Clone Name | rbasd27o07 |
---|---|
Clone Library Name | barley_pub |
>FA18_ARATH (Q8LEK2) FAM18-like protein At1g09330| Length = 186 Score = 154 bits (389), Expect(2) = 5e-56 Identities = 75/105 (71%), Positives = 84/105 (80%) Frame = -1 Query: 595 GNSVWKFECLDGESLARMNKKDSWLFWWTLYLNAAAWIILAIFSLIRLEADYLLVVGVCL 416 G SVWKFE LD ESLARMNKKDSWLFWWTLYL AAAW IL +FSLIR +ADYLLVVGVCL Sbjct: 83 GESVWKFESLDQESLARMNKKDSWLFWWTLYLAAAAWFILGVFSLIRFQADYLLVVGVCL 142 Query: 415 TLSLANIVGFTKCNKDAKKNIRAFAENAAQNAITSRITSSLQSAF 281 +L++ANI+GFTKC KDAKK + F A I SR S++QSAF Sbjct: 143 SLNVANIIGFTKCKKDAKKQFQQF----ASQTIASRFQSTVQSAF 183 Score = 84.0 bits (206), Expect(2) = 5e-56 Identities = 39/44 (88%), Positives = 42/44 (95%) Frame = -3 Query: 731 SLFVKSFVIIFVITVLLAALDFWVVKNVSGRILVGLRWWNEIDD 600 +LF SFVIIFV+TVLLAALDFWVVKNVSGRILVGLRWWNEI+D Sbjct: 38 ALFFNSFVIIFVVTVLLAALDFWVVKNVSGRILVGLRWWNEIND 81
>FA18_DROME (Q8IQC1) FAM18-like protein CG5021| Length = 223 Score = 63.9 bits (154), Expect(2) = 5e-22 Identities = 26/43 (60%), Positives = 32/43 (74%) Frame = -3 Query: 725 FVKSFVIIFVITVLLAALDFWVVKNVSGRILVGLRWWNEIDDE 597 F SF+ FV VL + DFW VKN+SGR+LVGLRWWN +DD+ Sbjct: 61 FSDSFITSFVFVVLFLSADFWTVKNISGRLLVGLRWWNYVDDD 103 Score = 60.5 bits (145), Expect(2) = 5e-22 Identities = 31/87 (35%), Positives = 51/87 (58%), Gaps = 1/87 (1%) Frame = -1 Query: 598 NGNSVWKFECLDGESL-ARMNKKDSWLFWWTLYLNAAAWIILAIFSLIRLEADYLLVVGV 422 +G S W FE + ES +R+NK + +FW L L W + +F+L L+ +LL+V + Sbjct: 103 DGVSHWVFESKNSESYQSRVNKNEQRIFWLGLILCPVFWGLFFLFALFGLKFKWLLLVMI 162 Query: 421 CLTLSLANIVGFTKCNKDAKKNIRAFA 341 + L+ AN+ G+ KCN A K++ + A Sbjct: 163 AIALNAANLYGYVKCNYGANKDLNSAA 189
>FA18_DICDI (Q86I95) Hypothetical FAM18-like protein| Length = 198 Score = 64.3 bits (155), Expect(2) = 9e-22 Identities = 32/101 (31%), Positives = 58/101 (57%) Frame = -1 Query: 610 RLTTNGNSVWKFECLDGESLARMNKKDSWLFWWTLYLNAAAWIILAIFSLIRLEADYLLV 431 ++ +G + W FE + +S ++N +S +FW + AAW + +I SL L +L+V Sbjct: 95 QIKEDGTNNWVFESVQDKS--QVNPAESLMFWVPVLAFTAAWFVFSIISLFGLSFLWLVV 152 Query: 430 VGVCLTLSLANIVGFTKCNKDAKKNIRAFAENAAQNAITSR 308 VC L+ AN++G+ KC KDA+K ++ A++ I ++ Sbjct: 153 EIVCFLLAGANLLGYIKCAKDARKKVKGMAQSYIVGTIVNQ 193 Score = 59.3 bits (142), Expect(2) = 9e-22 Identities = 24/39 (61%), Positives = 31/39 (79%) Frame = -3 Query: 713 FVIIFVITVLLAALDFWVVKNVSGRILVGLRWWNEIDDE 597 FV+ F+I L +A DFWV KNV+GR LVGLRWWN+I ++ Sbjct: 61 FVLTFIIVTLSSAFDFWVTKNVTGRKLVGLRWWNQIKED 99
>FA18B_MOUSE (Q9D8T4) Protein FAM18B| Length = 205 Score = 60.1 bits (144), Expect(2) = 2e-16 Identities = 24/44 (54%), Positives = 32/44 (72%) Frame = -3 Query: 728 LFVKSFVIIFVITVLLAALDFWVVKNVSGRILVGLRWWNEIDDE 597 L SF+ V +LL + DFW VKNV+GR++VGLRWWN ID++ Sbjct: 56 LLSSSFIACMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDED 99 Score = 45.4 bits (106), Expect(2) = 2e-16 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Frame = -1 Query: 598 NGNSVWKFECLDG--ESLARMNKKDSWLFWWTLYLNAAAWIILAIFSLIRLEADYLLVVG 425 +G S W FE + +++ +S +FW L W+I A +L +L VV Sbjct: 99 DGKSHWVFESRKSTPQDNKTISEAESRIFWLGLIACPVLWVIFAFSALFSFRVKWLAVVI 158 Query: 424 VCLTLSLANIVGFTKCNKDAKKNIRAFA 341 + + L AN+ G+ +C +KKN+ + A Sbjct: 159 MGVVLQGANLYGYIRCKVGSKKNLTSMA 186
>FA18B_PONPY (Q5R9I4) Protein FAM18B| Length = 205 Score = 60.1 bits (144), Expect(2) = 3e-16 Identities = 24/44 (54%), Positives = 32/44 (72%) Frame = -3 Query: 728 LFVKSFVIIFVITVLLAALDFWVVKNVSGRILVGLRWWNEIDDE 597 L SF+ V +LL + DFW VKNV+GR++VGLRWWN ID++ Sbjct: 56 LLSSSFITCMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDED 99 Score = 45.1 bits (105), Expect(2) = 3e-16 Identities = 25/88 (28%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Frame = -1 Query: 598 NGNSVWKFECLDGESLAR--MNKKDSWLFWWTLYLNAAAWIILAIFSLIRLEADYLLVVG 425 +G S W FE S +++ +S +FW L W+I A +L +L VV Sbjct: 99 DGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACPVLWVIFAFSALFSFRVKWLAVVI 158 Query: 424 VCLTLSLANIVGFTKCNKDAKKNIRAFA 341 + + L AN+ G+ +C ++KN+ + A Sbjct: 159 MGVVLQGANLYGYIRCKVGSRKNLTSMA 186
>FA18B_HUMAN (Q9NYZ1) Protein FAM18B| Length = 205 Score = 60.1 bits (144), Expect(2) = 1e-15 Identities = 24/44 (54%), Positives = 32/44 (72%) Frame = -3 Query: 728 LFVKSFVIIFVITVLLAALDFWVVKNVSGRILVGLRWWNEIDDE 597 L SF+ V +LL + DFW VKNV+GR++VGLRWWN ID++ Sbjct: 56 LLSSSFITCMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDED 99 Score = 42.7 bits (99), Expect(2) = 1e-15 Identities = 24/88 (27%), Positives = 43/88 (48%), Gaps = 2/88 (2%) Frame = -1 Query: 598 NGNSVWKFECLDGESLAR--MNKKDSWLFWWTLYLNAAAWIILAIFSLIRLEADYLLVVG 425 +G S W FE S +++ +S +FW L W+I A +L +L VV Sbjct: 99 DGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACPVLWVIFAFSALFSFRVKWLAVVI 158 Query: 424 VCLTLSLANIVGFTKCNKDAKKNIRAFA 341 + + L AN+ G+ +C ++K++ + A Sbjct: 159 MGVVLQGANLYGYIRCKVRSRKHLTSMA 186
>TVP23_YEAST (P38962) TLG2-vesicle protein of 23 kDa| Length = 199 Score = 52.0 bits (123), Expect(2) = 2e-13 Identities = 22/58 (37%), Positives = 36/58 (62%) Frame = -1 Query: 544 MNKKDSWLFWWTLYLNAAAWIILAIFSLIRLEADYLLVVGVCLTLSLANIVGFTKCNK 371 +N DS LFWW++Y+ W + A+ L+RL+ YL++V V + L+ N GF C++ Sbjct: 101 INAIDSKLFWWSMYVTPVIWGVFAVLCLLRLKIFYLILVIVAMCLTAWNTYGFRCCDR 158 Score = 43.1 bits (100), Expect(2) = 2e-13 Identities = 20/44 (45%), Positives = 30/44 (68%) Frame = -3 Query: 731 SLFVKSFVIIFVITVLLAALDFWVVKNVSGRILVGLRWWNEIDD 600 S+F+ +F F+ VLL + DF++ KN++GR LV LRWW + D Sbjct: 38 SMFL-NFTPQFITVVLLLSFDFYLTKNITGRKLVQLRWWYDSTD 80
>F18B2_HUMAN (Q96ET8) Protein FAM18B2| Length = 276 Score = 60.1 bits (144), Expect(2) = 7e-11 Identities = 24/44 (54%), Positives = 32/44 (72%) Frame = -3 Query: 728 LFVKSFVIIFVITVLLAALDFWVVKNVSGRILVGLRWWNEIDDE 597 L SF+ V +LL + DFW VKNV+GR++VGLRWWN ID++ Sbjct: 56 LLSSSFITCMVTIILLLSCDFWAVKNVTGRLMVGLRWWNHIDED 99 Score = 26.6 bits (57), Expect(2) = 7e-11 Identities = 15/56 (26%), Positives = 25/56 (44%), Gaps = 2/56 (3%) Frame = -1 Query: 598 NGNSVWKFECLDGESLAR--MNKKDSWLFWWTLYLNAAAWIILAIFSLIRLEADYL 437 +G S W FE S +++ +S +FW L + W+I A +L +L Sbjct: 99 DGKSHWVFESRKESSQENKTVSEAESRIFWLGLIACSVLWVIFAFSALFSFTVKWL 154
>YGI5_SCHPO (Q9Y7K7) Hypothetical protein C2A9.05c in chromosome II| Length = 219 Score = 63.2 bits (152), Expect = 8e-10 Identities = 34/100 (34%), Positives = 51/100 (51%) Frame = -1 Query: 598 NGNSVWKFECLDGESLARMNKKDSWLFWWTLYLNAAAWIILAIFSLIRLEADYLLVVGVC 419 +G S+W FE D N D FW+ LYL WIIL I ++IR E +L +V V Sbjct: 113 DGESIWIFESADPSR--PRNAVDQKTFWYALYLYPFIWIILGIVAIIRFEFLWLALVAVA 170 Query: 418 LTLSLANIVGFTKCNKDAKKNIRAFAENAAQNAITSRITS 299 + L+ N +++C+KDAK+ ++ + SR S Sbjct: 171 IGLTSVNTAAYSRCDKDAKRRWATELADSNSSGFVSRFLS 210 Score = 56.2 bits (134), Expect = 1e-07 Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 2/65 (3%) Frame = -3 Query: 725 FVKSFVIIFVITVLLAALDFWVVKNVSGRILVGLRWWNE--IDDEW*QCVEVRVPRRGVS 552 F SF+++F++ L A+D W VKNVSGR+LVGLRW NE +D E E P R + Sbjct: 71 FTSSFMLLFIVIFTLLAVDLWTVKNVSGRLLVGLRWRNETGVDGESIWIFESADPSRPRN 130 Query: 551 RSDEQ 537 D++ Sbjct: 131 AVDQK 135
>YC2L_CAEEL (Q18449) Hypothetical protein C34D4.4 in chromosome IV| Length = 247 Score = 61.2 bits (147), Expect = 3e-09 Identities = 22/43 (51%), Positives = 34/43 (79%) Frame = -3 Query: 731 SLFVKSFVIIFVITVLLAALDFWVVKNVSGRILVGLRWWNEID 603 + F SF++ F++ + L ++DFW VKN++GR+LVGLRWWN +D Sbjct: 94 NFFTNSFIVQFLVILTLLSMDFWTVKNITGRLLVGLRWWNFVD 136 Score = 48.5 bits (114), Expect = 2e-05 Identities = 25/102 (24%), Positives = 52/102 (50%) Frame = -1 Query: 634 WSGFVGGMRLTTNGNSVWKFECLDGESLARMNKKDSWLFWWTLYLNAAAWIILAIFSLIR 455 W FV +GN+ WKFE + + R D +FW L + AAWI + + + Sbjct: 131 WWNFVDA-----DGNNHWKFE--SAKDMTRFATIDRRVFWLGLVVGPAAWIFFVVTAFLT 183 Query: 454 LEADYLLVVGVCLTLSLANIVGFTKCNKDAKKNIRAFAENAA 329 L+ ++++V + +++AN+ G+ +C + + + ++ + A Sbjct: 184 LKFEWMIVALLGALMNMANLWGYLRCRWNNTEQMTSYFQKWA 225
>YB1E_SCHPO (P87179) Serine-rich protein C30B4.01c precursor| Length = 374 Score = 33.5 bits (75), Expect = 0.70 Identities = 30/107 (28%), Positives = 39/107 (36%), Gaps = 1/107 (0%) Frame = +1 Query: 415 SSKLXXXXXXXXXXXXVKISQE*SMQQRSSKESTRTAMSLFCSSERETPRRGTRTSTHCY 594 SS S S SS S+ ++ S SS P + +S+H Sbjct: 161 SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSVPITSSTSSSHSS 220 Query: 595 HSSSISFHQRSPTSILPLTFFTTQKSSAARSTV-MTKMMTKLFTKSE 732 SSS S S +F TT SS STV +T + T SE Sbjct: 221 SSSSSSSSSSSSRPSSSSSFITTMSSSTFISTVTVTPSSSSSSTSSE 267
>DPO3A_MYCGE (Q49405) DNA polymerase III alpha subunit (EC 2.7.7.7)| Length = 874 Score = 32.3 bits (72), Expect = 1.6 Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 8/112 (7%) Frame = -1 Query: 484 IILAIFSLIRLEADYLLVVGVCLTLSLANIVGFTKC--NKDAK---KNIRAFAENAAQNA 320 I+ + ++ + + +V V SL F + KD K KN R F E A QN Sbjct: 614 IVKNTYGVLIFQEQIINIVKVVANYSLEEADSFRRAISKKDVKLIQKNKRNFFERAVQNN 673 Query: 319 ITSRITSSLQS---AFGI*SPDYTEAQNYIQLCYLLSKISL*YPVFM*FWLI 173 + T+ + S F + + A Y L Y + + YPV+ WL+ Sbjct: 674 FDLKTTTKIFSYIERFANYGFNLSHALGYALLSYWTAWLKTNYPVYFYLWLL 725
>WSC4_YEAST (P38739) Cell wall integrity and stress response component 4| precursor Length = 605 Score = 31.2 bits (69), Expect = 3.5 Identities = 30/78 (38%), Positives = 33/78 (42%), Gaps = 2/78 (2%) Frame = +1 Query: 484 SMQQRSSKESTRTAMSLFCSSERETPRRGTRTSTHCYHSSS--ISFHQRSPTSILPLTFF 657 S SS ST T S S T T TST SSS S +PTS TF Sbjct: 232 STSTSSSSSSTPTTTSSAPISTSTTSSTSTSTSTTSPTSSSAPTSSSNTTPTS---TTFT 288 Query: 658 TTQKSSAARSTVMTKMMT 711 TT S+A ST +T T Sbjct: 289 TTSPSTAPSSTTVTYTST 306
>NHX7_ARATH (Q9LKW9) Sodium/hydrogen exchanger 7 (Na(+)/H(+) exchanger 7)| (NHE-7) (Protein SALT OVERLY SENSITIVE 1) Length = 1146 Score = 30.8 bits (68), Expect = 4.5 Identities = 16/38 (42%), Positives = 24/38 (63%) Frame = -3 Query: 710 VIIFVITVLLAALDFWVVKNVSGRILVGLRWWNEIDDE 597 V + VI + L +L++ N+ G+I G+R WNEID E Sbjct: 63 VALLVIGIALGSLEYGAKHNL-GKIGHGIRIWNEIDPE 99
>PCLO_MOUSE (Q9QYX7) Protein piccolo (Aczonin) (Multidomain presynaptic| cytomatrix protein) (Brain-derived HLMN protein) Length = 5038 Score = 30.8 bits (68), Expect = 4.5 Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 8/76 (10%) Frame = -2 Query: 402 QTSWGSPNATKMPRRTSELLLKMPLKTPSHPASHHP--------CSQHSASEVQITQRPK 247 Q G P+A + + S+ + PL+ P A+ P C + +E+ + K Sbjct: 458 QPGLGKPSAQQPSKSISQTVTGRPLQAPPTSAAQAPAQGLSKTICPLCNTTELLLHTPEK 517 Query: 246 ITYNCVTFCQRSACDI 199 +N T CQ + C + Sbjct: 518 ANFNTCTECQSTVCSL 533 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,761,430 Number of Sequences: 219361 Number of extensions: 1926404 Number of successful extensions: 5998 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 5770 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5997 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7649585595 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)