>gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone
              OSJNBa0072P02, complete sequence
          Length = 157488

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 3      ggggaggcgcggctggcggcg 23
              |||||||||||||||||||||
Sbjct: 130464 ggggaggcgcggctggcggcg 130444

>ref|XM_467635.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 909

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 8  ggcgcggctggcggcgacggt 28
          |||||||||||||||||||||
Sbjct: 67 ggcgcggctggcggcgacggt 87

>gb|AC137595.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone
            OSJNBa0094K23, complete sequence
          Length = 167482

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 3    ggggaggcgcggctggcggcg 23
            |||||||||||||||||||||
Sbjct: 6574 ggggaggcgcggctggcggcg 6554

>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 140    gtcgctggcggcgaagagccg 160
              |||||||||||||||||||||
Sbjct: 189825 gtcgctggcggcgaagagccg 189805

>emb|AL139010.29| Human DNA sequence from clone RP11-444M10 on chromosome 1 Contains the 3'
              end of a novel gene, a novel gene and the KIRREL gene for
              kin of IRRE like (Drosophila), complete sequence
          Length = 189477

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 91     acaactcaggagcagcgatctctcc 115
              ||||||||||||||| |||||||||
Sbjct: 125045 acaactcaggagcagggatctctcc 125021

>emb|AL023806.1|HS466P17 Human DNA sequence from clone RP3-466P17 on chromosome 6q24 Contains
             the 5' end of the EPM2A gene for progressive myoclonus
             type 2 epilepsy (Lafora disease) protein (laforin) and a
             CpG island, complete sequence
          Length = 149963

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 5     ggaggcgcggctggcggcgac 25
             |||||||||||||||||||||
Sbjct: 60169 ggaggcgcggctggcggcgac 60149

>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 140     gtcgctggcggcgaagagccg 160
               |||||||||||||||||||||
Sbjct: 1585333 gtcgctggcggcgaagagccg 1585313

>gb|AE012375.1| Xanthomonas campestris pv. campestris str. ATCC 33913,  section 283
            of 460 of the complete genome
          Length = 11056

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 34   gcggcgctcatcggctggctc 54
            |||||||||||||||||||||
Sbjct: 2376 gcggcgctcatcggctggctc 2396

>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome
          Length = 5148708

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 34      gcggcgctcatcggctggctc 54
               |||||||||||||||||||||
Sbjct: 1792037 gcggcgctcatcggctggctc 1792017

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 3        ggggaggcgcggctggcggcg 23
                |||||||||||||||||||||
Sbjct: 19411238 ggggaggcgcggctggcggcg 19411218

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 8        ggcgcggctggcggcgacggt 28
                |||||||||||||||||||||
Sbjct: 30554754 ggcgcggctggcggcgacggt 30554734

>gb|AF454494.1| Homo sapiens truncated laforin isoform (EPM2A) mRNA, partial cds,
           alternatively spliced
          Length = 849

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 5   ggaggcgcggctggcggcgac 25
           |||||||||||||||||||||
Sbjct: 429 ggaggcgcggctggcggcgac 409

>dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0643A10
          Length = 187931

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 8     ggcgcggctggcggcgacggt 28
             |||||||||||||||||||||
Sbjct: 66762 ggcgcggctggcggcgacggt 66742

>dbj|AK121806.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033097L10, full
           insert sequence
          Length = 2069

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 3   ggggaggcgcggctggcggcg 23
           |||||||||||||||||||||
Sbjct: 388 ggggaggcgcggctggcggcg 408

>dbj|AK111722.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023029C05,
          full insert sequence
          Length = 909

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                               
Query: 8  ggcgcggctggcggcgacggt 28
          |||||||||||||||||||||
Sbjct: 67 ggcgcggctggcggcgacggt 87

>gb|DQ211984.1| Toxoplasma gondii eukaryotic translation initiation factor 3 p42
            subunit gene, complete cds
          Length = 7920

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 8    ggcgcggctggcggcgacgg 27
            ||||||||||||||||||||
Sbjct: 5438 ggcgcggctggcggcgacgg 5457

>gb|AC137993.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0122P24, complete sequence
          Length = 136104

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    ggcggcgacggttgcgggcg 36
             ||||||||||||||||||||
Sbjct: 69186 ggcggcgacggttgcgggcg 69167

>gb|AY597283.1| Pseudomonas viridiflava strain RMX3.1b pathogenicity island
             PAI-Region-2, partial sequence
          Length = 39281

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   tctgcgtctacgaagtgcca 182
             ||||||||||||||||||||
Sbjct: 10382 tctgcgtctacgaagtgcca 10401

>gb|AY597282.1| Pseudomonas viridiflava strain RMX23.1a pathogenicity island
            PAI-Region-2, partial sequence
          Length = 39285

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 163  tctgcgtctacgaagtgcca 182
            ||||||||||||||||||||
Sbjct: 9940 tctgcgtctacgaagtgcca 9959

>gb|AY597281.1| Pseudomonas viridiflava strain ME3.1b pathogenicity island
             PAI-Region-2, partial sequence
          Length = 39776

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 163   tctgcgtctacgaagtgcca 182
             ||||||||||||||||||||
Sbjct: 10444 tctgcgtctacgaagtgcca 10463

>emb|AL138878.10| Human DNA sequence from clone RP11-288G3 on chromosome 6 Contains the
             3' end of the RIOK1 gene for RIO kinase 1 (yeast), a
             hetergeneous riboprotein L (HNRNP L) pseudogene, a
             ribosomal protein S26 pseudogene and a isocitrate
             dehydrogenase 1 (IDH1) pseudogene, complete sequence
          Length = 128320

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 324   gcatgttgttcctttgctca 343
             ||||||||||||||||||||
Sbjct: 87695 gcatgttgttcctttgctca 87714

>gb|CP000133.1| Rhizobium etli CFN 42, complete genome
          Length = 4381608

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 8       ggcgcggctggcggcgacgg 27
               ||||||||||||||||||||
Sbjct: 2796780 ggcgcggctggcggcgacgg 2796799

>gb|AC083751.6| Genomic sequence for Oryza sativa, Nipponbare strain, clone
             OSJNBa0042K08, from chromosome 2, complete sequence
          Length = 164628

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 17    ggcggcgacggttgcgggcg 36
             ||||||||||||||||||||
Sbjct: 37866 ggcggcgacggttgcgggcg 37847

>emb|BX323039.6| Zebrafish DNA sequence from clone CH211-145A11 in linkage group 10,
              complete sequence
          Length = 150772

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 214    agcagggtattttgcagtgt 233
              ||||||||||||||||||||
Sbjct: 113976 agcagggtattttgcagtgt 113995

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
               sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 17      ggcggcgacggttgcgggcg 36
               ||||||||||||||||||||
Sbjct: 7401612 ggcggcgacggttgcgggcg 7401631

>emb|AJ323855.1|HSA323855 Homo sapiens genomic sequence surrounding NotI site, clone NB1-840C
          Length = 1289

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 37   gcgctcatcggctggctctt 56
            ||||||||||||||||||||
Sbjct: 1004 gcgctcatcggctggctctt 1023

>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia
          Length = 1923819

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 8      ggcgcggctggcggcgacgg 27
              ||||||||||||||||||||
Sbjct: 803008 ggcgcggctggcggcgacgg 803027

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 17      ggcggcgacggttgcgggcg 36
               ||||||||||||||||||||
Sbjct: 7471698 ggcggcgacggttgcgggcg 7471717

>emb|AM160766.1| Unidentified microorganism metagenome environmental cosmid clone
           10D10, sub clone 10D10-P2
          Length = 927

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 73  cgccagcgacgtcgcgcgac 92
           ||||||||||||||||||||
Sbjct: 610 cgccagcgacgtcgcgcgac 591

>dbj|AP006686.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT18K09, TM0380,
             complete sequence
          Length = 88931

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 332   ttcctttgctcattttggatggtt 355
             ||||||||||||||||| ||||||
Sbjct: 23605 ttcctttgctcattttgaatggtt 23628

>emb|AL390025.1| Human DNA sequence from clone RP3-336K20 on chromosome 6 Contains a
             pseudogene similar to hetergeneous riboprotein L (HNRNP
             L), to Ribosomal protein S26, a pseudogene similar to
             isocitrate dehydrogenase (NADP+), STSs and GSSs, complete
             sequence
          Length = 52747

 Score = 40.1 bits (20), Expect = 7.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 324   gcatgttgttcctttgctca 343
             ||||||||||||||||||||
Sbjct: 12112 gcatgttgttcctttgctca 12131


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,516,058
Number of Sequences: 3902068
Number of extensions: 3516058
Number of successful extensions: 64328
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63963
Number of HSP's gapped (non-prelim): 365
length of query: 522
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 499
effective length of database: 17,143,297,704
effective search space: 8554505554296
effective search space used: 8554505554296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)