Clone Name | rbasd27p05 |
---|---|
Clone Library Name | barley_pub |
>gb|AY549888.2| Triticum aestivum putative proteinase inhibitor-related protein (wrsi5-1) mRNA, complete cds Length = 608 Score = 597 bits (301), Expect = e-167 Identities = 410/444 (92%), Gaps = 3/444 (0%) Strand = Plus / Minus Query: 102 tacatattgttggccgtatagcacggcccacacacaaacatagcaacacgatgactgctc 161 ||||||||||||||||||||||||| |||||| | || ||||| | | |||||||||| Sbjct: 477 tacatattgttggccgtatagcacgacccacagagaagcatagg--cgccatgactgctc 420 Query: 162 atctcatctgagctttattctaggcggcacacctcgtccgagcctgaagccctgaagcga 221 ||||||||||||||||||| |||||||||| ||||||| ||| ||||||||||||| || Sbjct: 419 atctcatctgagctttattttaggcggcacccctcgtctgagactgaagccctgaacgga 360 Query: 222 tcagtgctttttgcatgggccaccgcaggtgccgtcgacggtgctcttcatgtcggcgca 281 |||||||||||||||||| || ||||||||||| |||||||||||||||||||||||||| Sbjct: 359 tcagtgctttttgcatggcccgccgcaggtgccatcgacggtgctcttcatgtcggcgca 300 Query: 282 gcggaacgtcttgtgagggctcggggtcaccacgcggcaggcggagcagcccttggggca 341 |||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||| Sbjct: 299 ccggaacgtcttgtgagggctgggcgtcaccacgcggcaggccgagcagcccttggggca 240 Query: 342 ctgggggtgggcgtcgtcgcagacgtcgacccccgagaaggacctgcagttgttgcagca 401 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct: 239 ctgggggtgggcgtcgtcgcagacgtcgaccccggagaaggacctgcagttgttgcagca 180 Query: 402 cttggggaagaagtcggcgttaacgtgggagaggatccccatgaccaggacggcctggag 461 ||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| Sbjct: 179 cttggggaagaagtcggcgttcacgtgtgagaggatccccatgaccaggacggcctggag 120 Query: 462 gatcaggatcgccgcgagcttggtgctcttcatggctgccgatgaactctcttagcgcaa 521 |||||||||||||||||||||||||||||||||| ||| ||||||| || ||||||||| Sbjct: 119 gatcaggatcgccgcgagcttggtgctcttcatgcttgctgatgaaccct-ttagcgcaa 61 Query: 522 agctcgagctttacctgtgcggtc 545 ||||| ||| |||||||||||| Sbjct: 60 agctctcacttcacctgtgcggtc 37
>emb|Z48729.1|HVBSI1 H.vulgare Bsi1 gene for putative protease inhibitor Length = 498 Score = 315 bits (159), Expect = 9e-83 Identities = 257/289 (88%), Gaps = 3/289 (1%) Strand = Plus / Minus Query: 217 agcgatcagtgctttttgcatgggccaccgcaggtgccgtcgacggtgctcttcatgtcg 276 |||||||||| ||| |||||||| || ||||||||||||||||||||| ||||||||| Sbjct: 286 agcgatcagtacttcttgcatggcccgccgcaggtgccgtcgacggtggctttcatgtcg 227 Query: 277 gcgcagcggaacgtcttgtgagggctcggggtcaccacgcggcaggcggagcagcccttg 336 |||||||||||||||| | ||| ||| ||||||||||||||| || |||||||| || Sbjct: 226 gcgcagcggaacgtctgg---gggttcgtggtcaccacgcggcacgccgagcagccggtg 170 Query: 337 gggcactgggggtgggcgtcgtcgcagacgtcgacccccgagaaggacctgcagttgttg 396 |||||||| || |||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct: 169 gggcactgcggatgggcgtcgtcgcagacgtcgaccccggagaaggacctgcagttgttg 110 Query: 397 cagcacttggggaagaagtcggcgttaacgtgggagaggatccccatgaccaggacggcc 456 |||||| ||||||| || ||||||| ||||| ||||||| |||||||||||||||||| Sbjct: 109 cagcacgtggggaaatagacggcgttcacgtgcgagaggactcccatgaccaggacggcc 50 Query: 457 tggaggatcaggatcgccgcgagcttggtgctcttcatggctgccgatg 505 ||||||||||| ||||||||||||||||||| |||||||| ||| |||| Sbjct: 49 tggaggatcagaatcgccgcgagcttggtgcccttcatggttgctgatg 1
>gb|L11882.1|WHTWALI5A Triticum aestivum protein of unknown function (wali5) mRNA, complete cds Length = 520 Score = 295 bits (149), Expect = 8e-77 Identities = 250/283 (88%), Gaps = 3/283 (1%) Strand = Plus / Minus Query: 214 tgaagcgatcagtgctttttgcatgggccaccgcaggtgccgtcgacggtgctcttcatg 273 |||| |||||||| ||| ||||| || |||||||||||||||||||||||| ||||| Sbjct: 350 tgaaccgatcagtacttcttgcagggtccaccgcaggtgccgtcgacggtggatttcata 291 Query: 274 tcggcgcagcggaacgtcttgtgagggctcggggtcaccacgcggcaggcggagcagccc 333 || |||||||| || | | | ||||||| | |||||||||||| || ||||||||| Sbjct: 290 tccgcgcagcgccacatttcg---gggctcgtcgacaccacgcggcacgccgagcagccc 234 Query: 334 ttggggcactgggggtgggcgtcgtcgcagacgtcgacccccgagaaggacctgcagttg 393 | ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 233 tggggacacttggggtgggcgtcgtcgcagacgtcgacccccgagaaggacctgcagttg 174 Query: 394 ttgcagcacttggggaagaagtcggcgttaacgtgggagaggatccccatgaccaggacg 453 ||||||||||||||||| || |||||||| ||||| ||||||| ||||||||||||||| Sbjct: 173 ttgcagcacttggggaaaaaatcggcgttcacgtgtgagaggagtcccatgaccaggacg 114 Query: 454 gcctggaggatcaggatcgccgcgagcttggtgctcttcatgg 496 |||||||||||||||||||||||||||||||||| |||||||| Sbjct: 113 gcctggaggatcaggatcgccgcgagcttggtgcccttcatgg 71 Score = 77.8 bits (39), Expect = 3e-11 Identities = 45/47 (95%) Strand = Plus / Minus Query: 46 caacaagcaacaccagctttttctcgagagagaaaacacagtgacga 92 ||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct: 513 caacaagcaacaccaactttttctcgagagagaaaacacagcgacga 467
>gb|L28009.1|WHTWALIA Triticum aestivum (wali6) mRNA, complete cds Length = 585 Score = 117 bits (59), Expect = 4e-23 Identities = 133/157 (84%), Gaps = 3/157 (1%) Strand = Plus / Minus Query: 338 ggcactgggggtgggcgtcgtcgcagacgtcgacccccgagaaggacctgcagttgttgc 397 |||||| |||| ||||||||||||||| || ||||||||||| |||||||||||| || Sbjct: 229 ggcacttggggccggcgtcgtcgcagaccacggcccccgagaagaacctgcagttgtcgc 170 Query: 398 agcacttggggaagaagtcggcgttaacgtgggagaggatccccatgaccaggacggcct 457 |||| || ||||| |||||||| | || |||||||| ||||||||||||||||||| Sbjct: 169 agcatttcgggaac---tcggcgttcgcctgtgagaggattcccatgaccaggacggcct 113 Query: 458 ggaggatcaggatcgccgcgagcttggtgctcttcat 494 |||| |||||||||||| ||||| || | |||||||| Sbjct: 112 ggagaatcaggatcgccacgagcgtgctactcttcat 76
>gb|L11881.1|WHTWALI3A Triticum aestivum protein of unknown function (wali3) mRNA, complete cds Length = 564 Score = 109 bits (55), Expect = 1e-20 Identities = 114/133 (85%), Gaps = 3/133 (2%) Strand = Plus / Minus Query: 338 ggcactgggggtgggcgtcgtcgcagacgtcgacccccgagaaggacctgcagttgttgc 397 |||||| |||| |||||| |||||||| || ||||||||||| |||||||||||| || Sbjct: 208 ggcacttggggccggcgtcatcgcagaccacggcccccgagaagaacctgcagttgtcgc 149 Query: 398 agcacttggggaagaagtcggcgttaacgtgggagaggatccccatgaccaggacggcct 457 |||||||||| ||| |||||||| | || |||||||| ||||||||||||||||||| Sbjct: 148 agcacttggg---gaactcggcgttcgcctgtgagaggattcccatgaccaggacggcct 92 Query: 458 ggaggatcaggat 470 | ||||||||||| Sbjct: 91 gaaggatcaggat 79
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 436 atccccatgaccaggacggcctggaggatcaggatcgccgcgagcttggtgctcttcatg 495 |||||||||||||||||||||||||| | ||||||| || |||| || ||||||||||| Sbjct: 1757672 atccccatgaccaggacggcctggagaaccaggatcaccatgagcgtgctgctcttcatg 1757731 Query: 496 gc 497 || Sbjct: 1757732 gc 1757733
>dbj|AP002526.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0504H10 Length = 143515 Score = 67.9 bits (34), Expect = 3e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 436 atccccatgaccaggacggcctggaggatcaggatcgccgcgagcttggtgctcttcatg 495 |||||||||||||||||||||||||| | ||||||| || |||| || ||||||||||| Sbjct: 100015 atccccatgaccaggacggcctggagaaccaggatcaccatgagcgtgctgctcttcatg 100074 Query: 496 gc 497 || Sbjct: 100075 gc 100076
>ref|NM_184249.1| Oryza sativa (japonica cultivar-group), mRNA Length = 306 Score = 61.9 bits (31), Expect = 2e-06 Identities = 52/59 (88%) Strand = Plus / Minus Query: 436 atccccatgaccaggacggcctggaggatcaggatcgccgcgagcttggtgctcttcat 494 |||||||||||||||||||||||||| | ||||||| || |||| || |||||||||| Sbjct: 59 atccccatgaccaggacggcctggagaaccaggatcaccatgagcgtgctgctcttcat 1
>gb|AY641412.1| Hordeum vulgare subsp. vulgare retrotransposon Sandra5, complete sequence; splicing factor SF2-like protein (SF2) and universal stress protein (USP1) genes and Hv receptor-kinase-like pseudogene, complete cds; and retrotransposons Sandra6 and Sandra7, complete sequence Length = 82293 Score = 56.0 bits (28), Expect = 1e-04 Identities = 34/36 (94%) Strand = Plus / Minus Query: 428 gggagaggatccccatgaccaggacggcctggagga 463 |||||||||| ||||||||||||| ||||||||||| Sbjct: 71845 gggagaggattcccatgaccaggatggcctggagga 71810
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 429 ggagaggatccccatgaccagga 451 ||||||||||||||||||||||| Sbjct: 25930540 ggagaggatccccatgaccagga 25930562
>dbj|AP003568.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0017B12 Length = 157424 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Plus Query: 429 ggagaggatccccatgaccagga 451 ||||||||||||||||||||||| Sbjct: 85638 ggagaggatccccatgaccagga 85660
>dbj|AK070101.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023044I16, full insert sequence Length = 2261 Score = 46.1 bits (23), Expect = 0.12 Identities = 23/23 (100%) Strand = Plus / Minus Query: 429 ggagaggatccccatgaccagga 451 ||||||||||||||||||||||| Sbjct: 840 ggagaggatccccatgaccagga 818
>emb|AL358787.12| Human DNA sequence from clone RP11-181F12 on chromosome 10 Contains a novel gene, complete sequence Length = 118034 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 43 attcaacaagcaacaccagct 63 ||||||||||||||||||||| Sbjct: 45438 attcaacaagcaacaccagct 45458
>gb|CP000133.1| Rhizobium etli CFN 42, complete genome Length = 4381608 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Plus Query: 452 cggcctggaggatcaggatcgccgc 476 |||| |||||||||||||||||||| Sbjct: 1946720 cggcgtggaggatcaggatcgccgc 1946744
>gb|CP000138.1| Rhizobium etli CFN 42 plasmid p42f, complete sequence Length = 642517 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 251 tgccgtcgacggtgctcttca 271 ||||||||||||||||||||| Sbjct: 634922 tgccgtcgacggtgctcttca 634902
>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome Length = 6438405 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 386 tgcagttgttgcagcacttg 405 |||||||||||||||||||| Sbjct: 2027872 tgcagttgttgcagcacttg 2027891
>ref|NM_001040330.1| Danio rerio zgc:136662 (zgc:136662), mRNA Length = 2659 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 gcaggtgccgtcgacggtgc 265 |||||||||||||||||||| Sbjct: 1389 gcaggtgccgtcgacggtgc 1408
>gb|AC115055.9| Mus musculus chromosome 3, clone RP24-346I12, complete sequence Length = 204367 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 130 cacacacaaacatagcaaca 149 |||||||||||||||||||| Sbjct: 91873 cacacacaaacatagcaaca 91892
>ref|XM_753018.1| Ustilago maydis 521 hypothetical protein (UM01964.1) partial mRNA Length = 1812 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 tggtgctcttcatggctgcc 501 |||||||||||||||||||| Sbjct: 248 tggtgctcttcatggctgcc 267
>gb|AC117230.3| Mus musculus BAC clone RP23-385F15 from 16, complete sequence Length = 184556 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 40 tttattcaacaagcaacacc 59 |||||||||||||||||||| Sbjct: 83217 tttattcaacaagcaacacc 83198
>ref|NM_001012370.1| Danio rerio exostoses (multiple) 1c (ext1c), mRNA Length = 2214 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 gcaggtgccgtcgacggtgc 265 |||||||||||||||||||| Sbjct: 1137 gcaggtgccgtcgacggtgc 1156
>gb|BC115216.1| Danio rerio exostoses (multiple) 1c, mRNA (cDNA clone MGC:136662 IMAGE:8000407), complete cds Length = 2659 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 gcaggtgccgtcgacggtgc 265 |||||||||||||||||||| Sbjct: 1389 gcaggtgccgtcgacggtgc 1408
>gb|AC090116.15| Homo sapiens 12q BAC RP11-578B16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 162004 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 ctgctcatctcatctgagct 175 |||||||||||||||||||| Sbjct: 86150 ctgctcatctcatctgagct 86131
>ref|XM_680169.1| PREDICTED: Danio rerio similar to EXT1c (LOC572763), partial mRNA Length = 240 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 gcaggtgccgtcgacggtgc 265 |||||||||||||||||||| Sbjct: 117 gcaggtgccgtcgacggtgc 136
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 229 tttttgcatgggccaccgca 248 |||||||||||||||||||| Sbjct: 1357636 tttttgcatgggccaccgca 1357655
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 tcatgtcggcgcagcggaac 288 |||||||||||||||||||| Sbjct: 807692 tcatgtcggcgcagcggaac 807673
>dbj|BS000238.1| Pan troglodytes chromosome 22 clone:PTB-016O01, map 22, complete sequences Length = 168017 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 ggggcactgggggtgggcgt 355 |||||||||||||||||||| Sbjct: 156639 ggggcactgggggtgggcgt 156620
>gb|AF042096.3|AF042096 Bradyrhizobium japonicum UbiE (ubiE) gene, partial cds; AarF (aarF), panthotenate metabolism flavoprotein (dfp), deoxyuridine-triphosphatase (dut), putative sensor protein (bdfA), GalF-like (galF), hypothetical protein genes, complete cds; putative helicase 2 gene, partial cds; and unknown genes Length = 13289 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 tcatgtcggcgcagcggaac 288 |||||||||||||||||||| Sbjct: 8347 tcatgtcggcgcagcggaac 8366
>emb|AL954242.1|PTB109N16 Pan troglodytes chromosome 22 BAC PTB-109N16, complete sequence Length = 190477 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 336 ggggcactgggggtgggcgt 355 |||||||||||||||||||| Sbjct: 61465 ggggcactgggggtgggcgt 61446
>gb|AY734457.1| Danio rerio EXT1c mRNA, complete cds Length = 2214 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 246 gcaggtgccgtcgacggtgc 265 |||||||||||||||||||| Sbjct: 1137 gcaggtgccgtcgacggtgc 1156
>emb|AM118080.1| Ustilago hordei mating type region MAT-1, strain 364 Length = 526707 Score = 40.1 bits (20), Expect = 7.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 476 cgagcttggtgctcttcatggctg 499 |||||||||| ||||||||||||| Sbjct: 158334 cgagcttggtcctcttcatggctg 158311
>gb|AC144631.3| Mus musculus BAC clone RP23-112C14 from 3, complete sequence Length = 179548 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 18 acacgcacaaccatcagagg 37 |||||||||||||||||||| Sbjct: 135481 acacgcacaaccatcagagg 135462
>gb|AC058786.24| Mus musculus strain C57BL/6J chromosome 4 clone rp23-117o7, complete sequence Length = 209737 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 122 gcacggcccacacacaaaca 141 |||||||||||||||||||| Sbjct: 97271 gcacggcccacacacaaaca 97290
>emb|AL732476.12| Mouse DNA sequence from clone RP23-131A6 on chromosome 4, complete sequence Length = 194554 Score = 40.1 bits (20), Expect = 7.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 122 gcacggcccacacacaaaca 141 |||||||||||||||||||| Sbjct: 8245 gcacggcccacacacaaaca 8226 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,268,556 Number of Sequences: 3902068 Number of extensions: 4268556 Number of successful extensions: 84893 Number of sequences better than 10.0: 34 Number of HSP's better than 10.0 without gapping: 34 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 84559 Number of HSP's gapped (non-prelim): 330 length of query: 561 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 538 effective length of database: 17,143,297,704 effective search space: 9223094164752 effective search space used: 9223094164752 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)