ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27o05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1HMEN_DROME (P02836) Segmentation polarity homeobox protein engra... 32 2.0
2GSPD2_DICD3 (Q01565) General secretion pathway protein D precurs... 31 3.5
3AMY3_SCHPO (O14154) Probable alpha-amylase meu30 precursor (EC 3... 30 5.9
4NFYA2_ARATH (Q9M9X4) Nuclear transcription factor Y subunit A-2 ... 30 7.7
5EPL1_DEBHA (Q6BNX0) Enhancer of polycomb-like protein 1 30 7.7

>HMEN_DROME (P02836) Segmentation polarity homeobox protein engrailed|
          Length = 552

 Score = 32.0 bits (71), Expect = 2.0
 Identities = 18/55 (32%), Positives = 24/55 (43%)
 Frame = -1

Query: 524 PSAKSPMESSDTVGSANDNNSKSSSCTEIAFSSNHEESLRLGGRPRNISFSGESP 360
           P A +    S T   A  ++S SS C+  A S N   S RLG     ++ S   P
Sbjct: 330 PPASNASTISSTSSVATSSSSSSSGCSSAASSLNSSPSSRLGASGSGVNASSPQP 384



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>GSPD2_DICD3 (Q01565) General secretion pathway protein D precursor (Pectic|
           enzymes secretion protein outD)
          Length = 710

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 19/70 (27%), Positives = 36/70 (51%)
 Frame = -1

Query: 521 SAKSPMESSDTVGSANDNNSKSSSCTEIAFSSNHEESLRLGGRPRNISFSGESPSTKLHI 342
           S+ +   SS + GS++ ++S SSS + + F S    +   GG  R I+  G+  + + H 
Sbjct: 312 SSSNSNSSSGSSGSSSGSSSSSSSSSSMGFGSAFGSTSSSGG--RTITIQGKEVTVRAHD 369

Query: 341 *SDIIIFRCP 312
            ++ +I   P
Sbjct: 370 QTNSLIITAP 379



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>AMY3_SCHPO (O14154) Probable alpha-amylase meu30 precursor (EC 3.2.1.1)|
           (1,4-alpha-D-glucan glucanohydrolase) (Mei4-dependent
           protein 5) (Meiotic expression up-regulated protein 30)
          Length = 513

 Score = 30.4 bits (67), Expect = 5.9
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +1

Query: 595 LRNSSWHNTCSSGGG*CHRDEWTTKAD---SWEAQPTGL 702
           +R + W   C S G  C  +EWT +AD    W+    GL
Sbjct: 231 VRRTFWPGFCESAGVYCQGEEWTGQADLFCEWQEYMDGL 269



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>NFYA2_ARATH (Q9M9X4) Nuclear transcription factor Y subunit A-2 (AtNF-YA-2)|
           (Transcriptional activator HAP2B)
          Length = 295

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -1

Query: 488 VGSANDNNSK----SSSCTEIAFSSNHEESLRLGGRPRNISFSGESPSTKL 348
           VGS  +   +    S+S T +AFS    +S RL  +P   +FS +SP  +L
Sbjct: 44  VGSVGETGQRVDKQSNSATHLAFSLGDVKSPRLVPKPHGATFSMQSPCLEL 94



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>EPL1_DEBHA (Q6BNX0) Enhancer of polycomb-like protein 1|
          Length = 1016

 Score = 30.0 bits (66), Expect = 7.7
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 527 YPSAKSPMESSDTVGSANDNNSKSSSCTEIAF 432
           YP  KSP   S+ +   N  N  +  C+E+ F
Sbjct: 181 YPKVKSPKVKSEKLDDTNKENDNARKCSEVEF 212


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 98,310,465
Number of Sequences: 219361
Number of extensions: 1907939
Number of successful extensions: 5255
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5026
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5249
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7649585595
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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