ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27p06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IBBWP_MAIZE (P31862) Bowman-Birk type wound-induced proteinase i... 50 6e-06
2PKSJ_BACSU (P40806) Putative polyketide synthase pksJ (PKS) 30 3.6
3DTX3_HUMAN (Q8N9I9) Protein deltex-3 (Deltex-3) (Deltex3) 30 6.1
4S230_PLAFO (P68875) Transmission-blocking target antigen S230 pr... 30 6.1
5S230_PLAF7 (P68874) Transmission-blocking target antigen S230 pr... 30 6.1

>IBBWP_MAIZE (P31862) Bowman-Birk type wound-induced proteinase inhibitor WIP1|
           precursor
          Length = 102

 Score = 49.7 bits (117), Expect = 6e-06
 Identities = 40/102 (39%), Positives = 45/102 (44%), Gaps = 17/102 (16%)
 Frame = -2

Query: 488 STKLXAILILQTVLVMGI---LSHVNA-------DFFP---KCCXNCR-SFSGVDVCDDA 351
           S  L  IL LQ  LVMG+   L+  NA       D  P   KCC NC  SFSG+  CDD 
Sbjct: 4   SPHLVLILCLQAALVMGVFAALAKENAMVESKAIDINPGQLKCCTNCNFSFSGLYTCDDV 63

Query: 350 HPQCP---KGCSAXRVVTPSPHKTFRCADMKSTVDGTCGGPC 234
              C    K C      + S +  FRC D   T  G CG  C
Sbjct: 64  KKDCDPVCKKCVVAVHASYSGNNKFRCTD---TFLGMCGPKC 102



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>PKSJ_BACSU (P40806) Putative polyketide synthase pksJ (PKS)|
          Length = 5045

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
 Frame = +1

Query: 247  QVPSTVLFMSAQRNVL*GL--GVTTRXAEQPLGHWGWASSQTST 372
            Q+P T +FMSA  N    L    TT   E P G+  W  +Q+ T
Sbjct: 1869 QIPQTSVFMSASNNSYRALLPSDTTESLETPDGYVSWVLAQSGT 1912



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>DTX3_HUMAN (Q8N9I9) Protein deltex-3 (Deltex-3) (Deltex3)|
          Length = 347

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = -2

Query: 191 VPPRIKLR*DEQSSCCYVCVWAVLYGQQYVRCLSSLC 81
           +PPR++   +EQ S C +C+  +   +   +C  S C
Sbjct: 149 LPPRLREEAEEQESTCPICLGEIQNAKTLEKCRHSFC 185



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>S230_PLAFO (P68875) Transmission-blocking target antigen S230 precursor|
          Length = 3135

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 363 DVDPREGPAVXAALGEEVGVNVGEDPHDQDGLE 461
           DVD   G  V   +GEEVG  VGE+  ++ G E
Sbjct: 376 DVDEEVGEEVGEEVGEEVGEEVGEEVGEEVGEE 408



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>S230_PLAF7 (P68874) Transmission-blocking target antigen S230 precursor|
          Length = 3135

 Score = 29.6 bits (65), Expect = 6.1
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = +3

Query: 363 DVDPREGPAVXAALGEEVGVNVGEDPHDQDGLE 461
           DVD   G  V   +GEEVG  VGE+  ++ G E
Sbjct: 376 DVDEEVGEEVGEEVGEEVGEEVGEEVGEEVGEE 408


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,978,548
Number of Sequences: 219361
Number of extensions: 1168055
Number of successful extensions: 3031
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3013
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4585734400
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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