ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27o21 |
|---|---|
| Clone Library Name | barley_pub |
>IF34_MOUSE (Q9Z1D1) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (Eif3p42) (eIF3g) Length = 320 Score = 120 bits (300), Expect = 3e-27 Identities = 60/107 (56%), Positives = 78/107 (72%), Gaps = 1/107 (0%) Frame = -3 Query: 526 GSYVAPRLRAGAVHTDAGHDMRRRNDENS-VRVTNLSEDTREPDLLELFRTFGAVSRVYV 350 G YV P LR GA RR D+N+ +RVTNLSEDTRE DL ELFR FG++SR+Y+ Sbjct: 211 GKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYL 270 Query: 349 AVDQKTGMSRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMAAP 209 A D+ TG S+GF F++F REDA +AI+ ++G+GYD+LIL+VE A P Sbjct: 271 AKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP 317
>IF34_HUMAN (O75821) Eukaryotic translation initiation factor 3 subunit 4| (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3 p42) (eIF3g) Length = 320 Score = 120 bits (300), Expect = 3e-27 Identities = 60/107 (56%), Positives = 78/107 (72%), Gaps = 1/107 (0%) Frame = -3 Query: 526 GSYVAPRLRAGAVHTDAGHDMRRRNDENS-VRVTNLSEDTREPDLLELFRTFGAVSRVYV 350 G YV P LR GA RR D+N+ +RVTNLSEDTRE DL ELFR FG++SR+Y+ Sbjct: 211 GKYVPPSLRDGASRRGESMQPNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYL 270 Query: 349 AVDQKTGMSRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMAAP 209 A D+ TG S+GF F++F REDA +AI+ ++G+GYD+LIL+VE A P Sbjct: 271 AKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKP 317
>IF34_SCHPO (P78795) Probable eukaryotic translation initiation factor 3| RNA-binding subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 282 Score = 110 bits (276), Expect = 2e-24 Identities = 56/110 (50%), Positives = 80/110 (72%), Gaps = 2/110 (1%) Frame = -3 Query: 529 KGSYVAPRLRAGAVHTDAGHDM--RRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRV 356 KG Y+AP LRAG+ ++G M R R+D ++RVTNLS+DTRE +L +LFR FG + RV Sbjct: 173 KGRYIAPHLRAGSGR-ESGDSMFKRERDDSATLRVTNLSDDTREEELRDLFRRFGGIQRV 231 Query: 355 YVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMAAPR 206 Y+A D++TG ++GF FV++ R+ A KA +L+GYG++NLIL E + PR Sbjct: 232 YLAKDKETGRAKGFAFVSYYDRDCAIKARDRLDGYGWNNLILRCEFSKPR 281
>IF34_CAEEL (Q19706) Probable eukaryotic translation initiation factor 3| subunit 4 (eIF-3 delta) (eIF3 p44) (eIF-3 RNA-binding subunit) (eIF3g) Length = 256 Score = 77.8 bits (190), Expect = 2e-14 Identities = 37/85 (43%), Positives = 56/85 (65%) Frame = -3 Query: 463 RRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHRED 284 R R+DEN+ RVTNL ++ E +L +LF G V R+++A D+ TG+ +GF FV F R+D Sbjct: 170 RNRSDENTCRVTNLPQEMNEDELRDLFGKIGRVIRIFIARDKVTGLPKGFAFVTFESRDD 229 Query: 283 AEKAISKLNGYGYDNLILHVEMAAP 209 A +AI++LN +++L VE P Sbjct: 230 AARAIAELNDIRMYHMVLKVEWTRP 254
>IF34_YEAST (Q04067) Eukaryotic translation initiation factor 3 RNA-binding| subunit (eIF-3 RNA-binding subunit) (eIF3 p33) (Translation initiation factor eIF3, p33 subunit) Length = 274 Score = 75.9 bits (185), Expect = 7e-14 Identities = 47/114 (41%), Positives = 65/114 (57%), Gaps = 3/114 (2%) Frame = -3 Query: 538 GPAKGSYVAPRLRAGA--VHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLE-LFRTFGA 368 G G YV P RAGA +DA D R R+D ++++ ++E+ E L E L F Sbjct: 158 GSIPGQYVPPSRRAGARDPSSDAYRDSRERDDMCTLKIMQVNENADENSLREELLFPFAP 217 Query: 367 VSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMAAPR 206 + RV V +++TG SRG FV F E AE+A+ L+G GY NLIL VE + P+ Sbjct: 218 IPRVSVVRNKETGKSRGLAFVTFSSEEVAEQALRFLDGRGYMNLILRVEWSKPK 271
>CIRBP_PONPY (Q5RF83) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) Length = 172 Score = 61.6 bits (148), Expect = 1e-09 Identities = 32/80 (40%), Positives = 47/80 (58%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 +DE + V LS DT E L ++F +G +S V V D++T SRGFGFV F + +DA+ Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62 Query: 274 AISKLNGYGYDNLILHVEMA 215 A+ +NG D + V+ A Sbjct: 63 AMMAMNGKSVDGRQIRVDQA 82
>CIRBP_HUMAN (Q14011) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 61.6 bits (148), Expect = 1e-09 Identities = 32/80 (40%), Positives = 47/80 (58%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 +DE + V LS DT E L ++F +G +S V V D++T SRGFGFV F + +DA+ Sbjct: 3 SDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62 Query: 274 AISKLNGYGYDNLILHVEMA 215 A+ +NG D + V+ A Sbjct: 63 AMMAMNGKSVDGRQIRVDQA 82
>SXL_CHRRU (O97018) Sex-lethal homolog| Length = 307 Score = 61.2 bits (147), Expect = 2e-09 Identities = 42/115 (36%), Positives = 58/115 (50%), Gaps = 4/115 (3%) Frame = -3 Query: 541 GGPAKGSY--VAPRLRAGAVHTDAGH--DMRRRNDENSVRVTNLSEDTREPDLLELFRTF 374 GG A GS +AP + +V++ G D + N N + V L +D + +L LFRT Sbjct: 50 GGSAMGSMCNMAPAISTNSVNSGGGDCGDNQGCNGTNLI-VNYLPQDMTDRELYALFRTC 108 Query: 373 GAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMAAP 209 G ++ + D KTG S G+ FV+F DA+ AI LNG N L V A P Sbjct: 109 GPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYARP 163 Score = 45.8 bits (107), Expect = 8e-05 Identities = 23/64 (35%), Positives = 38/64 (59%) Frame = -3 Query: 448 ENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI 269 + ++ VTNL + +L ++F +G + + + D+ TG RG FV F RE+A++AI Sbjct: 170 DTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAI 229 Query: 268 SKLN 257 S LN Sbjct: 230 SALN 233
>CIRBP_RAT (P60825) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 60.8 bits (146), Expect = 2e-09 Identities = 32/80 (40%), Positives = 47/80 (58%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 +DE + V LS DT E L ++F +G +S V V D++T SRGFGFV F + +DA+ Sbjct: 3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62 Query: 274 AISKLNGYGYDNLILHVEMA 215 A+ +NG D + V+ A Sbjct: 63 AMMAMNGKSVDGRQIRVDQA 82
>CIRBP_MOUSE (P60824) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 60.8 bits (146), Expect = 2e-09 Identities = 32/80 (40%), Positives = 47/80 (58%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 +DE + V LS DT E L ++F +G +S V V D++T SRGFGFV F + +DA+ Sbjct: 3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62 Query: 274 AISKLNGYGYDNLILHVEMA 215 A+ +NG D + V+ A Sbjct: 63 AMMAMNGKSVDGRQIRVDQA 82
>CIRBP_CRIGR (P60826) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (A18 hnRNP) Length = 172 Score = 60.8 bits (146), Expect = 2e-09 Identities = 32/80 (40%), Positives = 47/80 (58%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 +DE + V LS DT E L ++F +G +S V V D++T SRGFGFV F + +DA+ Sbjct: 3 SDEGKLFVGGLSFDTNEQALEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKD 62 Query: 274 AISKLNGYGYDNLILHVEMA 215 A+ +NG D + V+ A Sbjct: 63 AMMAMNGKSVDGRQIRVDQA 82
>EPAB_XENTR (Q6DEY7) Embryonic polyadenylate-binding protein (Embryonic poly(A)| binding protein) (ePABP) Length = 629 Score = 60.5 bits (145), Expect = 3e-09 Identities = 37/100 (37%), Positives = 53/100 (53%), Gaps = 10/100 (10%) Frame = -3 Query: 475 GHDMRRRNDE----------NSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGM 326 GH RR E +V + N ED + L E+F FG V V +D TG Sbjct: 171 GHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-TGR 229 Query: 325 SRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMAAPR 206 SRGFGFVN+ + E+A+KA+S++NG + +++V A R Sbjct: 230 SRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269 Score = 42.0 bits (97), Expect = 0.001 Identities = 24/69 (34%), Positives = 36/69 (52%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 R++ +V + NL E L + F FG + V D+ SRG+GFV+F +E A Sbjct: 94 RKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETQEAA 151 Query: 280 EKAISKLNG 254 +AI +NG Sbjct: 152 NRAIQTMNG 160 Score = 39.7 bits (91), Expect = 0.006 Identities = 24/73 (32%), Positives = 39/73 (53%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NL + + L + F +G ++ V + G S+GFGFV F E+A KA++++NG Sbjct: 298 VKNLDDGIDDDRLRKEFSPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNG 355 Query: 253 YGYDNLILHVEMA 215 L+V +A Sbjct: 356 RIVSTKPLYVALA 368 Score = 38.5 bits (88), Expect = 0.013 Identities = 21/62 (33%), Positives = 31/62 (50%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 S+ V +L D E L E F G + + V D T S G+ ++NF DAE+A+ Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71 Query: 262 LN 257 +N Sbjct: 72 MN 73
>EPABA_XENLA (Q98SP8) Embryonic polyadenylate-binding protein-A (Embryonic| poly(A) binding protein-A) (ePABP-A) (ePAB-A) (XePABP-A) Length = 629 Score = 58.9 bits (141), Expect = 9e-09 Identities = 36/100 (36%), Positives = 53/100 (53%), Gaps = 10/100 (10%) Frame = -3 Query: 475 GHDMRRRNDE----------NSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGM 326 GH RR E +V + N ED + L E+F FG V V +D +G Sbjct: 171 GHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDD-SGR 229 Query: 325 SRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMAAPR 206 SRGFGFVN+ + E+A+KA+S++NG + +++V A R Sbjct: 230 SRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKR 269 Score = 41.6 bits (96), Expect = 0.002 Identities = 24/69 (34%), Positives = 35/69 (50%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 R++ +V + NL E L + F FG + V D+ SRG+GFV+F E A Sbjct: 94 RKSGVGNVFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHG--SRGYGFVHFETHEAA 151 Query: 280 EKAISKLNG 254 +AI +NG Sbjct: 152 NRAIQTMNG 160 Score = 39.3 bits (90), Expect = 0.007 Identities = 24/73 (32%), Positives = 39/73 (53%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NL + + L + F +G ++ V + G S+GFGFV F E+A KA++++NG Sbjct: 298 VKNLDDGIDDDRLRKEFLPYGTITSAKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNG 355 Query: 253 YGYDNLILHVEMA 215 L+V +A Sbjct: 356 RIVSTKPLYVALA 368 Score = 35.8 bits (81), Expect = 0.083 Identities = 19/62 (30%), Positives = 30/62 (48%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 S+ + +L D E L E F G + + V D T S + ++NF DAE+A+ Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71 Query: 262 LN 257 +N Sbjct: 72 MN 73
>MRD1_CANAL (Q5AJS6) Multiple RNA-binding domain-containing protein 1| Length = 841 Score = 58.2 bits (139), Expect = 2e-08 Identities = 25/70 (35%), Positives = 43/70 (61%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 + N+S + E D LF +GA+ V++A+D +TG S+GF +V F+ +EDA +A L+ Sbjct: 314 IRNISYEASEEDFRSLFSQYGALEEVHIAIDTRTGKSKGFLYVQFLKKEDATRAYRSLDK 373 Query: 253 YGYDNLILHV 224 + +LH+ Sbjct: 374 QIFQGRLLHI 383 Score = 41.6 bits (96), Expect = 0.002 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%) Frame = -3 Query: 466 MRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVA--VDQKTGMSRGFGFVNFVH 293 +++ + + + NL + DLLELF FG + V V DQ +RGF FV F Sbjct: 710 IKKSGKSSKIIIKNLPFEATRKDLLELFGAFGQLKSVRVPKKFDQS---ARGFAFVEFNL 766 Query: 292 REDAEKAISKLNG 254 ++AE A+S+L G Sbjct: 767 MKEAETAMSQLEG 779 Score = 36.2 bits (82), Expect = 0.063 Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 5/86 (5%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGA--VSRVYVAVDQKTG---MSRGFGFVNFVHREDAE 278 +V V NL+ T L +LF+ V+ V D K +S GFGFV F +E A Sbjct: 618 AVFVKNLNFATTVQALSDLFKPLPGFVVATVKTKPDPKNSGKTLSMGFGFVEFRTKEQAN 677 Query: 277 KAISKLNGYGYDNLILHVEMAAPRPT 200 AIS L+G+ D L ++++ + T Sbjct: 678 VAISTLDGHVLDGHKLQLKLSHKQGT 703
>PABP2_ARATH (P42731) Polyadenylate-binding protein 2 (Poly(A)-binding protein| 2) (PABP 2) Length = 629 Score = 58.2 bits (139), Expect = 2e-08 Identities = 35/97 (36%), Positives = 52/97 (53%) Frame = -3 Query: 529 KGSYVAPRLRAGAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYV 350 K YV P LR + A + +V V NL+E T + DL F +G ++ V Sbjct: 192 KQVYVGPFLRRQERDSTAN-----KTKFTNVYVKNLAESTTDDDLKNAFGEYGKITSAVV 246 Query: 349 AVDQKTGMSRGFGFVNFVHREDAEKAISKLNGYGYDN 239 D + G S+GFGFVNF + +DA +A+ LNG+ +D+ Sbjct: 247 MKDGE-GKSKGFGFVNFENADDAARAVESLNGHKFDD 282 Score = 54.3 bits (129), Expect = 2e-07 Identities = 28/69 (40%), Positives = 41/69 (59%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 RR+ ++ + NL E L + F +FG + VAVD +G S+G+GFV + + E A Sbjct: 119 RRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDS-SGQSKGYGFVQYANEESA 177 Query: 280 EKAISKLNG 254 +KAI KLNG Sbjct: 178 QKAIEKLNG 186 Score = 44.7 bits (104), Expect = 2e-04 Identities = 29/86 (33%), Positives = 41/86 (47%) Frame = -3 Query: 514 APRLRAGAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQK 335 AP GA T G+ S+ V +L + + L + F G V V V D Sbjct: 21 APATSGGATATQFGN--------TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLV 72 Query: 334 TGMSRGFGFVNFVHREDAEKAISKLN 257 T S G+G+VNF + +DA +AI +LN Sbjct: 73 TRRSLGYGYVNFTNPQDAARAIQELN 98 Score = 42.4 bits (98), Expect = 9e-04 Identities = 27/77 (35%), Positives = 43/77 (55%) Frame = -3 Query: 445 NSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAIS 266 +++ V NL + L E+F FG V+ V D G S+G GFV F E+A +A+S Sbjct: 318 SNLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPN-GTSKGSGFVAFATPEEATEAMS 376 Query: 265 KLNGYGYDNLILHVEMA 215 +L+G ++ L+V +A Sbjct: 377 QLSGKMIESKPLYVAIA 393
>SXL_MEGSC (O01671) Sex-lethal homolog| Length = 321 Score = 57.8 bits (138), Expect = 2e-08 Identities = 31/82 (37%), Positives = 45/82 (54%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 N ++ V L +D ++ +L LFRT G ++ + D KTG S G+GFV+F DA + Sbjct: 75 NSGTNLIVNYLPQDMQDRELYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALR 134 Query: 274 AISKLNGYGYDNLILHVEMAAP 209 AI+ LNG N + V A P Sbjct: 135 AINNLNGITVRNKRIKVSFARP 156 Score = 47.0 bits (110), Expect = 4e-05 Identities = 23/64 (35%), Positives = 37/64 (57%) Frame = -3 Query: 448 ENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI 269 + ++ VTNLS + L +F +G + + + D+ TG RG F+ F RE+A++AI Sbjct: 163 DTNLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAI 222 Query: 268 SKLN 257 S LN Sbjct: 223 SALN 226
>EPABB_XENLA (Q6GR16) Embryonic polyadenylate-binding protein-B (Embryonic| poly(A) binding protein-B) (ePABP-B) (ePAB-B) (XePABP-B) Length = 629 Score = 57.4 bits (137), Expect = 3e-08 Identities = 35/100 (35%), Positives = 53/100 (53%), Gaps = 10/100 (10%) Frame = -3 Query: 475 GHDMRRRNDE----------NSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGM 326 GH RR E +V + N ED + L E+F FG V V +D +G Sbjct: 171 GHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDN-SGR 229 Query: 325 SRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMAAPR 206 SRGFGFVN+ + E+A+KA++++NG + +++V A R Sbjct: 230 SRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKR 269 Score = 40.4 bits (93), Expect = 0.003 Identities = 23/69 (33%), Positives = 36/69 (52%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 R++ +V + NL + L + F FG + V D+ SRG+GFV+F +E A Sbjct: 94 RKSGVGNVFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYG--SRGYGFVHFETQEAA 151 Query: 280 EKAISKLNG 254 +AI +NG Sbjct: 152 NRAIQTMNG 160 Score = 39.7 bits (91), Expect = 0.006 Identities = 24/73 (32%), Positives = 39/73 (53%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NL + + L + F +G ++ V + G S+GFGFV F E+A KA++++NG Sbjct: 298 VKNLDDGIDDDRLRKEFSPYGTITSTKVMTEG--GHSKGFGFVCFSSPEEATKAVTEMNG 355 Query: 253 YGYDNLILHVEMA 215 L+V +A Sbjct: 356 RIVSTKPLYVALA 368 Score = 38.1 bits (87), Expect = 0.017 Identities = 20/62 (32%), Positives = 31/62 (50%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 S+ + +L D E L E F G + + V D T S G+ ++NF DAE+A+ Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71 Query: 262 LN 257 +N Sbjct: 72 MN 73
>ROC1_SPIOL (P28644) 28 kDa ribonucleoprotein, chloroplast (28RNP)| Length = 233 Score = 57.4 bits (137), Expect = 3e-08 Identities = 35/92 (38%), Positives = 44/92 (47%) Frame = -3 Query: 481 DAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVN 302 + G +E + V NL D L +F G V V +++T SRGFGFV Sbjct: 43 EGGQGFSEPPEEAKLFVGNLPYDVDSEKLAGIFDAAGVVEIAEVIYNRETDRSRGFGFVT 102 Query: 301 FVHREDAEKAISKLNGYGYDNLILHVEMAAPR 206 E+AEKA+ LNGY D L V AAPR Sbjct: 103 MSTVEEAEKAVELLNGYDMDGRQLTVNKAAPR 134 Score = 49.7 bits (117), Expect = 6e-06 Identities = 30/79 (37%), Positives = 38/79 (48%) Frame = -3 Query: 439 VRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKL 260 V V NL D L +LF G V V D++TG SRGFGFV + AI+ L Sbjct: 151 VYVGNLPWDVDTSRLEQLFSEHGKVVSARVVSDRETGRSRGFGFVTMSSESEVNDAIAAL 210 Query: 259 NGYGYDNLILHVEMAAPRP 203 +G D + V +A RP Sbjct: 211 DGQTLDGRAVRVNVAEERP 229
>SXL_MUSDO (O17310) Sex-lethal homolog| Length = 324 Score = 57.0 bits (136), Expect = 3e-08 Identities = 40/116 (34%), Positives = 57/116 (49%), Gaps = 5/116 (4%) Frame = -3 Query: 541 GGPAKGSY--VAPRLRAGAVHTDA---GHDMRRRNDENSVRVTNLSEDTREPDLLELFRT 377 GG A GS +AP ++++ G D + N N + V L +D + +L LFRT Sbjct: 66 GGSAMGSMCNMAPAQSTNSLNSGGDGGGGDTQAVNGTNLI-VNYLPQDMTDRELYALFRT 124 Query: 376 FGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMAAP 209 G ++ + D KTG S G+ FV+F DA+ AI +NG N L V A P Sbjct: 125 CGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNGITVRNKRLKVSYARP 180 Score = 45.8 bits (107), Expect = 8e-05 Identities = 23/64 (35%), Positives = 38/64 (59%) Frame = -3 Query: 448 ENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI 269 + ++ VTNL + +L ++F +G + + + D+ TG RG FV F RE+A++AI Sbjct: 187 DTNLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAI 246 Query: 268 SKLN 257 S LN Sbjct: 247 SALN 250
>CIRBP_XENLA (O93235) Cold-inducible RNA-binding protein (Glycine-rich| RNA-binding protein CIRP) (xCIRP) Length = 163 Score = 56.6 bits (135), Expect = 5e-08 Identities = 29/80 (36%), Positives = 46/80 (57%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 +DE + + L+ +T E L + F +G +S V V D++T SRGFGFV F + +DA+ Sbjct: 2 SDEGKLFIGGLNFETNEDCLEQAFTKYGRISEVVVVKDRETKRSRGFGFVTFENVDDAKD 61 Query: 274 AISKLNGYGYDNLILHVEMA 215 A+ +NG D + V+ A Sbjct: 62 AMMAMNGKSVDGRQIRVDQA 81
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 56.6 bits (135), Expect = 5e-08 Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Frame = -3 Query: 475 GHDMRRRNDEN---SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFV 305 G D R D N S+++ NLS T DL F +G + V++ D+ + S+GFGFV Sbjct: 6 GGDRRAAPDINGLTSLKIDNLSYQTTPNDLRRTFERYGDIGDVHIPRDKYSRQSKGFGFV 65 Query: 304 NFVHREDAEKAISKLNGYGYDNLILHVEMA 215 F R DAE A+ + +G D L V +A Sbjct: 66 RFYERRDAEHALDRTDGKLVDGRELRVTLA 95
>ELAV4_MOUSE (Q61701) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 385 Score = 56.2 bits (134), Expect = 6e-08 Identities = 31/70 (44%), Positives = 41/70 (58%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NLS D+ E L +LF FGAV+ V V D T +GFGFV + ++A AI+ LNG Sbjct: 306 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 365 Query: 253 YGYDNLILHV 224 Y + +L V Sbjct: 366 YRLGDRVLQV 375 Score = 51.6 bits (122), Expect = 1e-06 Identities = 26/82 (31%), Positives = 44/82 (53%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 + + ++ V L ++ + + LF + G + + D+ TG S G+GFVN++ +DAEK Sbjct: 48 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 107 Query: 274 AISKLNGYGYDNLILHVEMAAP 209 AI+ LNG + V A P Sbjct: 108 AINTLNGLRLQTKTIKVSYARP 129 Score = 50.1 bits (118), Expect = 4e-06 Identities = 25/60 (41%), Positives = 37/60 (61%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V+ L + + +L +LF +G + + VDQ TG+SRG GF+ F R +AE+AI LNG Sbjct: 141 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 200
>ELAV_DROME (P16914) Protein elav (Embryonic lethal abnormal visual protein)| Length = 483 Score = 56.2 bits (134), Expect = 6e-08 Identities = 28/70 (40%), Positives = 40/70 (57%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 + NL+ +T E L +LF FGAV V + D T +G+GFV+ + ++A AI LNG Sbjct: 406 IYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNG 465 Query: 253 YGYDNLILHV 224 Y N +L V Sbjct: 466 YTMGNRVLQV 475 Score = 45.1 bits (105), Expect = 1e-04 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 13/88 (14%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKT-------------GMSRGFGFVNFVH 293 V L + E ++ LF + G + V + D+ G S G+GFVN+V Sbjct: 153 VNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVR 212 Query: 292 REDAEKAISKLNGYGYDNLILHVEMAAP 209 +DAE+A++ LNG N + V A P Sbjct: 213 PQDAEQAVNVLNGLRLQNKTIKVSFARP 240 Score = 36.2 bits (82), Expect = 0.063 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAV--SRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKL 260 V+ L + + +L +F FGA+ SR+ T ++G GF+ F RE+A +AI L Sbjct: 252 VSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDT-QTKGVGFIRFDKREEATRAIIAL 310 Query: 259 NG 254 NG Sbjct: 311 NG 312
>ELAV4_HUMAN (P26378) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 380 Score = 56.2 bits (134), Expect = 6e-08 Identities = 31/70 (44%), Positives = 41/70 (58%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NLS D+ E L +LF FGAV+ V V D T +GFGFV + ++A AI+ LNG Sbjct: 301 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 360 Query: 253 YGYDNLILHV 224 Y + +L V Sbjct: 361 YRLGDRVLQV 370 Score = 51.6 bits (122), Expect = 1e-06 Identities = 26/82 (31%), Positives = 44/82 (53%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 + + ++ V L ++ + + LF + G + + D+ TG S G+GFVN++ +DAEK Sbjct: 43 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 102 Query: 274 AISKLNGYGYDNLILHVEMAAP 209 AI+ LNG + V A P Sbjct: 103 AINTLNGLRLQTKTIKVSYARP 124 Score = 50.1 bits (118), Expect = 4e-06 Identities = 25/60 (41%), Positives = 37/60 (61%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V+ L + + +L +LF +G + + VDQ TG+SRG GF+ F R +AE+AI LNG Sbjct: 136 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 195
>ELAV_DROVI (P23241) Protein elav (Embryonic lethal abnormal visual protein)| Length = 519 Score = 56.2 bits (134), Expect = 6e-08 Identities = 28/70 (40%), Positives = 40/70 (57%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 + NL+ +T E L +LF FGAV V + D T +G+GFV+ + ++A AI LNG Sbjct: 442 IYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRALNG 501 Query: 253 YGYDNLILHV 224 Y N +L V Sbjct: 502 YTMGNRVLQV 511 Score = 45.1 bits (105), Expect = 1e-04 Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 13/88 (14%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKT-------------GMSRGFGFVNFVH 293 V L + E ++ LF + G + V + D+ G S G+GFVN+V Sbjct: 189 VNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFVNYVR 248 Query: 292 REDAEKAISKLNGYGYDNLILHVEMAAP 209 +DAE+A++ LNG N + V A P Sbjct: 249 PQDAEQAVNVLNGLRLQNKTIKVSFARP 276 Score = 36.2 bits (82), Expect = 0.063 Identities = 22/62 (35%), Positives = 34/62 (54%), Gaps = 2/62 (3%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAV--SRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKL 260 V+ L + + +L +F FGA+ SR+ T ++G GF+ F RE+A +AI L Sbjct: 288 VSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDT-QTKGVGFIRFDKREEATRAIIAL 346 Query: 259 NG 254 NG Sbjct: 347 NG 348
>ELAV4_RAT (O09032) ELAV-like protein 4 (Paraneoplastic encephalomyelitis| antigen HuD) (Hu-antigen D) Length = 373 Score = 56.2 bits (134), Expect = 6e-08 Identities = 31/70 (44%), Positives = 41/70 (58%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NLS D+ E L +LF FGAV+ V V D T +GFGFV + ++A AI+ LNG Sbjct: 294 VYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 353 Query: 253 YGYDNLILHV 224 Y + +L V Sbjct: 354 YRLGDRVLQV 363 Score = 51.6 bits (122), Expect = 1e-06 Identities = 26/82 (31%), Positives = 44/82 (53%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 + + ++ V L ++ + + LF + G + + D+ TG S G+GFVN++ +DAEK Sbjct: 36 DSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 95 Query: 274 AISKLNGYGYDNLILHVEMAAP 209 AI+ LNG + V A P Sbjct: 96 AINTLNGLRLQTKTIKVSYARP 117 Score = 50.1 bits (118), Expect = 4e-06 Identities = 25/60 (41%), Positives = 37/60 (61%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V+ L + + +L +LF +G + + VDQ TG+SRG GF+ F R +AE+AI LNG Sbjct: 129 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188
>RBPA_SYNY3 (Q57014) Putative RNA-binding protein rbpA| Length = 101 Score = 56.2 bits (134), Expect = 6e-08 Identities = 32/79 (40%), Positives = 42/79 (53%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 S+ V NLS D E DL +F +G+V RV + D++TG RGFGFV + AI Sbjct: 2 SIYVGNLSYDVSEADLTAVFAEYGSVKRVQLPTDRETGRMRGFGFVELEADAEETAAIEA 61 Query: 262 LNGYGYDNLILHVEMAAPR 206 L+G + L V A PR Sbjct: 62 LDGAEWMGRDLKVNKAKPR 80
>TRA2A_MOUSE (Q6PFR5) Transformer-2 protein homolog (TRA-2 alpha)| Length = 281 Score = 55.8 bits (133), Expect = 8e-08 Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 1/82 (1%) Frame = -3 Query: 463 RRRNDENS-VRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHRE 287 R D N+ + V LS T E DL E+F +G +S V V DQ+TG SRGF FV F + Sbjct: 110 RANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERID 169 Query: 286 DAEKAISKLNGYGYDNLILHVE 221 D+++A+ + NG D + V+ Sbjct: 170 DSKEAMERANGMELDGRRIRVD 191
>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)| Length = 282 Score = 55.8 bits (133), Expect = 8e-08 Identities = 33/82 (40%), Positives = 47/82 (57%), Gaps = 1/82 (1%) Frame = -3 Query: 463 RRRNDENS-VRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHRE 287 R D N+ + V LS T E DL E+F +G +S V V DQ+TG SRGF FV F + Sbjct: 112 RANPDPNTCLGVFGLSLYTTERDLREVFSRYGPLSGVNVVYDQRTGRSRGFAFVYFERID 171 Query: 286 DAEKAISKLNGYGYDNLILHVE 221 D+++A+ + NG D + V+ Sbjct: 172 DSKEAMERANGMELDGRRIRVD 193
>PABP1_RAT (Q9EPH8) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 55.8 bits (133), Expect = 8e-08 Identities = 29/69 (42%), Positives = 41/69 (59%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 R + +V + N ED + L ELF FG V V D+ +G S+GFGFV+F EDA Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDA 244 Query: 280 EKAISKLNG 254 +KA+ ++NG Sbjct: 245 QKAVDEMNG 253 Score = 43.5 bits (101), Expect = 4e-04 Identities = 23/69 (33%), Positives = 38/69 (55%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 R++ ++ + NL + L + F FG + V D+ S+G+GFV+F +E A Sbjct: 94 RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAA 151 Query: 280 EKAISKLNG 254 E+AI K+NG Sbjct: 152 ERAIEKMNG 160 Score = 40.8 bits (94), Expect = 0.003 Identities = 25/73 (34%), Positives = 40/73 (54%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NL + + L + F FG ++ V ++ G S+GFGFV F E+A KA++++NG Sbjct: 298 VKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355 Query: 253 YGYDNLILHVEMA 215 L+V +A Sbjct: 356 RIVATKPLYVALA 368 Score = 38.9 bits (89), Expect = 0.010 Identities = 22/62 (35%), Positives = 31/62 (50%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 S+ V +L D E L E F G + + V D T S G+ +VNF DAE+A+ Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 262 LN 257 +N Sbjct: 72 MN 73
>PABP1_MOUSE (P29341) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 55.8 bits (133), Expect = 8e-08 Identities = 29/69 (42%), Positives = 41/69 (59%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 R + +V + N ED + L ELF FG V V D+ +G S+GFGFV+F EDA Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDA 244 Query: 280 EKAISKLNG 254 +KA+ ++NG Sbjct: 245 QKAVDEMNG 253 Score = 43.5 bits (101), Expect = 4e-04 Identities = 23/69 (33%), Positives = 38/69 (55%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 R++ ++ + NL + L + F FG + V D+ S+G+GFV+F +E A Sbjct: 94 RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAA 151 Query: 280 EKAISKLNG 254 E+AI K+NG Sbjct: 152 ERAIEKMNG 160 Score = 40.8 bits (94), Expect = 0.003 Identities = 25/73 (34%), Positives = 40/73 (54%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NL + + L + F FG ++ V ++ G S+GFGFV F E+A KA++++NG Sbjct: 298 VKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355 Query: 253 YGYDNLILHVEMA 215 L+V +A Sbjct: 356 RIVATKPLYVALA 368 Score = 38.9 bits (89), Expect = 0.010 Identities = 22/62 (35%), Positives = 31/62 (50%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 S+ V +L D E L E F G + + V D T S G+ +VNF DAE+A+ Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 262 LN 257 +N Sbjct: 72 MN 73
>ELAV1_HUMAN (Q15717) ELAV-like protein 1 (Hu-antigen R) (HuR)| Length = 326 Score = 55.5 bits (132), Expect = 1e-07 Identities = 30/70 (42%), Positives = 40/70 (57%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 + NL +D E L ++F FGAV+ V V D T +GFGFV + E+A AI+ LNG Sbjct: 248 IYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASLNG 307 Query: 253 YGYDNLILHV 224 Y + IL V Sbjct: 308 YRLGDKILQV 317 Score = 51.2 bits (121), Expect = 2e-06 Identities = 29/87 (33%), Positives = 45/87 (51%) Frame = -3 Query: 469 DMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHR 290 D R ++ V L ++ + +L LF + G V + D+ G S G+GFVN+V Sbjct: 12 DCRGDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTA 71 Query: 289 EDAEKAISKLNGYGYDNLILHVEMAAP 209 +DAE+AI+ LNG + + V A P Sbjct: 72 KDAERAINTLNGLRLQSKTIKVSYARP 98 Score = 50.8 bits (120), Expect = 2e-06 Identities = 23/61 (37%), Positives = 36/61 (59%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 ++ L + D+ ++F FG + V VDQ TG+SRG F+ F R +AE+AI+ NG Sbjct: 110 ISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169 Query: 253 Y 251 + Sbjct: 170 H 170
>ROC3_ARATH (Q04836) 31 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein RNP-T) (RNA-binding protein 1/2/3) (AtRBP33) (RNA-binding protein cp31) Length = 329 Score = 55.5 bits (132), Expect = 1e-07 Identities = 38/115 (33%), Positives = 55/115 (47%) Frame = -3 Query: 550 AALGGPAKGSYVAPRLRAGAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFG 371 A+ G ++G + GAV A + ++E + V NL+ D L LF G Sbjct: 117 ASEGDVSEGDESEGDVSEGAVSERA--EFPEPSEEAKLFVGNLAYDVNSQALAMLFEQAG 174 Query: 370 AVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMAAPR 206 V V +++T SRGFGFV ++AE A+ K N Y + +L V AAPR Sbjct: 175 TVEIAEVIYNRETDQSRGFGFVTMSSVDEAETAVEKFNRYDLNGRLLTVNKAAPR 229 Score = 51.2 bits (121), Expect = 2e-06 Identities = 30/79 (37%), Positives = 40/79 (50%) Frame = -3 Query: 439 VRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKL 260 V V NL D L +LF G V V D++TG SRGFGFV ++ +AIS L Sbjct: 246 VYVGNLPWDVDNGRLEQLFSEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISAL 305 Query: 259 NGYGYDNLILHVEMAAPRP 203 +G + + V +A RP Sbjct: 306 DGQNLEGRAIRVNVAEERP 324
>SXL_DROSU (Q24668) Protein sex-lethal| Length = 354 Score = 55.1 bits (131), Expect = 1e-07 Identities = 32/88 (36%), Positives = 45/88 (51%) Frame = -3 Query: 472 HDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVH 293 HD R N ++ V L +D + +L LFR G ++ + D KTG S G+ FV+F Sbjct: 120 HDQRSSN--TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTS 177 Query: 292 REDAEKAISKLNGYGYDNLILHVEMAAP 209 D+++AI LNG N L V A P Sbjct: 178 EMDSQRAIKVLNGITVRNKRLKVSYARP 205 Score = 43.9 bits (102), Expect = 3e-04 Identities = 22/64 (34%), Positives = 37/64 (57%) Frame = -3 Query: 448 ENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI 269 + ++ VTNL + L +F +G++ + + D+ TG RG FV + RE+A++AI Sbjct: 212 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAI 271 Query: 268 SKLN 257 S LN Sbjct: 272 SALN 275
>ROC1_NICSY (Q08935) 29 kDa ribonucleoprotein A, chloroplast precursor (CP29A)| Length = 273 Score = 55.1 bits (131), Expect = 1e-07 Identities = 33/91 (36%), Positives = 41/91 (45%) Frame = -3 Query: 481 DAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVN 302 D + R + + + V NL L ELF G V V V D+ TG SRGFGFV Sbjct: 75 DGVEEERNFSPDLKIFVGNLPFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVT 134 Query: 301 FVHREDAEKAISKLNGYGYDNLILHVEMAAP 209 +E+ E A + NGY D L V P Sbjct: 135 MSSKEEVEAACQQFNGYELDGRALRVNSGPP 165 Score = 47.8 bits (112), Expect = 2e-05 Identities = 29/84 (34%), Positives = 39/84 (46%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 + N V V NL+ + L LF G V V D+ +G SRGFGFV + E+ Sbjct: 185 DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNN 244 Query: 274 AISKLNGYGYDNLILHVEMAAPRP 203 AI L+G + + V A RP Sbjct: 245 AIESLDGVDLNGRAIRVSPAEARP 268
>RT19_ARATH (P39697) 40S ribosomal protein S19, mitochondrial precursor| Length = 212 Score = 54.7 bits (130), Expect = 2e-07 Identities = 28/78 (35%), Positives = 42/78 (53%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 + LS T E L + F +F V+ V ++ TG SRG+GFVNF+ + A AIS +NG Sbjct: 35 IGGLSPGTDEHSLKDAFSSFNGVTEARVMTNKVTGRSRGYGFVNFISEDSANSAISAMNG 94 Query: 253 YGYDNLILHVEMAAPRPT 200 + + V +A P+ Sbjct: 95 QELNGFNISVNVAKDWPS 112
>PABP1_HUMAN (P11940) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 54.7 bits (130), Expect = 2e-07 Identities = 28/69 (40%), Positives = 41/69 (59%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 R + +V + N ED + L +LF FG V V D+ +G S+GFGFV+F EDA Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDA 244 Query: 280 EKAISKLNG 254 +KA+ ++NG Sbjct: 245 QKAVDEMNG 253 Score = 43.5 bits (101), Expect = 4e-04 Identities = 23/69 (33%), Positives = 38/69 (55%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 R++ ++ + NL + L + F FG + V D+ S+G+GFV+F +E A Sbjct: 94 RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAA 151 Query: 280 EKAISKLNG 254 E+AI K+NG Sbjct: 152 ERAIEKMNG 160 Score = 40.8 bits (94), Expect = 0.003 Identities = 25/73 (34%), Positives = 40/73 (54%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NL + + L + F FG ++ V ++ G S+GFGFV F E+A KA++++NG Sbjct: 298 VKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355 Query: 253 YGYDNLILHVEMA 215 L+V +A Sbjct: 356 RIVATKPLYVALA 368 Score = 38.9 bits (89), Expect = 0.010 Identities = 22/62 (35%), Positives = 31/62 (50%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 S+ V +L D E L E F G + + V D T S G+ +VNF DAE+A+ Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 262 LN 257 +N Sbjct: 72 MN 73
>PABP1_BOVIN (P61286) Polyadenylate-binding protein 1 (Poly(A)-binding protein| 1) (PABP 1) Length = 636 Score = 54.7 bits (130), Expect = 2e-07 Identities = 28/69 (40%), Positives = 41/69 (59%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 R + +V + N ED + L +LF FG V V D+ +G S+GFGFV+F EDA Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDA 244 Query: 280 EKAISKLNG 254 +KA+ ++NG Sbjct: 245 QKAVDEMNG 253 Score = 43.5 bits (101), Expect = 4e-04 Identities = 23/69 (33%), Positives = 38/69 (55%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 R++ ++ + NL + L + F FG + V D+ S+G+GFV+F +E A Sbjct: 94 RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAA 151 Query: 280 EKAISKLNG 254 E+AI K+NG Sbjct: 152 ERAIEKMNG 160 Score = 40.8 bits (94), Expect = 0.003 Identities = 25/73 (34%), Positives = 40/73 (54%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NL + + L + F FG ++ V ++ G S+GFGFV F E+A KA++++NG Sbjct: 298 VKNLDDGIDDERLRKEFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355 Query: 253 YGYDNLILHVEMA 215 L+V +A Sbjct: 356 RIVATKPLYVALA 368 Score = 38.9 bits (89), Expect = 0.010 Identities = 22/62 (35%), Positives = 31/62 (50%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 S+ V +L D E L E F G + + V D T S G+ +VNF DAE+A+ Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 262 LN 257 +N Sbjct: 72 MN 73
>ELAV1_MOUSE (P70372) ELAV-like protein 1 (Hu-antigen R) (HuR) (Elav-like| generic protein) (MelG) Length = 326 Score = 54.3 bits (129), Expect = 2e-07 Identities = 29/70 (41%), Positives = 40/70 (57%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 + NL +D E L ++F FGAV+ V V D T +GFGFV + E++ AI+ LNG Sbjct: 248 IYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEESAMAIASLNG 307 Query: 253 YGYDNLILHV 224 Y + IL V Sbjct: 308 YRLGDKILQV 317 Score = 53.5 bits (127), Expect = 4e-07 Identities = 31/97 (31%), Positives = 47/97 (48%) Frame = -3 Query: 499 AGAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSR 320 +G D R ++ V L ++ + +L LF + G V + D+ G S Sbjct: 2 SGGYEDHMAEDCRGDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSL 61 Query: 319 GFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMAAP 209 G+GFVN+V +DAE+AIS LNG + + V A P Sbjct: 62 GYGFVNYVTAKDAERAISTLNGLRLQSKTIKVSYARP 98 Score = 47.4 bits (111), Expect = 3e-05 Identities = 22/61 (36%), Positives = 35/61 (57%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 ++ L + D+ ++F FG + V VDQ TG+SRG F+ F R +AE+AI+ G Sbjct: 110 ISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFIG 169 Query: 253 Y 251 + Sbjct: 170 H 170
>SXL_CERCA (O61374) Sex-lethal homolog (CCSXL)| Length = 348 Score = 54.3 bits (129), Expect = 2e-07 Identities = 29/75 (38%), Positives = 40/75 (53%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V L +D + +L LFRT G ++ + D KTG S G+ FV+F D+++AI LNG Sbjct: 114 VNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFAAETDSQRAIKSLNG 173 Query: 253 YGYDNLILHVEMAAP 209 N L V A P Sbjct: 174 ITVRNKRLKVSYARP 188 Score = 44.3 bits (103), Expect = 2e-04 Identities = 23/64 (35%), Positives = 36/64 (56%) Frame = -3 Query: 448 ENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI 269 + ++ VTNL + L +F +G + + + D+ TG RG FV F RE+A++AI Sbjct: 195 DTNLYVTNLPRTITDDQLDTIFGKYGMIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAI 254 Query: 268 SKLN 257 S LN Sbjct: 255 SALN 258
>PABP3_ARATH (O64380) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) Length = 660 Score = 54.3 bits (129), Expect = 2e-07 Identities = 38/97 (39%), Positives = 52/97 (53%), Gaps = 10/97 (10%) Frame = -3 Query: 475 GHDMRRRN---DENS-------VRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGM 326 GH +RR+ DEN+ V V NL ++ E +L + F FG +S V DQ +G Sbjct: 209 GHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQ-SGN 267 Query: 325 SRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMA 215 SR FGFVNF E A A+ K+NG + +L+V A Sbjct: 268 SRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRA 304 Score = 49.7 bits (117), Expect = 6e-06 Identities = 27/69 (39%), Positives = 38/69 (55%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 R + + ++ + NL L E F +FG + VA+D TG S+G+GFV F E A Sbjct: 131 RLSGKGNIFIKNLDASIDNKALFETFSSFGTILSCKVAMDV-TGRSKGYGFVQFEKEESA 189 Query: 280 EKAISKLNG 254 + AI KLNG Sbjct: 190 QAAIDKLNG 198 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/71 (35%), Positives = 43/71 (60%) Frame = -3 Query: 427 NLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNGYG 248 NL + + L E+F +G V+ V ++ + GMSRGFGFV + + E+A +A+S++NG Sbjct: 338 NLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQ-GMSRGFGFVAYSNPEEALRALSEMNGKM 396 Query: 247 YDNLILHVEMA 215 L++ +A Sbjct: 397 IGRKPLYIALA 407
>SFRS2_RAT (Q6PDU1) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 53.9 bits (128), Expect = 3e-07 Identities = 30/76 (39%), Positives = 42/76 (55%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 S++V NL+ T L +F +G V VY+ D+ T SRGF FV F + DAE A+ Sbjct: 14 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 73 Query: 262 LNGYGYDNLILHVEMA 215 ++G D L V+MA Sbjct: 74 MDGAVLDGRELRVQMA 89
>SFRS2_PANTR (Q5R1W5) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) Length = 220 Score = 53.9 bits (128), Expect = 3e-07 Identities = 30/76 (39%), Positives = 42/76 (55%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 S++V NL+ T L +F +G V VY+ D+ T SRGF FV F + DAE A+ Sbjct: 14 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 73 Query: 262 LNGYGYDNLILHVEMA 215 ++G D L V+MA Sbjct: 74 MDGAVLDGRELRVQMA 89
>SFRS2_MOUSE (Q62093) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) (Putative myelin regulatory factor 1) (MRF-1) Length = 220 Score = 53.9 bits (128), Expect = 3e-07 Identities = 30/76 (39%), Positives = 42/76 (55%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 S++V NL+ T L +F +G V VY+ D+ T SRGF FV F + DAE A+ Sbjct: 14 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 73 Query: 262 LNGYGYDNLILHVEMA 215 ++G D L V+MA Sbjct: 74 MDGAVLDGRELRVQMA 89
>SFRS2_HUMAN (Q01130) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 220 Score = 53.9 bits (128), Expect = 3e-07 Identities = 30/76 (39%), Positives = 42/76 (55%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 S++V NL+ T L +F +G V VY+ D+ T SRGF FV F + DAE A+ Sbjct: 14 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 73 Query: 262 LNGYGYDNLILHVEMA 215 ++G D L V+MA Sbjct: 74 MDGAVLDGRELRVQMA 89
>ELAV2_MOUSE (Q60899) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Mel-N1) Length = 360 Score = 53.9 bits (128), Expect = 3e-07 Identities = 29/70 (41%), Positives = 40/70 (57%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NL+ D E L ++F FGAV+ V V D T +GFGFV + ++A AI+ LNG Sbjct: 281 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 340 Query: 253 YGYDNLILHV 224 Y + +L V Sbjct: 341 YRLGDRVLQV 350 Score = 53.1 bits (126), Expect = 5e-07 Identities = 27/82 (32%), Positives = 45/82 (54%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 + + ++ V L ++ + +L LF + G + + D+ TG S G+GFVN++ +DAEK Sbjct: 36 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 95 Query: 274 AISKLNGYGYDNLILHVEMAAP 209 AI+ LNG + V A P Sbjct: 96 AINTLNGLRLQTKTIKVSYARP 117 Score = 50.1 bits (118), Expect = 4e-06 Identities = 25/60 (41%), Positives = 37/60 (61%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V+ L + + +L +LF +G + + VDQ TG+SRG GF+ F R +AE+AI LNG Sbjct: 129 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
>SFRS2_CHICK (P30352) Splicing factor, arginine/serine-rich 2 (Splicing factor| SC35) (SC-35) (Splicing component, 35 kDa) (PR264 protein) Length = 221 Score = 53.9 bits (128), Expect = 3e-07 Identities = 30/76 (39%), Positives = 42/76 (55%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 S++V NL+ T L +F +G V VY+ D+ T SRGF FV F + DAE A+ Sbjct: 15 SLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDA 74 Query: 262 LNGYGYDNLILHVEMA 215 ++G D L V+MA Sbjct: 75 MDGAVLDGRELRVQMA 90
>PABP3_HUMAN (Q9H361) Polyadenylate-binding protein 3 (Poly(A)-binding protein| 3) (PABP 3) (Testis-specific poly(A)-binding protein) Length = 631 Score = 53.9 bits (128), Expect = 3e-07 Identities = 28/69 (40%), Positives = 41/69 (59%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 R + +V + N ED + L +LF FG V V D+ +G S+GFGFV+F EDA Sbjct: 186 RAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE-SGKSKGFGFVSFERHEDA 244 Query: 280 EKAISKLNG 254 +KA+ ++NG Sbjct: 245 QKAVDEMNG 253 Score = 41.6 bits (96), Expect = 0.002 Identities = 25/73 (34%), Positives = 40/73 (54%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NL + + L + F FG ++ V ++ G S+GFGFV F E+A KA++++NG Sbjct: 298 VKNLDDGIDDERLRKAFSPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355 Query: 253 YGYDNLILHVEMA 215 L+V +A Sbjct: 356 RIVATKPLYVALA 368 Score = 41.6 bits (96), Expect = 0.002 Identities = 23/69 (33%), Positives = 36/69 (52%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 R++ ++ V NL + L + FG + V D+ S+G+GFV+F E A Sbjct: 94 RKSGVGNIFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENG--SKGYGFVHFETHEAA 151 Query: 280 EKAISKLNG 254 E+AI K+NG Sbjct: 152 ERAIKKMNG 160 Score = 38.9 bits (89), Expect = 0.010 Identities = 21/62 (33%), Positives = 31/62 (50%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 S+ V +L D E L E F G + + + D T S + +VNF H +DAE A+ Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDT 71 Query: 262 LN 257 +N Sbjct: 72 MN 73
>RBM3_MOUSE (O89086) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) Length = 153 Score = 53.9 bits (128), Expect = 3e-07 Identities = 29/80 (36%), Positives = 45/80 (56%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 ++E + V L+ +T E L + F +FG +S V V D++T SRGFGF+ F + E A Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASD 62 Query: 274 AISKLNGYGYDNLILHVEMA 215 A+ +NG D + V+ A Sbjct: 63 AMRAMNGESLDGRQIRVDHA 82
>ELAV2_RAT (Q8CH84) ELAV-like protein 2 (Hu-antigen B) (HuB)| Length = 359 Score = 53.9 bits (128), Expect = 3e-07 Identities = 29/70 (41%), Positives = 40/70 (57%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NL+ D E L ++F FGAV+ V V D T +GFGFV + ++A AI+ LNG Sbjct: 280 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 339 Query: 253 YGYDNLILHV 224 Y + +L V Sbjct: 340 YRLGDRVLQV 349 Score = 52.0 bits (123), Expect = 1e-06 Identities = 26/72 (36%), Positives = 40/72 (55%) Frame = -3 Query: 424 LSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNGYGY 245 L ++ + +L LF + G + + D+ TG S G+GFVN++ +DAEKAI+ LNG Sbjct: 46 LPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRL 105 Query: 244 DNLILHVEMAAP 209 + V A P Sbjct: 106 QTKTIKVSYARP 117 Score = 50.1 bits (118), Expect = 4e-06 Identities = 25/60 (41%), Positives = 37/60 (61%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V+ L + + +L +LF +G + + VDQ TG+SRG GF+ F R +AE+AI LNG Sbjct: 129 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
>ELAV2_PONPY (Q5R9Z6) ELAV-like protein 2| Length = 359 Score = 53.9 bits (128), Expect = 3e-07 Identities = 29/70 (41%), Positives = 40/70 (57%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NL+ D E L ++F FGAV+ V V D T +GFGFV + ++A AI+ LNG Sbjct: 280 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 339 Query: 253 YGYDNLILHV 224 Y + +L V Sbjct: 340 YRLGDRVLQV 349 Score = 53.1 bits (126), Expect = 5e-07 Identities = 27/82 (32%), Positives = 45/82 (54%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 + + ++ V L ++ + +L LF + G + + D+ TG S G+GFVN++ +DAEK Sbjct: 36 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 95 Query: 274 AISKLNGYGYDNLILHVEMAAP 209 AI+ LNG + V A P Sbjct: 96 AINTLNGLRLQTKTIKVSYARP 117 Score = 50.1 bits (118), Expect = 4e-06 Identities = 25/60 (41%), Positives = 37/60 (61%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V+ L + + +L +LF +G + + VDQ TG+SRG GF+ F R +AE+AI LNG Sbjct: 129 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
>ELAV2_HUMAN (Q12926) ELAV-like protein 2 (Hu-antigen B) (HuB) (ELAV-like| neuronal protein 1) (Nervous system-specific RNA-binding protein Hel-N1) Length = 359 Score = 53.9 bits (128), Expect = 3e-07 Identities = 29/70 (41%), Positives = 40/70 (57%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NL+ D E L ++F FGAV+ V V D T +GFGFV + ++A AI+ LNG Sbjct: 280 VYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNG 339 Query: 253 YGYDNLILHV 224 Y + +L V Sbjct: 340 YRLGDRVLQV 349 Score = 53.1 bits (126), Expect = 5e-07 Identities = 27/82 (32%), Positives = 45/82 (54%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 + + ++ V L ++ + +L LF + G + + D+ TG S G+GFVN++ +DAEK Sbjct: 36 DSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEK 95 Query: 274 AISKLNGYGYDNLILHVEMAAP 209 AI+ LNG + V A P Sbjct: 96 AINTLNGLRLQTKTIKVSYARP 117 Score = 50.1 bits (118), Expect = 4e-06 Identities = 25/60 (41%), Positives = 37/60 (61%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V+ L + + +L +LF +G + + VDQ TG+SRG GF+ F R +AE+AI LNG Sbjct: 129 VSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNG 188
>ROC2_ARATH (Q43349) 29 kDa ribonucleoprotein, chloroplast precursor| (RNA-binding protein cp29) Length = 342 Score = 53.5 bits (127), Expect = 4e-07 Identities = 30/77 (38%), Positives = 38/77 (49%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NLS + L +LF + G V V V D+ TG SRGFGFV + E A + NG Sbjct: 103 VGNLSFNVDSAQLAQLFESAGNVEMVEVIYDKVTGRSRGFGFVTMSTAAEVEAAAQQFNG 162 Query: 253 YGYDNLILHVEMAAPRP 203 Y ++ L V P P Sbjct: 163 YEFEGRPLRVNAGPPPP 179 Score = 50.4 bits (119), Expect = 3e-06 Identities = 30/81 (37%), Positives = 40/81 (49%) Frame = -3 Query: 445 NSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAIS 266 N + V NLS + L LF G V V D+ +G S+GFGFV ++ +KAI+ Sbjct: 257 NRLYVGNLSWGVDDMALENLFNEQGKVVEARVIYDRDSGRSKGFGFVTLSSSQEVQKAIN 316 Query: 265 KLNGYGYDNLILHVEMAAPRP 203 LNG D + V A RP Sbjct: 317 SLNGADLDGRQIRVSEAEARP 337
>RBM3_HUMAN (P98179) Putative RNA-binding protein 3 (RNA-binding motif protein| 3) (RNPL) Length = 157 Score = 53.5 bits (127), Expect = 4e-07 Identities = 29/80 (36%), Positives = 45/80 (56%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 ++E + V L+ +T E L + F +FG +S V V D++T SRGFGF+ F + E A Sbjct: 3 SEEGKLFVGGLNFNTDEQALEDHFSSFGPISEVVVVKDRETQRSRGFGFITFTNPEHASV 62 Query: 274 AISKLNGYGYDNLILHVEMA 215 A+ +NG D + V+ A Sbjct: 63 AMRAMNGESLDGRQIRVDHA 82
>ROC1_NICPL (P49313) 30 kDa ribonucleoprotein, chloroplast precursor (CP-RBP30)| Length = 279 Score = 53.5 bits (127), Expect = 4e-07 Identities = 32/85 (37%), Positives = 39/85 (45%) Frame = -3 Query: 463 RRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHRED 284 R + + + V NL L ELF G V V V D+ TG SRGFGFV +E+ Sbjct: 81 RNFSPDLKIFVGNLLFSADSAALAELFERAGNVEMVEVIYDKLTGRSRGFGFVTMSSKEE 140 Query: 283 AEKAISKLNGYGYDNLILHVEMAAP 209 E A + NGY D L V P Sbjct: 141 VEAACQQFNGYELDGRALRVNSGPP 165 Score = 47.8 bits (112), Expect = 2e-05 Identities = 29/84 (34%), Positives = 39/84 (46%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 + N V V NL+ + L LF G V V D+ +G SRGFGFV + E+ Sbjct: 191 DSSNRVYVGNLAWGVDQDALETLFSEQGKVVDAKVVYDRDSGRSRGFGFVTYSSAEEVNN 250 Query: 274 AISKLNGYGYDNLILHVEMAAPRP 203 AI L+G + + V A RP Sbjct: 251 AIESLDGVDLNGRAIRVSPAEARP 274
>NGR1_YEAST (P32831) Negative growth regulatory protein NGR1 (RNA-binding| protein RBP1) Length = 672 Score = 53.5 bits (127), Expect = 4e-07 Identities = 33/82 (40%), Positives = 45/82 (54%), Gaps = 1/82 (1%) Frame = -3 Query: 448 ENSVRVTNLSEDTREPDLLELFRT-FGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKA 272 E S+ V +LS E DLL LF+T F +V V V D TG SR FGFV F ++ +A Sbjct: 191 EFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRA 250 Query: 271 ISKLNGYGYDNLILHVEMAAPR 206 + +++G + L V A PR Sbjct: 251 LIEMSGKWFQGRALRVAYATPR 272 Score = 31.6 bits (70), Expect = 1.6 Identities = 22/64 (34%), Positives = 29/64 (45%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 +V V L T E L LF+ FG + V + + GFV F R DAE +I Sbjct: 361 TVFVGGLVPKTTEFQLRSLFKPFGPILNVRIP------NGKNCGFVKFEKRIDAEASIQG 414 Query: 262 LNGY 251 L G+ Sbjct: 415 LQGF 418
>ELAV3_MOUSE (Q60900) ELAV-like protein 3 (Hu-antigen C) (HuC)| Length = 367 Score = 53.5 bits (127), Expect = 4e-07 Identities = 30/70 (42%), Positives = 39/70 (55%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NLS + E L +LF FGAV+ V V D T +GFGFV + ++A AI+ LNG Sbjct: 288 VYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 347 Query: 253 YGYDNLILHV 224 Y +L V Sbjct: 348 YRLGERVLQV 357 Score = 48.5 bits (114), Expect = 1e-05 Identities = 23/60 (38%), Positives = 37/60 (61%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V+ L + + ++ +LF +G + + +DQ TG+SRG GF+ F R +AE+AI LNG Sbjct: 129 VSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNG 188 Score = 48.5 bits (114), Expect = 1e-05 Identities = 33/111 (29%), Positives = 52/111 (46%) Frame = -3 Query: 541 GGPAKGSYVAPRLRAGAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVS 362 GGPA P L G + G + + + ++ V L ++ + + LF + G + Sbjct: 15 GGPA-----GPALPNGPL---LGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIE 66 Query: 361 RVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMAAP 209 + D+ TG S G+GFVN+ DA+KAI+ LNG + V A P Sbjct: 67 SCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARP 117
>ELAV3_HUMAN (Q14576) ELAV-like protein 3 (Hu-antigen C) (HuC) (Paraneoplastic| cerebellar degeneration-associated antigen) (Paraneoplastic limbic encephalitis antigen 21) Length = 367 Score = 53.5 bits (127), Expect = 4e-07 Identities = 30/70 (42%), Positives = 39/70 (55%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NLS + E L +LF FGAV+ V V D T +GFGFV + ++A AI+ LNG Sbjct: 288 VYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNG 347 Query: 253 YGYDNLILHV 224 Y +L V Sbjct: 348 YRLGERVLQV 357 Score = 49.3 bits (116), Expect = 7e-06 Identities = 24/60 (40%), Positives = 37/60 (61%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V+ L + + ++ +LF +G + + VDQ TG+SRG GF+ F R +AE+AI LNG Sbjct: 129 VSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNG 188 Score = 48.5 bits (114), Expect = 1e-05 Identities = 33/111 (29%), Positives = 52/111 (46%) Frame = -3 Query: 541 GGPAKGSYVAPRLRAGAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVS 362 GGPA P L G + G + + + ++ V L ++ + + LF + G + Sbjct: 15 GGPA-----GPALPNGPL---LGTNGATDDSKTNLIVNYLPQNMTQDEFKSLFGSIGDIE 66 Query: 361 RVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMAAP 209 + D+ TG S G+GFVN+ DA+KAI+ LNG + V A P Sbjct: 67 SCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARP 117
>SF3B4_HUMAN (Q15427) Splicing factor 3B subunit 4 (Spliceosome-associated| protein 49) (SAP 49) (SF3b50) (Pre-mRNA-splicing factor SF3b 49 kDa subunit) Length = 424 Score = 53.1 bits (126), Expect = 5e-07 Identities = 29/74 (39%), Positives = 40/74 (54%) Frame = -3 Query: 478 AGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNF 299 A + RN + +V V L E EP L ELF G V ++ D+ TG +G+GFV F Sbjct: 2 AAGPISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEF 61 Query: 298 VHREDAEKAISKLN 257 + EDA+ AI +N Sbjct: 62 LSEEDADYAIKIMN 75 Score = 37.7 bits (86), Expect = 0.022 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 1/64 (1%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRV-YVAVDQKTGMSRGFGFVNFVHREDAEKAIS 266 ++ + NL + E L + F FG + + + D TG S+G+ F+NF + ++ AI Sbjct: 101 NIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIE 160 Query: 265 KLNG 254 +NG Sbjct: 161 AMNG 164
>PABP5_PONPY (P60050) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.1 bits (126), Expect = 5e-07 Identities = 37/104 (35%), Positives = 51/104 (49%) Frame = -3 Query: 526 GSYVAPRLRAGAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVA 347 G + P RA V T R R +V V N+ +D + L ELF +G V V Sbjct: 178 GRFKFPEERAAEVRT------RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVI 231 Query: 346 VDQKTGMSRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMA 215 D +G S+GFGFV + E A+KA+ L+G D +L+V A Sbjct: 232 RDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 48.1 bits (113), Expect = 2e-05 Identities = 27/78 (34%), Positives = 42/78 (53%) Frame = -3 Query: 439 VRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKL 260 + + NL E + L E F +FG++SR V ++ G +GFG V F E+A KA+ ++ Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 259 NGYGYDNLILHVEMAAPR 206 NG + LHV + R Sbjct: 362 NGRIVGSKPLHVTLGQAR 379 Score = 34.3 bits (77), Expect = 0.24 Identities = 20/59 (33%), Positives = 29/59 (49%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLN 257 V +L D E L + FR G + + D T G+G+VNF DAE A++ +N Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80 Score = 33.9 bits (76), Expect = 0.31 Identities = 22/82 (26%), Positives = 38/82 (46%) Frame = -3 Query: 469 DMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHR 290 D R++ ++ + NL + L LF FG + V D S+G+ +V+F Sbjct: 98 DRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG--SKGYAYVHFDSL 155 Query: 289 EDAEKAISKLNGYGYDNLILHV 224 A +AI +NG +N ++V Sbjct: 156 AAANRAIWHMNGVRLNNRQVYV 177
>PABP5_PANTR (P60049) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.1 bits (126), Expect = 5e-07 Identities = 37/104 (35%), Positives = 51/104 (49%) Frame = -3 Query: 526 GSYVAPRLRAGAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVA 347 G + P RA V T R R +V V N+ +D + L ELF +G V V Sbjct: 178 GRFKFPEERAAEVRT------RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVI 231 Query: 346 VDQKTGMSRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMA 215 D +G S+GFGFV + E A+KA+ L+G D +L+V A Sbjct: 232 RDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 48.1 bits (113), Expect = 2e-05 Identities = 27/78 (34%), Positives = 42/78 (53%) Frame = -3 Query: 439 VRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKL 260 + + NL E + L E F +FG++SR V ++ G +GFG V F E+A KA+ ++ Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 259 NGYGYDNLILHVEMAAPR 206 NG + LHV + R Sbjct: 362 NGRIVGSKPLHVTLGQAR 379 Score = 34.3 bits (77), Expect = 0.24 Identities = 20/59 (33%), Positives = 29/59 (49%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLN 257 V +L D E L + FR G + + D T G+G+VNF DAE A++ +N Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80 Score = 33.9 bits (76), Expect = 0.31 Identities = 22/82 (26%), Positives = 38/82 (46%) Frame = -3 Query: 469 DMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHR 290 D R++ ++ + NL + L LF FG + V D S+G+ +V+F Sbjct: 98 DRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG--SKGYAYVHFDSL 155 Query: 289 EDAEKAISKLNGYGYDNLILHV 224 A +AI +NG +N ++V Sbjct: 156 AAANRAIWHMNGVRLNNRQVYV 177
>PABP5_MACMU (Q7JGR2) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.1 bits (126), Expect = 5e-07 Identities = 37/104 (35%), Positives = 51/104 (49%) Frame = -3 Query: 526 GSYVAPRLRAGAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVA 347 G + P RA V T R R +V V N+ +D + L ELF +G V V Sbjct: 178 GRFKFPEERAAEVRT------RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVI 231 Query: 346 VDQKTGMSRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMA 215 D +G S+GFGFV + E A+KA+ L+G D +L+V A Sbjct: 232 RDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 48.5 bits (114), Expect = 1e-05 Identities = 27/78 (34%), Positives = 42/78 (53%) Frame = -3 Query: 439 VRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKL 260 + + NL E + L E F +FG++SR V ++ G +GFG V F E+A KA+ ++ Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 259 NGYGYDNLILHVEMAAPR 206 NG + LHV + R Sbjct: 362 NGRVVGSKPLHVTLGQAR 379 Score = 34.3 bits (77), Expect = 0.24 Identities = 20/59 (33%), Positives = 29/59 (49%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLN 257 V +L D E L + FR G + + D T G+G+VNF DAE A++ +N Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80 Score = 33.9 bits (76), Expect = 0.31 Identities = 22/82 (26%), Positives = 38/82 (46%) Frame = -3 Query: 469 DMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHR 290 D R++ ++ + NL + L LF FG + V D S+G+ +V+F Sbjct: 98 DRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG--SKGYAYVHFDSL 155 Query: 289 EDAEKAISKLNGYGYDNLILHV 224 A +AI +NG +N ++V Sbjct: 156 AAANRAIWHMNGVRLNNRQVYV 177
>PABP5_HYLLA (P60048) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.1 bits (126), Expect = 5e-07 Identities = 37/104 (35%), Positives = 51/104 (49%) Frame = -3 Query: 526 GSYVAPRLRAGAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVA 347 G + P RA V T R R +V V N+ +D + L ELF +G V V Sbjct: 178 GRFKFPEERAAEVRT------RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVI 231 Query: 346 VDQKTGMSRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMA 215 D +G S+GFGFV + E A+KA+ L+G D +L+V A Sbjct: 232 RDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 48.1 bits (113), Expect = 2e-05 Identities = 27/78 (34%), Positives = 42/78 (53%) Frame = -3 Query: 439 VRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKL 260 + + NL E + L E F +FG++SR V ++ G +GFG V F E+A KA+ ++ Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 259 NGYGYDNLILHVEMAAPR 206 NG + LHV + R Sbjct: 362 NGRIVGSKPLHVTLGQAR 379 Score = 34.3 bits (77), Expect = 0.24 Identities = 20/59 (33%), Positives = 29/59 (49%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLN 257 V +L D E L + FR G + + D T G+G+VNF DAE A++ +N Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80 Score = 33.9 bits (76), Expect = 0.31 Identities = 22/82 (26%), Positives = 38/82 (46%) Frame = -3 Query: 469 DMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHR 290 D R++ ++ + NL + L LF FG + V D S+G+ +V+F Sbjct: 98 DRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG--SKGYAYVHFDSL 155 Query: 289 EDAEKAISKLNGYGYDNLILHV 224 A +AI +NG +N ++V Sbjct: 156 AAANRAIWHMNGVRLNNRQVYV 177
>PABP5_HUMAN (Q96DU9) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.1 bits (126), Expect = 5e-07 Identities = 37/104 (35%), Positives = 51/104 (49%) Frame = -3 Query: 526 GSYVAPRLRAGAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVA 347 G + P RA V T R R +V V N+ +D + L ELF +G V V Sbjct: 178 GRFKFPEERAAEVRT------RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVI 231 Query: 346 VDQKTGMSRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMA 215 D +G S+GFGFV + E A+KA+ L+G D +L+V A Sbjct: 232 RDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 48.1 bits (113), Expect = 2e-05 Identities = 27/78 (34%), Positives = 42/78 (53%) Frame = -3 Query: 439 VRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKL 260 + + NL E + L E F +FG++SR V ++ G +GFG V F E+A KA+ ++ Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 259 NGYGYDNLILHVEMAAPR 206 NG + LHV + R Sbjct: 362 NGRIVGSKPLHVTLGQAR 379 Score = 34.3 bits (77), Expect = 0.24 Identities = 20/59 (33%), Positives = 29/59 (49%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLN 257 V +L D E L + FR G + + D T G+G+VNF DAE A++ +N Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80 Score = 33.9 bits (76), Expect = 0.31 Identities = 22/82 (26%), Positives = 38/82 (46%) Frame = -3 Query: 469 DMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHR 290 D R++ ++ + NL + L LF FG + V D S+G+ +V+F Sbjct: 98 DRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG--SKGYAYVHFDSL 155 Query: 289 EDAEKAISKLNGYGYDNLILHV 224 A +AI +NG +N ++V Sbjct: 156 AAANRAIWHMNGVRLNNRQVYV 177
>PABP5_GORGO (P60047) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 382 Score = 53.1 bits (126), Expect = 5e-07 Identities = 37/104 (35%), Positives = 51/104 (49%) Frame = -3 Query: 526 GSYVAPRLRAGAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVA 347 G + P RA V T R R +V V N+ +D + L ELF +G V V Sbjct: 178 GRFKFPEERAAEVRT------RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVI 231 Query: 346 VDQKTGMSRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMA 215 D +G S+GFGFV + E A+KA+ L+G D +L+V A Sbjct: 232 RDA-SGKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRA 274 Score = 48.1 bits (113), Expect = 2e-05 Identities = 27/78 (34%), Positives = 42/78 (53%) Frame = -3 Query: 439 VRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKL 260 + + NL E + L E F +FG++SR V ++ G +GFG V F E+A KA+ ++ Sbjct: 304 IYIKNLDETINDEKLKEEFSSFGSISRAKVMME--VGQGKGFGVVCFSSFEEATKAVDEM 361 Query: 259 NGYGYDNLILHVEMAAPR 206 NG + LHV + R Sbjct: 362 NGRIVGSKPLHVTLGQAR 379 Score = 34.3 bits (77), Expect = 0.24 Identities = 20/59 (33%), Positives = 29/59 (49%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLN 257 V +L D E L + FR G + + D T G+G+VNF DAE A++ +N Sbjct: 22 VGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTMN 80 Score = 33.9 bits (76), Expect = 0.31 Identities = 22/82 (26%), Positives = 38/82 (46%) Frame = -3 Query: 469 DMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHR 290 D R++ ++ + NL + L LF FG + V D S+G+ +V+F Sbjct: 98 DRLRKSGVGNIFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNG--SKGYAYVHFDSL 155 Query: 289 EDAEKAISKLNGYGYDNLILHV 224 A +AI +NG +N ++V Sbjct: 156 AAANRAIWHMNGVRLNNRQVYV 177
>TIA1_MOUSE (P52912) Nucleolysin TIA-1 (RNA-binding protein TIA-1)| Length = 386 Score = 53.1 bits (126), Expect = 5e-07 Identities = 29/87 (33%), Positives = 43/87 (49%) Frame = -3 Query: 463 RRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHRED 284 +R D V V +LS + D+ F FG +S V D TG S+G+GFV+F ++ D Sbjct: 100 QRSQDHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWD 159 Query: 283 AEKAISKLNGYGYDNLILHVEMAAPRP 203 AE AI ++ G + A +P Sbjct: 160 AENAIQQMGGQWLGGRQIRTNWATRKP 186 Score = 29.6 bits (65), Expect = 5.9 Identities = 19/60 (31%), Positives = 28/60 (46%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NLS D E +L+LF G + +D T + + FV F A A++ +NG Sbjct: 11 VGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNG 68
>RBM19_MOUSE (Q8R3C6) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 952 Score = 53.1 bits (126), Expect = 5e-07 Identities = 27/76 (35%), Positives = 43/76 (56%) Frame = -3 Query: 451 DENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKA 272 D + V NLS + E DL +LF +G +S ++ +D T +GF FV F+ E A KA Sbjct: 398 DSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKA 457 Query: 271 ISKLNGYGYDNLILHV 224 ++++G + +LHV Sbjct: 458 YAEVDGQVFQGRMLHV 473 Score = 46.2 bits (108), Expect = 6e-05 Identities = 25/87 (28%), Positives = 46/87 (52%), Gaps = 1/87 (1%) Frame = -3 Query: 517 VAPRLRAGAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQ 338 ++ R A+ + + ++ + + V N+ + ++ ELF TFG + V + Sbjct: 800 ISERATKPALTSTRKKQVPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKM 859 Query: 337 K-TGMSRGFGFVNFVHREDAEKAISKL 260 TG RGFGFV+F+ ++DA+KA + L Sbjct: 860 TGTGAHRGFGFVDFITKQDAKKAFNAL 886
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 53.1 bits (126), Expect = 5e-07 Identities = 29/69 (42%), Positives = 38/69 (55%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 R + +V + N ED + L E F +GA V V D G SRGFGFV+F EDA Sbjct: 186 RAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH-GKSRGFGFVSFERHEDA 244 Query: 280 EKAISKLNG 254 +KA+ +NG Sbjct: 245 QKAVDDMNG 253 Score = 43.5 bits (101), Expect = 4e-04 Identities = 23/69 (33%), Positives = 38/69 (55%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 R++ ++ + NL + L + F FG + V D+ S+G+GFV+F +E A Sbjct: 94 RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAA 151 Query: 280 EKAISKLNG 254 E+AI K+NG Sbjct: 152 ERAIDKMNG 160 Score = 41.2 bits (95), Expect = 0.002 Identities = 25/73 (34%), Positives = 41/73 (56%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NL + + L + F FG+++ V ++ G S+GFGFV F E+A KA++++NG Sbjct: 298 VKNLDDGIDDERLRKEFTPFGSITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355 Query: 253 YGYDNLILHVEMA 215 L+V +A Sbjct: 356 RIVATKPLYVALA 368 Score = 38.9 bits (89), Expect = 0.010 Identities = 22/62 (35%), Positives = 31/62 (50%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 S+ V +L D E L E F G + + V D T S G+ +VNF DAE+A+ Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 262 LN 257 +N Sbjct: 72 MN 73
>ROAA_MOUSE (Q99020) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (CArG-binding factor-A) (CBF-A) Length = 285 Score = 52.8 bits (125), Expect = 7e-07 Identities = 31/96 (32%), Positives = 42/96 (43%) Frame = -3 Query: 550 AALGGPAKGSYVAPRLRAGAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFG 371 AA G G+ AP D + + D + V LS DT + DL + F FG Sbjct: 40 AASAGSGGGTTTAPSGNQNGAEGDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFG 99 Query: 370 AVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 V + +D TG SRGFGF+ F EK + + Sbjct: 100 EVVDCTIKMDPNTGRSRGFGFILFKDSSSVEKVLDQ 135
>PABP5_ARATH (Q05196) Polyadenylate-binding protein 5 (Poly(A)-binding protein| 5) (PABP 5) Length = 668 Score = 52.8 bits (125), Expect = 7e-07 Identities = 35/97 (36%), Positives = 50/97 (51%), Gaps = 10/97 (10%) Frame = -3 Query: 475 GHDMRRRNDENS----------VRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGM 326 GH +RR++ S V V NL ++ + +L + F +G +S V DQ +G Sbjct: 205 GHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQ-SGN 263 Query: 325 SRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMA 215 SR FGFVNFV E A A+ K+NG +L+V A Sbjct: 264 SRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRA 300 Score = 47.4 bits (111), Expect = 3e-05 Identities = 27/69 (39%), Positives = 37/69 (53%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 R + + +V + NL L E F +FG + VA+D G S+G+GFV F E A Sbjct: 127 RLSGKGNVFIKNLDASIDNKALYETFSSFGTILSCKVAMDV-VGRSKGYGFVQFEKEETA 185 Query: 280 EKAISKLNG 254 + AI KLNG Sbjct: 186 QAAIDKLNG 194 Score = 43.1 bits (100), Expect = 5e-04 Identities = 24/77 (31%), Positives = 45/77 (58%) Frame = -3 Query: 445 NSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAIS 266 +++ + NL + + L E+F +G V+ V ++ + G+SRGFGFV + + E+A A+ Sbjct: 328 SNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQ-GLSRGFGFVAYSNPEEALLAMK 386 Query: 265 KLNGYGYDNLILHVEMA 215 ++NG L+V +A Sbjct: 387 EMNGKMIGRKPLYVALA 403 Score = 38.9 bits (89), Expect = 0.010 Identities = 24/74 (32%), Positives = 37/74 (50%) Frame = -3 Query: 478 AGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNF 299 A + + + +S+ V +L E LL+LF V + V D T S G+ +VNF Sbjct: 34 AAAEALQTHPNSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDL-THRSLGYAYVNF 92 Query: 298 VHREDAEKAISKLN 257 + EDA +A+ LN Sbjct: 93 ANPEDASRAMESLN 106
>ROC2_NICSY (Q08937) 29 kDa ribonucleoprotein B, chloroplast precursor (CP29B)| Length = 291 Score = 52.8 bits (125), Expect = 7e-07 Identities = 33/87 (37%), Positives = 41/87 (47%) Frame = -3 Query: 463 RRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHRED 284 R + N V V NLS + L ELF G V V D+ +G SRGFGFV + ++ Sbjct: 201 RSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSSKE 260 Query: 283 AEKAISKLNGYGYDNLILHVEMAAPRP 203 AI LNG D + V A RP Sbjct: 261 VNDAIDSLNGVDLDGRSIRVSAAEERP 287 Score = 49.7 bits (117), Expect = 6e-06 Identities = 32/86 (37%), Positives = 41/86 (47%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 R +++ + V NL L LF G V V V D+ TG SRGFGFV +E+ Sbjct: 82 RFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEMVEVIYDKLTGRSRGFGFVTMSTKEEV 141 Query: 280 EKAISKLNGYGYDNLILHVEMAAPRP 203 E A + NGY D + V A P P Sbjct: 142 EAAEQQFNGYEIDGRAIRVN-AGPAP 166
>ROC2_NICPL (P49314) 31 kDa ribonucleoprotein, chloroplast precursor (CP-RBP31)| Length = 292 Score = 52.8 bits (125), Expect = 7e-07 Identities = 33/87 (37%), Positives = 41/87 (47%) Frame = -3 Query: 463 RRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHRED 284 R + N V V NLS + L ELF G V V D+ +G SRGFGFV + ++ Sbjct: 202 RSVDSSNRVYVGNLSWGVDDLALKELFSEQGNVVDAKVVYDRDSGRSRGFGFVTYSSAKE 261 Query: 283 AEKAISKLNGYGYDNLILHVEMAAPRP 203 AI LNG D + V A RP Sbjct: 262 VNDAIDSLNGIDLDGRSIRVSAAEERP 288 Score = 47.4 bits (111), Expect = 3e-05 Identities = 31/86 (36%), Positives = 41/86 (47%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 R +++ + V NL L LF G V V V D+ +G SRGFGFV +E+ Sbjct: 83 RFSEDLKLFVGNLPFSVDSAALAGLFERAGNVEIVEVIYDKLSGRSRGFGFVTMSTKEEV 142 Query: 280 EKAISKLNGYGYDNLILHVEMAAPRP 203 E A + NGY D + V A P P Sbjct: 143 EAAEQQFNGYEIDGRAIRVN-AGPAP 167
>NSR1_YEAST (P27476) Nuclear localization sequence-binding protein (P67)| Length = 414 Score = 52.8 bits (125), Expect = 7e-07 Identities = 27/75 (36%), Positives = 41/75 (54%) Frame = -3 Query: 427 NLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNGYG 248 NLS + + ELF G V V + +T +GFG+V F + EDA+KA+ L G Sbjct: 273 NLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEY 332 Query: 247 YDNLILHVEMAAPRP 203 DN + ++ ++PRP Sbjct: 333 IDNRPVRLDFSSPRP 347 Score = 45.1 bits (105), Expect = 1e-04 Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 15/104 (14%) Frame = -3 Query: 469 DMRRRNDENSVRVTNLSEDTREPD---------------LLELFRTFGAVSRVYVAVDQK 335 D DE S +E+T EP L + F G V V ++ Sbjct: 145 DAEEEEDEESSNKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERG 204 Query: 334 TGMSRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMAAPRP 203 T SRG+G+V+F ++ AEKAI ++ G D ++ +M+ +P Sbjct: 205 TDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKP 248
>SXL_DROME (P19339) Protein sex-lethal| Length = 354 Score = 52.4 bits (124), Expect = 9e-07 Identities = 29/83 (34%), Positives = 42/83 (50%) Frame = -3 Query: 457 RNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAE 278 R ++ V L +D + +L LFR G ++ + D KTG S G+ FV+F D++ Sbjct: 121 RASNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQ 180 Query: 277 KAISKLNGYGYDNLILHVEMAAP 209 +AI LNG N L V A P Sbjct: 181 RAIKVLNGITVRNKRLKVSYARP 203 Score = 43.9 bits (102), Expect = 3e-04 Identities = 22/64 (34%), Positives = 37/64 (57%) Frame = -3 Query: 448 ENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI 269 + ++ VTNL + L +F +G++ + + D+ TG RG FV + RE+A++AI Sbjct: 210 DTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAI 269 Query: 268 SKLN 257 S LN Sbjct: 270 SALN 273
>MRD1_ASPFU (Q4WJT7) Multiple RNA-binding domain-containing protein 1| Length = 825 Score = 52.4 bits (124), Expect = 9e-07 Identities = 24/78 (30%), Positives = 43/78 (55%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NL D E DL +F FG + ++VA D ++ S+GF +V ++ + A +A +L+G Sbjct: 305 VRNLPYDASESDLEPVFSKFGKIEEIHVAFDTRSTTSKGFAYVQYIEPDAAVQAYKELDG 364 Query: 253 YGYDNLILHVEMAAPRPT 200 + ++H+ A + T Sbjct: 365 KHFQGRLMHILPATAKKT 382 Score = 34.7 bits (78), Expect = 0.18 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 7/89 (7%) Frame = -3 Query: 505 LRAGAVHTDAGHDMRRRNDENSVR-------VTNLSEDTREPDLLELFRTFGAVSRVYVA 347 +RA DA + RR + + + NL + D+ LF +G + V V Sbjct: 675 VRASNKAMDAAEERRREDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVP 734 Query: 346 VDQKTGMSRGFGFVNFVHREDAEKAISKL 260 + +RGFGF +FV +AE A+ L Sbjct: 735 -KKFDRSARGFGFADFVSAREAENAMDAL 762 Score = 33.1 bits (74), Expect = 0.54 Identities = 24/69 (34%), Positives = 36/69 (52%), Gaps = 5/69 (7%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTF-GAVS-RVYVAVDQKTG---MSRGFGFVNFVHREDAEKAI 269 V NL+ T E+F+ G VS R+ D K +S GFGFV+F + A+ A+ Sbjct: 601 VKNLNFSTTNERFTEVFKPLDGFVSARIKTKPDPKRPGKTLSMGFGFVDFRTKAQAQAAL 660 Query: 268 SKLNGYGYD 242 + ++GY D Sbjct: 661 AAMDGYKLD 669
>PABPA_XENLA (P20965) Polyadenylate-binding protein 1-A (Poly(A)-binding protein| 1-A) (Cytoplasmic poly(A)-binding protein 1-A) (PABP-A) (PABP 1-A) (xPABP1-A) Length = 633 Score = 52.4 bits (124), Expect = 9e-07 Identities = 26/69 (37%), Positives = 39/69 (56%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 R + +V + N +D + L E+F +G V V D G S+GFGFV+F EDA Sbjct: 186 RAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDN-GKSKGFGFVSFERHEDA 244 Query: 280 EKAISKLNG 254 +KA+ ++NG Sbjct: 245 QKAVDEMNG 253 Score = 43.5 bits (101), Expect = 4e-04 Identities = 23/69 (33%), Positives = 38/69 (55%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 R++ ++ + NL + L + F FG + V D+ S+G+GFV+F +E A Sbjct: 94 RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAA 151 Query: 280 EKAISKLNG 254 E+AI K+NG Sbjct: 152 ERAIDKMNG 160 Score = 40.4 bits (93), Expect = 0.003 Identities = 25/73 (34%), Positives = 40/73 (54%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NL + + L + F FG ++ V ++ G S+GFGFV F E+A KA++++NG Sbjct: 298 VKNLDDGIDDERLRKEFLPFGTITSAKVMMEG--GRSKGFGFVCFSSPEEATKAVTEMNG 355 Query: 253 YGYDNLILHVEMA 215 L+V +A Sbjct: 356 RIVATKPLYVALA 368 Score = 40.0 bits (92), Expect = 0.004 Identities = 22/62 (35%), Positives = 32/62 (51%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 S+ V +L +D E L E F G + + V D T S G+ +VNF DAE+A+ Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 262 LN 257 +N Sbjct: 72 MN 73
>MRD1_SCHPO (O13620) Multiple RNA-binding domain-containing protein 1| Length = 833 Score = 52.4 bits (124), Expect = 9e-07 Identities = 27/79 (34%), Positives = 45/79 (56%) Frame = -3 Query: 427 NLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNGYG 248 NL+ E DL LF FG + +V++ +D+KT +GF +++F +DA +A +L+ Sbjct: 329 NLTYSCAEDDLKSLFGPFGQLEQVHMPIDKKTNNPKGFAYIDFHDADDAVRAYLELDAKP 388 Query: 247 YDNLILHVEMAAPRPT*LL 191 + +LHV A R + LL Sbjct: 389 FQGRLLHVLPAKARSSILL 407 Score = 34.3 bits (77), Expect = 0.24 Identities = 24/84 (28%), Positives = 45/84 (53%), Gaps = 5/84 (5%) Frame = -3 Query: 451 DENSVRVTNLSEDTREPDLLELFRTF-GAVSRVYVAVD--QKTG--MSRGFGFVNFVHRE 287 D ++ V NL+ T++ + ++F+ G +S V A ++ G +S GFGFV F + Sbjct: 617 DTATIYVKNLNFSTKQEEFQKVFKPLEGYLSAVIRAKPDPKRPGKYLSMGFGFVEFKDKA 676 Query: 286 DAEKAISKLNGYGYDNLILHVEMA 215 A A+ +NG+ D L ++++ Sbjct: 677 SAVAAMHAMNGFVLDGHKLEIKLS 700 Score = 33.5 bits (75), Expect = 0.41 Identities = 15/27 (55%), Positives = 19/27 (70%) Frame = -3 Query: 337 KTGMSRGFGFVNFVHREDAEKAISKLN 257 K G+SR F F+ F + EDA+KAI LN Sbjct: 41 KEGVSRRFAFIGFKNEEDADKAIRYLN 67
>GRP2_ARATH (Q9SVM8) Glycine-rich RNA-binding protein 2, mitochondrial| precursor (AtGRP2) Length = 158 Score = 51.6 bits (122), Expect = 1e-06 Identities = 31/78 (39%), Positives = 42/78 (53%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 + LS T + L + F FG V V VD++TG SRGFGFVNF A AIS+++G Sbjct: 39 IGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDG 98 Query: 253 YGYDNLILHVEMAAPRPT 200 + + V A RP+ Sbjct: 99 KELNGRHIRVNPANDRPS 116
>GBP2_YEAST (P25555) Single-strand telomeric DNA-binding protein GBP2| (G-strand-binding protein 2) (RAP1 localization factor 6) Length = 427 Score = 51.6 bits (122), Expect = 1e-06 Identities = 35/89 (39%), Positives = 43/89 (48%) Frame = -3 Query: 469 DMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHR 290 D +RN ENS+ V NL+ D DL ELF T G V V + G RG G V F Sbjct: 114 DATKRNFENSIFVRNLTFDCTPEDLKELFGTVGEV--VEADIITSKGHHRGMGTVEFTKN 171 Query: 289 EDAEKAISKLNGYGYDNLILHVEMAAPRP 203 E + AISK +G + + L V P P Sbjct: 172 ESVQDAISKFDGALFMDRKLMVRQDNPPP 200 Score = 38.1 bits (87), Expect = 0.017 Identities = 22/72 (30%), Positives = 32/72 (44%) Frame = -3 Query: 430 TNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNGY 251 +NL T DL +LF G ++ + Q+ G G V + + DA+ I KLN Y Sbjct: 354 SNLPFSTARSDLFDLFGPIGKINNAELK-PQENGQPTGVAVVEYENLVDADFCIQKLNNY 412 Query: 250 GYDNLILHVEMA 215 Y L + A Sbjct: 413 NYGGCSLQISYA 424 Score = 34.7 bits (78), Expect = 0.18 Identities = 23/72 (31%), Positives = 34/72 (47%) Frame = -3 Query: 439 VRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKL 260 V + NL L ++F+ G V R V +D G SRGFG V + ++ +AI Sbjct: 221 VFIINLPYSMNWQSLKDMFKECGHVLRADVELDFN-GFSRGFGSVIYPTEDEMIRAIDTF 279 Query: 259 NGYGYDNLILHV 224 NG + +L V Sbjct: 280 NGMEVEGRVLEV 291
>MRD1_ASHGO (Q75A83) Multiple RNA-binding domain-containing protein 1| Length = 838 Score = 51.6 bits (122), Expect = 1e-06 Identities = 27/76 (35%), Positives = 41/76 (53%) Frame = -3 Query: 427 NLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNGYG 248 N+ D E D +LF +G + V+VAVD +TG S+GF +V F E A A +L+ Sbjct: 307 NILYDATEEDFKQLFSPYGELEEVHVAVDTRTGQSKGFAYVLFKDPEHAANAYIELDKQI 366 Query: 247 YDNLILHVEMAAPRPT 200 + +LH+ A + T Sbjct: 367 FQGRLLHILPADAKKT 382 Score = 37.7 bits (86), Expect = 0.022 Identities = 22/69 (31%), Positives = 35/69 (50%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 ++ + V NL + D+ ELF +FG + V V + +RGF FV F+ +A Sbjct: 707 KKKISGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVP-KKFDKSARGFAFVEFLLPSEA 765 Query: 280 EKAISKLNG 254 E A+ +L G Sbjct: 766 ENAMDQLQG 774 Score = 31.6 bits (70), Expect = 1.6 Identities = 17/44 (38%), Positives = 22/44 (50%) Frame = -3 Query: 346 VDQKTGMSRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMA 215 V K+G SR F F+ + +DA AI NG D + V MA Sbjct: 43 VKDKSGNSRRFAFIGYRSEQDAFDAIEYFNGSFIDTARIEVAMA 86
>MRD1_EMENI (Q5BGA9) Multiple RNA-binding domain-containing protein 1| Length = 819 Score = 51.2 bits (121), Expect = 2e-06 Identities = 25/78 (32%), Positives = 44/78 (56%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NLS +T+E +L +F FG + ++VA D + S+GF +V + + A +A L+G Sbjct: 299 VRNLSYETKESELEPVFSPFGKIEEIHVAFDTRFTTSKGFAYVQYADPDAAVEAYRNLDG 358 Query: 253 YGYDNLILHVEMAAPRPT 200 + +LH+ A+ + T Sbjct: 359 KIFQGRLLHILPASQKKT 376 Score = 37.7 bits (86), Expect = 0.022 Identities = 27/75 (36%), Positives = 38/75 (50%), Gaps = 5/75 (6%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTF-GAVS-RVYVAVDQKTG---MSRGFGFVNFVHREDAEKAI 269 + NL+ T L+E FR G VS R+ D K +S GFGF +F + A+ A+ Sbjct: 596 IKNLNFSTTNQSLIEAFRPLDGFVSARIKTKPDPKNPGQTLSMGFGFADFKTKAQAQAAL 655 Query: 268 SKLNGYGYDNLILHV 224 + +NGY D L V Sbjct: 656 AVMNGYTLDRHTLVV 670 Score = 33.5 bits (75), Expect = 0.41 Identities = 24/89 (26%), Positives = 39/89 (43%), Gaps = 7/89 (7%) Frame = -3 Query: 505 LRAGAVHTDAGHDMRRRNDENSVR-------VTNLSEDTREPDLLELFRTFGAVSRVYVA 347 +RA DA + R+ + + + NL + D+ LF +G + V V Sbjct: 670 VRASHKGMDAAEERRKEDTAKKIAARRTKIIIKNLPFQATKKDVRSLFGAYGQLRSVRVP 729 Query: 346 VDQKTGMSRGFGFVNFVHREDAEKAISKL 260 + +RGFGF +FV +AE A+ L Sbjct: 730 -KKFDRSARGFGFADFVSAREAENAMDAL 757
>MRD1_YEAST (Q06106) Multiple RNA-binding domain-containing protein 1| Length = 887 Score = 51.2 bits (121), Expect = 2e-06 Identities = 28/93 (30%), Positives = 49/93 (52%) Frame = -3 Query: 502 RAGAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMS 323 RA TD + + N + + N+ ++E D +LF FG + V+VA+D +TG S Sbjct: 326 RAVPQKTDEELAIEKINQTGRLFLRNILYTSKEEDFRKLFSPFGELEEVHVALDTRTGQS 385 Query: 322 RGFGFVNFVHREDAEKAISKLNGYGYDNLILHV 224 +GF +V F ++A A +L+ + +LH+ Sbjct: 386 KGFAYVLFKDSKNAVNAYVELDKQIFQGRLLHI 418 Score = 39.3 bits (90), Expect = 0.007 Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 1/78 (1%) Frame = -3 Query: 484 TDAGHDMRRRNDENS-VRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGF 308 + +G+ + N ++ + V NL + D+ ELF +FG + V V + +RGF F Sbjct: 749 SQSGNTKTKSNKKSGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVP-KKFDKSARGFAF 807 Query: 307 VNFVHREDAEKAISKLNG 254 V F+ ++AE A+ +L+G Sbjct: 808 VEFLLPKEAENAMDQLHG 825 Score = 30.8 bits (68), Expect = 2.7 Identities = 15/41 (36%), Positives = 22/41 (53%) Frame = -3 Query: 337 KTGMSRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMA 215 + G SR FGF+ + + EDA A+ NG + + V MA Sbjct: 52 RNGESRRFGFIGYRNEEDAFDAVEYFNGSFINTSKIEVSMA 92
>ROC1_ARATH (Q9ZUU4) Putative ribonucleoprotein At2g37220, chloroplast| precursor Length = 289 Score = 51.2 bits (121), Expect = 2e-06 Identities = 30/77 (38%), Positives = 36/77 (46%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NL + L +LF + G V V V D+ TG SRGFGFV + E A + NG Sbjct: 95 VGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNG 154 Query: 253 YGYDNLILHVEMAAPRP 203 Y D L V P P Sbjct: 155 YELDGRPLRVNAGPPPP 171 Score = 47.8 bits (112), Expect = 2e-05 Identities = 29/81 (35%), Positives = 39/81 (48%) Frame = -3 Query: 445 NSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAIS 266 N V V NLS + L LF G V V D+ +G S+GFGFV + ++ + AI Sbjct: 204 NRVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIK 263 Query: 265 KLNGYGYDNLILHVEMAAPRP 203 L+G D + V A RP Sbjct: 264 SLDGADLDGRQIRVSEAEARP 284
>MK67I_XENLA (Q7SYS2) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 278 Score = 50.8 bits (120), Expect = 2e-06 Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 5/93 (5%) Frame = -3 Query: 472 HDMRRRNDENS-----VRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGF 308 HD+RR+ N+ + + ++ + EP L E F FG V+R+ ++ +KTG S+G+ + Sbjct: 27 HDIRRKRKANALTPGVIYIGHIPKSLIEPQLQEYFNQFGTVTRLRLSRSKKTGNSKGYAY 86 Query: 307 VNFVHREDAEKAISKLNGYGYDNLILHVEMAAP 209 V + E A+ +N Y + +L E P Sbjct: 87 VEYECDEVAKIVADTMNNYLFCERLLKCEFVTP 119
>PABP4_HUMAN (Q13310) Polyadenylate-binding protein 4 (Poly(A)-binding protein| 4) (PABP 4) (Inducible poly(A)-binding protein) (iPABP) (Activated-platelet protein 1) (APP-1) Length = 644 Score = 50.8 bits (120), Expect = 2e-06 Identities = 29/76 (38%), Positives = 40/76 (52%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 +V + N E+ + L ELF FG V V D G S+GFGFV++ EDA KA+ + Sbjct: 192 NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPN-GKSKGFGFVSYEKHEDANKAVEE 250 Query: 262 LNGYGYDNLILHVEMA 215 +NG I+ V A Sbjct: 251 MNGKEISGKIIFVGRA 266 Score = 42.7 bits (99), Expect = 7e-04 Identities = 24/73 (32%), Positives = 42/73 (57%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 + NL + + L + F FG+++ V ++ G S+GFGFV F E+A KA++++NG Sbjct: 298 IKNLDDTIDDEKLRKEFSPFGSITSAKVMLED--GRSKGFGFVCFSSPEEATKAVTEMNG 355 Query: 253 YGYDNLILHVEMA 215 + L+V +A Sbjct: 356 RIVGSKPLYVALA 368 Score = 41.6 bits (96), Expect = 0.002 Identities = 23/69 (33%), Positives = 37/69 (53%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 R++ +V + NL + L + F FG + V D+ S+G+ FV+F +E A Sbjct: 94 RKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAA 151 Query: 280 EKAISKLNG 254 +KAI K+NG Sbjct: 152 DKAIEKMNG 160 Score = 39.7 bits (91), Expect = 0.006 Identities = 23/62 (37%), Positives = 31/62 (50%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 S+ V +L D E L E F G V + V D T S G+ +VNF DAE+A+ Sbjct: 12 SLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71 Query: 262 LN 257 +N Sbjct: 72 MN 73
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 50.8 bits (120), Expect = 2e-06 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 10/97 (10%) Frame = -3 Query: 475 GHDMRRRNDENSVR----------VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGM 326 GH + RR ++ V + NL + E + +LF FG ++ + + DQ Sbjct: 241 GHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQND-K 299 Query: 325 SRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMA 215 RGFGFVN+ + E A+KA+ +LN Y L+V A Sbjct: 300 PRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRA 336 Score = 46.6 bits (109), Expect = 5e-05 Identities = 25/62 (40%), Positives = 34/62 (54%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 S+ V L E L ELF + G V+ + V D T S G+ +VNF + ED EKA+ + Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140 Query: 262 LN 257 LN Sbjct: 141 LN 142 Score = 41.6 bits (96), Expect = 0.002 Identities = 19/59 (32%), Positives = 35/59 (59%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLN 257 + NL ++ + L F FG ++ + D++ G S+GFGFV + E+A KA++++N Sbjct: 368 IKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQ-GKSKGFGFVCYTTPEEANKAVTEMN 425 Score = 39.3 bits (90), Expect = 0.007 Identities = 24/69 (34%), Positives = 35/69 (50%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 R+ +V + NL L + F FG + VAVD+ G ++G+GFV+F E A Sbjct: 163 RKMGTGNVFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDE-LGNAKGYGFVHFDSVESA 221 Query: 280 EKAISKLNG 254 AI +NG Sbjct: 222 NAAIEHVNG 230
>TRA2B_RAT (P62997) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (RA301) Length = 288 Score = 50.4 bits (119), Expect = 3e-06 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 8/99 (8%) Frame = -3 Query: 487 HTDAGHDMRRRNDENSVR--------VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKT 332 H+ + RRR+ N V LS T E DL E+F +G ++ V + DQ++ Sbjct: 96 HSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQS 155 Query: 331 GMSRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMA 215 SRGF FV F + +DA++A + NG D + V+ + Sbjct: 156 RRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 194
>TRA2B_MOUSE (P62996) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) (Silica-induced gene 41 protein) (SIG-41) Length = 288 Score = 50.4 bits (119), Expect = 3e-06 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 8/99 (8%) Frame = -3 Query: 487 HTDAGHDMRRRNDENSVR--------VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKT 332 H+ + RRR+ N V LS T E DL E+F +G ++ V + DQ++ Sbjct: 96 HSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQS 155 Query: 331 GMSRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMA 215 SRGF FV F + +DA++A + NG D + V+ + Sbjct: 156 RRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 194
>TRA2B_HUMAN (P62995) Arginine/serine-rich splicing factor 10| (Transformer-2-beta) (HTRA2-beta) (Transformer 2 protein homolog) Length = 288 Score = 50.4 bits (119), Expect = 3e-06 Identities = 32/99 (32%), Positives = 50/99 (50%), Gaps = 8/99 (8%) Frame = -3 Query: 487 HTDAGHDMRRRNDENSVR--------VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKT 332 H+ + RRR+ N V LS T E DL E+F +G ++ V + DQ++ Sbjct: 96 HSHSPMSTRRRHVGNRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQS 155 Query: 331 GMSRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMA 215 SRGF FV F + +DA++A + NG D + V+ + Sbjct: 156 RRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFS 194
>ROC3_NICSY (P19682) 28 kDa ribonucleoprotein, chloroplast precursor (28RNP)| Length = 276 Score = 50.4 bits (119), Expect = 3e-06 Identities = 29/83 (34%), Positives = 44/83 (53%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 +++ + V NL D L +LF+ G V V +++T SRGFGFV E+A+K Sbjct: 94 SEDAKLFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADK 153 Query: 274 AISKLNGYGYDNLILHVEMAAPR 206 A+ + Y + +L V AAPR Sbjct: 154 AVELYSQYDLNGRLLTVNKAAPR 176 Score = 47.0 bits (110), Expect = 4e-05 Identities = 26/79 (32%), Positives = 39/79 (49%) Frame = -3 Query: 439 VRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKL 260 + V N+ D + L ++F G V V D+++G SRGFGFV + +AI+ L Sbjct: 193 IYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANL 252 Query: 259 NGYGYDNLILHVEMAAPRP 203 +G D + V A RP Sbjct: 253 DGQTLDGRTIRVNAAEERP 271
>TIA1_HUMAN (P31483) Nucleolysin TIA-1 isoform p40 (RNA-binding protein TIA-1)| (p40-TIA-1) [Contains: Nucleolysin TIA-1 isoform p15 (p15-TIA-1)] Length = 386 Score = 50.4 bits (119), Expect = 3e-06 Identities = 28/87 (32%), Positives = 42/87 (48%) Frame = -3 Query: 463 RRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHRED 284 +R + V V +LS D+ F FG +S V D TG S+G+GFV+F ++ D Sbjct: 100 QRSQNHFHVFVGDLSPQITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWD 159 Query: 283 AEKAISKLNGYGYDNLILHVEMAAPRP 203 AE AI ++ G + A +P Sbjct: 160 AENAIQQMGGQWLGGRQIRTNWATRKP 186 Score = 29.6 bits (65), Expect = 5.9 Identities = 19/60 (31%), Positives = 28/60 (46%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NLS D E +L+LF G + +D T + + FV F A A++ +NG Sbjct: 11 VGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMNG 68
>YDC1_SCHPO (Q10422) Hypothetical RNA-binding protein C25G10.01 in chromosome I| Length = 297 Score = 50.4 bits (119), Expect = 3e-06 Identities = 26/77 (33%), Positives = 44/77 (57%) Frame = -3 Query: 445 NSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAIS 266 N + V+ ++ +E +L ++F FG V+ V + + T SRGFGF++F E+A AI Sbjct: 101 NDLFVSGIASRMQEDELQQIFSKFGTVTHVRIMREPVTKASRGFGFLSFSTVEEATSAID 160 Query: 265 KLNGYGYDNLILHVEMA 215 LN + +L+V+ A Sbjct: 161 NLNSQEFYGRVLNVQKA 177
>RBM19_HUMAN (Q9Y4C8) Probable RNA-binding protein 19 (RNA-binding motif protein| 19) Length = 960 Score = 50.4 bits (119), Expect = 3e-06 Identities = 25/70 (35%), Positives = 40/70 (57%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NL + E DL +LF +G +S ++ +D T +GF F+ F+ E A KA S+++G Sbjct: 406 VRNLPYTSTEEDLEKLFSKYGPLSELHYPIDSLTKKPKGFAFITFMFPEHAVKAYSEVDG 465 Query: 253 YGYDNLILHV 224 + +LHV Sbjct: 466 QVFQGRMLHV 475 Score = 44.7 bits (104), Expect = 2e-04 Identities = 26/87 (29%), Positives = 44/87 (50%), Gaps = 1/87 (1%) Frame = -3 Query: 517 VAPRLRAGAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQ 338 ++ R AV + R+ + + V N+ ++ ELF TFG + V + Sbjct: 808 ISERATKPAVTLARKKQVPRKQTTSKILVRNIPFQAHSREIRELFSTFGELKTVRLPKKM 867 Query: 337 K-TGMSRGFGFVNFVHREDAEKAISKL 260 TG RGFGFV+F+ ++DA++A + L Sbjct: 868 TGTGTHRGFGFVDFLTKQDAKRAFNAL 894
>MRD1_CANGA (Q6FXP4) Multiple RNA-binding domain-containing protein 1| Length = 861 Score = 49.7 bits (117), Expect = 6e-06 Identities = 24/68 (35%), Positives = 40/68 (58%) Frame = -3 Query: 427 NLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNGYG 248 N+ + E D +LF +G + V+VAVD +TG S+GF +V F E+A +A +L+ Sbjct: 331 NILYSSTEDDFKKLFSPYGELKEVHVAVDTRTGNSKGFAYVLFAKPEEAVQAYIELDKQI 390 Query: 247 YDNLILHV 224 + +LH+ Sbjct: 391 FQGRLLHI 398 Score = 43.5 bits (101), Expect = 4e-04 Identities = 25/76 (32%), Positives = 40/76 (52%) Frame = -3 Query: 481 DAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVN 302 +AG +++ + V NL + D+ ELF +FG + V V + +RGF FV Sbjct: 726 NAGSQEKKKAKNGKIIVKNLPFEATRKDVFELFNSFGQLKSVRVP-KKFDKSARGFAFVE 784 Query: 301 FVHREDAEKAISKLNG 254 FV ++AE A+ +L G Sbjct: 785 FVLPKEAENAMDQLQG 800
>A2BP1_HUMAN (Q9NWB1) Ataxin-2-binding protein 1| Length = 397 Score = 49.7 bits (117), Expect = 6e-06 Identities = 28/97 (28%), Positives = 49/97 (50%) Frame = -3 Query: 496 GAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRG 317 G T + ++ + V+N+ R+PDL ++F FG + V + +++ S+G Sbjct: 100 GQPQTQPSENTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKG 157 Query: 316 FGFVNFVHREDAEKAISKLNGYGYDNLILHVEMAAPR 206 FGFV F + DA++A KL+G + + V A R Sbjct: 158 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 194
>RBM9_HUMAN (O43251) RNA-binding protein 9 (RNA-binding motif protein 9)| (Hexaribonucleotide-binding protein 2) (Repressor of tamoxifen transcriptional activity) Length = 390 Score = 49.7 bits (117), Expect = 6e-06 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 8/105 (7%) Frame = -3 Query: 496 GAVHTDAGHDMRRRNDENS--------VRVTNLSEDTREPDLLELFRTFGAVSRVYVAVD 341 G TD G + ++ ENS + V+N+ R+PDL ++F FG + V + + Sbjct: 97 GGAQTD-GQQSQTQSSENSESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFN 155 Query: 340 QKTGMSRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMAAPR 206 ++ S+GFGFV F + DA++A KL+G + + V A R Sbjct: 156 ERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 198
>TIAR_MOUSE (P70318) Nucleolysin TIAR (TIA-1-related protein)| Length = 392 Score = 49.3 bits (116), Expect = 7e-06 Identities = 27/79 (34%), Positives = 39/79 (49%) Frame = -3 Query: 439 VRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKL 260 V V +LS + D+ F FG +S V D TG S+G+GFV+F ++ DAE AI + Sbjct: 116 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 175 Query: 259 NGYGYDNLILHVEMAAPRP 203 G + A +P Sbjct: 176 GGQWLGGRQIRTNWATRKP 194
>TIAR_HUMAN (Q01085) Nucleolysin TIAR (TIA-1-related protein)| Length = 375 Score = 49.3 bits (116), Expect = 7e-06 Identities = 27/79 (34%), Positives = 39/79 (49%) Frame = -3 Query: 439 VRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKL 260 V V +LS + D+ F FG +S V D TG S+G+GFV+F ++ DAE AI + Sbjct: 99 VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHM 158 Query: 259 NGYGYDNLILHVEMAAPRP 203 G + A +P Sbjct: 159 GGQWLGGRQIRTNWATRKP 177 Score = 29.6 bits (65), Expect = 5.9 Identities = 18/60 (30%), Positives = 28/60 (46%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NLS D E +L+LF G + + + + + FV F DA A++ +NG Sbjct: 13 VGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNG 70
>A2BP1_MOUSE (Q9JJ43) Ataxin-2-binding protein 1| Length = 396 Score = 49.3 bits (116), Expect = 7e-06 Identities = 28/97 (28%), Positives = 49/97 (50%) Frame = -3 Query: 496 GAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRG 317 G T + ++ + V+N+ R+PDL ++F FG + V + +++ S+G Sbjct: 99 GQPQTQPSENTESKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKG 156 Query: 316 FGFVNFVHREDAEKAISKLNGYGYDNLILHVEMAAPR 206 FGFV F + DA++A KL+G + + V A R Sbjct: 157 FGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 193
>TADBP_HUMAN (Q13148) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 49.3 bits (116), Expect = 7e-06 Identities = 28/57 (49%), Positives = 31/57 (54%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 V L T E DL E F TFG V V V D KTG S+GFGFV F E K +S+ Sbjct: 108 VLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 164
>ROAA_HUMAN (Q99729) Heterogeneous nuclear ribonucleoprotein A/B (hnRNP A/B)| (APOBEC-1-binding protein 1) (ABBP-1) Length = 331 Score = 48.9 bits (115), Expect = 9e-06 Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 2/85 (2%) Frame = -3 Query: 511 PRLRAG--AVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQ 338 PR RAG D + + D + V LS DT + DL + F FG V + +D Sbjct: 44 PRPRAGIRTAPRDQINASKNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDP 103 Query: 337 KTGMSRGFGFVNFVHREDAEKAISK 263 TG SRGFGF+ F EK + + Sbjct: 104 NTGRSRGFGFILFKDAASVEKVLDQ 128
>RX21_DROME (Q24491) RNA-binding protein Rsf1 (RNA-binding protein Rox21)| Length = 197 Score = 48.9 bits (115), Expect = 9e-06 Identities = 30/79 (37%), Positives = 43/79 (54%) Frame = -3 Query: 439 VRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKL 260 V V NL++ ++ DL F +G ++ V++A + GF FV F HR+DAEKA L Sbjct: 9 VYVGNLTDKVKKDDLEGEFTKYGKLNSVWIAFNPP-----GFAFVEFEHRDDAEKACDIL 63 Query: 259 NGYGYDNLILHVEMAAPRP 203 NG L VE++ RP Sbjct: 64 NGSELLGSQLRVEISKGRP 82
>ROC4_NICSY (P19683) 31 kDa ribonucleoprotein, chloroplast precursor| Length = 315 Score = 48.9 bits (115), Expect = 9e-06 Identities = 30/76 (39%), Positives = 36/76 (47%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NL D L LF G V V ++ T SRGFGFV E+AEKA+ N Sbjct: 140 VGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNR 199 Query: 253 YGYDNLILHVEMAAPR 206 Y + +L V AA R Sbjct: 200 YDVNGRLLTVNKAARR 215 Score = 46.2 bits (108), Expect = 6e-05 Identities = 30/86 (34%), Positives = 40/86 (46%), Gaps = 2/86 (2%) Frame = -3 Query: 457 RNDENSVR--VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHRED 284 R E S R V N+ + L +LF G V V D++TG SRGFGFV + Sbjct: 224 RTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAE 283 Query: 283 AEKAISKLNGYGYDNLILHVEMAAPR 206 AI+ L+G D + V +A R Sbjct: 284 MSDAIANLDGQSLDGRTIRVNVAEDR 309
>RNPC2_MOUSE (Q8VH51) RNA-binding region-containing protein 2 (Coactivator of| activating protein 1 and estrogen receptors) (Coactivator of AP-1 and ERs) (Transcription coactivator CAPER) Length = 530 Score = 48.9 bits (115), Expect = 9e-06 Identities = 28/93 (30%), Positives = 44/93 (47%) Frame = -3 Query: 529 KGSYVAPRLRAGAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYV 350 KGS RL G++H + DM R +F FG + + + Sbjct: 244 KGSAGPMRLYVGSLHFNITEDMLRG----------------------IFEPFGRIESIQL 281 Query: 349 AVDQKTGMSRGFGFVNFVHREDAEKAISKLNGY 251 +D +TG S+G+GF+ F E A+KA+ +LNG+ Sbjct: 282 MMDSETGRSKGYGFITFSDSECAKKALEQLNGF 314
>RNPC2_HUMAN (Q14498) RNA-binding region-containing protein 2 (Hepatocellular| carcinoma protein 1) (Splicing factor HCC1) Length = 530 Score = 48.9 bits (115), Expect = 9e-06 Identities = 28/93 (30%), Positives = 44/93 (47%) Frame = -3 Query: 529 KGSYVAPRLRAGAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYV 350 KGS RL G++H + DM R +F FG + + + Sbjct: 244 KGSAGPMRLYVGSLHFNITEDMLRG----------------------IFEPFGRIESIQL 281 Query: 349 AVDQKTGMSRGFGFVNFVHREDAEKAISKLNGY 251 +D +TG S+G+GF+ F E A+KA+ +LNG+ Sbjct: 282 MMDSETGRSKGYGFITFSDSECAKKALEQLNGF 314
>RSP3_CAEEL (Q9NEW6) Probable splicing factor, arginine/serine-rich 3 (CeSF2)| (CeSF2/ASF) Length = 258 Score = 48.5 bits (114), Expect = 1e-05 Identities = 27/81 (33%), Positives = 41/81 (50%) Frame = -3 Query: 463 RRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHRED 284 R +++ V V NL D RE ++ ++F +G + V D K+G F FV F D Sbjct: 3 RGGSEDQKVYVGNLPGDVREKEVEDIFHKYGRIKYV----DIKSGRGPAFAFVEFEDHRD 58 Query: 283 AEKAISKLNGYGYDNLILHVE 221 AE A+ +GY +D + VE Sbjct: 59 AEDAVRARDGYEFDGRRIRVE 79
>MRD1_KLULA (Q6CQR6) Multiple RNA-binding domain-containing protein 1| Length = 878 Score = 48.5 bits (114), Expect = 1e-05 Identities = 22/81 (27%), Positives = 45/81 (55%) Frame = -3 Query: 466 MRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHRE 287 +++ + + + N+ E D +LF +G + V++AVD +TG S+GF +V F + + Sbjct: 323 LKKIRETGRLFLRNILYTATEDDFRKLFSPYGELEEVHIAVDTRTGQSKGFAYVLFKNAD 382 Query: 286 DAEKAISKLNGYGYDNLILHV 224 +A A +L+ + +LH+ Sbjct: 383 NAATAFVELDKQIFQGRLLHI 403 Score = 43.5 bits (101), Expect = 4e-04 Identities = 27/83 (32%), Positives = 44/83 (53%) Frame = -3 Query: 502 RAGAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMS 323 R G T+A +++N + + V NL + D+ ELF +FG + V V + + Sbjct: 734 RQGTSTTNASSKKKKKN-QGKIIVKNLPFEATRKDVFELFSSFGQLKSVRVP-KKFDKSA 791 Query: 322 RGFGFVNFVHREDAEKAISKLNG 254 RGF FV F+ ++AE A+ +L G Sbjct: 792 RGFAFVEFLLPKEAENAMDQLQG 814 Score = 29.3 bits (64), Expect = 7.8 Identities = 15/41 (36%), Positives = 20/41 (48%) Frame = -3 Query: 337 KTGMSRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMA 215 + G SR F F+ F EDA ++ NG D + V MA Sbjct: 48 RDGESRRFAFIGFRDEEDAFDCVNYFNGTFVDTSKIEVSMA 88
>NUCL_MESAU (P08199) Nucleolin (Protein C23)| Length = 713 Score = 48.1 bits (113), Expect = 2e-05 Identities = 32/90 (35%), Positives = 46/90 (51%) Frame = -3 Query: 475 GHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFV 296 G R ++ V LSEDT E L E F G+V R + D++TG S+GFGFV+F Sbjct: 561 GSPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFN 617 Query: 295 HREDAEKAISKLNGYGYDNLILHVEMAAPR 206 EDA+ A + D + ++ A P+ Sbjct: 618 SEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 647 Score = 39.3 bits (90), Expect = 0.007 Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 1/106 (0%) Frame = -3 Query: 451 DENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQ-KTGMSRGFGFVNFVHREDAEK 275 + ++ ++NLS E L E+F ++ V Q + G S+G+ F+ F EDA++ Sbjct: 483 ESKTLVLSNLSYSATEETLQEVFE-----KATFIKVPQNQQGKSKGYAFIEFASFEDAKE 537 Query: 274 AISKLNGYGYDNLILHVEMAAPRPT*LLPTKHSDIPSVMVMLSALS 137 A++ N + + +E+ PR + P S PS + + LS Sbjct: 538 ALNSCNKMEIEGRTIRLELQGPRGS---PNARSQ-PSKTLFVKGLS 579 Score = 32.3 bits (72), Expect = 0.92 Identities = 14/26 (53%), Positives = 19/26 (73%) Frame = -3 Query: 346 VDQKTGMSRGFGFVNFVHREDAEKAI 269 VD +TG +R FG+V+F ED EKA+ Sbjct: 339 VDVRTGTNRKFGYVDFESAEDLEKAL 364 Score = 32.0 bits (71), Expect = 1.2 Identities = 19/78 (24%), Positives = 35/78 (44%) Frame = -3 Query: 475 GHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFV 296 G D ++ ++ NLS + E +L E+F + + + + G S+G ++ F Sbjct: 383 GRDSKKVRAARTLLAKNLSFNITEDELKEVFE-----DALEIRLVSQDGKSKGIAYIEFK 437 Query: 295 HREDAEKAISKLNGYGYD 242 DAEK + + G D Sbjct: 438 SEADAEKNLEEKQGAEID 455
>FOX1_CAEEL (Q10572) Sex determination protein fox-1 (Feminizing locus on X| protein 1) Length = 415 Score = 48.1 bits (113), Expect = 2e-05 Identities = 31/93 (33%), Positives = 49/93 (52%) Frame = -3 Query: 484 TDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFV 305 T +G D +R + V+N+ R+PDL +F FG VS V + +++ S+GFGFV Sbjct: 145 TSSGPDGPKR-----LHVSNIPFRFRDPDLKTMFEKFGVVSDVEIIFNERG--SKGFGFV 197 Query: 304 NFVHREDAEKAISKLNGYGYDNLILHVEMAAPR 206 +DAE+A +L+G + + V A R Sbjct: 198 TMERPQDAERARQELHGSMIEGRKIEVNCATAR 230
>ROA0_HUMAN (Q13151) Heterogeneous nuclear ribonucleoprotein A0 (hnRNP A0)| Length = 305 Score = 48.1 bits (113), Expect = 2e-05 Identities = 23/54 (42%), Positives = 32/54 (59%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKA 272 V L D E DL+E F FG V + + D+++G RGFGFV F + + A+KA Sbjct: 102 VGGLKGDVAEGDLIEHFSQFGTVEKAEIIADKQSGKKRGFGFVYFQNHDAADKA 155 Score = 38.9 bits (89), Expect = 0.010 Identities = 25/93 (26%), Positives = 45/93 (48%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 + L+ T E L F FG ++ V V+ +T SR FGFV + + E+A+ A++ + Sbjct: 11 IGGLNVQTSESGLRGHFEAFGTLTDCVVVVNPQTKRSRCFGFVTYSNVEEADAAMA-ASP 69 Query: 253 YGYDNLILHVEMAAPRPT*LLPTKHSDIPSVMV 155 + D + ++ A R P H+ + + V Sbjct: 70 HAVDGNTVELKRAVSREDSARPGAHAKVKKLFV 102
>NUCL_RAT (P13383) Nucleolin (Protein C23)| Length = 712 Score = 48.1 bits (113), Expect = 2e-05 Identities = 32/90 (35%), Positives = 46/90 (51%) Frame = -3 Query: 475 GHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFV 296 G R ++ V LSEDT E L E F G+V R + D++TG S+GFGFV+F Sbjct: 564 GSPNARSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFN 620 Query: 295 HREDAEKAISKLNGYGYDNLILHVEMAAPR 206 EDA+ A + D + ++ A P+ Sbjct: 621 SEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 650 Score = 38.9 bits (89), Expect = 0.010 Identities = 28/106 (26%), Positives = 50/106 (47%), Gaps = 1/106 (0%) Frame = -3 Query: 451 DENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKT-GMSRGFGFVNFVHREDAEK 275 + ++ ++NLS E L E+F ++ V Q G S+G+ F+ F EDA++ Sbjct: 486 ESKTLVLSNLSYSATEETLQEVFE-----KATFIKVPQNPHGKSKGYAFIEFASFEDAKE 540 Query: 274 AISKLNGYGYDNLILHVEMAAPRPT*LLPTKHSDIPSVMVMLSALS 137 A++ N + + +E+ PR + P S PS + + LS Sbjct: 541 ALNSCNKMEIEGRTIRLELQGPRGS---PNARSQ-PSKTLFVKGLS 582 Score = 33.9 bits (76), Expect = 0.31 Identities = 15/27 (55%), Positives = 20/27 (74%) Frame = -3 Query: 349 AVDQKTGMSRGFGFVNFVHREDAEKAI 269 AVD +TG +R FG+V+F ED EKA+ Sbjct: 341 AVDVRTGTNRKFGYVDFESAEDLEKAL 367 Score = 33.1 bits (74), Expect = 0.54 Identities = 20/78 (25%), Positives = 35/78 (44%) Frame = -3 Query: 475 GHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFV 296 G D ++ ++ NLS + E +L E+F V + + + G S+G ++ F Sbjct: 386 GRDSKKVRAARTLLAKNLSFNITEDELKEVFE-----DAVEIRLVSQDGRSKGIAYIEFK 440 Query: 295 HREDAEKAISKLNGYGYD 242 DAEK + + G D Sbjct: 441 SEADAEKNLEEKQGAEID 458
>TADBP_MOUSE (Q921F2) TAR DNA-binding protein 43 (TDP-43)| Length = 414 Score = 48.1 bits (113), Expect = 2e-05 Identities = 27/57 (47%), Positives = 31/57 (54%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 V L T E DL + F TFG V V V D KTG S+GFGFV F E K +S+ Sbjct: 108 VLGLPWKTTEQDLKDYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMSQ 164
>HNRPD_MOUSE (Q60668) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 48.1 bits (113), Expect = 2e-05 Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 4/82 (4%) Frame = -3 Query: 487 HTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGF 308 HT+A R +E + + LS DT + DL + F FG V + +D TG SRGFGF Sbjct: 86 HTEAAAAQR---EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGF 142 Query: 307 VNFVHREDAEKAIS----KLNG 254 V F E +K + KLNG Sbjct: 143 VLFKESESVDKVMDQKEHKLNG 164
>FUSIP_MOUSE (Q9R0U0) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (Neural-specific SR pro Length = 262 Score = 47.8 bits (112), Expect = 2e-05 Identities = 26/67 (38%), Positives = 36/67 (53%) Frame = -3 Query: 457 RNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAE 278 R S+ V N+++DTR DL F +G + VYV +D T RGF +V F DAE Sbjct: 6 RPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAE 65 Query: 277 KAISKLN 257 A+ L+ Sbjct: 66 DALHNLD 72
>FUSIP_HUMAN (O75494) FUS-interacting serine-arginine-rich protein 1| (TLS-associated protein with Ser-Arg repeats) (TLS-associated protein with SR repeats) (TASR) (TLS-associated serine-arginine protein) (TLS-associated SR protein) (40 kDa SR-repressor pr Length = 262 Score = 47.8 bits (112), Expect = 2e-05 Identities = 26/67 (38%), Positives = 36/67 (53%) Frame = -3 Query: 457 RNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAE 278 R S+ V N+++DTR DL F +G + VYV +D T RGF +V F DAE Sbjct: 6 RPPNTSLFVRNVADDTRSEDLRREFGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVRDAE 65 Query: 277 KAISKLN 257 A+ L+ Sbjct: 66 DALHNLD 72
>NUCL_MOUSE (P09405) Nucleolin (Protein C23)| Length = 706 Score = 47.8 bits (112), Expect = 2e-05 Identities = 31/85 (36%), Positives = 45/85 (52%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 R ++ V LSEDT E L E F G+V R + D++TG S+GFGFV+F EDA Sbjct: 563 RSQPSKTLFVKGLSEDTTEETLKESFE--GSV-RARIVTDRETGSSKGFGFVDFNSEEDA 619 Query: 280 EKAISKLNGYGYDNLILHVEMAAPR 206 + A + D + ++ A P+ Sbjct: 620 KAAKEAMEDGEIDGNKVTLDWAKPK 644 Score = 32.3 bits (72), Expect = 0.92 Identities = 14/26 (53%), Positives = 19/26 (73%) Frame = -3 Query: 346 VDQKTGMSRGFGFVNFVHREDAEKAI 269 VD +TG +R FG+V+F ED EKA+ Sbjct: 340 VDVRTGTNRKFGYVDFESAEDLEKAL 365 Score = 32.0 bits (71), Expect = 1.2 Identities = 19/78 (24%), Positives = 35/78 (44%) Frame = -3 Query: 475 GHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFV 296 G D ++ ++ NLS + E +L E+F + + + + G S+G ++ F Sbjct: 384 GRDSKKVRAARTLLAKNLSFNITEDELKEVFE-----DAMEIRLVSQDGKSKGIAYIEFK 438 Query: 295 HREDAEKAISKLNGYGYD 242 DAEK + + G D Sbjct: 439 SEADAEKNLEEKQGAEID 456
>BOLL_MACFA (Q8WP23) Protein boule-like| Length = 283 Score = 47.8 bits (112), Expect = 2e-05 Identities = 24/74 (32%), Positives = 42/74 (56%) Frame = -3 Query: 445 NSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAIS 266 N + V + T E DL + F +G+V V + V+ + G+S+G+GFV F +EDA+K + Sbjct: 33 NRIFVGGIDFKTNESDLRKFFSQYGSVKEVKI-VNDRAGVSKGYGFVTFETQEDAQKILQ 91 Query: 265 KLNGYGYDNLILHV 224 + Y + L++ Sbjct: 92 EAEKLNYKDKKLNI 105
>BOLL_HUMAN (Q8N9W6) Protein boule-like| Length = 283 Score = 47.8 bits (112), Expect = 2e-05 Identities = 24/74 (32%), Positives = 42/74 (56%) Frame = -3 Query: 445 NSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAIS 266 N + V + T E DL + F +G+V V + V+ + G+S+G+GFV F +EDA+K + Sbjct: 33 NRIFVGGIDFKTNESDLRKFFSQYGSVKEVKI-VNDRAGVSKGYGFVTFETQEDAQKILQ 91 Query: 265 KLNGYGYDNLILHV 224 + Y + L++ Sbjct: 92 EAEKLNYKDKKLNI 105
>MK67I_XENTR (Q6GL69) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| Length = 276 Score = 47.8 bits (112), Expect = 2e-05 Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 5/93 (5%) Frame = -3 Query: 472 HDMRRRNDENSVR-----VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGF 308 H++RR++ +V + ++ EP L E F FG V+R+ ++ +KTG S+G+ + Sbjct: 27 HEIRRKSQVGAVSPGVIYIGHIPRALYEPQLREYFSQFGTVTRLRLSRSKKTGNSKGYAY 86 Query: 307 VNFVHREDAEKAISKLNGYGYDNLILHVEMAAP 209 V F E A+ +N Y + +L E P Sbjct: 87 VEFECDEVAKIVADTMNNYLFCERLLKCEFVPP 119
>HNRPD_RAT (Q9JJ54) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 353 Score = 47.8 bits (112), Expect = 2e-05 Identities = 32/82 (39%), Positives = 42/82 (51%), Gaps = 4/82 (4%) Frame = -3 Query: 487 HTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGF 308 HT+A R +E + + LS DT + DL + F FG V + +D TG SRGFGF Sbjct: 84 HTEAATAQR---EEWKMFIGGLSWDTTKKDLKDYFSKFGDVVDCTLKLDPITGRSRGFGF 140 Query: 307 VNFVHREDAEKAIS----KLNG 254 V F E +K + KLNG Sbjct: 141 VLFKESESVDKVMDQKEHKLNG 162
>RAVR1_HUMAN (Q8IY67) Protein raver-1| Length = 606 Score = 47.8 bits (112), Expect = 2e-05 Identities = 27/85 (31%), Positives = 43/85 (50%), Gaps = 9/85 (10%) Frame = -3 Query: 481 DAGHDMRRRNDENSVR---------VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTG 329 +A H R R E SV+ V NL + EL R FG++ R ++ ++TG Sbjct: 111 NAFHQSRLRERELSVQLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTG 170 Query: 328 MSRGFGFVNFVHREDAEKAISKLNG 254 S+G+GF ++ ++ A +A S L G Sbjct: 171 QSKGYGFAEYMKKDSAARAKSDLLG 195
>PPIL4_MOUSE (Q9CXG3) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 47.4 bits (111), Expect = 3e-05 Identities = 27/78 (34%), Positives = 40/78 (51%) Frame = -3 Query: 448 ENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI 269 EN + V L+ T + DL +F FG + V D KTG S + F+ F ED EKA Sbjct: 239 ENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAF 298 Query: 268 SKLNGYGYDNLILHVEMA 215 K++ D+ +HV+ + Sbjct: 299 FKMDNVLIDDRRIHVDFS 316
>PPIL4_HUMAN (Q8WUA2) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) (Cyclophilin-like protein PPIL4) Length = 492 Score = 47.4 bits (111), Expect = 3e-05 Identities = 27/78 (34%), Positives = 40/78 (51%) Frame = -3 Query: 448 ENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI 269 EN + V L+ T + DL +F FG + V D KTG S + F+ F ED EKA Sbjct: 239 ENVLFVCKLNPVTTDEDLEIIFSRFGPIRSCEVIRDWKTGESLCYAFIEFEKEEDCEKAF 298 Query: 268 SKLNGYGYDNLILHVEMA 215 K++ D+ +HV+ + Sbjct: 299 FKMDNVLIDDRRIHVDFS 316
>YNL0_YEAST (P53927) Hypothetical 25.4 kDa protein in CYB5-LEU4 intergenic| region Length = 220 Score = 47.4 bits (111), Expect = 3e-05 Identities = 24/63 (38%), Positives = 37/63 (58%) Frame = -3 Query: 439 VRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKL 260 + V+ L E +L + F FG + V +A ++KTG SR +GF+ FV++EDA A + Sbjct: 93 IYVSRLPHGFHEKELSKYFAQFGDLKEVRLARNKKTGNSRHYGFLEFVNKEDAMIAQESM 152 Query: 259 NGY 251 N Y Sbjct: 153 NNY 155
>PUB1_YEAST (P32588) Nuclear and cytoplasmic polyadenylated RNA-binding protein| PUB1 (ARS consensus-binding protein ACBP-60) (Poly(U)-binding protein) (Poly uridylate-binding protein) Length = 452 Score = 47.4 bits (111), Expect = 3e-05 Identities = 25/83 (30%), Positives = 45/83 (54%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 +D ++ V +L+ + + L F+ F + +V D +TG SRG+GFV+F ++DA+ Sbjct: 158 DDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQN 217 Query: 274 AISKLNGYGYDNLILHVEMAAPR 206 A+ + G + L + AA R Sbjct: 218 AMDSMQGQDLNGRPLRINWAAKR 240
>NUCL_HUMAN (P19338) Nucleolin (Protein C23)| Length = 709 Score = 47.4 bits (111), Expect = 3e-05 Identities = 32/90 (35%), Positives = 46/90 (51%) Frame = -3 Query: 475 GHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFV 296 G R ++ V LSEDT E L E F G+V R + D++TG S+GFGFV+F Sbjct: 561 GSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFN 617 Query: 295 HREDAEKAISKLNGYGYDNLILHVEMAAPR 206 EDA+ A + D + ++ A P+ Sbjct: 618 SEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 647 Score = 39.3 bits (90), Expect = 0.007 Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 1/106 (0%) Frame = -3 Query: 451 DENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQ-KTGMSRGFGFVNFVHREDAEK 275 + ++ ++NLS E L E+F ++ V Q + G S+G+ F+ F EDA++ Sbjct: 483 ESKTLVLSNLSYSATEETLQEVFE-----KATFIKVPQNQNGKSKGYAFIEFASFEDAKE 537 Query: 274 AISKLNGYGYDNLILHVEMAAPRPT*LLPTKHSDIPSVMVMLSALS 137 A++ N + + +E+ PR + P S PS + + LS Sbjct: 538 ALNSCNKREIEGRAIRLELQGPRGS---PNARSQ-PSKTLFVKGLS 579 Score = 34.7 bits (78), Expect = 0.18 Identities = 20/78 (25%), Positives = 32/78 (41%) Frame = -3 Query: 475 GHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFV 296 G D ++ D ++ NL + +L E+F + V K G S+G ++ F Sbjct: 382 GKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLV-----SKDGKSKGIAYIEFK 436 Query: 295 HREDAEKAISKLNGYGYD 242 DAEK + G D Sbjct: 437 TEADAEKTFEEKQGTEID 454 Score = 32.3 bits (72), Expect = 0.92 Identities = 14/26 (53%), Positives = 19/26 (73%) Frame = -3 Query: 346 VDQKTGMSRGFGFVNFVHREDAEKAI 269 VD + GM+R FG+V+F ED EKA+ Sbjct: 338 VDVRIGMTRKFGYVDFESAEDLEKAL 363
>NAM8_YEAST (Q00539) Protein NAM8| Length = 523 Score = 47.4 bits (111), Expect = 3e-05 Identities = 23/64 (35%), Positives = 39/64 (60%), Gaps = 1/64 (1%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELF-RTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAIS 266 S+ V +L+ + E L ELF + + S + DQ TGMS+G+GFV F + ++ + A+S Sbjct: 164 SIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALS 223 Query: 265 KLNG 254 ++ G Sbjct: 224 EMQG 227
>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 47.4 bits (111), Expect = 3e-05 Identities = 25/78 (32%), Positives = 44/78 (56%) Frame = -3 Query: 448 ENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI 269 EN + V L+ T++ DL +F FG + V D++TG S + F+ F +++D E+A Sbjct: 247 ENVLFVCKLNPVTQDEDLHLIFSRFGTILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAY 306 Query: 268 SKLNGYGYDNLILHVEMA 215 K+ G D+ +HV+ + Sbjct: 307 FKMQGVLIDDHRIHVDFS 324
>PPIL4_ASPFU (Q4WAQ9) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 459 Score = 47.4 bits (111), Expect = 3e-05 Identities = 25/78 (32%), Positives = 44/78 (56%) Frame = -3 Query: 448 ENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI 269 EN + V L+ T++ DL +F FG + V D++TG S + F+ F +++D E+A Sbjct: 247 ENVLFVCKLNPVTQDEDLQLIFSRFGPILSCEVIRDKRTGDSLQYAFIEFENQKDCEQAY 306 Query: 268 SKLNGYGYDNLILHVEMA 215 K+ G D+ +HV+ + Sbjct: 307 FKMQGVLIDDHRIHVDFS 324
>NUCL_PONPY (Q5RF26) Nucleolin| Length = 711 Score = 47.4 bits (111), Expect = 3e-05 Identities = 32/90 (35%), Positives = 46/90 (51%) Frame = -3 Query: 475 GHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFV 296 G R ++ V LSEDT E L E F G+V R + D++TG S+GFGFV+F Sbjct: 563 GSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFN 619 Query: 295 HREDAEKAISKLNGYGYDNLILHVEMAAPR 206 EDA+ A + D + ++ A P+ Sbjct: 620 SEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 649 Score = 39.3 bits (90), Expect = 0.007 Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 1/106 (0%) Frame = -3 Query: 451 DENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQ-KTGMSRGFGFVNFVHREDAEK 275 + ++ ++NLS E L E+F ++ V Q + G S+G+ F+ F EDA++ Sbjct: 485 ESKTLVLSNLSYSATEETLQEVFE-----KATFIKVPQNQNGKSKGYAFIEFASFEDAKE 539 Query: 274 AISKLNGYGYDNLILHVEMAAPRPT*LLPTKHSDIPSVMVMLSALS 137 A++ N + + +E+ PR + P S PS + + LS Sbjct: 540 ALNSCNKREIEGRAIRLELQGPRGS---PNARSQ-PSKTLFVKGLS 581 Score = 34.7 bits (78), Expect = 0.18 Identities = 20/78 (25%), Positives = 32/78 (41%) Frame = -3 Query: 475 GHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFV 296 G D ++ D ++ NL + +L E+F + V K G S+G ++ F Sbjct: 384 GKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLV-----SKDGKSKGIAYIEFK 438 Query: 295 HREDAEKAISKLNGYGYD 242 DAEK + G D Sbjct: 439 TEADAEKTFEEKQGTEID 456 Score = 32.3 bits (72), Expect = 0.92 Identities = 14/26 (53%), Positives = 19/26 (73%) Frame = -3 Query: 346 VDQKTGMSRGFGFVNFVHREDAEKAI 269 VD + GM+R FG+V+F ED EKA+ Sbjct: 340 VDVRIGMTRKFGYVDFESAEDLEKAL 365
>NUCL_MACFA (Q4R4J7) Nucleolin| Length = 710 Score = 47.4 bits (111), Expect = 3e-05 Identities = 32/90 (35%), Positives = 46/90 (51%) Frame = -3 Query: 475 GHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFV 296 G R ++ V LSEDT E L E F G+V R + D++TG S+GFGFV+F Sbjct: 562 GSPNARSQPSKTLFVKGLSEDTTEETLKESFD--GSV-RARIVTDRETGSSKGFGFVDFN 618 Query: 295 HREDAEKAISKLNGYGYDNLILHVEMAAPR 206 EDA+ A + D + ++ A P+ Sbjct: 619 SEEDAKAAKEAMEDGEIDGNKVTLDWAKPK 648 Score = 39.3 bits (90), Expect = 0.007 Identities = 28/106 (26%), Positives = 51/106 (48%), Gaps = 1/106 (0%) Frame = -3 Query: 451 DENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQ-KTGMSRGFGFVNFVHREDAEK 275 + ++ ++NLS E L E+F ++ V Q + G S+G+ F+ F EDA++ Sbjct: 484 ESKTLVLSNLSYSATEETLQEVFE-----KATFIKVPQNQNGKSKGYAFIEFASFEDAKE 538 Query: 274 AISKLNGYGYDNLILHVEMAAPRPT*LLPTKHSDIPSVMVMLSALS 137 A++ N + + +E+ PR + P S PS + + LS Sbjct: 539 ALNSCNKREIEGRAIRLELQGPRGS---PNARSQ-PSKTLFVKGLS 580 Score = 34.7 bits (78), Expect = 0.18 Identities = 20/78 (25%), Positives = 32/78 (41%) Frame = -3 Query: 475 GHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFV 296 G D ++ D ++ NL + +L E+F + V K G S+G ++ F Sbjct: 383 GKDSKKERDARTLLAKNLPYKVTQDELKEVFEDAAEIRLV-----SKDGKSKGIAYIEFK 437 Query: 295 HREDAEKAISKLNGYGYD 242 DAEK + G D Sbjct: 438 TEADAEKTFEEKQGTEID 455 Score = 32.3 bits (72), Expect = 0.92 Identities = 14/26 (53%), Positives = 19/26 (73%) Frame = -3 Query: 346 VDQKTGMSRGFGFVNFVHREDAEKAI 269 VD + GM+R FG+V+F ED EKA+ Sbjct: 339 VDVRIGMTRKFGYVDFESAEDLEKAL 364
>CSX1_SCHPO (O13759) RNA-binding post-transcriptional regulator csx1| Length = 632 Score = 47.0 bits (110), Expect = 4e-05 Identities = 26/85 (30%), Positives = 46/85 (54%), Gaps = 1/85 (1%) Frame = -3 Query: 457 RNDENSVRVTNLSEDTREPDLLELFRT-FGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 R+ E S+ V +L T + DL FR+ + + + + VD TG+SR +GFV F ++ Sbjct: 178 RDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQ 237 Query: 280 EKAISKLNGYGYDNLILHVEMAAPR 206 + A+ + GY L + +A+P+ Sbjct: 238 QHALMHMQGYLCQGRPLRISVASPK 262 Score = 34.7 bits (78), Expect = 0.18 Identities = 31/112 (27%), Positives = 48/112 (42%), Gaps = 16/112 (14%) Frame = -3 Query: 541 GGPAKGSYVAPRLRA--------GAVHTDAGHDMRRRNDE--------NSVRVTNLSEDT 410 G P + S +P+ RA G V T + R+ N + +V V L+ + Sbjct: 251 GRPLRISVASPKSRASIAADSALGIVPTSTSN--RQPNQDLCSMDPLNTTVFVGGLASNL 308 Query: 409 REPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 E DL F+ FG + + K +G GFV + + AEKAI+ + G Sbjct: 309 SEKDLQVCFQPFGRILNI------KIPFGKGCGFVQYSEKSAAEKAINTMQG 354
>TCG1_SCHPO (Q9HEQ9) Single-stranded TG1-3 DNA-binding protein| Length = 348 Score = 47.0 bits (110), Expect = 4e-05 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 6/101 (5%) Frame = -3 Query: 493 AVHTDA--GHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSR 320 AVH A + ++ D+ V V LS T++ ++ LF T G V +V + + +R Sbjct: 26 AVHASAEQSNTPAQQADDFRVFVGRLSTSTKKSEIRSLFETVGTVRKVTIPFRRVRRGTR 85 Query: 319 ----GFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMAAP 209 G FV F ++ED +KAI LNG D+ + V+ A P Sbjct: 86 LVPSGIAFVTFNNQEDVDKAIETLNGKTLDDREIVVQKARP 126 Score = 41.6 bits (96), Expect = 0.002 Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 14/94 (14%) Frame = -3 Query: 445 NSVRVTNLSEDTREPDLLELFRTFGA--------------VSRVYVAVDQKTGMSRGFGF 308 NS+ V+ LS L E+F + + R+ + +Q+ G RGFGF Sbjct: 205 NSIYVSGLSVTLTNEGLKEMFDAYNPTRARIAVRSLPPYIIRRIKLRGEQRRG--RGFGF 262 Query: 307 VNFVHREDAEKAISKLNGYGYDNLILHVEMAAPR 206 V+F + ED +AI ++NG +L L V+ A R Sbjct: 263 VSFANAEDQSRAIEEMNGKQVGDLTLVVKSAVFR 296
>PPIL4_NEUCR (Q871A4) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 494 Score = 47.0 bits (110), Expect = 4e-05 Identities = 26/78 (33%), Positives = 42/78 (53%) Frame = -3 Query: 448 ENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI 269 EN + V L+ T + DL +F FG + V DQKTG S + F+ F ++ E+A Sbjct: 252 ENVLFVCKLNPVTTDEDLELIFSRFGKILSCEVIRDQKTGDSLQYAFIEFEDKKSCEEAY 311 Query: 268 SKLNGYGYDNLILHVEMA 215 SK++ D+ +HV+ + Sbjct: 312 SKMDSVLIDDRRIHVDFS 329
>BOLL_MOUSE (Q924M5) Protein boule-like| Length = 281 Score = 47.0 bits (110), Expect = 4e-05 Identities = 23/74 (31%), Positives = 42/74 (56%) Frame = -3 Query: 445 NSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAIS 266 N + V + T E DL + F +G+V V + V+ + G+S+G+GF+ F +EDA+K + Sbjct: 33 NRIFVGGIDFKTNENDLRKFFSQYGSVKEVKI-VNDRAGVSKGYGFITFETQEDAQKILQ 91 Query: 265 KLNGYGYDNLILHV 224 + Y + L++ Sbjct: 92 EAEKLNYKDKKLNI 105
>CUGB1_MOUSE (P28659) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (Deadenylation factor EDEN-BP) (Brain protein F41) Length = 486 Score = 47.0 bits (110), Expect = 4e-05 Identities = 21/61 (34%), Positives = 39/61 (63%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 + +L ++ + DLL++F FG V V +D++T +S+ FGFV++ + A+ AI +NG Sbjct: 405 IYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNG 464 Query: 253 Y 251 + Sbjct: 465 F 465 Score = 30.8 bits (68), Expect = 2.7 Identities = 20/52 (38%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = -3 Query: 406 EPDLLELFRTFGAVSRVYVAVD--QKTGMSRGFGFVNFVHREDAEKAISKLN 257 E DL ELF +GAV + + D Q S+G FV F R+ A +A + L+ Sbjct: 29 EKDLRELFEQYGAVYEINILRDRSQNPPQSKGCCFVTFYTRKAALEAQNALH 80
>CUGB1_HUMAN (Q92879) CUG triplet repeat RNA-binding protein 1 (CUG-BP1)| (RNA-binding protein BRUNOL-2) (Deadenylation factor CUG-BP) (50 kDa Nuclear polyadenylated RNA-binding protein) (EDEN-BP) Length = 486 Score = 47.0 bits (110), Expect = 4e-05 Identities = 21/61 (34%), Positives = 39/61 (63%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 + +L ++ + DLL++F FG V V +D++T +S+ FGFV++ + A+ AI +NG Sbjct: 405 IYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNG 464 Query: 253 Y 251 + Sbjct: 465 F 465 Score = 31.2 bits (69), Expect = 2.0 Identities = 21/52 (40%), Positives = 28/52 (53%), Gaps = 2/52 (3%) Frame = -3 Query: 406 EPDLLELFRTFGAVSRVYVAVD--QKTGMSRGFGFVNFVHREDAEKAISKLN 257 E DL ELF +GAV + V D Q S+G FV F R+ A +A + L+ Sbjct: 29 EKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALH 80
>RAVR1_MOUSE (Q9CW46) Protein raver-1| Length = 748 Score = 47.0 bits (110), Expect = 4e-05 Identities = 40/141 (28%), Positives = 61/141 (43%), Gaps = 21/141 (14%) Frame = -3 Query: 472 HDMRRRNDENSVR---------VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSR 320 H R R E SV+ V NL + EL R FG++ R ++ ++TG S+ Sbjct: 114 HQSRLRERELSVQLQPTDALLCVANLPPSLTQAQFEELVRPFGSLERCFLVYSERTGHSK 173 Query: 319 GFGFVNFVHREDAEKAISKLNG--YGYDNLILHVEMAAPRPT*L----------LPTKHS 176 G+GF ++ ++ A +A S L G G L +H A L LP S Sbjct: 174 GYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDHLPPGFS 233 Query: 175 DIPSVMVMLSALSVLFVVNLC 113 D+ + + ALSV++ C Sbjct: 234 DVDA---LRRALSVVYTPTFC 251
>HNRPG_HUMAN (P38159) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) (Glycoprotein p43) Length = 391 Score = 47.0 bits (110), Expect = 4e-05 Identities = 25/73 (34%), Positives = 37/73 (50%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 + L+ +T E L +F +G + V + D++T SRGF FV F DA+ A +NG Sbjct: 12 IGGLNTETNEKALEAVFGKYGRIVEVLLMKDRETNKSRGFAFVTFESPADAKDAARDMNG 71 Query: 253 YGYDNLILHVEMA 215 D + VE A Sbjct: 72 KSLDGKAIKVEQA 84
>HNRPD_HUMAN (Q14103) Heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0)| (AU-rich element RNA-binding protein 1) Length = 355 Score = 46.6 bits (109), Expect = 5e-05 Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 4/82 (4%) Frame = -3 Query: 487 HTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGF 308 H++A R +E + + LS DT + DL + F FG V + +D TG SRGFGF Sbjct: 86 HSEAATAQR---EEWKMFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGF 142 Query: 307 VNFVHREDAEKAIS----KLNG 254 V F E +K + KLNG Sbjct: 143 VLFKESESVDKVMDQKEHKLNG 164
>GRP8_ARATH (Q03251) Glycine-rich RNA-binding protein 8 (CCR1 protein)| Length = 169 Score = 46.6 bits (109), Expect = 5e-05 Identities = 27/76 (35%), Positives = 38/76 (50%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V L+ T + DL F FG V + D+++G SRGFGFV F + AI ++NG Sbjct: 10 VGGLAWATNDEDLQRTFSQFGDVIDSKIINDRESGRSRGFGFVTFKDEKAMRDAIEEMNG 69 Query: 253 YGYDNLILHVEMAAPR 206 D ++ V A R Sbjct: 70 KELDGRVITVNEAQSR 85
>HRB1_YEAST (P38922) Protein HRB1 (Protein TOM34)| Length = 429 Score = 46.6 bits (109), Expect = 5e-05 Identities = 28/86 (32%), Positives = 43/86 (50%) Frame = -3 Query: 457 RNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAE 278 RN NS+ V NL+ D+ DL E F G V R + + G RG G V F + +D + Sbjct: 132 RNYSNSIFVGNLTYDSTPEDLTEFFSQIGKVVRADIITSR--GHHRGMGTVEFTNSDDVD 189 Query: 277 KAISKLNGYGYDNLILHVEMAAPRPT 200 +AI + +G + + + V P P+ Sbjct: 190 RAIRQYDGAFFMDRKIFVRQDNPPPS 215 Score = 42.7 bits (99), Expect = 7e-04 Identities = 24/72 (33%), Positives = 35/72 (48%) Frame = -3 Query: 430 TNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNGY 251 +NL T + DL +LF T G V+ + D K G G V + + +DA+ I +LN Y Sbjct: 356 SNLPFSTAKSDLYDLFETIGKVNNAELRYDSK-GAPTGIAVVEYDNVDDADVCIERLNNY 414 Query: 250 GYDNLILHVEMA 215 Y L + A Sbjct: 415 NYGGCDLDISYA 426
>TRA2_DROME (P19018) Transformer-2 sex-determining protein| Length = 264 Score = 46.6 bits (109), Expect = 5e-05 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 3/102 (2%) Frame = -3 Query: 511 PRLRAGAVHTDAGHDMRRRNDENSVR---VTNLSEDTREPDLLELFRTFGAVSRVYVAVD 341 PR R+G D + R + R V L+ +T + + ELF +G + R+ + +D Sbjct: 72 PRHRSGRSSRDRERMHKSREHPQASRCIGVFGLNTNTSQHKVRELFNKYGPIERIQMVID 131 Query: 340 QKTGMSRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMA 215 +T SRGF F+ F DA A +G D + V+ + Sbjct: 132 AQTQRSRGFCFIYFEKLSDARAAKDSCSGIEVDGRRIRVDFS 173
>PABP_DROME (P21187) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 634 Score = 46.6 bits (109), Expect = 5e-05 Identities = 25/63 (39%), Positives = 36/63 (57%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 +V V N +ED + L E F +G ++ Y + ++ G S+GFGFV F E AE A+ Sbjct: 184 NVYVKNFTEDFDDEKLKEFFEPYGKITS-YKVMSKEDGKSKGFGFVAFETTEAAEAAVQA 242 Query: 262 LNG 254 LNG Sbjct: 243 LNG 245 Score = 45.8 bits (107), Expect = 8e-05 Identities = 28/85 (32%), Positives = 43/85 (50%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 RR+ +V + NL + + F FG + VA D+K G S+G+GFV+F E A Sbjct: 85 RRSGVGNVFIKNLDRAIDNKAIYDTFSAFGNILSCKVATDEK-GNSKGYGFVHFETEEAA 143 Query: 280 EKAISKLNGYGYDNLILHVEMAAPR 206 +I K+NG + ++V PR Sbjct: 144 NTSIDKVNGMLLNGKKVYVGKFIPR 168 Score = 40.8 bits (94), Expect = 0.003 Identities = 22/62 (35%), Positives = 33/62 (53%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 S+ V +L +D E L + F + G V + V D T S G+ +VNF DAE+A+ Sbjct: 3 SLYVGDLPQDVNESGLFDKFSSAGPVLSIRVCRDVITRRSLGYAYVNFQQPADAERALDT 62 Query: 262 LN 257 +N Sbjct: 63 MN 64 Score = 38.9 bits (89), Expect = 0.010 Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 1/74 (1%) Frame = -3 Query: 433 VTNLSEDTREPDLLEL-FRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLN 257 V NL +DT + D L + F +G ++ V D++ G S+GFGFV F +A A+++LN Sbjct: 291 VKNL-DDTIDDDRLRIAFSPYGNITSAKVMTDEE-GRSKGFGFVCFNAASEATCAVTELN 348 Query: 256 GYGYDNLILHVEMA 215 G + L+V +A Sbjct: 349 GRVVGSKPLYVALA 362
>CSTFT_MOUSE (Q8C7E9) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 632 Score = 46.2 bits (108), Expect = 6e-05 Identities = 25/77 (32%), Positives = 40/77 (51%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 SV V N+ + E L ++F G+V + D++TG +G+GF + +E A A+ Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 262 LNGYGYDNLILHVEMAA 212 LNG + L V+ AA Sbjct: 77 LNGREFSGRALRVDNAA 93
>SQD_DROME (Q08473) RNA-binding protein squid (Heterogeneous nuclear| ribonucleoprotein 40) (HNRNP 40) Length = 344 Score = 46.2 bits (108), Expect = 6e-05 Identities = 22/62 (35%), Positives = 36/62 (58%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 +R+D+ + V LS +T E +L + F +G + + V D +TG SRGF F+ F + E Sbjct: 51 QRDDDRKLFVGGLSWETTEKELRDHFGKYGEIESINVKTDPQTGRSRGFAFIVFTNTEAI 110 Query: 280 EK 275 +K Sbjct: 111 DK 112
>NUCL_CHICK (P15771) Nucleolin (Protein C23)| Length = 694 Score = 46.2 bits (108), Expect = 6e-05 Identities = 32/105 (30%), Positives = 54/105 (51%) Frame = -3 Query: 520 YVAPRLRAGAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVD 341 + +P + G ++ G + + + ++ V LSEDT E L E F G++S + D Sbjct: 532 FSSPSWQKGNMNARGGFNQQSK----TLFVRGLSEDTTEETLRESFE--GSIS-ARIVTD 584 Query: 340 QKTGMSRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMAAPR 206 + TG S+GFGFV+F EDA+ A + D + ++ A P+ Sbjct: 585 RDTGSSKGFGFVDFSSPEDAKAAKEAMEDGEIDGNKVTLDFAKPK 629 Score = 30.4 bits (67), Expect = 3.5 Identities = 19/81 (23%), Positives = 35/81 (43%) Frame = -3 Query: 463 RRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHRED 284 ++ D ++ V NL E ++ +F V V K G S+G ++ F + Sbjct: 365 KKERDARTLFVKNLPYRVTEDEMKNVFENALEVRLVL----NKEGSSKGMAYIEFKTEAE 420 Query: 283 AEKAISKLNGYGYDNLILHVE 221 AEKA+ + G D + ++ Sbjct: 421 AEKALEEKQGTEVDGRAMVID 441
>PPIL4_EMENI (Q5ARI5) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 46.2 bits (108), Expect = 6e-05 Identities = 25/78 (32%), Positives = 43/78 (55%) Frame = -3 Query: 448 ENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI 269 EN + V L+ T++ DL +F FG + V D++TG S + F+ F ++D E+A Sbjct: 247 ENVLFVCKLNPVTQDEDLELIFSRFGKILSCEVIRDKRTGDSLQYAFIEFESQKDCEQAY 306 Query: 268 SKLNGYGYDNLILHVEMA 215 K+ G D+ +HV+ + Sbjct: 307 FKMQGVLIDDHRIHVDFS 324
>RAVR1_RAT (Q5XI28) Protein raver-1| Length = 748 Score = 46.2 bits (108), Expect = 6e-05 Identities = 26/82 (31%), Positives = 41/82 (50%), Gaps = 9/82 (10%) Frame = -3 Query: 472 HDMRRRNDENSVR---------VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSR 320 H R R E SV+ V NL + EL R FG++ R ++ ++TG S+ Sbjct: 114 HQSRLRERELSVQLQPTDALLCVANLPPSLTQAQFEELVRPFGSLERCFLVYSERTGHSK 173 Query: 319 GFGFVNFVHREDAEKAISKLNG 254 G+GF ++ ++ A +A S L G Sbjct: 174 GYGFAEYMKKDSAARAKSDLLG 195
>CSTFT_HUMAN (Q9H0L4) Cleavage stimulation factor, 64 kDa subunit, tau variant| (CSTF 64 kDa subunit, tau variant) (CF-1 64 kDa subunit, tau variant) (TauCstF-64) Length = 616 Score = 46.2 bits (108), Expect = 6e-05 Identities = 25/77 (32%), Positives = 40/77 (51%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 SV V N+ + E L ++F G+V + D++TG +G+GF + +E A A+ Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGSVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 262 LNGYGYDNLILHVEMAA 212 LNG + L V+ AA Sbjct: 77 LNGREFSGRALRVDNAA 93
>PABPX_ARATH (Q9ZQA8) Probable polyadenylate-binding protein At2g36660| (Poly(A)-binding protein At2g36660) (PABP) Length = 609 Score = 45.8 bits (107), Expect = 8e-05 Identities = 32/106 (30%), Positives = 53/106 (50%), Gaps = 2/106 (1%) Frame = -3 Query: 427 NLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNGYG 248 NL D E L E F FG + + +A D+ + RG+ FVNF + EDA +A +NG Sbjct: 207 NLDADVSEDLLREKFAEFGKIVSLAIAKDENR-LCRGYAFVNFDNPEDARRAAETVNGTK 265 Query: 247 YDNLILHVEMAAPRP--T*LLPTKHSDIPSVMVMLSALSVLFVVNL 116 + + L+V A + LL + + M++ +S ++V N+ Sbjct: 266 FGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNV 311 Score = 44.7 bits (104), Expect = 2e-04 Identities = 27/68 (39%), Positives = 35/68 (51%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 RRN +V V NL E L ++F+ FG + VA + G SRG+GFV F + A Sbjct: 107 RRNGVGNVFVKNLPESVTNAVLQDMFKKFGNIVSCKVAT-LEDGKSRGYGFVQFEQEDAA 165 Query: 280 EKAISKLN 257 AI LN Sbjct: 166 HAAIQTLN 173 Score = 38.9 bits (89), Expect = 0.010 Identities = 23/80 (28%), Positives = 39/80 (48%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 S+ V +L E L + F F +++ V + D +G S +G+ NF+ R+DA AI K Sbjct: 25 SLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDANLAIEK 84 Query: 262 LNGYGYDNLILHVEMAAPRP 203 N + ++ V + P Sbjct: 85 KNNSLLNGKMIRVMWSVRAP 104 Score = 38.1 bits (87), Expect = 0.017 Identities = 23/77 (29%), Positives = 41/77 (53%) Frame = -3 Query: 445 NSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAIS 266 +++ V N++ E +L + F G ++ + D+K G S+GFGFV F E+A A+ Sbjct: 304 SNIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEK-GKSKGFGFVCFSTPEEAIDAVK 362 Query: 265 KLNGYGYDNLILHVEMA 215 +G + L+V +A Sbjct: 363 TFHGQMFHGKPLYVAIA 379
>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 551 Score = 45.8 bits (107), Expect = 8e-05 Identities = 27/81 (33%), Positives = 42/81 (51%) Frame = -3 Query: 457 RNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAE 278 R EN + V L+ TR DL +F FG + V D+KTG S + F+ F ++DAE Sbjct: 258 RPPENILFVCKLNPVTRSDDLELIFSRFGKILSCEVIKDKKTGDSLQYAFIEFDKKDDAE 317 Query: 277 KAISKLNGYGYDNLILHVEMA 215 +A K+ D+ + V+ + Sbjct: 318 RAYFKMQNVLVDDRRIWVDFS 338
>NCBP2_MOUSE (Q9CQ49) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) Length = 156 Score = 45.8 bits (107), Expect = 8e-05 Identities = 25/74 (33%), Positives = 39/74 (52%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NLS T E + ELF G + ++ + +D+ + GF FV + R DAE A+ +NG Sbjct: 44 VGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING 103 Query: 253 YGYDNLILHVEMAA 212 D+ I+ + A Sbjct: 104 TRLDDRIIRTDWDA 117
>NCBP2_HUMAN (P52298) Nuclear cap-binding protein subunit 2 (20 kDa nuclear| cap-binding protein) (NCBP 20 kDa subunit) (CBP20) (NCBP-interacting protein 1) (NIP1) (Cell proliferation-inducing gene 55 protein) Length = 156 Score = 45.8 bits (107), Expect = 8e-05 Identities = 25/74 (33%), Positives = 39/74 (52%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NLS T E + ELF G + ++ + +D+ + GF FV + R DAE A+ +NG Sbjct: 44 VGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING 103 Query: 253 YGYDNLILHVEMAA 212 D+ I+ + A Sbjct: 104 TRLDDRIIRTDWDA 117
>NCBP2_BOVIN (Q3ZBJ1) Nuclear cap-binding protein subunit 2| Length = 156 Score = 45.8 bits (107), Expect = 8e-05 Identities = 25/74 (33%), Positives = 39/74 (52%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NLS T E + ELF G + ++ + +D+ + GF FV + R DAE A+ +NG Sbjct: 44 VGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYING 103 Query: 253 YGYDNLILHVEMAA 212 D+ I+ + A Sbjct: 104 TRLDDRIIRTDWDA 117
>PPIL4_SCHPO (Q9UUE4) Peptidyl-prolyl cis-trans isomerase cyp6 (EC 5.2.1.8)| (PPIase cyp6) (Rotamase cyp8) Length = 432 Score = 45.8 bits (107), Expect = 8e-05 Identities = 25/78 (32%), Positives = 42/78 (53%) Frame = -3 Query: 448 ENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI 269 EN + V L+ T++ DL +F FG + V D++TG S + F+ F ++E EKA Sbjct: 243 ENVLFVCKLNPVTQDEDLELIFSRFGKIISCQVIRDKETGDSLQYAFIEFDNKESVEKAY 302 Query: 268 SKLNGYGYDNLILHVEMA 215 K+ D+ +HV+ + Sbjct: 303 FKMQNVLIDDSRIHVDFS 320
>CSTF2_BOVIN (Q8HXM1) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 572 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/77 (32%), Positives = 39/77 (50%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 SV V N+ + E L ++F G V + D++TG +G+GF + +E A A+ Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 262 LNGYGYDNLILHVEMAA 212 LNG + L V+ AA Sbjct: 77 LNGREFSGRALRVDNAA 93
>CSTF2_MOUSE (Q8BIQ5) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 580 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/77 (32%), Positives = 39/77 (50%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 SV V N+ + E L ++F G V + D++TG +G+GF + +E A A+ Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 262 LNGYGYDNLILHVEMAA 212 LNG + L V+ AA Sbjct: 77 LNGREFSGRALRVDNAA 93
>PUF68_DROME (Q8T6B9) Poly U-binding splicing factor half pint (68 kDa poly| U-binding splicing factor) (Protein half pint) (PUF60 homolog) Length = 637 Score = 45.4 bits (106), Expect = 1e-04 Identities = 24/102 (23%), Positives = 50/102 (49%), Gaps = 1/102 (0%) Frame = -3 Query: 445 NSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAIS 266 N + V ++ D E D+ +F FG + +A +G+GF+ + +++ ++AI+ Sbjct: 227 NRIYVASIHPDLSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIA 286 Query: 265 KLNGYGYDNLILHVEMAAPRPT*L-LPTKHSDIPSVMVMLSA 143 +N + +L V + P L PT +S +P+ + +A Sbjct: 287 SMNLFDLGGQLLRVGRSITPPNALACPTTNSTMPTAAAVAAA 328 Score = 35.4 bits (80), Expect = 0.11 Identities = 18/62 (29%), Positives = 33/62 (53%) Frame = -3 Query: 439 VRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKL 260 V V ++S + +E + F FG + + ++ D T +GF FV + E A+ A+ ++ Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 191 Query: 259 NG 254 NG Sbjct: 192 NG 193
>GRP10_BRANA (Q05966) Glycine-rich RNA-binding protein 10| Length = 169 Score = 45.4 bits (106), Expect = 1e-04 Identities = 27/76 (35%), Positives = 38/76 (50%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V L+ T + +L F FG V + D++TG SRGFGFV F + + AI ++NG Sbjct: 10 VGGLAWATGDAELERTFSQFGEVIDSKIINDRETGRSRGFGFVTFKDEKSMKDAIDEMNG 69 Query: 253 YGYDNLILHVEMAAPR 206 D + V A R Sbjct: 70 KELDGRTITVNEAQSR 85
>GRP2_SORBI (Q99070) Glycine-rich RNA-binding protein 2| Length = 168 Score = 45.4 bits (106), Expect = 1e-04 Identities = 28/76 (36%), Positives = 35/76 (46%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V L+ T L + F FG V V D++TG SRGFGFV F + AI +NG Sbjct: 12 VGGLAWATNNETLEQAFANFGQVIDSKVITDRETGRSRGFGFVTFSSEQSMLDAIENMNG 71 Query: 253 YGYDNLILHVEMAAPR 206 D + V A R Sbjct: 72 KELDGRNITVNQAQSR 87
>CSTF2_PONPY (Q5RDA3) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/77 (32%), Positives = 39/77 (50%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 SV V N+ + E L ++F G V + D++TG +G+GF + +E A A+ Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 262 LNGYGYDNLILHVEMAA 212 LNG + L V+ AA Sbjct: 77 LNGREFSGRALRVDNAA 93
>CSTF2_HUMAN (P33240) Cleavage stimulation factor, 64 kDa subunit (CSTF 64 kDa| subunit) (CF-1 64 kDa subunit) (CstF-64) Length = 577 Score = 45.4 bits (106), Expect = 1e-04 Identities = 25/77 (32%), Positives = 39/77 (50%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 SV V N+ + E L ++F G V + D++TG +G+GF + +E A A+ Sbjct: 17 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 76 Query: 262 LNGYGYDNLILHVEMAA 212 LNG + L V+ AA Sbjct: 77 LNGREFSGRALRVDNAA 93
>RBM23_HUMAN (Q86U06) Probable RNA-binding protein 23 (RNA-binding motif protein| 23) (RNA-binding region-containing protein 4) (Splicing factor SF2) Length = 439 Score = 45.4 bits (106), Expect = 1e-04 Identities = 21/59 (35%), Positives = 34/59 (57%) Frame = -3 Query: 427 NLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNGY 251 N++ED L +F FG + + + D TG S+G+GF+ F E A +A+ +LNG+ Sbjct: 273 NITEDM----LRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGF 327
>RNPC1_MOUSE (Q62176) RNA-binding region-containing protein 1 (ssDNA binding| protein SEB4) Length = 237 Score = 45.4 bits (106), Expect = 1e-04 Identities = 30/93 (32%), Positives = 40/93 (43%) Frame = -3 Query: 535 PAKGSYVAPRLRAGAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRV 356 PA V PR A A H R+ + V L T + L + F FG + Sbjct: 5 PACSPSVFPRPSAAP---SAMHGSRKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEA 61 Query: 355 YVAVDQKTGMSRGFGFVNFVHREDAEKAISKLN 257 V D++TG SRG+GFV R A++A N Sbjct: 62 VVITDRQTGKSRGYGFVTMADRAAADRACKDPN 94
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 45.1 bits (105), Expect = 1e-04 Identities = 28/76 (36%), Positives = 41/76 (53%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 +V V NL D RE ++ +LF +G V ++ + V + G+ FV F DAE AI Sbjct: 8 TVYVGNLPGDIREREVEDLFSKYGPVVQIDLKVPPRPP---GYAFVEFDDARDAEDAIHG 64 Query: 262 LNGYGYDNLILHVEMA 215 +GY +D L VE+A Sbjct: 65 RDGYDFDGHRLRVELA 80
>CTF1_SCHPO (O43040) Cleavage and termination factor 1 (Transcription| termination factor ctf1) Length = 363 Score = 45.1 bits (105), Expect = 1e-04 Identities = 25/81 (30%), Positives = 36/81 (44%) Frame = -3 Query: 445 NSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAIS 266 N V V N+ D E + E+F G V + +D +TG +G+GF F E A+ Sbjct: 7 NVVFVGNIPYDVSEQQMTEIFNQVGPVKTFKLVLDPETGSGKGYGFCEFFDSETTAMAVR 66 Query: 265 KLNGYGYDNLILHVEMAAPRP 203 KLN + VE + P Sbjct: 67 KLNNSELGPRKIRVEFPSNDP 87
>RO31_XENLA (P51968) Heterogeneous nuclear ribonucleoprotein A3 homolog 1| (hnRNP A3(A)) Length = 373 Score = 45.1 bits (105), Expect = 1e-04 Identities = 29/109 (26%), Positives = 49/109 (44%) Frame = -3 Query: 481 DAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVN 302 D GHD + + + LS +T + L E F +G ++ V D +T SRGFGFV Sbjct: 15 DQGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVT 74 Query: 301 FVHREDAEKAISKLNGYGYDNLILHVEMAAPRPT*LLPTKHSDIPSVMV 155 + E+ + ++S + D ++ + A R P H + + V Sbjct: 75 YSCVEEVDASMS-ARPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFV 122 Score = 38.5 bits (88), Expect = 0.013 Identities = 17/55 (30%), Positives = 29/55 (52%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI 269 V + EDT E L + ++G + + V D+++G RGF FV F + +K + Sbjct: 122 VGGIKEDTEEYHLRDYSESYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176
>IST3_YEAST (P40565) U2 snRNP component IST3 (U2 snRNP protein SNU17)| (Increased sodium tolerance protein 3) Length = 148 Score = 45.1 bits (105), Expect = 1e-04 Identities = 22/83 (26%), Positives = 41/83 (49%) Frame = -3 Query: 451 DENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKA 272 D + + NL+ + E D+L +F +G V ++ D+ TG S+GF ++ + + A Sbjct: 29 DNAYIYIGNLNRELTEGDILTVFSEYGVPVDVILSRDENTGESQGFAYLKYEDQRSTILA 88 Query: 271 ISKLNGYGYDNLILHVEMAAPRP 203 + LNG+ L ++ RP Sbjct: 89 VDNLNGFKIGGRALKIDHTFYRP 111
>YG41_SCHPO (O60176) Hypothetical RNA-binding protein C23E6.01c in chromosome| II Length = 473 Score = 45.1 bits (105), Expect = 1e-04 Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 1/82 (1%) Frame = -3 Query: 448 ENSVRVTNLSEDTREPDLLELFRT-FGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKA 272 E S+ V +LS + E D+ LF + + + + D +T +SRG+GFV F D + A Sbjct: 185 EYSIFVGDLSPNVNEFDVYSLFASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSA 244 Query: 271 ISKLNGYGYDNLILHVEMAAPR 206 ++++ G + + V +A P+ Sbjct: 245 LAEMQGQICGDRPIRVGLATPK 266 Score = 44.3 bits (103), Expect = 2e-04 Identities = 28/69 (40%), Positives = 40/69 (57%) Frame = -3 Query: 445 NSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAIS 266 ++V V LS+ E +L LF+ FG + VYV + +G GFV FV+R+ AE AI+ Sbjct: 303 STVFVGGLSKFVSEEELKYLFQNFGEI--VYVKIPP----GKGCGFVQFVNRQSAEIAIN 356 Query: 265 KLNGYGYDN 239 +L GY N Sbjct: 357 QLQGYPLGN 365
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 45.1 bits (105), Expect = 1e-04 Identities = 24/90 (26%), Positives = 47/90 (52%) Frame = -3 Query: 520 YVAPRLRAGAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVD 341 YVA + + G D+ + ++ + + V + D E +L+ LF G + + + +D Sbjct: 47 YVAGQRKYGGPPPDSVYSGQQPSVGTEIFVGKIPRDLFEDELVPLFEKAGPIWDLRLMMD 106 Query: 340 QKTGMSRGFGFVNFVHREDAEKAISKLNGY 251 TG++RG+ FV F +E A++A+ N + Sbjct: 107 PLTGLNRGYAFVTFCTKEAAQEAVKLYNNH 136
>SRR35_HUMAN (Q8WXF0) 35 kDa SR repressor protein (SRrp35)| Length = 261 Score = 45.1 bits (105), Expect = 1e-04 Identities = 24/67 (35%), Positives = 35/67 (52%) Frame = -3 Query: 457 RNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAE 278 R S+ + N+++ TR DL F +G + VY+ +D T RGF +V F DAE Sbjct: 6 RPPNTSLFIRNVADATRPEDLRREFGRYGPIVDVYIPLDFYTRRPRGFAYVQFEDVRDAE 65 Query: 277 KAISKLN 257 A+ LN Sbjct: 66 DALYNLN 72
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 45.1 bits (105), Expect = 1e-04 Identities = 27/67 (40%), Positives = 35/67 (52%) Frame = -3 Query: 457 RNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAE 278 RN + ++ V L E E L EL G V V + D+ T +GFGFV F+ EDA+ Sbjct: 9 RNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDAD 68 Query: 277 KAISKLN 257 AI LN Sbjct: 69 YAIKILN 75 Score = 41.6 bits (96), Expect = 0.002 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRV-YVAVDQKTGMSRGFGFVNFVHREDAEKAIS 266 ++ V NL + E L + F FG + +V + D +G S+GF F+NF E ++ A+ Sbjct: 101 NIFVGNLDPEVDEKLLYDTFSAFGVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALE 160 Query: 265 KLNGYGYDNLILHVEMAAPR 206 +NG N + V A R Sbjct: 161 AMNGQFLCNRAITVSYAFKR 180
>SFRS9_MOUSE (Q9D0B0) Splicing factor, arginine/serine-rich 9| Length = 222 Score = 45.1 bits (105), Expect = 1e-04 Identities = 30/83 (36%), Positives = 39/83 (46%) Frame = -3 Query: 469 DMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHR 290 D R + + V NL D RE DL +LF +G + + + + G+ F FV F Sbjct: 7 DERGGEGDGRIYVGNLPSDVREKDLEDLFYKYGRIREI--ELKNRHGLVP-FAFVRFEDP 63 Query: 289 EDAEKAISKLNGYGYDNLILHVE 221 DAE AI NGY Y L VE Sbjct: 64 RDAEDAIYGRNGYDYGQCRLRVE 86
>HNRPG_RAT (P84586) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 45.1 bits (105), Expect = 1e-04 Identities = 23/73 (31%), Positives = 36/73 (49%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 + L+ +T E L +F +G + + + D++T SRGF FV F DA+ +NG Sbjct: 12 IGGLNTETNEKALEAVFGKYGRIVEILLMKDRETNKSRGFAFVTFESPADAKDVARDMNG 71 Query: 253 YGYDNLILHVEMA 215 D + VE A Sbjct: 72 KSLDGKAIKVEQA 84
>GRP1_DAUCA (Q03878) Glycine-rich RNA-binding protein| Length = 157 Score = 44.7 bits (104), Expect = 2e-04 Identities = 26/76 (34%), Positives = 37/76 (48%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V L+ T + L + F FG ++ + D++TG SRGFGFV F + AI +NG Sbjct: 10 VGGLAWATNDESLEQAFSQFGDITDSKIINDRETGRSRGFGFVTFKDEKSMRDAIEGMNG 69 Query: 253 YGYDNLILHVEMAAPR 206 D + V A R Sbjct: 70 QELDGRNITVNEAQSR 85
>SFRS9_RAT (Q5PPI1) Splicing factor, arginine/serine-rich 9| Length = 221 Score = 44.7 bits (104), Expect = 2e-04 Identities = 30/83 (36%), Positives = 39/83 (46%) Frame = -3 Query: 469 DMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHR 290 D R + + V NL D RE DL +LF +G + + + + G+ F FV F Sbjct: 6 DERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREI--ELKNRHGLVP-FAFVRFEDP 62 Query: 289 EDAEKAISKLNGYGYDNLILHVE 221 DAE AI NGY Y L VE Sbjct: 63 RDAEDAIYGRNGYDYGQCRLRVE 85
>SFRS9_HUMAN (Q13242) Splicing factor, arginine/serine-rich 9 (Pre-mRNA-splicing| factor SRp30C) Length = 221 Score = 44.7 bits (104), Expect = 2e-04 Identities = 30/83 (36%), Positives = 39/83 (46%) Frame = -3 Query: 469 DMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHR 290 D R + + V NL D RE DL +LF +G + + + + G+ F FV F Sbjct: 6 DERGGEGDGRIYVGNLPTDVREKDLEDLFYKYGRIREI--ELKNRHGLVP-FAFVRFEDP 62 Query: 289 EDAEKAISKLNGYGYDNLILHVE 221 DAE AI NGY Y L VE Sbjct: 63 RDAEDAIYGRNGYDYGQCRLRVE 85
>PABP_YEAST (P04147) Polyadenylate-binding protein, cytoplasmic and nuclear| (Poly(A)-binding protein) (PABP) (ARS consensus-binding protein ACBP-67) (Polyadenylate tail-binding protein) Length = 576 Score = 44.7 bits (104), Expect = 2e-04 Identities = 24/69 (34%), Positives = 36/69 (52%) Frame = -3 Query: 460 RRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDA 281 R+ ++ + NL D L + F FG + +A D+ G S+GFGFV+F A Sbjct: 120 RKKGSGNIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDEN-GKSKGFGFVHFEEEGAA 178 Query: 280 EKAISKLNG 254 ++AI LNG Sbjct: 179 KEAIDALNG 187 Score = 44.3 bits (103), Expect = 2e-04 Identities = 30/88 (34%), Positives = 44/88 (50%) Frame = -3 Query: 520 YVAPRLRAGAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVD 341 YVAP L D+ + + + N + V N++ +T + ELF FG + + D Sbjct: 196 YVAPHL--SRKERDSQLEETKAHYTN-LYVKNINSETTDEQFQELFAKFGPIVSASLEKD 252 Query: 340 QKTGMSRGFGFVNFVHREDAEKAISKLN 257 G +GFGFVN+ EDA KA+ LN Sbjct: 253 AD-GKLKGFGFVNYEKHEDAVKAVEALN 279 Score = 42.7 bits (99), Expect = 7e-04 Identities = 24/66 (36%), Positives = 33/66 (50%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 N S+ V +L E L ++F G+VS + V D T S G+ +VNF E K Sbjct: 34 NSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGRK 93 Query: 274 AISKLN 257 AI +LN Sbjct: 94 AIEQLN 99 Score = 37.7 bits (86), Expect = 0.022 Identities = 22/59 (37%), Positives = 33/59 (55%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLN 257 V NL + + L E F +G ++ V + + G S+GFGFV F E+A KAI++ N Sbjct: 325 VKNLDDSVDDEKLEEEFAPYGTITSAKV-MRTENGKSKGFGFVCFSTPEEATKAITEKN 382
>BOULE_DROME (Q24207) Protein boule| Length = 228 Score = 44.7 bits (104), Expect = 2e-04 Identities = 21/57 (36%), Positives = 34/57 (59%) Frame = -3 Query: 445 NSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 N + V +S DT E DL +F +G V + VD + G+S+G+GFV F ++A++ Sbjct: 33 NRIFVGGISGDTTEADLTRVFSAYGTVKSTKIIVD-RAGVSKGYGFVTFETEQEAQR 88
>MRD1_YARLI (Q6CEW9) Multiple RNA-binding domain-containing protein 1| Length = 828 Score = 44.7 bits (104), Expect = 2e-04 Identities = 22/74 (29%), Positives = 37/74 (50%) Frame = -3 Query: 427 NLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNGYG 248 NL +E D +LF +G + V++ ++ KTG +GF V F E+A A +G Sbjct: 307 NLLYTAKEEDFRQLFSQYGELEEVHLPINTKTGQCKGFAHVQFEDPENAIAAYEAQDGKI 366 Query: 247 YDNLILHVEMAAPR 206 + +LH+ P+ Sbjct: 367 FQGRLLHILPGKPK 380 Score = 38.9 bits (89), Expect = 0.010 Identities = 21/65 (32%), Positives = 36/65 (55%) Frame = -3 Query: 448 ENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI 269 ++ + + NL + + D+ +LF FG++ V V + SRGF F +V ++AE A+ Sbjct: 702 DSKILIKNLPFEATKKDVQKLFGAFGSLKTVRVP-KKFNSESRGFAFAEYVSAKEAEHAM 760 Query: 268 SKLNG 254 S L G Sbjct: 761 SALQG 765
>NOP4_YEAST (P37838) Nucleolar protein NOP4 (Nucleolar protein NOP77)| Length = 685 Score = 44.7 bits (104), Expect = 2e-04 Identities = 24/82 (29%), Positives = 42/82 (51%) Frame = -3 Query: 451 DENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKA 272 D ++ V ++ +D + L + F F + V D SRGFGFV+F +D ++A Sbjct: 24 DMKTLFVRSIPQDVTDEQLADFFSNFAPIKHAVVVKDTNK-RSRGFGFVSFAVEDDTKEA 82 Query: 271 ISKLNGYGYDNLILHVEMAAPR 206 ++K ++ IL V++A R Sbjct: 83 LAKARKTKFNGHILRVDIAKRR 104 Score = 38.9 bits (89), Expect = 0.010 Identities = 21/78 (26%), Positives = 37/78 (47%) Frame = -3 Query: 463 RRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHRED 284 + + ++ SV V N+ D E L F FG+V +D+ TG+++G FV F + Sbjct: 284 QNKREDFSVFVRNVPYDATEESLAPHFSKFGSVKYALPVIDKSTGLAKGTAFVAFKDQYT 343 Query: 283 AEKAISKLNGYGYDNLIL 230 + I G +L++ Sbjct: 344 YNECIKNAPAAGSTSLLI 361
>PPIE_DROME (Q9V3G3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 300 Score = 44.7 bits (104), Expect = 2e-04 Identities = 23/82 (28%), Positives = 40/82 (48%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 ND+ ++ V L+++ E L F FG ++ + + D ++ RGF F+ + EDA Sbjct: 3 NDKRTIYVGGLADEVTERLLNNAFIPFGDIADIQMPADYESQRHRGFAFIEYEQSEDAAA 62 Query: 274 AISKLNGYGYDNLILHVEMAAP 209 AI +N + V +A P Sbjct: 63 AIDNMNDSELCGRTIRVNLAKP 84
>NUCL_XENLA (P20397) Nucleolin (Protein C23)| Length = 650 Score = 44.3 bits (103), Expect = 2e-04 Identities = 29/76 (38%), Positives = 41/76 (53%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V LSEDT E L E F G+V+ + D+ TG S+GFGFV+F EDA+ A + Sbjct: 506 VRGLSEDTTEETLKEAFD--GSVN-ARIVTDRDTGASKGFGFVDFSTAEDAKAAKEAMED 562 Query: 253 YGYDNLILHVEMAAPR 206 D + ++ A P+ Sbjct: 563 GEIDGNKVTLDFAKPK 578 Score = 37.7 bits (86), Expect = 0.022 Identities = 23/94 (24%), Positives = 39/94 (41%) Frame = -3 Query: 496 GAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRG 317 G ++G+ D + V NLS E L E+F + + Q G ++G Sbjct: 397 GEKSQNSGNKKGPEGDSKVLVVNNLSYSATEDSLREVFE-----KATSIRIPQNQGRAKG 451 Query: 316 FGFVNFVHREDAEKAISKLNGYGYDNLILHVEMA 215 F F+ F EDA+ A+ N + + +E + Sbjct: 452 FAFIEFSSAEDAKDAMDSCNNTEIEGRSIRLEFS 485 Score = 32.0 bits (71), Expect = 1.2 Identities = 20/63 (31%), Positives = 34/63 (53%) Frame = -3 Query: 442 SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISK 263 S+ + NL+ +L + R F + + + D + G S+ FG+V+F E+ EKA+ K Sbjct: 233 SIFIGNLNSTKEFDELKDALREFFSKKNLTIQ-DIRIGNSKKFGYVDFSSEEEVEKAL-K 290 Query: 262 LNG 254 L G Sbjct: 291 LTG 293
>RBM8A_MOUSE (Q9CWZ3) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) Length = 174 Score = 44.3 bits (103), Expect = 2e-04 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Frame = -3 Query: 538 GPAKGSYVAPRLRAGAVHTDAGHDMRRRNDENSVR-VTNLSEDTREPDLLELFRTFGAVS 362 G +GS R +V D +R+ E + VT + E+ E D+ + F +G + Sbjct: 41 GSEEGSRARMREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIK 100 Query: 361 RVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 +++ +D++TG +G+ V + ++A+ A+ LNG Sbjct: 101 NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG 136
>RBM8A_HUMAN (Q9Y5S9) RNA-binding protein 8A (RNA-binding motif protein 8A)| (Ribonucleoprotein RBM8A) (RNA-binding protein Y14) (Binder of OVCA1-1) (BOV-1) Length = 174 Score = 44.3 bits (103), Expect = 2e-04 Identities = 25/96 (26%), Positives = 49/96 (51%), Gaps = 1/96 (1%) Frame = -3 Query: 538 GPAKGSYVAPRLRAGAVHTDAGHDMRRRNDENSVR-VTNLSEDTREPDLLELFRTFGAVS 362 G +GS R +V D +R+ E + VT + E+ E D+ + F +G + Sbjct: 41 GSEEGSRARMREDYDSVEQDGDEPGPQRSVEGWILFVTGVHEEATEEDIHDKFAEYGEIK 100 Query: 361 RVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 +++ +D++TG +G+ V + ++A+ A+ LNG Sbjct: 101 NIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNG 136
>HNRPG_MOUSE (O35479) Heterogeneous nuclear ribonucleoprotein G (hnRNP G)| (RNA-binding motif protein, X chromosome) Length = 388 Score = 44.3 bits (103), Expect = 2e-04 Identities = 23/73 (31%), Positives = 36/73 (49%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 + L+ +T E L +F +G + + + D++T SRGF FV DA+ A +NG Sbjct: 12 IGGLNTETNEKALEAVFGKYGRIVEIILMKDRETNKSRGFAFVTLESPADAKDAARDMNG 71 Query: 253 YGYDNLILHVEMA 215 D + VE A Sbjct: 72 KSLDGKAIKVEQA 84
>RO22_XENLA (P51990) Heterogeneous nuclear ribonucleoprotein A2 homolog 2| (hnRNP A2(B)) Length = 358 Score = 43.9 bits (102), Expect = 3e-04 Identities = 19/55 (34%), Positives = 29/55 (52%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI 269 V + EDT E L E F +G + + D+++G RGFGFV F + +K + Sbjct: 104 VGGIKEDTEEHHLREYFEEYGKIESTEIITDKQSGKKRGFGFVTFNDHDPVDKIV 158 Score = 36.2 bits (82), Expect = 0.063 Identities = 25/103 (24%), Positives = 43/103 (41%) Frame = -3 Query: 463 RRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHRED 284 R + + + LS +T E L + +G ++ V D + SRGFGFV F + Sbjct: 3 REKEQFRKLFIGGLSFETTEESLRNFYEQWGQLTDCVVMRDPASKRSRGFGFVTFSCMNE 62 Query: 283 AEKAISKLNGYGYDNLILHVEMAAPRPT*LLPTKHSDIPSVMV 155 + A+S + D ++ + A R P H + + V Sbjct: 63 VDAAMS-ARPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFV 104
>ROA2_MOUSE (O88569) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 341 Score = 43.9 bits (102), Expect = 3e-04 Identities = 18/55 (32%), Positives = 30/55 (54%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI 269 V + EDT E L + F +G + + + D+++G RGFGFV F + +K + Sbjct: 104 VGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 158 Score = 34.7 bits (78), Expect = 0.18 Identities = 24/103 (23%), Positives = 43/103 (41%) Frame = -3 Query: 463 RRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHRED 284 R + + + LS +T E L + +G ++ V D + SRGFGFV F + Sbjct: 3 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 62 Query: 283 AEKAISKLNGYGYDNLILHVEMAAPRPT*LLPTKHSDIPSVMV 155 + A++ + D ++ + A R P H + + V Sbjct: 63 VDAAMA-ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFV 104
>ROA3_RAT (Q6URK4) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 43.9 bits (102), Expect = 3e-04 Identities = 28/109 (25%), Positives = 49/109 (44%) Frame = -3 Query: 481 DAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVN 302 + GHD + + + LS +T + L E F +G ++ V D +T SRGFGFV Sbjct: 23 EEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVT 82 Query: 301 FVHREDAEKAISKLNGYGYDNLILHVEMAAPRPT*LLPTKHSDIPSVMV 155 + E+ + A+ + D ++ + A R + P H + + V Sbjct: 83 YSCVEEVDAAMC-ARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFV 130 Score = 41.6 bits (96), Expect = 0.002 Identities = 18/55 (32%), Positives = 30/55 (54%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI 269 V + EDT E +L + F +G + + V D+++G RGF FV F + +K + Sbjct: 130 VGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>ROA3_MOUSE (Q8BG05) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 379 Score = 43.9 bits (102), Expect = 3e-04 Identities = 28/109 (25%), Positives = 49/109 (44%) Frame = -3 Query: 481 DAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVN 302 + GHD + + + LS +T + L E F +G ++ V D +T SRGFGFV Sbjct: 23 EEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVT 82 Query: 301 FVHREDAEKAISKLNGYGYDNLILHVEMAAPRPT*LLPTKHSDIPSVMV 155 + E+ + A+ + D ++ + A R + P H + + V Sbjct: 83 YSCVEEVDAAMC-ARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFV 130 Score = 41.6 bits (96), Expect = 0.002 Identities = 18/55 (32%), Positives = 30/55 (54%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI 269 V + EDT E +L + F +G + + V D+++G RGF FV F + +K + Sbjct: 130 VGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>ROA2_HUMAN (P22626) Heterogeneous nuclear ribonucleoproteins A2/B1 (hnRNP A2 /| hnRNP B1) Length = 353 Score = 43.9 bits (102), Expect = 3e-04 Identities = 18/55 (32%), Positives = 30/55 (54%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI 269 V + EDT E L + F +G + + + D+++G RGFGFV F + +K + Sbjct: 116 VGGIKEDTEEHHLRDYFEEYGKIDTIEIITDRQSGKKRGFGFVTFDDHDPVDKIV 170 Score = 34.7 bits (78), Expect = 0.18 Identities = 24/103 (23%), Positives = 43/103 (41%) Frame = -3 Query: 463 RRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHRED 284 R + + + LS +T E L + +G ++ V D + SRGFGFV F + Sbjct: 15 REKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAE 74 Query: 283 AEKAISKLNGYGYDNLILHVEMAAPRPT*LLPTKHSDIPSVMV 155 + A++ + D ++ + A R P H + + V Sbjct: 75 VDAAMA-ARPHSIDGRVVEPKRAVAREESGKPGAHVTVKKLFV 116
>ROA3_HUMAN (P51991) Heterogeneous nuclear ribonucleoprotein A3 (hnRNP A3)| Length = 378 Score = 43.9 bits (102), Expect = 3e-04 Identities = 28/109 (25%), Positives = 49/109 (44%) Frame = -3 Query: 481 DAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVN 302 + GHD + + + LS +T + L E F +G ++ V D +T SRGFGFV Sbjct: 23 EEGHDPKEPEQLRKLFIGGLSFETTDDSLREHFEKWGTLTDCVVMRDPQTKRSRGFGFVT 82 Query: 301 FVHREDAEKAISKLNGYGYDNLILHVEMAAPRPT*LLPTKHSDIPSVMV 155 + E+ + A+ + D ++ + A R + P H + + V Sbjct: 83 YSCVEEVDAAMC-ARPHKVDGRVVEPKRAVSREDSVKPGAHLTVKKIFV 130 Score = 41.6 bits (96), Expect = 0.002 Identities = 18/55 (32%), Positives = 30/55 (54%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI 269 V + EDT E +L + F +G + + V D+++G RGF FV F + +K + Sbjct: 130 VGGIKEDTEEYNLRDYFEKYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 184
>RBM28_HUMAN (Q9NW13) RNA-binding protein 28 (RNA-binding motif protein 28)| Length = 758 Score = 43.5 bits (101), Expect = 4e-04 Identities = 27/89 (30%), Positives = 45/89 (50%), Gaps = 6/89 (6%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 N+ +V + NLS D+ E +L EL + FG + V + + T S+G F F+ +E A+K Sbjct: 331 NEGKTVFIRNLSFDSEEEELGELLQQFGELKYVRIVLHPDTEHSKGCAFAQFMTQEAAQK 390 Query: 274 AI------SKLNGYGYDNLILHVEMAAPR 206 + ++ G D L V++A R Sbjct: 391 CLLAASPENEAGGLKLDGRQLKVDLAVTR 419 Score = 39.7 bits (91), Expect = 0.006 Identities = 24/59 (40%), Positives = 32/59 (54%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLN 257 + NLS E DL +F FGAV V + + G RGFGFV F + +A KA+ +N Sbjct: 117 IRNLSFKCSEDDLKTVFAQFGAVLEVNIP-RKPDGKMRGFGFVQFKNLLEAGKALKGMN 174 Score = 39.3 bits (90), Expect = 0.007 Identities = 19/61 (31%), Positives = 31/61 (50%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V L R L ELF G V + +V ++ + RGFG+V F ED ++A+ ++ Sbjct: 7 VGRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMLEDVQRALKEITT 66 Query: 253 Y 251 + Sbjct: 67 F 67
>RBM8A_DROME (Q9V535) RNA-binding protein 8A (Protein tsunagi)| Length = 165 Score = 43.5 bits (101), Expect = 4e-04 Identities = 18/60 (30%), Positives = 36/60 (60%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 VT++ E+ +E ++ E F +G + +++ +D++TG S+G+ V + + A A LNG Sbjct: 77 VTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNG 136
>SAP49_SCHPO (O14102) Spliceosome-associated protein 49| Length = 335 Score = 43.5 bits (101), Expect = 4e-04 Identities = 22/67 (32%), Positives = 33/67 (49%) Frame = -3 Query: 457 RNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAE 278 RN + ++ + NL E + L EL G V +++ D+ GFGF F+H +D E Sbjct: 7 RNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDVE 66 Query: 277 KAISKLN 257 A LN Sbjct: 67 YACQILN 73 Score = 32.7 bits (73), Expect = 0.70 Identities = 22/76 (28%), Positives = 33/76 (43%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NL E L + F G + + + G S+G+GFV++ E A+ AI +N Sbjct: 103 VGNLDPLVDERVLYDTFSALGQLVKAPQVARDENGRSKGYGFVSYDSFETADAAIEAMNN 162 Query: 253 YGYDNLILHVEMAAPR 206 N + V A R Sbjct: 163 QFLMNKPITVSYAFKR 178
>MK67I_BRARE (Q8JIY8) MKI67 FHA domain-interacting nucleolar phosphoprotein-like| (Nucleolar phosphoprotein NOPP34-like protein) Length = 269 Score = 43.5 bits (101), Expect = 4e-04 Identities = 26/75 (34%), Positives = 36/75 (48%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V +L EP L F FG V R+ V+ +KTG S+G+GFV F E A+ +N Sbjct: 49 VGHLPRGLFEPQLKSYFEQFGKVLRLRVSRSKKTGGSKGYGFVEFECDEVAKIVAETMNN 108 Query: 253 YGYDNLILHVEMAAP 209 Y I+ + P Sbjct: 109 YLMGERIIKCHVIPP 123
>RBM11_HUMAN (P57052) Putative RNA-binding protein 11 (RNA-binding motif protein| 11) Length = 281 Score = 43.5 bits (101), Expect = 4e-04 Identities = 26/65 (40%), Positives = 36/65 (55%) Frame = -3 Query: 448 ENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI 269 + +V V NL RE L ELF G +++V + D++ G + FGFV F H E AI Sbjct: 9 DRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAI 67 Query: 268 SKLNG 254 + LNG Sbjct: 68 ALLNG 72
>RO32_XENLA (P51992) Heterogeneous nuclear ribonucleoprotein A3 homolog 2| (hnRNP A3(B)) Length = 385 Score = 43.5 bits (101), Expect = 4e-04 Identities = 28/109 (25%), Positives = 49/109 (44%) Frame = -3 Query: 481 DAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVN 302 D GH+ + + + LS +T + L E F +G ++ V D +T SRGFGFV Sbjct: 15 DQGHEPKEPEQLRKLFIGGLSFETTDDSLREHFEQWGKLTDCVVMRDPQTKRSRGFGFVT 74 Query: 301 FVHREDAEKAISKLNGYGYDNLILHVEMAAPRPT*LLPTKHSDIPSVMV 155 + E+ + ++S + D ++ + A R P H + + V Sbjct: 75 YSCVEEVDASMS-ARPHKVDGRVVEPKRAVSREDSARPGAHLTVKKIFV 122 Score = 40.4 bits (93), Expect = 0.003 Identities = 18/55 (32%), Positives = 29/55 (52%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI 269 V + EDT E L + F +G + + V D+++G RGF FV F + +K + Sbjct: 122 VGGIKEDTEEYHLRDYFEGYGKIETIEVMEDRQSGKKRGFAFVTFDDHDTVDKIV 176
>GRP2_SINAL (P49311) Glycine-rich RNA-binding protein GRP2A| Length = 169 Score = 43.1 bits (100), Expect = 5e-04 Identities = 27/76 (35%), Positives = 36/76 (47%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V L+ T E L F FG + + D++TG SRGFGFV F + + AI +NG Sbjct: 12 VGGLAWATDERSLETAFSQFGELVDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNG 71 Query: 253 YGYDNLILHVEMAAPR 206 D + V A R Sbjct: 72 QDLDGRSITVNEAQSR 87
>TRA2_DROVI (O02008) Transformer-2 sex-determining protein| Length = 272 Score = 43.1 bits (100), Expect = 5e-04 Identities = 23/73 (31%), Positives = 36/73 (49%) Frame = -3 Query: 439 VRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKL 260 + V L+ +T + + ELF FG + R+ + +D T SRGF F+ F + DA A Sbjct: 107 IGVFGLNTNTTQQKVRELFNKFGPIERIQMVIDAHTHRSRGFCFIYFENLGDARVAKDAC 166 Query: 259 NGYGYDNLILHVE 221 G D + V+ Sbjct: 167 TGMEVDGRRIRVD 179
>PPIL4_GIBZE (Q4IE79) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 605 Score = 43.1 bits (100), Expect = 5e-04 Identities = 25/78 (32%), Positives = 39/78 (50%) Frame = -3 Query: 448 ENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI 269 EN + V L+ T + DL +F FG + V DQKTG S + F+ + + E A Sbjct: 250 ENVLFVCKLNPVTGDEDLELIFGRFGKILSCEVIRDQKTGDSLQYAFIEYEDKASCEAAY 309 Query: 268 SKLNGYGYDNLILHVEMA 215 K+ G D+ +HV+ + Sbjct: 310 FKMQGVLIDDRRIHVDFS 327
>RNPC1_HUMAN (Q9H0Z9) RNA-binding region-containing protein 1 (HSRNASEB) (ssDNA| binding protein SEB4) (CLL-associated antigen KW-5) Length = 216 Score = 43.1 bits (100), Expect = 5e-04 Identities = 23/72 (31%), Positives = 33/72 (45%) Frame = -3 Query: 472 HDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVH 293 H ++ + V L T + L + F FG + V D++TG SRG+GFV Sbjct: 2 HGSQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMAD 61 Query: 292 REDAEKAISKLN 257 R AE+A N Sbjct: 62 RAAAERACKDPN 73
>GRPA_MAIZE (P10979) Glycine-rich RNA-binding, abscisic acid-inducible protein| Length = 157 Score = 42.7 bits (99), Expect = 7e-04 Identities = 26/76 (34%), Positives = 34/76 (44%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V L+ T L F ++G + V D++TG SRGFGFV F AI +NG Sbjct: 12 VGGLAWATSNESLENAFASYGEILDSKVITDRETGRSRGFGFVTFSSENSMLDAIENMNG 71 Query: 253 YGYDNLILHVEMAAPR 206 D + V A R Sbjct: 72 KELDGRNITVNQAQSR 87
>RO21_XENLA (P51989) Heterogeneous nuclear ribonucleoprotein A2 homolog 1| (hnRNP A2(A)) Length = 346 Score = 42.7 bits (99), Expect = 7e-04 Identities = 18/55 (32%), Positives = 29/55 (52%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI 269 V + EDT E L E F +G + + + D+++G RGF FV F + +K + Sbjct: 104 VGGIKEDTEEHHLREYFEEYGKIDSIEIITDKQSGKKRGFAFVTFDDHDPVDKIV 158 Score = 35.0 bits (79), Expect = 0.14 Identities = 24/103 (23%), Positives = 43/103 (41%) Frame = -3 Query: 463 RRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHRED 284 R + + + LS +T E L + +G ++ V D + SRGFGFV F + Sbjct: 3 REKEQFRKLFIGGLSFETTEESLRNYYEQWGTLTDCVVMRDPASKRSRGFGFVTFSCMNE 62 Query: 283 AEKAISKLNGYGYDNLILHVEMAAPRPT*LLPTKHSDIPSVMV 155 + A++ + D ++ + A R P H + + V Sbjct: 63 VDAAMA-TRPHTIDGRVVEPKRAVAREESAKPGAHVTVKKLFV 104
>NCBP2_XENLA (P52299) Nuclear cap binding protein subunit 2 (20 kDa nuclear cap| binding protein) (NCBP 20 kDa subunit) (CBP20) (Fragment) Length = 148 Score = 42.4 bits (98), Expect = 9e-04 Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 7/94 (7%) Frame = -3 Query: 472 HDMRRRNDENSVR-------VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGF 314 H R+D+ S+ V NLS T E + ELF G V R+ + +D+ + GF Sbjct: 16 HFRGNRSDQESLLKQSCTLYVGNLSFYTTEEQIHELFSKSGDVKRIVMGLDKVKKTACGF 75 Query: 313 GFVNFVHREDAEKAISKLNGYGYDNLILHVEMAA 212 FV + R DA A+ +NG D+ I+ + A Sbjct: 76 CFVEYYTRADAGTAMRFINGTRLDDRIVRTDWDA 109
>LARK_DROME (Q94901) RNA-binding protein lark| Length = 352 Score = 42.4 bits (98), Expect = 9e-04 Identities = 29/97 (29%), Positives = 47/97 (48%), Gaps = 1/97 (1%) Frame = -3 Query: 493 AVHTDAGHDMRRRNDENS-VRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRG 317 A+ +A R N + + V NL++ TR P++ ELF+ +G V + R Sbjct: 69 AIKVEAAKSRRAPNTPTTKIFVGNLTDKTRAPEVRELFQKYGTVVECDIV--------RN 120 Query: 316 FGFVNFVHREDAEKAISKLNGYGYDNLILHVEMAAPR 206 +GFV+ D + AI +LNG D L V+++ R Sbjct: 121 YGFVHLDCVGDVQDAIKELNGRVVDGQPLKVQVSTSR 157 Score = 38.5 bits (88), Expect = 0.013 Identities = 25/83 (30%), Positives = 35/83 (42%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 + NL E T+ +L LF +G V V + +GFV+ + AI LNG Sbjct: 11 IGNLDEKTQATELRALFEKYGTVVECDVV--------KNYGFVHMETEQQGRDAIQNLNG 62 Query: 253 YGYDNLILHVEMAAPRPT*LLPT 185 Y + + VE A R PT Sbjct: 63 YTLNEFAIKVEAAKSRRAPNTPT 85
>RBY1A_HUMAN (Q15414) RNA-binding motif protein, Y chromosome, family 1 member| A1 (RNA-binding motif protein 1) Length = 496 Score = 42.0 bits (97), Expect = 0.001 Identities = 24/73 (32%), Positives = 36/73 (49%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 + L+ +T E L +F G +S V + D +T SRGF F+ F + DA+ A +NG Sbjct: 12 IGGLNRETNEKMLKAVFGKHGPISEVLLIKD-RTSKSRGFAFITFENPADAKNAAKDMNG 70 Query: 253 YGYDNLILHVEMA 215 + VE A Sbjct: 71 KSLHGKAIKVEQA 83
>GAR2_SCHPO (P41891) Protein gar2| Length = 500 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/84 (27%), Positives = 47/84 (55%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 N+ +V V LS + + L + F +G + V +D ++G S+G+G+V+F E A+ Sbjct: 260 NETCTVFVGRLSWNVDDQWLGQEFEEYGTIVGARVIMDGQSGRSKGYGYVDFETPEAAKA 319 Query: 274 AISKLNGYGYDNLILHVEMAAPRP 203 A++ D +++++++ PRP Sbjct: 320 AVAANGTKEIDGRMVNLDLSNPRP 343 Score = 40.8 bits (94), Expect = 0.003 Identities = 23/80 (28%), Positives = 42/80 (52%) Frame = -3 Query: 445 NSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAIS 266 ++V V NLS + E DL F G + + + D ++G +GFG+V F + A+K + Sbjct: 366 DTVFVGNLSFNATEDDLSTAFGGCGDIQSIRLPTDPQSGRLKGFGYVTFSDIDSAKKCV- 424 Query: 265 KLNGYGYDNLILHVEMAAPR 206 ++NG+ ++ + PR Sbjct: 425 EMNGHFIAGRPCRLDFSTPR 444
>ROA1_XENLA (P17130) Heterogeneous nuclear ribonucleoproteins A1 homolog (hnRNP| A1) (Helix-destabilizing protein) (Single-strand binding protein) (hnRNP core protein A1) Length = 365 Score = 42.0 bits (97), Expect = 0.001 Identities = 18/55 (32%), Positives = 28/55 (50%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI 269 V + EDT E L E F +G + + + D+ +G RGF FV F + +K + Sbjct: 109 VGGIKEDTEEDHLREYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFEDHDSVDKIV 163 Score = 38.5 bits (88), Expect = 0.013 Identities = 26/109 (23%), Positives = 48/109 (44%), Gaps = 3/109 (2%) Frame = -3 Query: 472 HDMRRRNDENSVR---VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVN 302 H N+ +R + LS +T + L E F +G ++ V D + SRGFGFV Sbjct: 2 HKSEAPNEPEQLRKLFIGGLSFETTDESLREHFEQWGTLTDCVVMRDPNSKRSRGFGFVT 61 Query: 301 FVHREDAEKAISKLNGYGYDNLILHVEMAAPRPT*LLPTKHSDIPSVMV 155 ++ ++ + A++ + D ++ + A R P H + + V Sbjct: 62 YLSTDEVDAAMT-ARPHKVDGRVVEPKRAVSREDSSRPGAHLTVKKIFV 109
>HRP1_YEAST (Q99383) Nuclear polyadenylated RNA-binding protein 4 (Cleavage| factor IB) (CFIB) Length = 534 Score = 42.0 bits (97), Expect = 0.001 Identities = 23/76 (30%), Positives = 39/76 (51%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 + L+ DT E +L E F +G V+ + + D TG SRGFGF++F ++ + Sbjct: 163 IGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQ 220 Query: 253 YGYDNLILHVEMAAPR 206 + D ++ + A PR Sbjct: 221 HILDGKVIDPKRAIPR 236 Score = 38.1 bits (87), Expect = 0.017 Identities = 21/76 (27%), Positives = 36/76 (47%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V + D R + E F +G + + +D+ TG SRGFGFV + DA + + Sbjct: 247 VGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTY-DSADAVDRVCQNKF 305 Query: 253 YGYDNLILHVEMAAPR 206 + + + ++ A PR Sbjct: 306 IDFKDRKIEIKRAEPR 321
>DAZL_MOUSE (Q64368) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 298 Score = 41.6 bits (96), Expect = 0.002 Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 1/67 (1%) Frame = -3 Query: 445 NSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI- 269 N+V V + E ++ F +G+V V + D +TG+S+G+GFV+F + D +K + Sbjct: 40 NTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITD-RTGVSKGYGFVSFYNDVDVQKIVE 98 Query: 268 SKLNGYG 248 S++N +G Sbjct: 99 SQINFHG 105
>DAZL_MACFA (Q95192) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 295 Score = 41.6 bits (96), Expect = 0.002 Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 1/67 (1%) Frame = -3 Query: 445 NSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI- 269 N+V V + E ++ F +G+V V + D +TG+S+G+GFV+F + D +K + Sbjct: 40 NTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITD-RTGVSKGYGFVSFFNDVDVQKIVE 98 Query: 268 SKLNGYG 248 S++N +G Sbjct: 99 SQINFHG 105
>DAZL_HUMAN (Q92904) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) (DAZ homolog) (SPGY-like-autosomal) Length = 295 Score = 41.6 bits (96), Expect = 0.002 Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 1/67 (1%) Frame = -3 Query: 445 NSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI- 269 N+V V + E ++ F +G+V V + D +TG+S+G+GFV+F + D +K + Sbjct: 40 NTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITD-RTGVSKGYGFVSFFNDVDVQKIVE 98 Query: 268 SKLNGYG 248 S++N +G Sbjct: 99 SQINFHG 105
>MSI1H_RAT (Q8K3P4) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 41.6 bits (96), Expect = 0.002 Identities = 26/83 (31%), Positives = 42/83 (50%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 +D + + LS T + L E F FG V V D T SRGFGFV F+ + +K Sbjct: 17 HDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDK 76 Query: 274 AISKLNGYGYDNLILHVEMAAPR 206 +++ + + D+ + ++A PR Sbjct: 77 VLAQ-SRHELDSKTIDPKVAFPR 98 Score = 40.4 bits (93), Expect = 0.003 Identities = 23/76 (30%), Positives = 38/76 (50%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V LS +T D+ F FG V + D+ T RGFGFV F ED + + +++ Sbjct: 113 VGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF-ESEDIVEKVCEIHF 171 Query: 253 YGYDNLILHVEMAAPR 206 + +N ++ + A P+ Sbjct: 172 HEINNKMVECKKAQPK 187
>MSI1H_MOUSE (Q61474) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 41.6 bits (96), Expect = 0.002 Identities = 26/83 (31%), Positives = 42/83 (50%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 +D + + LS T + L E F FG V V D T SRGFGFV F+ + +K Sbjct: 17 HDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDK 76 Query: 274 AISKLNGYGYDNLILHVEMAAPR 206 +++ + + D+ + ++A PR Sbjct: 77 VLAQ-SRHELDSKTIDPKVAFPR 98 Score = 40.4 bits (93), Expect = 0.003 Identities = 23/76 (30%), Positives = 38/76 (50%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V LS +T D+ F FG V + D+ T RGFGFV F ED + + +++ Sbjct: 113 VGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF-ESEDIVEKVCEIHF 171 Query: 253 YGYDNLILHVEMAAPR 206 + +N ++ + A P+ Sbjct: 172 HEINNKMVECKKAQPK 187
>MSI1H_HUMAN (O43347) RNA-binding protein Musashi homolog 1 (Musashi-1)| Length = 362 Score = 41.6 bits (96), Expect = 0.002 Identities = 26/83 (31%), Positives = 42/83 (50%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 +D + + LS T + L E F FG V V D T SRGFGFV F+ + +K Sbjct: 17 HDPCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDK 76 Query: 274 AISKLNGYGYDNLILHVEMAAPR 206 +++ + + D+ + ++A PR Sbjct: 77 VLAQ-SRHELDSKTIDPKVAFPR 98 Score = 41.2 bits (95), Expect = 0.002 Identities = 23/76 (30%), Positives = 39/76 (51%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V LS +T D+ + F FG V + D+ T RGFGFV F ED + + +++ Sbjct: 113 VGGLSVNTTVEDVKQYFEQFGKVDDAMLMFDKTTNRHRGFGFVTF-ESEDIVEKVCEIHF 171 Query: 253 YGYDNLILHVEMAAPR 206 + +N ++ + A P+ Sbjct: 172 HEINNKMVECKKAQPK 187
>PPIE_MOUSE (Q9QZH3) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 41.6 bits (96), Expect = 0.002 Identities = 24/75 (32%), Positives = 36/75 (48%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V L+E+ + L F FG ++ + + +D +T RGF FV F EDA AI +N Sbjct: 10 VGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE 69 Query: 253 YGYDNLILHVEMAAP 209 + V +A P Sbjct: 70 SELFGRTIRVNLAKP 84
>PPIE_HUMAN (Q9UNP9) Peptidyl-prolyl cis-trans isomerase E (EC 5.2.1.8) (PPIase| E) (Rotamase E) (Cyclophilin E) (Cyclophilin 33) Length = 301 Score = 41.6 bits (96), Expect = 0.002 Identities = 24/75 (32%), Positives = 36/75 (48%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V L+E+ + L F FG ++ + + +D +T RGF FV F EDA AI +N Sbjct: 10 VGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNE 69 Query: 253 YGYDNLILHVEMAAP 209 + V +A P Sbjct: 70 SELFGRTIRVNLAKP 84
>MSI2H_MOUSE (Q920Q6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 346 Score = 41.6 bits (96), Expect = 0.002 Identities = 23/76 (30%), Positives = 39/76 (51%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V LS +T D+ + F FG V + D+ T RGFGFV F ED + + +++ Sbjct: 114 VGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF-ENEDVVEKVCEIHF 172 Query: 253 YGYDNLILHVEMAAPR 206 + +N ++ + A P+ Sbjct: 173 HEINNKMVECKKAQPK 188 Score = 39.3 bits (90), Expect = 0.007 Identities = 24/84 (28%), Positives = 39/84 (46%) Frame = -3 Query: 457 RNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAE 278 ++D + + LS T L + F FG + V D T SRGFGFV F + Sbjct: 17 QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVD 76 Query: 277 KAISKLNGYGYDNLILHVEMAAPR 206 K + + + + D+ + ++A PR Sbjct: 77 KVLGQPH-HELDSKTIDPKVAFPR 99
>RNA15_YEAST (P25299) mRNA 3'-end-processing protein RNA15| Length = 296 Score = 41.6 bits (96), Expect = 0.002 Identities = 20/63 (31%), Positives = 33/63 (52%) Frame = -3 Query: 439 VRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKL 260 V + ++ D E +L+L G V + + D +TG S+G+ F+ F E + A+ L Sbjct: 20 VYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNL 79 Query: 259 NGY 251 NGY Sbjct: 80 NGY 82
>MSI2H_HUMAN (Q96DH6) RNA-binding protein Musashi homolog 2 (Musashi-2)| Length = 328 Score = 41.6 bits (96), Expect = 0.002 Identities = 23/76 (30%), Positives = 39/76 (51%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V LS +T D+ + F FG V + D+ T RGFGFV F ED + + +++ Sbjct: 114 VGGLSANTVVEDVKQYFEQFGKVEDAMLMFDKTTNRHRGFGFVTF-ENEDVVEKVCEIHF 172 Query: 253 YGYDNLILHVEMAAPR 206 + +N ++ + A P+ Sbjct: 173 HEINNKMVECKKAQPK 188 Score = 39.3 bits (90), Expect = 0.007 Identities = 24/84 (28%), Positives = 39/84 (46%) Frame = -3 Query: 457 RNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAE 278 ++D + + LS T L + F FG + V D T SRGFGFV F + Sbjct: 17 QHDPGKMFIGGLSWQTSPDSLRDYFSKFGEIRECMVMRDPTTKRSRGFGFVTFADPASVD 76 Query: 277 KAISKLNGYGYDNLILHVEMAAPR 206 K + + + + D+ + ++A PR Sbjct: 77 KVLGQPH-HELDSKTIDPKVAFPR 99
>SGN1_YEAST (P40561) RNA-binding protein SGN1| Length = 250 Score = 41.6 bits (96), Expect = 0.002 Identities = 21/73 (28%), Positives = 38/73 (52%) Frame = -3 Query: 472 HDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVH 293 H + D S+ V N++ D + + F+ G + R+ + D+ TG +G+G++ F Sbjct: 55 HAHQLEADSRSIFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFES 114 Query: 292 REDAEKAISKLNG 254 EKA+ +LNG Sbjct: 115 PAYREKAL-QLNG 126
>RNPS1_XENLA (Q5XG24) RNA-binding protein with serine-rich domain 1| Length = 283 Score = 41.6 bits (96), Expect = 0.002 Identities = 19/63 (30%), Positives = 38/63 (60%), Gaps = 1/63 (1%) Frame = -3 Query: 439 VRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQ-KTGMSRGFGFVNFVHREDAEKAISK 263 V + L+ + + +LE+F T+G + + + VD+ +S+G+ +V F E+AEKA+ Sbjct: 140 VHIGRLTRNVTKDHILEIFSTYGKIKMIDMPVDRYHPHLSKGYAYVEFEAPEEAEKALKH 199 Query: 262 LNG 254 ++G Sbjct: 200 MDG 202
>HNRPM_MOUSE (Q9D0E1) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 728 Score = 41.6 bits (96), Expect = 0.002 Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Frame = -3 Query: 541 GGPAKGSYVAPRLRAGAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVS 362 GGP + L + + H ++ ++V V NL L E+F G V Sbjct: 170 GGPGMINIPPSILNNPNIPNEIIHALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVV 229 Query: 361 RVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEM---AAPRPT*LL 191 R + D K G SRG G V F +A +AIS NG + +HV+M A P+ Sbjct: 230 RADILED-KDGKSRGIGIVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFP 288 Query: 190 PTKHSDIP 167 P + +P Sbjct: 289 PERPQQLP 296 Score = 31.6 bits (70), Expect = 1.6 Identities = 25/82 (30%), Positives = 34/82 (41%) Frame = -3 Query: 499 AGAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSR 320 AG+ GH + V NL D L + F G V +Y + + G S+ Sbjct: 633 AGSFGGAGGHAPGVARKACQIFVRNLPFDFTWKMLKDKFNECGHV--LYADIKMENGKSK 690 Query: 319 GFGFVNFVHREDAEKAISKLNG 254 G G V F E AE+A +NG Sbjct: 691 GCGVVKFESPEVAERACRMMNG 712
>THOC4_MOUSE (O08583) THO complex subunit 4 (Tho4) (RNA and export| factor-binding protein 1) (REF1-I) (Ally of AML-1 and LEF-1) (Aly/REF) Length = 254 Score = 41.2 bits (95), Expect = 0.002 Identities = 23/72 (31%), Positives = 39/72 (54%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V+NL + D+ ELF FG + + V D ++G S G V+F + DA KA+ + NG Sbjct: 108 VSNLDFGVSDADIQELFAEFGTLKKAAVHYD-RSGRSLGTADVHFERKADALKAMKQYNG 166 Query: 253 YGYDNLILHVEM 218 D +++++ Sbjct: 167 VPLDGRPMNIQL 178
>GRP1_SINAL (P49310) Glycine-rich RNA-binding protein GRP1A| Length = 166 Score = 41.2 bits (95), Expect = 0.002 Identities = 26/76 (34%), Positives = 36/76 (47%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V L+ T + L F +G V + D++TG SRGFGFV F + + AI +NG Sbjct: 12 VGGLAWATDDRALETAFSQYGEVLDSKIINDRETGRSRGFGFVTFKDEKSMKDAIEGMNG 71 Query: 253 YGYDNLILHVEMAAPR 206 D + V A R Sbjct: 72 QDLDGRSITVNEAQSR 87
>THOC4_HUMAN (Q86V81) THO complex subunit 4 (Tho4) (Ally of AML-1 and LEF-1)| (Transcriptional coactivator Aly/REF) (bZIP-enhancing factor BEF) Length = 256 Score = 41.2 bits (95), Expect = 0.002 Identities = 23/72 (31%), Positives = 39/72 (54%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V+NL + D+ ELF FG + + V D ++G S G V+F + DA KA+ + NG Sbjct: 109 VSNLDFGVSDADIQELFAEFGTLKKAAVHYD-RSGRSLGTADVHFERKADALKAMKQYNG 167 Query: 253 YGYDNLILHVEM 218 D +++++ Sbjct: 168 VPLDGRPMNIQL 179
>SFRS1_CHICK (Q5ZML3) Splicing factor, arginine/serine-rich 1| Length = 256 Score = 41.2 bits (95), Expect = 0.002 Identities = 26/78 (33%), Positives = 41/78 (52%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 N++ + V NL D R D+ ++F +GA+ + + +++ G F FV F DAE Sbjct: 12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLK-NRRGGPP--FAFVEFEDPRDAED 68 Query: 274 AISKLNGYGYDNLILHVE 221 A+ +GY YD L VE Sbjct: 69 AVYGRDGYDYDGYRLRVE 86
>SFRS1_PONPY (Q5R7H2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 41.2 bits (95), Expect = 0.002 Identities = 26/78 (33%), Positives = 41/78 (52%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 N++ + V NL D R D+ ++F +GA+ + + +++ G F FV F DAE Sbjct: 12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLK-NRRGGPP--FAFVEFEDPRDAED 68 Query: 274 AISKLNGYGYDNLILHVE 221 A+ +GY YD L VE Sbjct: 69 AVYGRDGYDYDGYRLRVE 86
>SFRS1_MOUSE (Q6PDM2) Splicing factor, arginine/serine-rich 1| Length = 247 Score = 41.2 bits (95), Expect = 0.002 Identities = 26/78 (33%), Positives = 41/78 (52%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 N++ + V NL D R D+ ++F +GA+ + + +++ G F FV F DAE Sbjct: 12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLK-NRRGGPP--FAFVEFEDPRDAED 68 Query: 274 AISKLNGYGYDNLILHVE 221 A+ +GY YD L VE Sbjct: 69 AVYGRDGYDYDGYRLRVE 86
>SFRS1_HUMAN (Q07955) Splicing factor, arginine/serine-rich 1 (pre-mRNA-splicing| factor SF2, P33 subunit) (Alternative splicing factor ASF-1) Length = 247 Score = 41.2 bits (95), Expect = 0.002 Identities = 26/78 (33%), Positives = 41/78 (52%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 N++ + V NL D R D+ ++F +GA+ + + +++ G F FV F DAE Sbjct: 12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLK-NRRGGPP--FAFVEFEDPRDAED 68 Query: 274 AISKLNGYGYDNLILHVE 221 A+ +GY YD L VE Sbjct: 69 AVYGRDGYDYDGYRLRVE 86
>RAVR2_MOUSE (Q7TPD6) Protein raver-2| Length = 673 Score = 41.2 bits (95), Expect = 0.002 Identities = 20/60 (33%), Positives = 34/60 (56%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 +TNL + EL R +G + R ++ + TG S+G+GFV ++ ++ A KA +L G Sbjct: 135 ITNLPISFTLEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLG 194
>RAVR2_HUMAN (Q9HCJ3) Protein raver-2| Length = 691 Score = 41.2 bits (95), Expect = 0.002 Identities = 19/60 (31%), Positives = 34/60 (56%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 +TN+ + EL R +G + R ++ + TG S+G+GFV ++ ++ A KA +L G Sbjct: 146 ITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDFAAKARLELLG 205
>GRP1_SORBI (Q99069) Glycine-rich RNA-binding protein 1 (Fragment)| Length = 142 Score = 41.2 bits (95), Expect = 0.002 Identities = 23/60 (38%), Positives = 30/60 (50%) Frame = -3 Query: 385 FRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEMAAPR 206 F T+G V + +D++T SRGFGFV F E AI +NG D + V A R Sbjct: 7 FSTYGEVLESKIILDRETQRSRGFGFVTFSTEEAMRSAIEGMNGKELDGRNITVNEAQSR 66
>RBM4_BRARE (Q6IQ97) RNA-binding protein 4 (RNA-binding motif protein 4)| Length = 419 Score = 41.2 bits (95), Expect = 0.002 Identities = 22/77 (28%), Positives = 41/77 (53%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V NLS +T ++ LF +G +S + + FGFV+ + +A++AI L+ Sbjct: 6 VGNLSPNTTAEEIRSLFSQYGKISECDIV--------KNFGFVHMDSKSEADEAIQNLHH 57 Query: 253 YGYDNLILHVEMAAPRP 203 Y + + ++VEM+ +P Sbjct: 58 YMLNGMAMNVEMSKGKP 74 Score = 29.3 bits (64), Expect = 7.8 Identities = 19/78 (24%), Positives = 34/78 (43%) Frame = -3 Query: 439 VRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKL 260 + V N+S +L F +G V + D + FV+ EDA +AIS L Sbjct: 80 LHVGNISSSCTNQELRAKFEEYGPVVECDIVKD--------YAFVHMERVEDAMEAISGL 131 Query: 259 NGYGYDNLILHVEMAAPR 206 + + ++ V+++ R Sbjct: 132 DNTAFQGKLMSVKLSTSR 149
>DAZP1_MOUSE (Q9JII5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 406 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/81 (29%), Positives = 39/81 (48%) Frame = -3 Query: 445 NSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAIS 266 N + V + + E +L E F+ FG V+ V + D + RGFGF+ F ED + Sbjct: 113 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF---EDEQSVDQ 169 Query: 265 KLNGYGYDNLILHVEMAAPRP 203 +N + +D + VE+ P Sbjct: 170 AVNMHFHDIMGKKVEVKRAEP 190 Score = 32.3 bits (72), Expect = 0.92 Identities = 17/45 (37%), Positives = 21/45 (46%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNF 299 V L T + L F +G V + D+ T SRGFGFV F Sbjct: 14 VGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 58
>DAZP1_HUMAN (Q96EP5) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) Length = 407 Score = 41.2 bits (95), Expect = 0.002 Identities = 24/81 (29%), Positives = 39/81 (48%) Frame = -3 Query: 445 NSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAIS 266 N + V + + E +L E F+ FG V+ V + D + RGFGF+ F ED + Sbjct: 113 NKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITF---EDEQSVDQ 169 Query: 265 KLNGYGYDNLILHVEMAAPRP 203 +N + +D + VE+ P Sbjct: 170 AVNMHFHDIMGKKVEVKRAEP 190 Score = 32.3 bits (72), Expect = 0.92 Identities = 17/45 (37%), Positives = 21/45 (46%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNF 299 V L T + L F +G V + D+ T SRGFGFV F Sbjct: 14 VGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 58
>SFRS1_XENTR (Q6DII2) Splicing factor, arginine/serine-rich 1| Length = 267 Score = 41.2 bits (95), Expect = 0.002 Identities = 26/78 (33%), Positives = 41/78 (52%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 N++ + V NL D R D+ ++F +GA+ + + +++ G F FV F DAE Sbjct: 13 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLK-NRRGGPP--FAFVEFEDPRDAED 69 Query: 274 AISKLNGYGYDNLILHVE 221 A+ +GY YD L VE Sbjct: 70 AVYGRDGYDYDGYRLRVE 87
>REFP2_MOUSE (Q9JJW6) RNA and export factor-binding protein 2| Length = 218 Score = 40.8 bits (94), Expect = 0.003 Identities = 24/74 (32%), Positives = 38/74 (51%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V+NL + D+ ELF FG + + V D ++G S G V+F R DA KA+ + G Sbjct: 79 VSNLDFGVSDADIQELFAEFGTLKKAAVDYD-RSGRSLGTADVHFERRADALKAMKQYKG 137 Query: 253 YGYDNLILHVEMAA 212 D + +++ A Sbjct: 138 VPLDGRPMDIQLVA 151
>U2AF2_SCHPO (P36629) Splicing factor U2AF 59 kDa subunit (U2 auxiliary factor| 59 kDa subunit) (U2 snRNP auxiliary factor large subunit) (U2AF59) Length = 517 Score = 40.8 bits (94), Expect = 0.003 Identities = 24/80 (30%), Positives = 41/80 (51%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 + ++ + ++NL + E ++EL + FG + + + G S+GF F F + DAE Sbjct: 307 DSKDKIYISNLPLNLGEDQVVELLKPFGDLLSFQLIKNIADGSSKGFCFCEFKNPSDAEV 366 Query: 274 AISKLNGYGYDNLILHVEMA 215 AIS L+G LH + A Sbjct: 367 AISGLDGKDTYGNKLHAQFA 386
>RBM5_HUMAN (P52756) RNA-binding protein 5 (RNA-binding motif protein 5)| (Putative tumor suppressor LUCA15) (G15 protein) (NY-REN-9 antigen) Length = 815 Score = 40.8 bits (94), Expect = 0.003 Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 1/68 (1%) Frame = -3 Query: 481 DAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAV-DQKTGMSRGFGFV 305 D HD+ + ++ + L E D+ E+ +F V + +KTG+SRGF FV Sbjct: 86 DYRHDISDERESKTIMLRGLPITITESDIREMMESFEGPQPADVRLMKRKTGVSRGFAFV 145 Query: 304 NFVHREDA 281 F H +DA Sbjct: 146 EFYHLQDA 153
>RBMS1_MOUSE (Q91W59) RNA-binding motif, single-stranded-interacting protein 1| (Single-stranded DNA-binding protein MSSP-1) Length = 403 Score = 40.8 bits (94), Expect = 0.003 Identities = 19/67 (28%), Positives = 37/67 (55%) Frame = -3 Query: 448 ENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI 269 + ++ + L +T + DL++L + +G + +D+ T +G+GFV+F A+KA+ Sbjct: 61 KTNLYIRGLPPNTTDQDLVKLCQPYGKIVSTKAILDKATNKCKGYGFVDFDSPAAAQKAV 120 Query: 268 SKLNGYG 248 S L G Sbjct: 121 SALKANG 127 Score = 37.0 bits (84), Expect = 0.037 Identities = 26/94 (27%), Positives = 37/94 (39%) Frame = -3 Query: 535 PAKGSYVAPRLRAGAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRV 356 PA L+A V ++ D ++ ++NL E +L + + FG V Sbjct: 113 PAAAQKAVSALKANGVQAQMAK--QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVIST 170 Query: 355 YVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V D +G SRG GF E E I NG Sbjct: 171 RVLRDS-SGASRGVGFARMESTEKCEAVIGHFNG 203
>HNRPM_HUMAN (P52272) Heterogeneous nuclear ribonucleoprotein M (hnRNP M)| Length = 729 Score = 40.8 bits (94), Expect = 0.003 Identities = 37/128 (28%), Positives = 54/128 (42%), Gaps = 3/128 (2%) Frame = -3 Query: 541 GGPAKGSYVAPRLRAGAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVS 362 GGP + L + + H ++ ++V V NL L E+F G V Sbjct: 171 GGPGMITIPPSILNNPNIPNEIIHALQAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVV 230 Query: 361 RVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNGYGYDNLILHVEM---AAPRPT*LL 191 R + D K G SRG G V F +A +AIS NG + +HV+M A P+ Sbjct: 231 RADILED-KDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERALPKGDFFP 289 Query: 190 PTKHSDIP 167 P + +P Sbjct: 290 PERPQQLP 297 Score = 31.6 bits (70), Expect = 1.6 Identities = 25/82 (30%), Positives = 34/82 (41%) Frame = -3 Query: 499 AGAVHTDAGHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSR 320 AG+ GH + V NL D L + F G V +Y + + G S+ Sbjct: 634 AGSFGGAGGHAPGVARKACQIFVRNLPFDFTWKMLKDKFNECGHV--LYADIKMENGKSK 691 Query: 319 GFGFVNFVHREDAEKAISKLNG 254 G G V F E AE+A +NG Sbjct: 692 GCGVVKFESPEVAERACRMMNG 713
>SFRS1_BRARE (Q6NYA0) Splicing factor, arginine/serine-rich 1| Length = 245 Score = 40.8 bits (94), Expect = 0.003 Identities = 26/78 (33%), Positives = 41/78 (52%) Frame = -3 Query: 454 NDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEK 275 N++ + V NL D R D+ ++F +GA+ + + +++ G F FV F DAE Sbjct: 12 NNDCRIYVGNLPPDIRTKDVEDVFYKYGAIRDIDLK-NRRGGPP--FAFVEFEDPRDAED 68 Query: 274 AISKLNGYGYDNLILHVE 221 A+ +GY YD L VE Sbjct: 69 AVYGRDGYDYDGYRLRVE 86
>DAZL_CALJA (Q9BGN8) Deleted in azoospermia-like (DAZ-like autosomal) (Deleted| in azoospermia-like 1) Length = 296 Score = 40.8 bits (94), Expect = 0.003 Identities = 22/67 (32%), Positives = 40/67 (59%), Gaps = 1/67 (1%) Frame = -3 Query: 445 NSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAI- 269 N+V V + E ++ F +G+V V + D +TG+S+G+GFV+F + D +K + Sbjct: 40 NTVFVGGIDVRMDETEIRGFFARYGSVKEVKIITD-RTGVSKGYGFVSFFNDVDVQKIVE 98 Query: 268 SKLNGYG 248 S++N +G Sbjct: 99 SQINFHG 105
>DAZP1_XENLA (Q98SJ2) DAZ-associated protein 1 (Deleted in| azoospermia-associated protein 1) (Proline-rich Vg1 mRNA-binding protein) Length = 360 Score = 40.4 bits (93), Expect = 0.003 Identities = 24/81 (29%), Positives = 38/81 (46%) Frame = -3 Query: 445 NSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAIS 266 N + V + + E +L E F FG V+ V + D + RGFGF+ F ED + Sbjct: 114 NKIFVGGIPHNCGETELKEYFNRFGVVTEVVMIYDAEKQRPRGFGFITF---EDEQSVDQ 170 Query: 265 KLNGYGYDNLILHVEMAAPRP 203 +N + +D + VE+ P Sbjct: 171 AVNMHFHDIMGKKVEVKRAEP 191 Score = 32.3 bits (72), Expect = 0.92 Identities = 17/45 (37%), Positives = 21/45 (46%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNF 299 V L T + L F +G V + D+ T SRGFGFV F Sbjct: 14 VGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKF 58
>FCA_ARATH (O04425) Flowering time control protein FCA| Length = 747 Score = 40.4 bits (93), Expect = 0.003 Identities = 24/60 (40%), Positives = 34/60 (56%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V +L++ E ++ E+F FG V VY+ D+ SRG GFV + +E A AI LNG Sbjct: 215 VGSLNKQATEKEVEEIFLQFGHVEDVYLMRDEYR-QSRGCGFVKYSSKETAMAAIDGLNG 273 Score = 35.8 bits (81), Expect = 0.083 Identities = 20/73 (27%), Positives = 36/73 (49%) Frame = -3 Query: 475 GHDMRRRNDENSVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFV 296 G D+ R+ + V ++ E ++ F G V V + D++TG +G FV + Sbjct: 110 GTDVSDRSSTVKLFVGSVPRTATEEEIRPYFEQHGNVLEVALIKDKRTGQQQGCCFVKYA 169 Query: 295 HREDAEKAISKLN 257 +DA++AI L+ Sbjct: 170 TSKDADRAIRALH 182
>RSP41_ARATH (P92966) Arginine/serine-rich splicing factor RSP41| Length = 356 Score = 40.4 bits (93), Expect = 0.003 Identities = 25/61 (40%), Positives = 28/61 (45%) Frame = -3 Query: 427 NLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNGYG 248 N D RE DL LFR +G V RV M GF FV DAE AI L+ + Sbjct: 8 NFEYDARESDLERLFRKYGKVERV--------DMKAGFAFVYMEDERDAEDAIRALDRFE 59 Query: 247 Y 245 Y Sbjct: 60 Y 60 Score = 30.4 bits (67), Expect = 3.5 Identities = 18/69 (26%), Positives = 32/69 (46%) Frame = -3 Query: 421 SEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNGYGYD 242 +++TR DL F +G + V + R F F+ + +EDA +A+ N Sbjct: 105 AQNTRTRDLERHFEPYGKIVNVRIR--------RNFAFIQYEAQEDATRALDATNSSKLM 156 Query: 241 NLILHVEMA 215 + ++ VE A Sbjct: 157 DKVISVEYA 165
>ROA1_CAEEL (Q22037) Heterogeneous nuclear ribonucleoprotein A1| Length = 346 Score = 40.4 bits (93), Expect = 0.003 Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 8/84 (9%) Frame = -3 Query: 469 DMRRRNDEN----SVRVTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVN 302 D + R++ N + V+ + ED E L E F +G V++ + +D+ T RGFGFV Sbjct: 102 DDKNRSESNVSTKRLYVSGVREDHTEDMLTEYFTKYGTVTKSEIILDKATQKPRGFGFVT 161 Query: 301 FVHREDAEKAISK----LNGYGYD 242 F + ++ + + +NG+ D Sbjct: 162 FDDHDSVDQCVLQKSHMVNGHRCD 185 Score = 38.1 bits (87), Expect = 0.017 Identities = 23/76 (30%), Positives = 38/76 (50%) Frame = -3 Query: 433 VTNLSEDTREPDLLELFRTFGAVSRVYVAVDQKTGMSRGFGFVNFVHREDAEKAISKLNG 254 V L+ +T + + E + FG ++ + V D T SRGFGFV F + + + A+ K Sbjct: 27 VGGLTSNTTDDLMREFYSQFGEITDIIVMRDPTTKRSRGFGFVTFSGKTEVDAAM-KQRP 85 Query: 253 YGYDNLILHVEMAAPR 206 + D + + A PR Sbjct: 86 HIIDGKTVDPKRAVPR 101 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 75,646,634 Number of Sequences: 219361 Number of extensions: 1492374 Number of successful extensions: 5079 Number of sequences better than 10.0: 366 Number of HSP's better than 10.0 without gapping: 4559 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5032 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4488201198 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
