Clone Name | rbasd27p03 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_450621.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2102 Score = 167 bits (84), Expect = 6e-38 Identities = 136/152 (89%), Gaps = 1/152 (0%) Strand = Plus / Minus Query: 530 tccagggaagctccgggaacatggctgctatctgatgctctttcagcctgagctggaggc 589 ||||||| || || |||||||||||||||||||| || || |||| |||||||||||||| Sbjct: 1440 tccaggggagttcagggaacatggctgctatctggtgttccttcaacctgagctggaggc 1381 Query: 590 atatgttctccagctgcagcattttcagccactgcttacacgcaaaggaggtgtgaggcc 649 ||||||||||||||||||||||||||||||| ||||| |||||||| ||| || |||||| Sbjct: 1380 atatgttctccagctgcagcattttcagccattgcttgcacgcaaa-gagatgagaggcc 1322 Query: 650 tgacgaaacaatagcttgacgacgtggtcttt 681 ||||| || |||||||||| ||| |||||||| Sbjct: 1321 tgacggaataatagcttgatgacatggtcttt 1290 Score = 40.1 bits (20), Expect = 9.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 341 gaacttacaacctgggcagcagccaccc 368 |||||||||||||||||| |||||||| Sbjct: 1626 gaacttacaacctgggcaagagccaccc 1599
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 167 bits (84), Expect = 6e-38 Identities = 136/152 (89%), Gaps = 1/152 (0%) Strand = Plus / Minus Query: 530 tccagggaagctccgggaacatggctgctatctgatgctctttcagcctgagctggaggc 589 ||||||| || || |||||||||||||||||||| || || |||| |||||||||||||| Sbjct: 11853695 tccaggggagttcagggaacatggctgctatctggtgttccttcaacctgagctggaggc 11853636 Query: 590 atatgttctccagctgcagcattttcagccactgcttacacgcaaaggaggtgtgaggcc 649 ||||||||||||||||||||||||||||||| ||||| |||||||| ||| || |||||| Sbjct: 11853635 atatgttctccagctgcagcattttcagccattgcttgcacgcaaa-gagatgagaggcc 11853577 Query: 650 tgacgaaacaatagcttgacgacgtggtcttt 681 ||||| || |||||||||| ||| |||||||| Sbjct: 11853576 tgacggaataatagcttgatgacatggtcttt 11853545 Score = 40.1 bits (20), Expect = 9.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 341 gaacttacaacctgggcagcagccaccc 368 |||||||||||||||||| |||||||| Sbjct: 11853881 gaacttacaacctgggcaagagccaccc 11853854
>dbj|AP005675.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1001_G09 Length = 118018 Score = 167 bits (84), Expect = 6e-38 Identities = 136/152 (89%), Gaps = 1/152 (0%) Strand = Plus / Minus Query: 530 tccagggaagctccgggaacatggctgctatctgatgctctttcagcctgagctggaggc 589 ||||||| || || |||||||||||||||||||| || || |||| |||||||||||||| Sbjct: 35185 tccaggggagttcagggaacatggctgctatctggtgttccttcaacctgagctggaggc 35126 Query: 590 atatgttctccagctgcagcattttcagccactgcttacacgcaaaggaggtgtgaggcc 649 ||||||||||||||||||||||||||||||| ||||| |||||||| ||| || |||||| Sbjct: 35125 atatgttctccagctgcagcattttcagccattgcttgcacgcaaa-gagatgagaggcc 35067 Query: 650 tgacgaaacaatagcttgacgacgtggtcttt 681 ||||| || |||||||||| ||| |||||||| Sbjct: 35066 tgacggaataatagcttgatgacatggtcttt 35035 Score = 40.1 bits (20), Expect = 9.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 341 gaacttacaacctgggcagcagccaccc 368 |||||||||||||||||| |||||||| Sbjct: 35371 gaacttacaacctgggcaagagccaccc 35344
>dbj|AP005572.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1506_A04 Length = 114998 Score = 167 bits (84), Expect = 6e-38 Identities = 136/152 (89%), Gaps = 1/152 (0%) Strand = Plus / Minus Query: 530 tccagggaagctccgggaacatggctgctatctgatgctctttcagcctgagctggaggc 589 ||||||| || || |||||||||||||||||||| || || |||| |||||||||||||| Sbjct: 96513 tccaggggagttcagggaacatggctgctatctggtgttccttcaacctgagctggaggc 96454 Query: 590 atatgttctccagctgcagcattttcagccactgcttacacgcaaaggaggtgtgaggcc 649 ||||||||||||||||||||||||||||||| ||||| |||||||| ||| || |||||| Sbjct: 96453 atatgttctccagctgcagcattttcagccattgcttgcacgcaaa-gagatgagaggcc 96395 Query: 650 tgacgaaacaatagcttgacgacgtggtcttt 681 ||||| || |||||||||| ||| |||||||| Sbjct: 96394 tgacggaataatagcttgatgacatggtcttt 96363 Score = 40.1 bits (20), Expect = 9.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 341 gaacttacaacctgggcagcagccaccc 368 |||||||||||||||||| |||||||| Sbjct: 96699 gaacttacaacctgggcaagagccaccc 96672
>dbj|AK065312.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002O19, full insert sequence Length = 2103 Score = 167 bits (84), Expect = 6e-38 Identities = 136/152 (89%), Gaps = 1/152 (0%) Strand = Plus / Minus Query: 530 tccagggaagctccgggaacatggctgctatctgatgctctttcagcctgagctggaggc 589 ||||||| || || |||||||||||||||||||| || || |||| |||||||||||||| Sbjct: 1440 tccaggggagttcagggaacatggctgctatctggtgttccttcaacctgagctggaggc 1381 Query: 590 atatgttctccagctgcagcattttcagccactgcttacacgcaaaggaggtgtgaggcc 649 ||||||||||||||||||||||||||||||| ||||| |||||||| ||| || |||||| Sbjct: 1380 atatgttctccagctgcagcattttcagccattgcttgcacgcaaa-gagatgagaggcc 1322 Query: 650 tgacgaaacaatagcttgacgacgtggtcttt 681 ||||| || |||||||||| ||| |||||||| Sbjct: 1321 tgacggaataatagcttgatgacatggtcttt 1290 Score = 40.1 bits (20), Expect = 9.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 341 gaacttacaacctgggcagcagccaccc 368 |||||||||||||||||| |||||||| Sbjct: 1626 gaacttacaacctgggcaagagccaccc 1599
>gb|BT018475.1| Zea mays clone EL01N0423G03.d mRNA sequence Length = 1836 Score = 139 bits (70), Expect = 1e-29 Identities = 140/162 (86%), Gaps = 1/162 (0%) Strand = Plus / Minus Query: 517 tccttcatcaccgtccagggaagctccgggaacatggctgctatctgatgctctttcagc 576 ||||||| || | |||| ||||| ||||||||||||| ||||||||| || ||||| | | Sbjct: 1235 tccttcaccaacatccatggaaggtccgggaacatggttgctatctggtgttctttgaac 1176 Query: 577 ctgagctggaggcatatgttctccagctgcagcattttcagccactgcttacacgcaaag 636 |||||||| ||||||||||| ||||||||||||||||||| ||||||||| || || || Sbjct: 1175 ctgagctgaaggcatatgttttccagctgcagcattttcaaccactgcttgcatgcgaa- 1117 Query: 637 gaggtgtgaggcctgacgaaacaatagcttgacgacgtggtc 678 |||||||||||| ||||| |||| |||||||| ||| ||||| Sbjct: 1116 gaggtgtgaggcttgacggaacagtagcttgatgacatggtc 1075 Score = 50.1 bits (25), Expect = 0.010 Identities = 58/69 (84%) Strand = Plus / Minus Query: 354 gggcagcagccacccaaaggtccatccaaggagcaaccctgcgccgacgatgccaacgcc 413 |||||| |||||||||| ||||||||||| ||||| || || || ||||| ||||| || Sbjct: 1395 gggcagtagccacccaagagtccatccaagaagcaatccagcaccaacgataccaacacc 1336 Query: 414 aactgcaaa 422 ||| ||||| Sbjct: 1335 aacagcaaa 1327
>gb|AY106243.1| Zea mays PCO078911 mRNA sequence Length = 958 Score = 139 bits (70), Expect = 1e-29 Identities = 140/162 (86%), Gaps = 1/162 (0%) Strand = Plus / Minus Query: 517 tccttcatcaccgtccagggaagctccgggaacatggctgctatctgatgctctttcagc 576 ||||||| || | |||| ||||| ||||||||||||| ||||||||| || ||||| | | Sbjct: 272 tccttcaccaacatccatggaaggtccgggaacatggttgctatctggtgttctttgaac 213 Query: 577 ctgagctggaggcatatgttctccagctgcagcattttcagccactgcttacacgcaaag 636 |||||||| ||||||||||| ||||||||||||||||||| ||||||||| || || || Sbjct: 212 ctgagctgaaggcatatgttttccagctgcagcattttcaaccactgcttgcatgcgaa- 154 Query: 637 gaggtgtgaggcctgacgaaacaatagcttgacgacgtggtc 678 |||||||||||| ||||| |||| |||||||| ||| ||||| Sbjct: 153 gaggtgtgaggcttgacggaacagtagcttgatgacatggtc 112 Score = 50.1 bits (25), Expect = 0.010 Identities = 58/69 (84%) Strand = Plus / Minus Query: 354 gggcagcagccacccaaaggtccatccaaggagcaaccctgcgccgacgatgccaacgcc 413 |||||| |||||||||| ||||||||||| ||||| || || || ||||| ||||| || Sbjct: 432 gggcagtagccacccaagagtccatccaagaagcaatccagcaccaacgataccaacacc 373 Query: 414 aactgcaaa 422 ||| ||||| Sbjct: 372 aacagcaaa 364
>gb|AY110318.1| Zea mays CL36574_1 mRNA sequence Length = 959 Score = 81.8 bits (41), Expect = 3e-12 Identities = 105/125 (84%), Gaps = 1/125 (0%) Strand = Plus / Minus Query: 550 atggctgctatctgatgctctttcagcctgagctggaggcatatgttctccagctgcagc 609 ||||||||||||||||||||||| | ||||||| ||| || ||||||||||||| Sbjct: 579 atggctgctatctgatgctctttgttcttgagctgcaggacaatattctccagctgcatt 520 Query: 610 attttcagccactgcttacacgcaaaggaggtgtgaggcctgacgaaacaatagcttgac 669 |||||||||||||| || |||||||| ||| ||||||||||| || | ||| ||||||| Sbjct: 519 attttcagccactggttgcacgcaaa-gagatgtgaggcctgtcggagcaaaagcttgat 461 Query: 670 gacgt 674 ||||| Sbjct: 460 gacgt 456
>ref|XM_482261.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2121 Score = 65.9 bits (33), Expect = 2e-07 Identities = 109/133 (81%), Gaps = 1/133 (0%) Strand = Plus / Minus Query: 549 catggctgctatctgatgctctttcagcctgagctggaggcatatgttctccagctgcag 608 ||||| |||||||||||||||| | | | ||||||||||| |||||||||| ||| | Sbjct: 1488 catggttgctatctgatgctctctgtgtttaagctggaggcagatgttctccaactgtaa 1429 Query: 609 cattttcagccactgcttacacgcaaaggaggtgtgaggcctgacgaaacaatagcttga 668 |||||||||||| || || |||||||| ||| || |||||||| | || |||||||||| Sbjct: 1428 cattttcagccattgtttgcacgcaaa-gagatgcgaggcctgtctgaaaaatagcttga 1370 Query: 669 cgacgtggtcttt 681 ||| | |||||| Sbjct: 1369 tgacatcgtcttt 1357
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 65.9 bits (33), Expect = 2e-07 Identities = 109/133 (81%), Gaps = 1/133 (0%) Strand = Plus / Minus Query: 549 catggctgctatctgatgctctttcagcctgagctggaggcatatgttctccagctgcag 608 ||||| |||||||||||||||| | | | ||||||||||| |||||||||| ||| | Sbjct: 19090961 catggttgctatctgatgctctctgtgtttaagctggaggcagatgttctccaactgtaa 19090902 Query: 609 cattttcagccactgcttacacgcaaaggaggtgtgaggcctgacgaaacaatagcttga 668 |||||||||||| || || |||||||| ||| || |||||||| | || |||||||||| Sbjct: 19090901 cattttcagccattgtttgcacgcaaa-gagatgcgaggcctgtctgaaaaatagcttga 19090843 Query: 669 cgacgtggtcttt 681 ||| | |||||| Sbjct: 19090842 tgacatcgtcttt 19090830
>dbj|AP003904.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1051_A08 Length = 137583 Score = 65.9 bits (33), Expect = 2e-07 Identities = 109/133 (81%), Gaps = 1/133 (0%) Strand = Plus / Minus Query: 549 catggctgctatctgatgctctttcagcctgagctggaggcatatgttctccagctgcag 608 ||||| |||||||||||||||| | | | ||||||||||| |||||||||| ||| | Sbjct: 115748 catggttgctatctgatgctctctgtgtttaagctggaggcagatgttctccaactgtaa 115689 Query: 609 cattttcagccactgcttacacgcaaaggaggtgtgaggcctgacgaaacaatagcttga 668 |||||||||||| || || |||||||| ||| || |||||||| | || |||||||||| Sbjct: 115688 cattttcagccattgtttgcacgcaaa-gagatgcgaggcctgtctgaaaaatagcttga 115630 Query: 669 cgacgtggtcttt 681 ||| | |||||| Sbjct: 115629 tgacatcgtcttt 115617
>dbj|AP005388.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0086F04 Length = 163579 Score = 65.9 bits (33), Expect = 2e-07 Identities = 109/133 (81%), Gaps = 1/133 (0%) Strand = Plus / Minus Query: 549 catggctgctatctgatgctctttcagcctgagctggaggcatatgttctccagctgcag 608 ||||| |||||||||||||||| | | | ||||||||||| |||||||||| ||| | Sbjct: 13326 catggttgctatctgatgctctctgtgtttaagctggaggcagatgttctccaactgtaa 13267 Query: 609 cattttcagccactgcttacacgcaaaggaggtgtgaggcctgacgaaacaatagcttga 668 |||||||||||| || || |||||||| ||| || |||||||| | || |||||||||| Sbjct: 13266 cattttcagccattgtttgcacgcaaa-gagatgcgaggcctgtctgaaaaatagcttga 13208 Query: 669 cgacgtggtcttt 681 ||| | |||||| Sbjct: 13207 tgacatcgtcttt 13195
>dbj|AK067617.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013109M02, full insert sequence Length = 2121 Score = 65.9 bits (33), Expect = 2e-07 Identities = 109/133 (81%), Gaps = 1/133 (0%) Strand = Plus / Minus Query: 549 catggctgctatctgatgctctttcagcctgagctggaggcatatgttctccagctgcag 608 ||||| |||||||||||||||| | | | ||||||||||| |||||||||| ||| | Sbjct: 1488 catggttgctatctgatgctctctgtgtttaagctggaggcagatgttctccaactgtaa 1429 Query: 609 cattttcagccactgcttacacgcaaaggaggtgtgaggcctgacgaaacaatagcttga 668 |||||||||||| || || |||||||| ||| || |||||||| | || |||||||||| Sbjct: 1428 cattttcagccattgtttgcacgcaaa-gagatgcgaggcctgtctgaaaaatagcttga 1370 Query: 669 cgacgtggtcttt 681 ||| | |||||| Sbjct: 1369 tgacatcgtcttt 1357
>ref|XM_426022.1| PREDICTED: Gallus gallus similar to RIKEN cDNA 9330128H10 gene (LOC428462), mRNA Length = 3339 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 429 ggccttgcagaagccaccttcc 450 |||||||||||||||||||||| Sbjct: 156 ggccttgcagaagccaccttcc 135
>gb|AY655708.1| Mus musculus clusterin-like protein 1 (Clul1) mRNA, complete cds Length = 1409 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 458 gcctcctgcttttcttctttgc 479 |||||||||||||||||||||| Sbjct: 272 gcctcctgcttttcttctttgc 251
>gb|AY655707.1| Rattus norvegicus clusterin-like protein 1 (Clul1) mRNA, complete cds Length = 1443 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 458 gcctcctgcttttcttctttgc 479 |||||||||||||||||||||| Sbjct: 305 gcctcctgcttttcttctttgc 284
>emb|AL132792.2|DMBR19J1 Drosophila melanogaster BAC clone BACR19J1 Length = 95463 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 466 cttttcttctttgccctgcctt 487 |||||||||||||||||||||| Sbjct: 71358 cttttcttctttgccctgcctt 71379
>gb|AC103548.8| Drosophila melanogaster X BAC RP98-19J1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 182490 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 466 cttttcttctttgccctgcctt 487 |||||||||||||||||||||| Sbjct: 82824 cttttcttctttgccctgcctt 82845
>tpg|BK000917.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M308, complete sequence Length = 11172 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Plus Query: 495 ctcttctggctccgccttctcctcct 520 |||||||||||||||| ||||||||| Sbjct: 8665 ctcttctggctccgccgtctcctcct 8690
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Minus Query: 495 ctcttctggctccgccttctcctcct 520 |||||||||||||||| ||||||||| Sbjct: 2092367 ctcttctggctccgccgtctcctcct 2092342
>emb|AL731602.3|OSJN00251 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0059H15, complete sequence Length = 149181 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Minus Query: 495 ctcttctggctccgccttctcctcct 520 |||||||||||||||| ||||||||| Sbjct: 6995 ctcttctggctccgccgtctcctcct 6970
>gb|AE003418.4| Drosophila melanogaster chromosome X, section 2 of 74 of the complete sequence Length = 315092 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Plus Query: 466 cttttcttctttgccctgcctt 487 |||||||||||||||||||||| Sbjct: 220829 cttttcttctttgccctgcctt 220850
>emb|AL662985.3|OSJN00189 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0095H06, complete sequence Length = 126447 Score = 44.1 bits (22), Expect = 0.60 Identities = 25/26 (96%) Strand = Plus / Minus Query: 495 ctcttctggctccgccttctcctcct 520 |||||||||||||||| ||||||||| Sbjct: 109027 ctcttctggctccgccgtctcctcct 109002
>ref|NM_001033071.1| Rattus norvegicus clusterin-like 1 (retinal) (Clul1), mRNA Length = 1443 Score = 44.1 bits (22), Expect = 0.60 Identities = 22/22 (100%) Strand = Plus / Minus Query: 458 gcctcctgcttttcttctttgc 479 |||||||||||||||||||||| Sbjct: 305 gcctcctgcttttcttctttgc 284
>ref|NM_193526.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1575 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 500 ctggctccgccttctcctcct 520 ||||||||||||||||||||| Sbjct: 830 ctggctccgccttctcctcct 810
>emb|AL121887.24|HS1040G13 Human DNA sequence from clone RP5-1040G13 on chromosome 20 Contains ESTs, STSs and GSSs, complete sequence Length = 113473 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 254 ttcaaccattttcattctcct 274 ||||||||||||||||||||| Sbjct: 31033 ttcaaccattttcattctcct 31013
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 500 ctggctccgccttctcctcct 520 ||||||||||||||||||||| Sbjct: 21339233 ctggctccgccttctcctcct 21339253 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 463 ctgcttttcttctttgccctgcct 486 ||||||||||||| |||||||||| Sbjct: 2280381 ctgcttttcttctctgccctgcct 2280358
>dbj|AP003267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0496H05 Length = 147817 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 500 ctggctccgccttctcctcct 520 ||||||||||||||||||||| Sbjct: 61171 ctggctccgccttctcctcct 61191
>gb|AC079395.6| Homo sapiens BAC clone RP11-219H23 from 2, complete sequence Length = 82827 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 62 accactcaggcacactattta 82 ||||||||||||||||||||| Sbjct: 60897 accactcaggcacactattta 60877
>dbj|AK069494.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023025F12, full insert sequence Length = 1939 Score = 42.1 bits (21), Expect = 2.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 500 ctggctccgccttctcctcct 520 ||||||||||||||||||||| Sbjct: 945 ctggctccgccttctcctcct 925
>gb|U91516.1|RNU91516 Rattus norvegicus oxytocin receptor (OTR) gene, promoter region Length = 1540 Score = 42.1 bits (21), Expect = 2.4 Identities = 24/25 (96%) Strand = Plus / Minus Query: 446 cttccttgttctgcctcctgctttt 470 ||||||| ||||||||||||||||| Sbjct: 1251 cttcctttttctgcctcctgctttt 1227
>gb|AC119856.13| Mus musculus chromosome 5, clone RP23-256B18, complete sequence Length = 218174 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 50 tgaagttccaccaccactcaggca 73 ||||||||||||||||| |||||| Sbjct: 14694 tgaagttccaccaccacccaggca 14671
>gb|AC146939.2| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0064M09 map near S6115, complete sequence Length = 215240 Score = 40.1 bits (20), Expect = 9.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 408 aacgccaactgcaaacatgatggccttg 435 ||||||||||||||||| | |||||||| Sbjct: 72224 aacgccaactgcaaacaaggtggccttg 72251
>ref|XM_368314.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG00930.4) partial mRNA Length = 3615 Score = 40.1 bits (20), Expect = 9.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 496 tcttctggctccgccttctcctccttca 523 |||||| |||||| |||||||||||||| Sbjct: 926 tcttcttgctccgtcttctcctccttca 899
>gb|AC114342.12| Mus musculus chromosome 5, clone RP24-143H14, complete sequence Length = 171509 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 50 tgaagttccaccaccactcaggca 73 ||||||||||||||||| |||||| Sbjct: 130879 tgaagttccaccaccacccaggca 130856
>ref|XM_676230.1| Aspergillus nidulans FGSC A4 hypothetical protein (AN8053.2), mRNA Length = 3543 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 517 tccttcatcaccgtccaggg 536 |||||||||||||||||||| Sbjct: 2192 tccttcatcaccgtccaggg 2173
>gb|AC160248.6| Pan troglodytes BAC clone CH251-541A22 from chromosome unknown, complete sequence Length = 182426 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 490 cgctcctcttctggctccgccttc 513 ||||||||||||| |||||||||| Sbjct: 177288 cgctcctcttctgcctccgccttc 177265
>gb|AC122422.4| Mus musculus BAC clone RP24-169N11 from chromosome 17, complete sequence Length = 181626 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 509 ccttctcctccttcatcacc 528 |||||||||||||||||||| Sbjct: 96979 ccttctcctccttcatcacc 96960
>gb|AC117581.8| Mus musculus chromosome 3, clone RP23-105M18, complete sequence Length = 215747 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 450 cttgttctgcctcctgcttt 469 |||||||||||||||||||| Sbjct: 118758 cttgttctgcctcctgcttt 118739
>emb|AL513323.14| Human DNA sequence from clone RP11-550P17 on chromosome 1 Contains a pentraxin pseudogene, the OR10J2P olfactory receptor, family 10, subfamily J, member 2 pseudogene, the FCER1A gene for Fc fragment of IgE, high affinity I, receptor for; alpha polypeptide, the OR10J3 gene for olfactory receptor, family 10, subfamily J, member 3, the OR10J7P olfactory receptor, family 10, subfamily J, member 7 pseudogene, the OR10J8P olfactory receptor, family 10, subfamily J, member 8 pseudogene, the OR10J9P olfactory receptor, family 10, subfamily J, member 9 pseudogene and the 3' end of a novel gene, complete sequence Length = 168339 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 470 tcttctttgccctgcctttt 489 |||||||||||||||||||| Sbjct: 127280 tcttctttgccctgcctttt 127299
>emb|AL160056.16| Human DNA sequence from clone RP11-239F3 on chromosome 1, complete sequence Length = 169491 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 609 cattttcagccactgcttac 628 |||||||||||||||||||| Sbjct: 132575 cattttcagccactgcttac 132594
>gb|AC139135.5| Mus musculus chromosome 9, clone RP24-360E17, complete sequence Length = 161297 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 gactgattttgaagttccac 60 |||||||||||||||||||| Sbjct: 33119 gactgattttgaagttccac 33100
>emb|CR405706.7| Zebrafish DNA sequence from clone CH211-233D12 in linkage group 1, complete sequence Length = 181249 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 573 cagcctgagctggaggcatatgtt 596 ||||||||||||||||||| |||| Sbjct: 33859 cagcctgagctggaggcatctgtt 33882
>gb|AC158495.2| Capitella capitata clone JGIAUTO-1A8, complete sequence Length = 42314 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 182 tggtgtggatcgtggagaga 201 |||||||||||||||||||| Sbjct: 39663 tggtgtggatcgtggagaga 39644
>emb|AL732599.5| Mouse DNA sequence from clone RP24-312B5 on chromosome 4 Contains the 5' end of the Tnfsf8 gene for tumor necrosis factor (ligand) superfamily member 8 and a ribosomal protein L17 (Rpl17) pseudogene, complete sequence Length = 95217 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 gccagaaatacccatttctg 138 |||||||||||||||||||| Sbjct: 94715 gccagaaatacccatttctg 94696
>emb|AL954665.4| Mouse DNA sequence from clone RP23-252O15 on chromosome 4, complete sequence Length = 9584 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 gccagaaatacccatttctg 138 |||||||||||||||||||| Sbjct: 1498 gccagaaatacccatttctg 1479
>gb|AC078816.16| Homo sapiens 3 BAC RP11-600P18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 183861 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 445 ccttccttgttctgcctcctgctt 468 |||| ||||||||||||||||||| Sbjct: 104484 cctttcttgttctgcctcctgctt 104507
>gb|AC010045.5| Drosophila melanogaster 3L BAC RP98-17C17 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 179649 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 gtgccagaaatacccatttc 136 |||||||||||||||||||| Sbjct: 37838 gtgccagaaatacccatttc 37819
>gb|AC010059.6| Drosophila melanogaster 3L BAC RP98-17A14 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 171678 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 117 gtgccagaaatacccatttc 136 |||||||||||||||||||| Sbjct: 156115 gtgccagaaatacccatttc 156096
>gb|AC138065.25| Pan troglodytes clone rp43-11g4, complete sequence Length = 173247 Score = 40.1 bits (20), Expect = 9.3 Identities = 27/28 (96%), Gaps = 1/28 (3%) Strand = Plus / Plus Query: 612 tttcagccactgcttacacgcaaaggag 639 |||||||||||||||||| ||||||||| Sbjct: 91942 tttcagccactgcttaca-gcaaaggag 91968
>gb|AC007540.3| Homo sapiens 12q24.1 BAC RPCI11-128P10 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 174652 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 504 ctccgccttctcctccttcatcac 527 |||| ||||||||||||||||||| Sbjct: 157886 ctcctccttctcctccttcatcac 157863
>gb|AF456925.1|AF411849S2 Homo sapiens USH3 region, partial sequence Length = 8565 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 445 ccttccttgttctgcctcctgctt 468 |||| ||||||||||||||||||| Sbjct: 5132 cctttcttgttctgcctcctgctt 5155
>gb|AC093600.3| Homo sapiens BAC clone RP11-333E5 from 4, complete sequence Length = 165536 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 461 tcctgcttttcttctttgccctgc 484 ||||||||||||| |||||||||| Sbjct: 154026 tcctgcttttcttatttgccctgc 154049
>ref|XM_393489.2| PREDICTED: Apis mellifera similar to Regulating synaptic membrane exocytosis protein 2 (Rab3-interacting molecule 2) (RIM 2) (LOC410001), mRNA Length = 6093 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 539 gctccgggaacatggctgctatct 562 ||||| |||||||||||||||||| Sbjct: 6046 gctccaggaacatggctgctatct 6023
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 cctcctgcttttcttctttg 478 |||||||||||||||||||| Sbjct: 2680398 cctcctgcttttcttctttg 2680417
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 9.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 408 aacgccaactgcaaacatgatggccttg 435 ||||||||||||||||| | |||||||| Sbjct: 12689548 aacgccaactgcaaacaaggtggccttg 12689575
>gb|AC069019.8|AC069019 Mus musculus BAC RP23-455N13 (Roswell Park Cancer Institute Mouse BAC Library) complete sequence Length = 196175 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 catgaagcagatatctggag 298 |||||||||||||||||||| Sbjct: 16350 catgaagcagatatctggag 16369
>gb|AC002978.1| Homo sapiens 12 PAC P336P3 (Research Park Cancer Institute Human Genome PAC library) complete sequence Length = 102591 Score = 40.1 bits (20), Expect = 9.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 445 ccttccttgttctgcctcctgcttttct 472 |||| ||||||||||||||||| ||||| Sbjct: 94364 ccttgcttgttctgcctcctgcgtttct 94337
>dbj|AP003311.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0024G09 Length = 175565 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 463 ctgcttttcttctttgccctgcct 486 ||||||||||||| |||||||||| Sbjct: 9431 ctgcttttcttctctgccctgcct 9408
>dbj|AP002483.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0019D06 Length = 167405 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 463 ctgcttttcttctttgccctgcct 486 ||||||||||||| |||||||||| Sbjct: 63965 ctgcttttcttctctgccctgcct 63942
>emb|BX000461.4| Zebrafish DNA sequence from clone DKEY-170E5, complete sequence Length = 170304 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 573 cagcctgagctggaggcatatgtt 596 ||||||||||||||||||| |||| Sbjct: 83291 cagcctgagctggaggcatctgtt 83314
>emb|BX640480.22| Zebrafish DNA sequence from clone DKEYP-86F2 in linkage group 18, complete sequence Length = 186258 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 600 cagctgcagcattttcagccactg 623 |||||||||||||||||| ||||| Sbjct: 181110 cagctgcagcattttcagacactg 181087
>emb|CR318588.10| Zebrafish DNA sequence from clone DKEYP-1H4 in linkage group 18, complete sequence Length = 179350 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 600 cagctgcagcattttcagccactg 623 |||||||||||||||||| ||||| Sbjct: 113194 cagctgcagcattttcagacactg 113217
>emb|AL160236.4|CNS01RH0 Human chromosome 14 DNA sequence BAC R-193F5 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 192401 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 78 atttacaccttcaacccatc 97 |||||||||||||||||||| Sbjct: 38860 atttacaccttcaacccatc 38841
>gb|AE003522.3| Drosophila melanogaster chromosome 3L, section 63 of 83 of the complete sequence Length = 302050 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 117 gtgccagaaatacccatttc 136 |||||||||||||||||||| Sbjct: 166620 gtgccagaaatacccatttc 166639
>dbj|AB053170.3| Homo sapiens genomic DNA, chromosome 4p15.3, BAC clone:395N09, containing QDPR gene for dihydropteridine reductase, complete cds Length = 128800 Score = 40.1 bits (20), Expect = 9.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 461 tcctgcttttcttctttgccctgc 484 ||||||||||||| |||||||||| Sbjct: 26041 tcctgcttttcttatttgccctgc 26018
>gb|AC118222.8| Mus musculus chromosome 13, clone RP23-277M5, complete sequence Length = 175089 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 466 cttttcttctttgccctgcc 485 |||||||||||||||||||| Sbjct: 91029 cttttcttctttgccctgcc 91048
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 9.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 408 aacgccaactgcaaacatgatggccttg 435 ||||||||||||||||| | |||||||| Sbjct: 12768855 aacgccaactgcaaacaaggtggccttg 12768882
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 cctcctgcttttcttctttg 478 |||||||||||||||||||| Sbjct: 2680342 cctcctgcttttcttctttg 2680361
>emb|BX119318.5| Human DNA sequence from clone DASS-49J3 on chromosome 6, complete sequence Length = 134747 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 tcttctttgccctgcctttt 489 |||||||||||||||||||| Sbjct: 7581 tcttctttgccctgcctttt 7562
>gb|AC114604.10| Mus musculus chromosome 9, clone RP23-367L9, complete sequence Length = 195888 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 41 gactgattttgaagttccac 60 |||||||||||||||||||| Sbjct: 121774 gactgattttgaagttccac 121793
>emb|AL954632.3|CNS08CD0 Oryza sativa chromosome 12, . BAC OSJNBa0031E02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 151878 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 459 cctcctgcttttcttctttg 478 |||||||||||||||||||| Sbjct: 49324 cctcctgcttttcttctttg 49343
>emb|AL844564.14| Mouse DNA sequence from clone RP23-400D4 on chromosome 11, complete sequence Length = 196136 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 279 catgaagcagatatctggag 298 |||||||||||||||||||| Sbjct: 17932 catgaagcagatatctggag 17913
>emb|AL807386.14| Mouse DNA sequence from clone RP23-190K7 on chromosome 2, complete sequence Length = 183076 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 446 cttccttgttctgcctcctg 465 |||||||||||||||||||| Sbjct: 43817 cttccttgttctgcctcctg 43798
>dbj|AP002535.1| Homo sapiens genomic DNA, chromosome 1q22-q23, CD1 region, section 4/4 Length = 239684 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 tcttctttgccctgcctttt 489 |||||||||||||||||||| Sbjct: 209414 tcttctttgccctgcctttt 209395
>dbj|AB045365.1| Homo sapiens genomic DNA, chromosome 1q22-q23, clone:622b6, complete sequence Length = 126549 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 tcttctttgccctgcctttt 489 |||||||||||||||||||| Sbjct: 96279 tcttctttgccctgcctttt 96260
>dbj|AB059236.1| Homo sapiens gene for Fc epsilon RI alpha-chain, partial cds Length = 20618 Score = 40.1 bits (20), Expect = 9.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 470 tcttctttgccctgcctttt 489 |||||||||||||||||||| Sbjct: 4707 tcttctttgccctgcctttt 4688 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,417,496 Number of Sequences: 3902068 Number of extensions: 7417496 Number of successful extensions: 146801 Number of sequences better than 10.0: 77 Number of HSP's better than 10.0 without gapping: 77 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 146238 Number of HSP's gapped (non-prelim): 550 length of query: 681 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 658 effective length of database: 17,143,297,704 effective search space: 11280289889232 effective search space used: 11280289889232 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)