ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27p18 |
|---|---|
| Clone Library Name | barley_pub |
>PININ_BOVIN (P79122) Pinin| Length = 703 Score = 33.9 bits (76), Expect = 0.16 Identities = 24/100 (24%), Positives = 44/100 (44%), Gaps = 2/100 (2%) Frame = -3 Query: 366 REVPIIHXDILCYMSSRPWKGSYLQQEDEDMQELYIRIRHEAAVKSLTK--DMQQDDNKE 193 +E+PI+H D Q+E+E QE+ +++ E V+ K D Q ++ + Sbjct: 347 KEIPIVHSD-----------AEKEQEEEEQKQEMEVKMEEETEVRESEKQQDSQPEEVMD 395 Query: 192 VLKRFICLSNVQSKQXQPLVQQCQFTCTPEQGRCTNAYEP 73 VL+ + NV ++Q Q + P + + EP Sbjct: 396 VLEMVESVKNVIAEQEVMETNQVE-RVEPSENEASKELEP 434
>SYGB_VIBPA (Q87TP8) Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)| (Glycine--tRNA ligase beta chain) (GlyRS) Length = 688 Score = 32.7 bits (73), Expect = 0.36 Identities = 15/52 (28%), Positives = 34/52 (65%), Gaps = 4/52 (7%) Frame = -3 Query: 273 QELYIRIRHEAAVKSLTKDMQQ----DDNKEVLKRFICLSNVQSKQXQPLVQ 130 +E ++++ EA V ++ D + D+NK++L FI +SN++SK+ + +++ Sbjct: 265 EEEFLKVPSEALVYTMKGDQKYFPVYDENKKLLPNFIFVSNIESKEPRYVIE 316
>PRS6B_RAT (Q63570) 26S protease regulatory subunit 6B (TAT-binding protein 7)| (TBP-7) Length = 418 Score = 31.6 bits (70), Expect = 0.80 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 5/78 (6%) Frame = -3 Query: 351 IHXDILCYMSSRPWKG-SYLQQEDEDMQELYIR---IRHEAAVKSLTKDMQQDDNKEVLK 184 I +I SRP G S+L E ED+++LY R ++ E + ++ +D+ K + K Sbjct: 11 IQDEIPALSVSRPQTGLSFLGPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKK 70 Query: 183 RFI-CLSNVQSKQXQPLV 133 F+ V+ Q PLV Sbjct: 71 EFLHAQEEVKRIQSIPLV 88
>PRS6B_MOUSE (P54775) 26S protease regulatory subunit 6B (MIP224)| (MB67-interacting protein) (TAT-binding protein 7) (TBP-7) (CIP21) Length = 418 Score = 31.6 bits (70), Expect = 0.80 Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 5/78 (6%) Frame = -3 Query: 351 IHXDILCYMSSRPWKG-SYLQQEDEDMQELYIR---IRHEAAVKSLTKDMQQDDNKEVLK 184 I +I SRP G S+L E ED+++LY R ++ E + ++ +D+ K + K Sbjct: 11 IQDEIPALSVSRPQTGLSFLGPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKK 70 Query: 183 RFI-CLSNVQSKQXQPLV 133 F+ V+ Q PLV Sbjct: 71 EFLHAQEEVKRIQSIPLV 88
>PRS6B_HUMAN (P43686) 26S protease regulatory subunit 6B (MIP224)| (MB67-interacting protein) (TAT-binding protein 7) (TBP-7) Length = 418 Score = 30.8 bits (68), Expect = 1.4 Identities = 22/68 (32%), Positives = 36/68 (52%), Gaps = 5/68 (7%) Frame = -3 Query: 321 SRPWKG-SYLQQEDEDMQELYIR---IRHEAAVKSLTKDMQQDDNKEVLKRFI-CLSNVQ 157 SRP G S+L E ED+++LY R ++ E + ++ +D+ K + K F+ V+ Sbjct: 21 SRPQTGLSFLGPEPEDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVK 80 Query: 156 SKQXQPLV 133 Q PLV Sbjct: 81 RIQSIPLV 88
>NUCKS_MOUSE (Q80XU3) Nuclear ubiquitous casein and cyclin-dependent kinases| substrate (JC7) Length = 234 Score = 30.0 bits (66), Expect = 2.3 Identities = 16/69 (23%), Positives = 35/69 (50%) Frame = -3 Query: 306 GSYLQQEDEDMQELYIRIRHEAAVKSLTKDMQQDDNKEVLKRFICLSNVQSKQXQPLVQQ 127 G Q++ ED +E ++ + + + + + ++DD+K V ++ S SKQ + L++ Sbjct: 51 GKNSQEDSEDSEEKDVKTKKDDSHSAEDSEDEKDDHKNVRQQRQAASKAASKQREMLLED 110 Query: 126 CQFTCTPEQ 100 PE+ Sbjct: 111 VGSEEEPEE 119
>UVRA_OCEIH (Q8ENJ6) UvrABC system protein A (UvrA protein) (Excinuclease ABC| subunit A) Length = 958 Score = 30.0 bits (66), Expect = 2.3 Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 5/58 (8%) Frame = -3 Query: 309 KGSYLQQEDEDMQELYIRIRHEAAVKSLTKDMQQDDNKE-----VLKRFICLSNVQSK 151 KG +++ + QE Y+RIR + ++ +T D+Q + NK+ V+ R + V S+ Sbjct: 161 KGEHVKILENLKQEGYVRIRVDNEMREVTDDIQLEKNKKHSIEVVIDRIVVKDGVASR 218
>PININ_CANFA (P79149) Pinin| Length = 773 Score = 30.0 bits (66), Expect = 2.3 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 4/102 (3%) Frame = -3 Query: 366 REVPIIHXDILCYMSSRPWKGSYLQQEDEDMQELYIRIRHEAAVKSLTK--DMQQDDNKE 193 +E+ I+H D Q+E+E QE+ ++I E V+ K D Q ++ + Sbjct: 340 KEIGIVHSD-----------AEKEQEEEEQKQEMEVKIEEETEVRESEKQQDSQPEEVMD 388 Query: 192 VLKRF--ICLSNVQSKQXQPLVQQCQFTCTPEQGRCTNAYEP 73 VL+ + + NV ++Q Q + + P + + EP Sbjct: 389 VLEMLLHVAVKNVIAEQEVMETNQVE-SVEPSENETSKELEP 429
>NUCKS_RAT (Q9EPJ0) Nuclear ubiquitous casein and cyclin-dependent kinases| substrate Length = 243 Score = 30.0 bits (66), Expect = 2.3 Identities = 16/69 (23%), Positives = 35/69 (50%) Frame = -3 Query: 306 GSYLQQEDEDMQELYIRIRHEAAVKSLTKDMQQDDNKEVLKRFICLSNVQSKQXQPLVQQ 127 G Q++ ED +E ++ + + + + + ++DD+K V ++ S SKQ + L++ Sbjct: 51 GKNSQEDSEDSEEKDVKTKKDDSHSAEDSEDEKDDHKSVRQQRQAASKAASKQREMLLED 110 Query: 126 CQFTCTPEQ 100 PE+ Sbjct: 111 VGSEEEPEE 119
>KINH_MOUSE (Q61768) Kinesin heavy chain (Ubiquitous kinesin heavy chain)| (UKHC) Length = 963 Score = 29.6 bits (65), Expect = 3.0 Identities = 12/36 (33%), Positives = 26/36 (72%), Gaps = 1/36 (2%) Frame = -3 Query: 297 LQQEDEDMQELYIRI-RHEAAVKSLTKDMQQDDNKE 193 +++ ++++ +RI +HEA +KSLT+ +Q D+ K+ Sbjct: 622 MEENEKELAACQLRISQHEAKIKSLTEYLQNDEQKK 657
>INVO_MOUSE (P48997) Involucrin| Length = 467 Score = 29.3 bits (64), Expect = 3.9 Identities = 14/54 (25%), Positives = 29/54 (53%) Frame = -3 Query: 294 QQEDEDMQELYIRIRHEAAVKSLTKDMQQDDNKEVLKRFICLSNVQSKQXQPLV 133 QQ++ MQE ++R + + + + QQ +E ++ +CL Q +Q Q ++ Sbjct: 121 QQQEPQMQEQHLR-QQQQQQQQQQQQQQQQQQQETQEQGLCLGQKQQQQQQDML 173
>K0232_HUMAN (Q92628) Protein KIAA0232 (Fragment)| Length = 1402 Score = 28.5 bits (62), Expect = 6.7 Identities = 26/110 (23%), Positives = 53/110 (48%), Gaps = 5/110 (4%) Frame = -3 Query: 318 RPWKGSYLQQEDEDMQELYIRIRHEAAVKSLTKDMQQDDNKEVLKRFIC--LSNVQSKQX 145 + W S + D ++E+ + +AAV+ L + E L +C L ++QSKQ Sbjct: 98 KKWGKSKKKCSDLTLEEM----KKQAAVQCLRSASDESSGIETLVEELCSRLKDLQSKQE 153 Query: 144 QPLVQQCQFTCTPEQGRCTNAYEPLTMYN*NARTPL---PMNIQHLLYIF 4 + + ++ + + +PE A + + MY A PL P+ +Q ++ ++ Sbjct: 154 EKIHKKLEGSPSPEAELSPPAKDQVEMYY-EAFPPLSEKPVCLQEIMTVW 202
>PININ_MOUSE (O35691) Pinin| Length = 725 Score = 28.1 bits (61), Expect = 8.8 Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Frame = -3 Query: 294 QQEDEDMQELYIRIRHEAAVKSLTK--DMQQDDNKEVLKRFICLSNVQSKQXQPLVQQCQ 121 Q+E+E QE+ ++ EA V+ K D Q ++ +VL+ + +V ++Q Q + Sbjct: 352 QEEEEQKQEMEVKTEEEAEVREGEKQQDSQPEEVMDVLEMVESVKHVIAEQEVMETNQVE 411 Query: 120 FTCTPEQGRCTNAYEP 73 + P + + EP Sbjct: 412 -SIEPSENETSKELEP 426
>SYGB_PSEAE (Q9I7B8) Glycyl-tRNA synthetase beta chain (EC 6.1.1.14)| (Glycine--tRNA ligase beta chain) (GlyRS) Length = 684 Score = 28.1 bits (61), Expect = 8.8 Identities = 14/51 (27%), Positives = 30/51 (58%), Gaps = 4/51 (7%) Frame = -3 Query: 273 QELYIRIRHEAAVKSLTKDMQQ----DDNKEVLKRFICLSNVQSKQXQPLV 133 +E ++ + EA + ++ + + D N ++L RFI ++NV+SK + +V Sbjct: 261 EERFLEVPQEALITTMQDNQKYFCLLDANGKLLPRFITVANVESKAPENIV 311
>SPC98_DICDI (Q95ZG4) Spindle pole body component 98 (Spc98) (DdSpc98)| (Fragment) Length = 812 Score = 28.1 bits (61), Expect = 8.8 Identities = 17/49 (34%), Positives = 28/49 (57%) Frame = -3 Query: 294 QQEDEDMQELYIRIRHEAAVKSLTKDMQQDDNKEVLKRFICLSNVQSKQ 148 Q ED+++ E + I+ +K TK++ NKEVL+ I L + QS + Sbjct: 437 QGEDDEIIERKLLIKESKIIKEKTKELNY-INKEVLQEIIELVSRQSSE 484 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 55,926,175 Number of Sequences: 219361 Number of extensions: 996008 Number of successful extensions: 2677 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2619 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2677 length of database: 80,573,946 effective HSP length: 100 effective length of database: 58,637,846 effective search space used: 2286875994 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
