Clone Name | basd2c22 |
---|---|
Clone Library Name | barley_pub |
>gb|AC108759.2| Oryza sativa (Japonica cultiva-group) chromosome 9 BAC clone OSJNBa0072P02, complete sequence Length = 157488 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 ggggaggcgcggctggcggcg 23 ||||||||||||||||||||| Sbjct: 130464 ggggaggcgcggctggcggcg 130444
>ref|XM_467635.1| Oryza sativa (japonica cultivar-group), mRNA Length = 909 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 ggcgcggctggcggcgacggt 28 ||||||||||||||||||||| Sbjct: 67 ggcgcggctggcggcgacggt 87
>gb|AC137595.2| Oryza sativa (japonica cultivar-group) chromosome 9 BAC clone OSJNBa0094K23, complete sequence Length = 167482 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 ggggaggcgcggctggcggcg 23 ||||||||||||||||||||| Sbjct: 6574 ggggaggcgcggctggcggcg 6554
>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence Length = 3181762 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 140 gtcgctggcggcgaagagccg 160 ||||||||||||||||||||| Sbjct: 189825 gtcgctggcggcgaagagccg 189805
>emb|AL139010.29| Human DNA sequence from clone RP11-444M10 on chromosome 1 Contains the 3' end of a novel gene, a novel gene and the KIRREL gene for kin of IRRE like (Drosophila), complete sequence Length = 189477 Score = 42.1 bits (21), Expect = 1.8 Identities = 24/25 (96%) Strand = Plus / Minus Query: 91 acaactcaggagcagcgatctctcc 115 ||||||||||||||| ||||||||| Sbjct: 125045 acaactcaggagcagggatctctcc 125021
>emb|AL023806.1|HS466P17 Human DNA sequence from clone RP3-466P17 on chromosome 6q24 Contains the 5' end of the EPM2A gene for progressive myoclonus type 2 epilepsy (Lafora disease) protein (laforin) and a CpG island, complete sequence Length = 149963 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 ggaggcgcggctggcggcgac 25 ||||||||||||||||||||| Sbjct: 60169 ggaggcgcggctggcggcgac 60149
>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence Length = 3173005 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 140 gtcgctggcggcgaagagccg 160 ||||||||||||||||||||| Sbjct: 1585333 gtcgctggcggcgaagagccg 1585313
>gb|AE012375.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 283 of 460 of the complete genome Length = 11056 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 34 gcggcgctcatcggctggctc 54 ||||||||||||||||||||| Sbjct: 2376 gcggcgctcatcggctggctc 2396
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 34 gcggcgctcatcggctggctc 54 ||||||||||||||||||||| Sbjct: 1792037 gcggcgctcatcggctggctc 1792017
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 ggggaggcgcggctggcggcg 23 ||||||||||||||||||||| Sbjct: 19411238 ggggaggcgcggctggcggcg 19411218
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 ggcgcggctggcggcgacggt 28 ||||||||||||||||||||| Sbjct: 30554754 ggcgcggctggcggcgacggt 30554734
>gb|AF454494.1| Homo sapiens truncated laforin isoform (EPM2A) mRNA, partial cds, alternatively spliced Length = 849 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 5 ggaggcgcggctggcggcgac 25 ||||||||||||||||||||| Sbjct: 429 ggaggcgcggctggcggcgac 409
>dbj|AP005319.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0643A10 Length = 187931 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 8 ggcgcggctggcggcgacggt 28 ||||||||||||||||||||| Sbjct: 66762 ggcgcggctggcggcgacggt 66742
>dbj|AK121806.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033097L10, full insert sequence Length = 2069 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 3 ggggaggcgcggctggcggcg 23 ||||||||||||||||||||| Sbjct: 388 ggggaggcgcggctggcggcg 408
>dbj|AK111722.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023029C05, full insert sequence Length = 909 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 8 ggcgcggctggcggcgacggt 28 ||||||||||||||||||||| Sbjct: 67 ggcgcggctggcggcgacggt 87
>gb|DQ211984.1| Toxoplasma gondii eukaryotic translation initiation factor 3 p42 subunit gene, complete cds Length = 7920 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ggcgcggctggcggcgacgg 27 |||||||||||||||||||| Sbjct: 5438 ggcgcggctggcggcgacgg 5457
>gb|AC137993.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0122P24, complete sequence Length = 136104 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 ggcggcgacggttgcgggcg 36 |||||||||||||||||||| Sbjct: 69186 ggcggcgacggttgcgggcg 69167
>gb|AY597283.1| Pseudomonas viridiflava strain RMX3.1b pathogenicity island PAI-Region-2, partial sequence Length = 39281 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 tctgcgtctacgaagtgcca 182 |||||||||||||||||||| Sbjct: 10382 tctgcgtctacgaagtgcca 10401
>gb|AY597282.1| Pseudomonas viridiflava strain RMX23.1a pathogenicity island PAI-Region-2, partial sequence Length = 39285 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 tctgcgtctacgaagtgcca 182 |||||||||||||||||||| Sbjct: 9940 tctgcgtctacgaagtgcca 9959
>gb|AY597281.1| Pseudomonas viridiflava strain ME3.1b pathogenicity island PAI-Region-2, partial sequence Length = 39776 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 tctgcgtctacgaagtgcca 182 |||||||||||||||||||| Sbjct: 10444 tctgcgtctacgaagtgcca 10463
>emb|AL138878.10| Human DNA sequence from clone RP11-288G3 on chromosome 6 Contains the 3' end of the RIOK1 gene for RIO kinase 1 (yeast), a hetergeneous riboprotein L (HNRNP L) pseudogene, a ribosomal protein S26 pseudogene and a isocitrate dehydrogenase 1 (IDH1) pseudogene, complete sequence Length = 128320 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 gcatgttgttcctttgctca 343 |||||||||||||||||||| Sbjct: 87695 gcatgttgttcctttgctca 87714
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ggcgcggctggcggcgacgg 27 |||||||||||||||||||| Sbjct: 2796780 ggcgcggctggcggcgacgg 2796799
>gb|AC083751.6| Genomic sequence for Oryza sativa, Nipponbare strain, clone OSJNBa0042K08, from chromosome 2, complete sequence Length = 164628 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 ggcggcgacggttgcgggcg 36 |||||||||||||||||||| Sbjct: 37866 ggcggcgacggttgcgggcg 37847
>emb|BX323039.6| Zebrafish DNA sequence from clone CH211-145A11 in linkage group 10, complete sequence Length = 150772 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 214 agcagggtattttgcagtgt 233 |||||||||||||||||||| Sbjct: 113976 agcagggtattttgcagtgt 113995
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 ggcggcgacggttgcgggcg 36 |||||||||||||||||||| Sbjct: 7401612 ggcggcgacggttgcgggcg 7401631
>emb|AJ323855.1|HSA323855 Homo sapiens genomic sequence surrounding NotI site, clone NB1-840C Length = 1289 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 gcgctcatcggctggctctt 56 |||||||||||||||||||| Sbjct: 1004 gcgctcatcggctggctctt 1023
>emb|AM055942.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ia Length = 1923819 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 8 ggcgcggctggcggcgacgg 27 |||||||||||||||||||| Sbjct: 803008 ggcgcggctggcggcgacgg 803027
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 17 ggcggcgacggttgcgggcg 36 |||||||||||||||||||| Sbjct: 7471698 ggcggcgacggttgcgggcg 7471717
>emb|AM160766.1| Unidentified microorganism metagenome environmental cosmid clone 10D10, sub clone 10D10-P2 Length = 927 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 73 cgccagcgacgtcgcgcgac 92 |||||||||||||||||||| Sbjct: 610 cgccagcgacgtcgcgcgac 591
>dbj|AP006686.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT18K09, TM0380, complete sequence Length = 88931 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 332 ttcctttgctcattttggatggtt 355 ||||||||||||||||| |||||| Sbjct: 23605 ttcctttgctcattttgaatggtt 23628
>emb|AL390025.1| Human DNA sequence from clone RP3-336K20 on chromosome 6 Contains a pseudogene similar to hetergeneous riboprotein L (HNRNP L), to Ribosomal protein S26, a pseudogene similar to isocitrate dehydrogenase (NADP+), STSs and GSSs, complete sequence Length = 52747 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 324 gcatgttgttcctttgctca 343 |||||||||||||||||||| Sbjct: 12112 gcatgttgttcctttgctca 12131 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,516,058 Number of Sequences: 3902068 Number of extensions: 3516058 Number of successful extensions: 64328 Number of sequences better than 10.0: 31 Number of HSP's better than 10.0 without gapping: 31 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 63963 Number of HSP's gapped (non-prelim): 365 length of query: 522 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 499 effective length of database: 17,143,297,704 effective search space: 8554505554296 effective search space used: 8554505554296 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)