ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27o05
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK071001.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 6e-26
2dbj|AK065170.1| Oryza sativa (japonica cultivar-group) cDNA clon... 127 6e-26
3gb|AY104838.1| Zea mays PCO139385 mRNA sequence 82 3e-12
4dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 80 1e-11
5dbj|AP005321.2| Oryza sativa (japonica cultivar-group) genomic D... 80 1e-11
6dbj|AK059728.1| Oryza sativa (japonica cultivar-group) cDNA clon... 72 3e-09
7ref|XM_482498.1| Oryza sativa (japonica cultivar-group), mRNA 56 2e-04
8dbj|AK103459.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 2e-04
9dbj|AK060047.1| Oryza sativa (japonica cultivar-group) cDNA clon... 56 2e-04
10gb|AC144515.14| Medicago truncatula clone mth2-5j8, complete seq... 44 0.64
11gb|AC158571.3| Mus musculus chromosome 3, clone RP23-117E23, com... 44 0.64
12gb|AC022483.7| Homo sapiens BAC clone RP11-533F5 from 4, complet... 44 0.64
13gb|AC140419.8| Mus musculus BAC clone RP24-435P9 from chromosome... 44 0.64
14gb|AC124982.13| Mus musculus chromosome 3, clone RP24-173F6, com... 44 0.64
15gb|AC133200.3| Mus musculus BAC clone RP23-292C19 from 3, comple... 44 0.64
16emb|AL732486.9| Mouse DNA sequence from clone RP23-90B3 on chrom... 44 0.64
17gb|AC161571.11| Mus musculus chromosome 7, clone RP23-403M22, co... 42 2.5
18gb|AC106842.7| Mus musculus chromosome 7, clone RP24-165F13, com... 42 2.5
19gb|AC158953.8| Mus musculus chromosome 3, clone RP23-437C24, com... 42 2.5
20gb|AC146075.3| Pan troglodytes BAC clone RP43-15H6 from 7, compl... 42 2.5
21gb|AY853666.1| Macropus eugenii lymphotoxin beta (LTB), tumour n... 42 2.5
22gb|AC149215.3| Mus musculus BAC clone RP24-201G21 from chromosom... 42 2.5
23gb|AC004160.1| Homo sapiens BAC clone GS1-164B5 from 7, complete... 42 2.5
24gb|AC145467.1| Pan troglodytes BAC clone RP43-24J12 from 7, comp... 42 2.5
25emb|AL137067.7| Human DNA sequence from clone RP11-13B9 on chrom... 42 2.5
26gb|AC111062.13| Mus musculus chromosome 3, clone RP24-100J21, co... 42 2.5
27gb|AC147364.7| Medicago truncatula clone mth2-68g24, complete se... 42 2.5
28emb|BX537260.8| Zebrafish DNA sequence from clone DKEY-234J21 in... 42 2.5
29gb|AF119336.1|AF119336 Macropus eugenii lymphotoxin alpha (LTa) ... 42 2.5
30emb|CR381594.6| Zebrafish DNA sequence from clone DKEY-12H3 in l... 42 2.5
31emb|CT025939.7| Zebrafish DNA sequence from clone DKEY-99P10 in ... 42 2.5
32emb|CR925799.3| Wallaby DNA sequence from clone GRWB-66O5, compl... 42 2.5
33gb|U93025.1|DTANYHB2 Drosophila tanythrix hunchback protein gene... 42 2.5 
>dbj|AK071001.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023075J15, full
           insert sequence
          Length = 1443

 Score =  127 bits (64), Expect = 6e-26
 Identities = 140/163 (85%), Gaps = 3/163 (1%)
 Strand = Plus / Minus

                                                                       
Query: 490 gtgtcgctgctctccatcgggctcttggctgatggatacggcgcc-cgtagttgtcactc 548
           |||||||||||||| | ||||||||||||  |||| || |||||| ||  || |||||||
Sbjct: 919 gtgtcgctgctctctagcgggctcttggccaatgggtatggcgccacg--gtcgtcactc 862

                                                                       
Query: 549 tttctttccttttctccaagaatcgggcaagggacgccttccgggcttgaggaacagctc 608
           |||| || |  ||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct: 861 tttcctttcgcttctccaagaatcgggcaagggatgccttccgcgcttgagggacagctc 802

                                                      
Query: 609 ttggcataatacttgcagcagtggtggaggctagtgtcacagg 651
           | |||||||||  |||||||||||| | |||||||||| ||||
Sbjct: 801 tcggcataatagctgcagcagtggtagtggctagtgtctcagg 759



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 100/116 (86%), Gaps = 9/116 (7%)
 Strand = Plus / Minus

                                                                        
Query: 16   tttctttctgcaatacaatgggcgcaggggcaaaacaaaaaataacaatcaagagtctgc 75
            ||||||||||||||||||||| |||| || |||  |||||||||    ||||||||||||
Sbjct: 1339 tttctttctgcaatacaatgg-cgcaaggccaa--caaaaaatac---tcaagagtctgc 1286

                                                                    
Query: 76   aagcgacagctctcttgttagttaggtggggtgttgcaccagctagaccagcatta 131
            ||| | |||||| ||||||||||  | ||||| |||||||||||||||||||||||
Sbjct: 1285 aagtggcagctcccttgttagtt--ggggggt-ttgcaccagctagaccagcatta 1233



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 158  aaaacacatcataaacaagaataagagcatcatcaata 195
            ||||||||||||||||||||| |||| || ||||||||
Sbjct: 1215 aaaacacatcataaacaagaacaagaacaccatcaata 1178
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>dbj|AK065170.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002C19, full
            insert sequence
          Length = 1842

 Score =  127 bits (64), Expect = 6e-26
 Identities = 140/163 (85%), Gaps = 3/163 (1%)
 Strand = Plus / Minus

                                                                        
Query: 490  gtgtcgctgctctccatcgggctcttggctgatggatacggcgcc-cgtagttgtcactc 548
            |||||||||||||| | ||||||||||||  |||| || |||||| ||  || |||||||
Sbjct: 1285 gtgtcgctgctctctagcgggctcttggccaatgggtatggcgccacg--gtcgtcactc 1228

                                                                        
Query: 549  tttctttccttttctccaagaatcgggcaagggacgccttccgggcttgaggaacagctc 608
            |||| || |  ||||||||||||||||||||||| |||||||| |||||||| |||||||
Sbjct: 1227 tttcctttcgcttctccaagaatcgggcaagggatgccttccgcgcttgagggacagctc 1168

                                                       
Query: 609  ttggcataatacttgcagcagtggtggaggctagtgtcacagg 651
            | |||||||||  |||||||||||| | |||||||||| ||||
Sbjct: 1167 tcggcataatagctgcagcagtggtagtggctagtgtctcagg 1125



 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 101/116 (87%), Gaps = 9/116 (7%)
 Strand = Plus / Minus

                                                                        
Query: 16   tttctttctgcaatacaatgggcgcaggggcaaaacaaaaaataacaatcaagagtctgc 75
            ||||||||||||||||||||| |||| || |||  |||||||||    ||||||||||||
Sbjct: 1705 tttctttctgcaatacaatgg-cgcaaggccaa--caaaaaatac---tcaagagtctgc 1652

                                                                    
Query: 76   aagcgacagctctcttgttagttaggtggggtgttgcaccagctagaccagcatta 131
            ||| | |||||||||||||||||  | ||||| |||||||||||||||||||||||
Sbjct: 1651 aagtggcagctctcttgttagtt--ggggggt-ttgcaccagctagaccagcatta 1599



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 35/38 (92%)
 Strand = Plus / Minus

                                                  
Query: 158  aaaacacatcataaacaagaataagagcatcatcaata 195
            ||||||||||||||||||||| |||| || ||||||||
Sbjct: 1581 aaaacacatcataaacaagaacaagaacaccatcaata 1544
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>gb|AY104838.1| Zea mays PCO139385 mRNA sequence
          Length = 627

 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 44/45 (97%)
 Strand = Plus / Minus

                                                        
Query: 62  aatcaagagtctgcaagcgacagctctcttgttagttaggtgggg 106
           ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 477 aatcaagagtctgcaagtgacagctctcttgttagttaggtgggg 433



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 100/119 (84%), Gaps = 3/119 (2%)
 Strand = Plus / Minus

                                                                       
Query: 337 gatcagatgtgtagttttgtactcggggactccccgctaaagctgatgttcctgggccgg 396
           |||||||| |||||||||||||| ||||||||   | | |||||||||||||||||| | 
Sbjct: 251 gatcagatctgtagttttgtactgggggactcttggatgaagctgatgttcctgggctgc 192

                                                                      
Query: 397 ccgcctagacgcagcgactcctcatggttgcttgagaaggcgatctctgtgcatgatga 455
           ||   || ||  || |||||||||||||||||||||| ||| || ||||||||||||||
Sbjct: 191 cc---taaacatagggactcctcatggttgcttgagagggcaatgtctgtgcatgatga 136



 Score = 81.8 bits (41), Expect = 3e-12
 Identities = 75/85 (88%), Gaps = 1/85 (1%)
 Strand = Plus / Minus

                                                                       
Query: 489 cgtgtcgctgctctccatcgggctcttggctgatggatacggcgcccgtagttgtcactc 548
           |||||| ||||||||||||||||||||||||||||| || || | | | ||||||||| |
Sbjct: 108 cgtgtcactgctctccatcgggctcttggctgatgggtaaggtg-cagcagttgtcaccc 50

                                    
Query: 549 tttctttccttttctccaagaatcg 573
           |||| || |||||||||||||||||
Sbjct: 49  tttcctttcttttctccaagaatcg 25
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>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
                sequence
          Length = 22696651

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 101/116 (87%), Gaps = 9/116 (7%)
 Strand = Plus / Plus

                                                                            
Query: 16       tttctttctgcaatacaatgggcgcaggggcaaaacaaaaaataacaatcaagagtctgc 75
                ||||||||||||||||||||| |||| || |||  |||||||||    ||||||||||||
Sbjct: 14001571 tttctttctgcaatacaatgg-cgcaaggccaa--caaaaaatac---tcaagagtctgc 14001624

                                                                        
Query: 76       aagcgacagctctcttgttagttaggtggggtgttgcaccagctagaccagcatta 131
                ||| | |||||||||||||||||  | ||||| |||||||||||||||||||||||
Sbjct: 14001625 aagtggcagctctcttgttagtt--ggggggt-ttgcaccagctagaccagcatta 14001677



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                                
Query: 560      ttctccaagaatcgggcaagggacgccttccgggcttgaggaacagct 607
                ||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct: 14003516 ttctccaagaatcgggcaagggatgccttccgcgcttgagggacagct 14003563



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                      
Query: 158      aaaacacatcataaacaagaataagagcatcatcaata 195
                ||||||||||||||||||||| |||| || ||||||||
Sbjct: 14001695 aaaacacatcataaacaagaacaagaacaccatcaata 14001732



 Score = 44.1 bits (22), Expect = 0.64
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                              
Query: 606      ctcttggcataatacttgcagcagtggtggaggctagtgtcacagg 651
                |||| |||||||||  |||||||||||| | |||||||||| ||||
Sbjct: 14003671 ctctcggcataatagctgcagcagtggtagtggctagtgtctcagg 14003716



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 490      gtgtcgctgctctccatcgggctcttggc 518
                |||||||||||||| | ||||||||||||
Sbjct: 14001991 gtgtcgctgctctctagcgggctcttggc 14002019
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>dbj|AP005321.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
              clone:P0650H04
          Length = 134533

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 101/116 (87%), Gaps = 9/116 (7%)
 Strand = Plus / Plus

                                                                          
Query: 16     tttctttctgcaatacaatgggcgcaggggcaaaacaaaaaataacaatcaagagtctgc 75
              ||||||||||||||||||||| |||| || |||  |||||||||    ||||||||||||
Sbjct: 104045 tttctttctgcaatacaatgg-cgcaaggccaa--caaaaaatac---tcaagagtctgc 104098

                                                                      
Query: 76     aagcgacagctctcttgttagttaggtggggtgttgcaccagctagaccagcatta 131
              ||| | |||||||||||||||||  | ||||| |||||||||||||||||||||||
Sbjct: 104099 aagtggcagctctcttgttagtt--ggggggt-ttgcaccagctagaccagcatta 104151



 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 45/48 (93%)
 Strand = Plus / Plus

                                                              
Query: 560    ttctccaagaatcgggcaagggacgccttccgggcttgaggaacagct 607
              ||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct: 105990 ttctccaagaatcgggcaagggatgccttccgcgcttgagggacagct 106037



 Score = 52.0 bits (26), Expect = 0.003
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                    
Query: 158    aaaacacatcataaacaagaataagagcatcatcaata 195
              ||||||||||||||||||||| |||| || ||||||||
Sbjct: 104169 aaaacacatcataaacaagaacaagaacaccatcaata 104206



 Score = 44.1 bits (22), Expect = 0.64
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                            
Query: 606    ctcttggcataatacttgcagcagtggtggaggctagtgtcacagg 651
              |||| |||||||||  |||||||||||| | |||||||||| ||||
Sbjct: 106145 ctctcggcataatagctgcagcagtggtagtggctagtgtctcagg 106190



 Score = 42.1 bits (21), Expect = 2.5
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 490    gtgtcgctgctctccatcgggctcttggc 518
              |||||||||||||| | ||||||||||||
Sbjct: 104465 gtgtcgctgctctctagcgggctcttggc 104493
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>dbj|AK059728.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-D12, full
           insert sequence
          Length = 1098

 Score = 71.9 bits (36), Expect = 3e-09
 Identities = 45/48 (93%)
 Strand = Plus / Minus

                                                           
Query: 560 ttctccaagaatcgggcaagggacgccttccgggcttgaggaacagct 607
           ||||||||||||||||||||||| |||||||| |||||||| ||||||
Sbjct: 927 ttctccaagaatcgggcaagggatgccttccgcgcttgagggacagct 880



 Score = 44.1 bits (22), Expect = 0.64
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 606 ctcttggcataatacttgcagcagtggtggaggctagtgtcacagg 651
           |||| |||||||||  |||||||||||| | |||||||||| ||||
Sbjct: 772 ctctcggcataatagctgcagcagtggtagtggctagtgtctcagg 727
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>ref|XM_482498.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1868

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                    
Query: 560  ttctccaagaatcgggcaagggacgccttccgggcttgaggaacagctcttggcat 615
            ||||||||||||||||| || || || || || |||||||| ||||||||||||||
Sbjct: 1206 ttctccaagaatcgggcgagagatgcttttcgagcttgaggcacagctcttggcat 1151
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>dbj|AK103459.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033129L12, full
            insert sequence
          Length = 1868

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                    
Query: 560  ttctccaagaatcgggcaagggacgccttccgggcttgaggaacagctcttggcat 615
            ||||||||||||||||| || || || || || |||||||| ||||||||||||||
Sbjct: 1206 ttctccaagaatcgggcgagagatgcttttcgagcttgaggcacagctcttggcat 1151
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>dbj|AK060047.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-304-H06, full
           insert sequence
          Length = 1086

 Score = 56.0 bits (28), Expect = 2e-04
 Identities = 49/56 (87%)
 Strand = Plus / Minus

                                                                   
Query: 560 ttctccaagaatcgggcaagggacgccttccgggcttgaggaacagctcttggcat 615
           ||||||||||||||||| || || || || || |||||||| ||||||||||||||
Sbjct: 217 ttctccaagaatcgggcgagagatgcttttcgagcttgaggcacagctcttggcat 162
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>gb|AC144515.14| Medicago truncatula clone mth2-5j8, complete sequence
          Length = 119095

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 205   tatatcatgctgcctgacttttccca 230
             ||||||||||| ||||||||||||||
Sbjct: 45577 tatatcatgctacctgacttttccca 45552
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>gb|AC158571.3| Mus musculus chromosome 3, clone RP23-117E23, complete sequence
          Length = 197545

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 232  tatcccttctccctcctcctgc 253
            ||||||||||||||||||||||
Sbjct: 9924 tatcccttctccctcctcctgc 9903
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>gb|AC022483.7| Homo sapiens BAC clone RP11-533F5 from 4, complete sequence
          Length = 205640

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 234    tcccttctccctcctcctgcct 255
              ||||||||||||||||||||||
Sbjct: 141679 tcccttctccctcctcctgcct 141700
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>gb|AC140419.8| Mus musculus BAC clone RP24-435P9 from chromosome 3, complete sequence
          Length = 157093

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 538   agttgtcactctttctttcctt 559
             ||||||||||||||||||||||
Sbjct: 38809 agttgtcactctttctttcctt 38788
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>gb|AC124982.13| Mus musculus chromosome 3, clone RP24-173F6, complete sequence
          Length = 180185

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 232    tatcccttctccctcctcctgc 253
              ||||||||||||||||||||||
Sbjct: 123804 tatcccttctccctcctcctgc 123825
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>gb|AC133200.3| Mus musculus BAC clone RP23-292C19 from 3, complete sequence
          Length = 229751

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 538    agttgtcactctttctttcctt 559
              ||||||||||||||||||||||
Sbjct: 159619 agttgtcactctttctttcctt 159598
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>emb|AL732486.9| Mouse DNA sequence from clone RP23-90B3 on chromosome X, complete
              sequence
          Length = 252977

 Score = 44.1 bits (22), Expect = 0.64
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 232    tatcccttctccctcctcctgc 253
              ||||||||||||||||||||||
Sbjct: 134047 tatcccttctccctcctcctgc 134068
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>gb|AC161571.11| Mus musculus chromosome 7, clone RP23-403M22, complete sequence
          Length = 211052

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 46     caaaacaaaaaataacaatca 66
              |||||||||||||||||||||
Sbjct: 106198 caaaacaaaaaataacaatca 106218
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>gb|AC106842.7| Mus musculus chromosome 7, clone RP24-165F13, complete sequence
          Length = 140252

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 235   cccttctccctcctcctgcct 255
             |||||||||||||||||||||
Sbjct: 52904 cccttctccctcctcctgcct 52884
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>gb|AC158953.8| Mus musculus chromosome 3, clone RP23-437C24, complete sequence
          Length = 204136

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 235    cccttctccctcctcctgcct 255
              |||||||||||||||||||||
Sbjct: 139813 cccttctccctcctcctgcct 139833
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>gb|AC146075.3| Pan troglodytes BAC clone RP43-15H6 from 7, complete sequence
          Length = 174752

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 547   tctttctttccttttctccaagaat 571
             |||||||||||||||| ||||||||
Sbjct: 16637 tctttctttccttttccccaagaat 16613
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>gb|AY853666.1| Macropus eugenii lymphotoxin beta (LTB), tumour necrosis factor alpha
             (TFN), and lymphotoxin alpha (LTA) genes, complete cds
          Length = 13186

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 544   cactctttctttccttttctc 564
             |||||||||||||||||||||
Sbjct: 10585 cactctttctttccttttctc 10605
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>gb|AC149215.3| Mus musculus BAC clone RP24-201G21 from chromosome 7, complete sequence
          Length = 174164

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 231   atatcccttctccctcctcctgcct 255
             ||||||| |||||||||||||||||
Sbjct: 53597 atatcccctctccctcctcctgcct 53621
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>gb|AC004160.1| Homo sapiens BAC clone GS1-164B5 from 7, complete sequence
          Length = 143751

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 547  tctttctttccttttctccaagaat 571
            |||||||||||||||| ||||||||
Sbjct: 9573 tctttctttccttttccccaagaat 9597
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>gb|AC145467.1| Pan troglodytes BAC clone RP43-24J12 from 7, complete sequence
          Length = 50531

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 547 tctttctttccttttctccaagaat 571
           |||||||||||||||| ||||||||
Sbjct: 402 tctttctttccttttccccaagaat 378
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>emb|AL137067.7| Human DNA sequence from clone RP11-13B9 on chromosome 9q22.32-31.3
             Contains a gene for a novel protein similar to a
             glycosyltransferase, the gene for protein translocation
             complex beta (SEC61B), a novel gene for a protein similar
             to cytokeratin 8 (KRT8)and a CpG island, complete sequence
          Length = 197169

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 242   ccctcctcctgcctggatgca 262
             |||||||||||||||||||||
Sbjct: 62464 ccctcctcctgcctggatgca 62484
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>gb|AC111062.13| Mus musculus chromosome 3, clone RP24-100J21, complete sequence
          Length = 214132

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 235   cccttctccctcctcctgcct 255
             |||||||||||||||||||||
Sbjct: 10601 cccttctccctcctcctgcct 10581
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>gb|AC147364.7| Medicago truncatula clone mth2-68g24, complete sequence
          Length = 109540

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 47    aaaacaaaaaataacaatcaa 67
             |||||||||||||||||||||
Sbjct: 10042 aaaacaaaaaataacaatcaa 10062
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>emb|BX537260.8| Zebrafish DNA sequence from clone DKEY-234J21 in linkage group 1,
              complete sequence
          Length = 150038

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 231    atatcccttctccctcctcct 251
              |||||||||||||||||||||
Sbjct: 126797 atatcccttctccctcctcct 126817
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>gb|AF119336.1|AF119336 Macropus eugenii lymphotoxin alpha (LTa) mRNA, complete cds
          Length = 1336

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 544 cactctttctttccttttctc 564
           |||||||||||||||||||||
Sbjct: 983 cactctttctttccttttctc 963
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>emb|CR381594.6| Zebrafish DNA sequence from clone DKEY-12H3 in linkage group 19,
             complete sequence
          Length = 182645

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 231   atatcccttctccctcctcct 251
             |||||||||||||||||||||
Sbjct: 26895 atatcccttctccctcctcct 26875
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>emb|CT025939.7| Zebrafish DNA sequence from clone DKEY-99P10 in linkage group 5,
             complete sequence
          Length = 56634

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 166   tcataaacaagaataagagca 186
             |||||||||||||||||||||
Sbjct: 43171 tcataaacaagaataagagca 43191
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>emb|CR925799.3| Wallaby DNA sequence from clone GRWB-66O5, complete sequence
          Length = 165490

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 544   cactctttctttccttttctc 564
             |||||||||||||||||||||
Sbjct: 74784 cactctttctttccttttctc 74764
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>gb|U93025.1|DTANYHB2 Drosophila tanythrix hunchback protein gene, partial cds
          Length = 285

 Score = 42.1 bits (21), Expect = 2.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 461 tgctgttgttgtcgttggcgc 481
           |||||||||||||||||||||
Sbjct: 126 tgctgttgttgtcgttggcgc 106


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9,174,849
Number of Sequences: 3902068
Number of extensions: 9174849
Number of successful extensions: 236185
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 236003
Number of HSP's gapped (non-prelim): 174
length of query: 734
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 711
effective length of database: 17,143,297,704
effective search space: 12188884667544
effective search space used: 12188884667544
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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