: 322 NDAVHRVIMN 331
>NGK7_SCHPO (Q9USL4) Putative nucleoporin C18B5.07c| Length = 565 Score = 47.4 bits (111), Expect = 4e-05 Identities = 34/124 (27%), Positives = 63/124 (50%) Frame = +3 Query: 240 GEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKENGKVRLVMRQAKTLKICANH 419 GEE+EDS+ + +AK+YRFD + + G G +K+ ++ G R++ R + K+ N Sbjct: 448 GEENEDSVFETRAKIYRFDATSKSYSDIGIGPLKINVDRDTGSARILARVEGSGKLLLN- 506 Query: 420 LVISTTKMQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLA 599 + + E++ + K V A DG+ EM+ IR +K ++E + ++ Sbjct: 507 --VRLCQDFEYSLAGKKDVKVPAASTDGK-SIEMYLIRVKEPSTAEKLLAELNE--KKVS 561 Query: 600 KDED 611 K E+ Sbjct: 562 KSEN 565
>NUP50_HUMAN (Q9UKX7) Nucleoporin 50 kDa (Nuclear pore-associated protein 60| kDa-like) Length = 468 Score = 33.9 bits (76), Expect = 0.44 Identities = 21/52 (40%), Positives = 31/52 (59%) Frame = +3 Query: 231 VTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKENGKVRLVMR 386 V T ++ED+ K KL F K N++KE+G GT+ LK N K +L++R Sbjct: 348 VVTEVKEEDAFYSKKCKL--FYKKDNEFKEKGIGTLH-LKPTANQKTQLLVR 396
>NUP50_RAT (O08587) Nucleoporin 50 kDa (Nuclear pore-associated protein 60| kDa-like) Length = 467 Score = 32.0 bits (71), Expect = 1.7 Identities = 20/52 (38%), Positives = 30/52 (57%) Frame = +3 Query: 231 VTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKENGKVRLVMR 386 V T ++ED+ K KL F K N++KE+G GT+ LK K +L++R Sbjct: 347 VVTEVKEEDAFYSKKCKL--FYKKDNEFKEKGVGTLH-LKPTATQKTQLLVR 395
>NUP50_MOUSE (Q9JIH2) Nucleoporin 50 kDa (Nuclear pore-associated protein 60| kDa-like) Length = 466 Score = 32.0 bits (71), Expect = 1.7 Identities = 20/52 (38%), Positives = 30/52 (57%) Frame = +3 Query: 231 VTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKENGKVRLVMR 386 V T ++ED+ K KL F K N++KE+G GT+ LK K +L++R Sbjct: 346 VVTEVKEEDAFYSKKCKL--FYKKDNEFKEKGVGTLH-LKPTATQKTQLLVR 394
>SMC2_YEAST (P38989) Structural maintenance of chromosome 2 (DA-box protein| SMC2) Length = 1170 Score = 30.0 bits (66), Expect = 6.4 Identities = 37/147 (25%), Positives = 61/147 (41%), Gaps = 4/147 (2%) Frame = +3 Query: 216 LEEVAVTTGEEDEDSLLDMKAKLYRFDKDGNQWKERGTGTVKLLKHKENGKVRLVMRQAK 395 L E T EE + L+ + + K+ KE GT+ L++KENG + + R Sbjct: 263 LNEFVKKTSEEIDS--LNEDVEEIKLQKEKELHKE---GTISKLENKENGLLNEISRLKT 317 Query: 396 TLKICANHLVISTTKMQ----EHAGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKKF 563 +L I +L +T K + E A S + + +A+ E +M E K Sbjct: 318 SLSIKVENLNDTTEKSKALESEIASSSAKLIEKKSAYANTEKDYKM------VQEQLSKQ 371 Query: 564 KDLVDEIAESLAKDEDGESVEGSSAAG 644 +DL E ++ G S G++ G Sbjct: 372 RDLYKRKEELVSTLTTGISSTGAADGG 398
>DXS_CHLCV (Q823V1) 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7)| (1-deoxyxylulose-5-phosphate synthase) (DXP synthase) (DXPS) Length = 644 Score = 29.6 bits (65), Expect = 8.3 Identities = 16/41 (39%), Positives = 24/41 (58%) Frame = -2 Query: 442 IFVVEITKWLAQILSVLAWRITRRTLPFSLCLSSLTVPVPL 320 +F +I KWL +I I+RR+ S+CL SL P+P+ Sbjct: 204 LFSRKIEKWLTKIPRY-GNSISRRSHKLSICLKSLFCPIPI 243 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 60,426,457 Number of Sequences: 219361 Number of extensions: 1030306 Number of successful extensions: 3665 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 3563 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3657 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6314008338 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)