ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27o02 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB042240.3| Triticum aestivum chloroplast DNA, complete genome Length = 134545 Score = 642 bits (324), Expect = 0.0 Identities = 403/435 (92%), Gaps = 2/435 (0%) Strand = Plus / Plus Query: 1 cgaaantcaangcttcgntcnaaacggctacacccaatacgtcganactgcattgcccaa 60 ||||| |||| |||||| | |||||| ||||||||||||||||| ||| |||||||||| Sbjct: 49946 cgaaaatcaaagcttcgataaaaacggatacacccaatacgtcgaaact-cattgcccaa 50004 Query: 61 gggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaaacatatnnta 120 ||||||||| |||||||||||||||||||||||||| |||||||||||||||||| || Sbjct: 50005 gggtatagaaagacggtttccacatcaaaaacaacaa-aaacgagcgcaaacatataata 50063 Query: 121 gcgnatncggaattggacccaagcccctcccatgggttctatncccgattcatanctaga 180 ||| || |||||||| |||||||||||||||||||||||||| ||||||||||| ||||| Sbjct: 50064 gcgtattcggaattgtacccaagcccctcccatgggttctatacccgattcataactaga 50123 Query: 181 nagcttctctggnccttcactaaccggggctcaaagccctgaaatcgaaaangccaaaat 240 ||||||||||| |||||||||||||||||| |||| |||||||||||||| |||||||| Sbjct: 50124 aagcttctctggtccttcactaaccggggctaaaagtcctgaaatcgaaaatgccaaaat 50183 Query: 241 aggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcntnaagcagaaa 300 ||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||| Sbjct: 50184 aggaataaggcttgctattattagaaatgtccaaaaaatatcatattcgtgaagcagaaa 50243 Query: 301 catantgtactcccattaatgtggaataggcggaacttaaattanncaattcaattcagc 360 |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 50244 cataatgtactcccattaatgtggaataggcggaacttaaattagtcaattcaattcagc 50303 Query: 361 attgtcaatttatccagaacttctctcttttcctcggtgaaacaagaatcttttnngntc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct: 50304 attgtcaatttatccagaacttctctcttttcctcggtgaaacaagaatcttttttgttc 50363 Query: 421 aaacaaaagcgctta 435 ||||||||||||||| Sbjct: 50364 aaacaaaagcgctta 50378
>gb|J04954.1|WHTCPPSBG Triticum aestivum chloroplast NADPH-plastoquinone oxireductase (psbG) and thylakoid membrane protein (ndhC) genes, complete cds Length = 1492 Score = 642 bits (324), Expect = 0.0 Identities = 403/435 (92%), Gaps = 2/435 (0%) Strand = Plus / Minus Query: 1 cgaaantcaangcttcgntcnaaacggctacacccaatacgtcganactgcattgcccaa 60 ||||| |||| |||||| | |||||| ||||||||||||||||| ||| |||||||||| Sbjct: 545 cgaaaatcaaagcttcgataaaaacggatacacccaatacgtcgaaact-cattgcccaa 487 Query: 61 gggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaaacatatnnta 120 ||||||||| |||||||||||||||||||||||||| |||||||||||||||||| || Sbjct: 486 gggtatagaaagacggtttccacatcaaaaacaacaa-aaacgagcgcaaacatataata 428 Query: 121 gcgnatncggaattggacccaagcccctcccatgggttctatncccgattcatanctaga 180 ||| || |||||||| |||||||||||||||||||||||||| ||||||||||| ||||| Sbjct: 427 gcgtattcggaattgtacccaagcccctcccatgggttctatacccgattcataactaga 368 Query: 181 nagcttctctggnccttcactaaccggggctcaaagccctgaaatcgaaaangccaaaat 240 ||||||||||| |||||||||||||||||| |||| |||||||||||||| |||||||| Sbjct: 367 aagcttctctggtccttcactaaccggggctaaaagtcctgaaatcgaaaatgccaaaat 308 Query: 241 aggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcntnaagcagaaa 300 ||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||| Sbjct: 307 aggaataaggcttgctattattagaaatgtccaaaaaatatcatattcgtgaagcagaaa 248 Query: 301 catantgtactcccattaatgtggaataggcggaacttaaattanncaattcaattcagc 360 |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 247 cataatgtactcccattaatgtggaataggcggaacttaaattagtcaattcaattcagc 188 Query: 361 attgtcaatttatccagaacttctctcttttcctcggtgaaacaagaatcttttnngntc 420 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct: 187 attgtcaatttatccagaacttctctcttttcctcggtgaaacaagaatcttttttgttc 128 Query: 421 aaacaaaagcgctta 435 ||||||||||||||| Sbjct: 127 aaacaaaagcgctta 113
>emb|X86563.2|ZMA86563 Zea mays complete chloroplast genome Length = 140384 Score = 472 bits (238), Expect = e-130 Identities = 365/409 (89%), Gaps = 4/409 (0%) Strand = Plus / Plus Query: 22 aaacggctacacccaatacgtcganactgcattgcccaagggtataganngacggtttcc 81 |||||| ||||||||||||||||| ||| ||||||||||||||| ||| ||| |||||| Sbjct: 51938 aaacggatacacccaatacgtcgaaact-cattgcccaagggtagagaaagactgtttcc 51996 Query: 82 acatcaaaaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggaccca 141 |||||||||||||||| |||| ||||||||||| | ||||| || |||||||| | ||| Sbjct: 51997 acatcaaaaacaacaa-aaactagcgcaaacatgtaatagcgtattcggaattgtaacca 52055 Query: 142 agcccctcccatgggttctatncccgattcatanctaganagcttctctggnccttcact 201 |||||| |||||||||||||| ||||||||||| ||||| ||||||||||| |||||||| Sbjct: 52056 agccccccccatgggttctatacccgattcataactagaaagcttctctggtccttcact 52115 Query: 202 aaccggggctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattat 261 |||||||||| |||| ||||||||| |||| |||||||||||||||||||||||||||| Sbjct: 52116 aaccggggctaaaagtcctgaaatccaaaataccaaaataggaataaggcttgctattat 52175 Query: 262 nagaaatgtccaaaaaatatcatattcntnaagcagaaacat-antgtactcccattaat 320 |||||||||||||||||||||||||| | |||||||||||| | ||||||||||||||| Sbjct: 52176 tagaaatgtccaaaaaatatcatattcgtgaagcagaaacataaatgtactcccattaat 52235 Query: 321 gtggaataggcggaacttaaattanncaattcaattcagcattgtcaatttatccagaac 380 |||||||||||||||| | ||||| |||||||| | ||||||||||||||||||||| Sbjct: 52236 gtggaataggcggaac-tgaattagtcaattcaagttgacattgtcaatttatccagaac 52294 Query: 381 ttctctcttttcctcggtgaaacaagaatcttttnngntcaaacaaaag 429 ||||||||||||||||||||||||||||||| || | |||||| |||| Sbjct: 52295 ttctctcttttcctcggtgaaacaagaatctgttttgctcaaaccaaag 52343
>gb|AE009947.2| Saccharum hybrid cultivar SP-80-3280 chloroplast, complete genome Length = 141182 Score = 472 bits (238), Expect = e-130 Identities = 365/409 (89%), Gaps = 4/409 (0%) Strand = Plus / Plus Query: 22 aaacggctacacccaatacgtcganactgcattgcccaagggtataganngacggtttcc 81 |||||| ||||||||||||||||| ||| ||||||||||||||| ||| ||| |||||| Sbjct: 114092 aaacggatacacccaatacgtcgaaact-cattgcccaagggtagagaaagactgtttcc 114150 Query: 82 acatcaaaaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggaccca 141 |||||||||||||||| |||| ||||||||||| | ||||| || |||||||| | ||| Sbjct: 114151 acatcaaaaacaacaa-aaactagcgcaaacatgtaatagcgtattcggaattgtaacca 114209 Query: 142 agcccctcccatgggttctatncccgattcatanctaganagcttctctggnccttcact 201 |||||| |||||||||||||| ||||||||||| ||||| ||||||||||| |||||||| Sbjct: 114210 agccccccccatgggttctatacccgattcataactagaaagcttctctggtccttcact 114269 Query: 202 aaccggggctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattat 261 |||||||||| |||| ||||||||| |||| |||||||||||||||||||||||||||| Sbjct: 114270 aaccggggctaaaagtcctgaaatccaaaataccaaaataggaataaggcttgctattat 114329 Query: 262 nagaaatgtccaaaaaatatcatattcntnaagcagaaacat-antgtactcccattaat 320 |||||||||||||||||||||||||| | |||||||||||| | ||||||||||||||| Sbjct: 114330 tagaaatgtccaaaaaatatcatattcgtgaagcagaaacataaatgtactcccattaat 114389 Query: 321 gtggaataggcggaacttaaattanncaattcaattcagcattgtcaatttatccagaac 380 |||||||||||||||| | ||||| |||||||| | ||||||||||||||||||||| Sbjct: 114390 gtggaataggcggaac-tgaattagtcaattcaagttgacattgtcaatttatccagaac 114448 Query: 381 ttctctcttttcctcggtgaaacaagaatcttttnngntcaaacaaaag 429 ||||||||||||||||||||||||||||||| || | |||||| |||| Sbjct: 114449 ttctctcttttcctcggtgaaacaagaatctgttttgctcaaaccaaag 114497
>gb|AY928077.1| Zea mays cultivar B73 chloroplast, complete genome Length = 140454 Score = 472 bits (238), Expect = e-130 Identities = 365/409 (89%), Gaps = 4/409 (0%) Strand = Plus / Plus Query: 22 aaacggctacacccaatacgtcganactgcattgcccaagggtataganngacggtttcc 81 |||||| ||||||||||||||||| ||| ||||||||||||||| ||| ||| |||||| Sbjct: 51927 aaacggatacacccaatacgtcgaaact-cattgcccaagggtagagaaagactgtttcc 51985 Query: 82 acatcaaaaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggaccca 141 |||||||||||||||| |||| ||||||||||| | ||||| || |||||||| | ||| Sbjct: 51986 acatcaaaaacaacaa-aaactagcgcaaacatgtaatagcgtattcggaattgtaacca 52044 Query: 142 agcccctcccatgggttctatncccgattcatanctaganagcttctctggnccttcact 201 |||||| |||||||||||||| ||||||||||| ||||| ||||||||||| |||||||| Sbjct: 52045 agccccccccatgggttctatacccgattcataactagaaagcttctctggtccttcact 52104 Query: 202 aaccggggctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattat 261 |||||||||| |||| ||||||||| |||| |||||||||||||||||||||||||||| Sbjct: 52105 aaccggggctaaaagtcctgaaatccaaaataccaaaataggaataaggcttgctattat 52164 Query: 262 nagaaatgtccaaaaaatatcatattcntnaagcagaaacat-antgtactcccattaat 320 |||||||||||||||||||||||||| | |||||||||||| | ||||||||||||||| Sbjct: 52165 tagaaatgtccaaaaaatatcatattcgtgaagcagaaacataaatgtactcccattaat 52224 Query: 321 gtggaataggcggaacttaaattanncaattcaattcagcattgtcaatttatccagaac 380 |||||||||||||||| | ||||| |||||||| | ||||||||||||||||||||| Sbjct: 52225 gtggaataggcggaac-tgaattagtcaattcaagttgacattgtcaatttatccagaac 52283 Query: 381 ttctctcttttcctcggtgaaacaagaatcttttnngntcaaacaaaag 429 ||||||||||||||||||||||||||||||| || | |||||| |||| Sbjct: 52284 ttctctcttttcctcggtgaaacaagaatctgttttgctcaaaccaaag 52332
>dbj|AP006714.1| Saccharum officinarum chloroplast DNA, complete genome Length = 141182 Score = 472 bits (238), Expect = e-130 Identities = 365/409 (89%), Gaps = 4/409 (0%) Strand = Plus / Plus Query: 22 aaacggctacacccaatacgtcganactgcattgcccaagggtataganngacggtttcc 81 |||||| ||||||||||||||||| ||| ||||||||||||||| ||| ||| |||||| Sbjct: 52465 aaacggatacacccaatacgtcgaaact-cattgcccaagggtagagaaagactgtttcc 52523 Query: 82 acatcaaaaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggaccca 141 |||||||||||||||| |||| ||||||||||| | ||||| || |||||||| | ||| Sbjct: 52524 acatcaaaaacaacaa-aaactagcgcaaacatgtaatagcgtattcggaattgtaacca 52582 Query: 142 agcccctcccatgggttctatncccgattcatanctaganagcttctctggnccttcact 201 |||||| |||||||||||||| ||||||||||| ||||| ||||||||||| |||||||| Sbjct: 52583 agccccccccatgggttctatacccgattcataactagaaagcttctctggtccttcact 52642 Query: 202 aaccggggctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattat 261 |||||||||| |||| ||||||||| |||| |||||||||||||||||||||||||||| Sbjct: 52643 aaccggggctaaaagtcctgaaatccaaaataccaaaataggaataaggcttgctattat 52702 Query: 262 nagaaatgtccaaaaaatatcatattcntnaagcagaaacat-antgtactcccattaat 320 |||||||||||||||||||||||||| | |||||||||||| | ||||||||||||||| Sbjct: 52703 tagaaatgtccaaaaaatatcatattcgtgaagcagaaacataaatgtactcccattaat 52762 Query: 321 gtggaataggcggaacttaaattanncaattcaattcagcattgtcaatttatccagaac 380 |||||||||||||||| | ||||| |||||||| | ||||||||||||||||||||| Sbjct: 52763 gtggaataggcggaac-tgaattagtcaattcaagttgacattgtcaatttatccagaac 52821 Query: 381 ttctctcttttcctcggtgaaacaagaatcttttnngntcaaacaaaag 429 ||||||||||||||||||||||||||||||| || | |||||| |||| Sbjct: 52822 ttctctcttttcctcggtgaaacaagaatctgttttgctcaaaccaaag 52870
>gb|AY243565.1| Hordeum vulgare chloroplast Ndh complex operon, complete sequence Length = 1778 Score = 442 bits (223), Expect = e-121 Identities = 289/315 (91%), Gaps = 2/315 (0%) Strand = Plus / Minus Query: 1 cgaaantcaangcttcgntcnaaacggctacacccaatacgtcganactgcattgcccaa 60 ||||| |||| |||||| | |||||| ||||||||||||||||| ||| |||||||||| Sbjct: 317 cgaaaatcaaagcttcgataaaaacggatacacccaatacgtcgaaact-cattgcccaa 259 Query: 61 gggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaaacatatnnta 120 ||||||||| |||||||||||||||||||||||||| |||||||||||||||||| || Sbjct: 258 gggtatagaaagacggtttccacatcaaaaacaacaa-aaacgagcgcaaacatataata 200 Query: 121 gcgnatncggaattggacccaagcccctcccatgggttctatncccgattcatanctaga 180 ||| || |||||||| |||||||||||||||||||||||||| ||||||||||| ||||| Sbjct: 199 gcgtattcggaattgtacccaagcccctcccatgggttctatacccgattcataactaga 140 Query: 181 nagcttctctggnccttcactaaccggggctcaaagccctgaaatcgaaaangccaaaat 240 ||||||||||| |||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct: 139 aagcttctctggtccttcactaaccggggctaaaagccctgaaatcgaaaatgccaaaat 80 Query: 241 aggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcntnaagcagaaa 300 ||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||| Sbjct: 79 aggaataaggcttgctattattagaaatgtccaaaaaatatcatattcgtgaagcagaaa 20 Query: 301 catantgtactccca 315 |||| |||||||||| Sbjct: 19 cataatgtactccca 5
>gb|AY522330.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare chloroplast, complete genome Length = 134551 Score = 430 bits (217), Expect = e-117 Identities = 358/407 (87%), Gaps = 4/407 (0%) Strand = Plus / Plus Query: 1 cgaaantcaangcttcgntcnaaacggctacacccaatacgtcganactgcattgcccaa 60 ||||| | || |||||| | |||||| || |||||||||||||| ||| |||||||||| Sbjct: 49355 cgaaaatgaaagcttcgataaaaacggatatacccaatacgtcgaaact-cattgcccaa 49413 Query: 61 gggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaaacatatnnta 120 ||||| ||| ||| |||||||||||||||||||||| |||| ||||||||||| | || Sbjct: 49414 gggtagagaaagaccgtttccacatcaaaaacaacaa-aaactagcgcaaacatgtaata 49472 Query: 121 gcgnatncggaattggacccaagcccctcccatgggttctatncccgattcatanctaga 180 ||| || |||||||| | ||||||||| |||||||||||||| ||||||||||| ||||| Sbjct: 49473 gcgtattcggaattgtaaccaagccccccccatgggttctatacccgattcataactaga 49532 Query: 181 nagcttctctggnccttcactaaccggggctcaaagccctgaaatcgaaaangccaaaat 240 ||||||||||| ||||||| |||||| ||| |||| |||||||| |||| || ||||| Sbjct: 49533 aagcttctctggtccttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaat 49592 Query: 241 aggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcntnaagcagaaa 300 ||||||||||||||||||||| ||||||| |||||||||||||||||| | ||||||||| Sbjct: 49593 aggaataaggcttgctattattagaaatgcccaaaaaatatcatattcgtgaagcagaaa 49652 Query: 301 cat-antgtactcccattaatgtggaataggcggaacttaaattanncaattcaattcag 359 ||| | ||||||||||||||||||||||||||||||| | ||||| |||||||| |||| Sbjct: 49653 cataaatgtactcccattaatgtggaataggcggaac-tgaattagtcaattcaagtcag 49711 Query: 360 cattgtcaatttatccagaacttctctcttttcctcggtgaaacaag 406 |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 49712 cattgtcaatttatacagaatttctctcttttcctcggtgaaacaag 49758
>gb|AY522331.1| Oryza sativa (japonica cultivar-group) isolate PA64S chloroplast, complete genome Length = 134551 Score = 430 bits (217), Expect = e-117 Identities = 358/407 (87%), Gaps = 4/407 (0%) Strand = Plus / Plus Query: 1 cgaaantcaangcttcgntcnaaacggctacacccaatacgtcganactgcattgcccaa 60 ||||| | || |||||| | |||||| || |||||||||||||| ||| |||||||||| Sbjct: 49355 cgaaaatgaaagcttcgataaaaacggatatacccaatacgtcgaaact-cattgcccaa 49413 Query: 61 gggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaaacatatnnta 120 ||||| ||| ||| |||||||||||||||||||||| |||| ||||||||||| | || Sbjct: 49414 gggtagagaaagaccgtttccacatcaaaaacaacaa-aaactagcgcaaacatgtaata 49472 Query: 121 gcgnatncggaattggacccaagcccctcccatgggttctatncccgattcatanctaga 180 ||| || |||||||| | ||||||||| |||||||||||||| ||||||||||| ||||| Sbjct: 49473 gcgtattcggaattgtaaccaagccccccccatgggttctatacccgattcataactaga 49532 Query: 181 nagcttctctggnccttcactaaccggggctcaaagccctgaaatcgaaaangccaaaat 240 ||||||||||| ||||||| |||||| ||| |||| |||||||| |||| || ||||| Sbjct: 49533 aagcttctctggtccttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaat 49592 Query: 241 aggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcntnaagcagaaa 300 ||||||||||||||||||||| ||||||| |||||||||||||||||| | ||||||||| Sbjct: 49593 aggaataaggcttgctattattagaaatgcccaaaaaatatcatattcgtgaagcagaaa 49652 Query: 301 cat-antgtactcccattaatgtggaataggcggaacttaaattanncaattcaattcag 359 ||| | ||||||||||||||||||||||||||||||| | ||||| |||||||| |||| Sbjct: 49653 cataaatgtactcccattaatgtggaataggcggaac-tgaattagtcaattcaagtcag 49711 Query: 360 cattgtcaatttatccagaacttctctcttttcctcggtgaaacaag 406 |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 49712 cattgtcaatttatacagaatttctctcttttcctcggtgaaacaag 49758
>gb|AY522329.1| Oryza sativa (indica cultivar-group) isolate 93-11 chloroplast, complete genome Length = 134496 Score = 430 bits (217), Expect = e-117 Identities = 358/407 (87%), Gaps = 4/407 (0%) Strand = Plus / Plus Query: 1 cgaaantcaangcttcgntcnaaacggctacacccaatacgtcganactgcattgcccaa 60 ||||| | || |||||| | |||||| || |||||||||||||| ||| |||||||||| Sbjct: 49303 cgaaaatgaaagcttcgataaaaacggatatacccaatacgtcgaaact-cattgcccaa 49361 Query: 61 gggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaaacatatnnta 120 ||||| ||| ||| |||||||||||||||||||||| |||| ||||||||||| | || Sbjct: 49362 gggtagagaaagaccgtttccacatcaaaaacaacaa-aaactagcgcaaacatgtaata 49420 Query: 121 gcgnatncggaattggacccaagcccctcccatgggttctatncccgattcatanctaga 180 ||| || |||||||| | ||||||||| |||||||||||||| ||||||||||| ||||| Sbjct: 49421 gcgtattcggaattgtaaccaagccccccccatgggttctatacccgattcataactaga 49480 Query: 181 nagcttctctggnccttcactaaccggggctcaaagccctgaaatcgaaaangccaaaat 240 ||||||||||| ||||||| |||||| ||| |||| |||||||| |||| || ||||| Sbjct: 49481 aagcttctctggtccttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaat 49540 Query: 241 aggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcntnaagcagaaa 300 ||||||||||||||||||||| ||||||| |||||||||||||||||| | ||||||||| Sbjct: 49541 aggaataaggcttgctattattagaaatgcccaaaaaatatcatattcgtgaagcagaaa 49600 Query: 301 cat-antgtactcccattaatgtggaataggcggaacttaaattanncaattcaattcag 359 ||| | ||||||||||||||||||||||||||||||| | ||||| |||||||| |||| Sbjct: 49601 cataaatgtactcccattaatgtggaataggcggaac-tgaattagtcaattcaagtcag 49659 Query: 360 cattgtcaatttatccagaacttctctcttttcctcggtgaaacaag 406 |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 49660 cattgtcaatttatacagaatttctctcttttcctcggtgaaacaag 49706
>emb|X15901.1|CHOSXX Oryza sativa (japonica cultivar-group) chloroplast genome Length = 134525 Score = 430 bits (217), Expect = e-117 Identities = 358/407 (87%), Gaps = 4/407 (0%) Strand = Plus / Plus Query: 1 cgaaantcaangcttcgntcnaaacggctacacccaatacgtcganactgcattgcccaa 60 ||||| | || |||||| | |||||| || |||||||||||||| ||| |||||||||| Sbjct: 49362 cgaaaatgaaagcttcgataaaaacggatatacccaatacgtcgaaact-cattgcccaa 49420 Query: 61 gggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaaacatatnnta 120 ||||| ||| ||| |||||||||||||||||||||| |||| ||||||||||| | || Sbjct: 49421 gggtagagaaagaccgtttccacatcaaaaacaacaa-aaactagcgcaaacatgtaata 49479 Query: 121 gcgnatncggaattggacccaagcccctcccatgggttctatncccgattcatanctaga 180 ||| || |||||||| | ||||||||| |||||||||||||| ||||||||||| ||||| Sbjct: 49480 gcgtattcggaattgtaaccaagccccccccatgggttctatacccgattcataactaga 49539 Query: 181 nagcttctctggnccttcactaaccggggctcaaagccctgaaatcgaaaangccaaaat 240 ||||||||||| ||||||| |||||| ||| |||| |||||||| |||| || ||||| Sbjct: 49540 aagcttctctggtccttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaat 49599 Query: 241 aggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcntnaagcagaaa 300 ||||||||||||||||||||| ||||||| |||||||||||||||||| | ||||||||| Sbjct: 49600 aggaataaggcttgctattattagaaatgcccaaaaaatatcatattcgtgaagcagaaa 49659 Query: 301 cat-antgtactcccattaatgtggaataggcggaacttaaattanncaattcaattcag 359 ||| | ||||||||||||||||||||||||||||||| | ||||| |||||||| |||| Sbjct: 49660 cataaatgtactcccattaatgtggaataggcggaac-tgaattagtcaattcaagtcag 49718 Query: 360 cattgtcaatttatccagaacttctctcttttcctcggtgaaacaag 406 |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 49719 cattgtcaatttatacagaatttctctcttttcctcggtgaaacaag 49765
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 430 bits (217), Expect = e-117 Identities = 358/407 (87%), Gaps = 4/407 (0%) Strand = Plus / Plus Query: 1 cgaaantcaangcttcgntcnaaacggctacacccaatacgtcganactgcattgcccaa 60 ||||| | || |||||| | |||||| || |||||||||||||| ||| |||||||||| Sbjct: 11285517 cgaaaatgaaagcttcgataaaaacggatatacccaatacgtcgaaact-cattgcccaa 11285575 Query: 61 gggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaaacatatnnta 120 ||||| ||| ||| |||||||||||||||||||||| |||| ||||||||||| | || Sbjct: 11285576 gggtagagaaagaccgtttccacatcaaaaacaacaa-aaactagcgcaaacatgtaata 11285634 Query: 121 gcgnatncggaattggacccaagcccctcccatgggttctatncccgattcatanctaga 180 ||| || |||||||| | ||||||||| |||||||||||||| ||||||||||| ||||| Sbjct: 11285635 gcgtattcggaattgtaaccaagccccccccatgggttctatacccgattcataactaga 11285694 Query: 181 nagcttctctggnccttcactaaccggggctcaaagccctgaaatcgaaaangccaaaat 240 ||||||||||| ||||||| |||||| ||| |||| |||||||| |||| || ||||| Sbjct: 11285695 aagcttctctggtccttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaat 11285754 Query: 241 aggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcntnaagcagaaa 300 ||||||||||||||||||||| ||||||| |||||||||||||||||| | ||||||||| Sbjct: 11285755 aggaataaggcttgctattattagaaatgcccaaaaaatatcatattcgtgaagcagaaa 11285814 Query: 301 cat-antgtactcccattaatgtggaataggcggaacttaaattanncaattcaattcag 359 ||| | ||||||||||||||||||||||||||||||| | ||||| |||||||| |||| Sbjct: 11285815 cataaatgtactcccattaatgtggaataggcggaac-tgaattagtcaattcaagtcag 11285873 Query: 360 cattgtcaatttatccagaacttctctcttttcctcggtgaaacaag 406 |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 11285874 cattgtcaatttatacagaatttctctcttttcctcggtgaaacaag 11285920 Score = 392 bits (198), Expect = e-106 Identities = 356/408 (87%), Gaps = 6/408 (1%) Strand = Plus / Plus Query: 1 cgaaantcaangcttcgntcnaaacggctacacccaatacgtcganactgcattgcccaa 60 ||||| | || |||||| | |||||| || |||||||||||||| ||| |||||||||| Sbjct: 5608393 cgaaaatgaaagcttcgataaaaacggatatacccaatacgtcgaaact-cattgcccaa 5608451 Query: 61 gggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaaacatatnnta 120 ||||| ||| ||| |||||||||||||||||||||| |||| ||||||||||| | || Sbjct: 5608452 gggtagagaaagaccgtttccacatcaaaaacaacaa-aaactagcgcaaacatgtaata 5608510 Query: 121 gcgnatncggaattggacccaagcccctcccatgggttctatncccgattcatanctaga 180 ||| || |||||||| | ||||||||| |||||||||||||| ||||||||||| ||||| Sbjct: 5608511 gcgtattcggaattgtaaccaagcccc-cccatgggttctatacccgattcataactaga 5608569 Query: 181 nagcttctctggnccttcactaaccggggctcaaagccctgaaatcgaaaangccaaaa- 239 ||||||||||| ||||||| |||||| ||| |||| |||||||| |||| || |||| Sbjct: 5608570 aagcttctctggtccttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaaa 5608629 Query: 240 taggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcntnaagcagaa 299 |||||||||||||||||||||| ||||||| |||||||||||||||||| | |||||||| Sbjct: 5608630 taggaataaggcttgctattattagaaatgcccaaaaaatatcatattcgtgaagcagaa 5608689 Query: 300 acat-antgtactcccattaatgtggaataggcggaacttaaattanncaattcaattca 358 |||| | ||||||||||||||||||||||||||||||| | ||||| |||||||| ||| Sbjct: 5608690 acataaatgtactcccattaatgtggaataggcggaac-tgaattagtcaattcaagtca 5608748 Query: 359 gcattgtcaatttatccagaacttctctcttttcctcggtgaaacaag 406 ||||||||||||| | ||||| |||||| ||||||||||||||||||| Sbjct: 5608749 gcattgtcaatttttacagaatttctcttttttcctcggtgaaacaag 5608796
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 430 bits (217), Expect = e-117 Identities = 358/407 (87%), Gaps = 4/407 (0%) Strand = Plus / Minus Query: 1 cgaaantcaangcttcgntcnaaacggctacacccaatacgtcganactgcattgcccaa 60 ||||| | || |||||| | |||||| || |||||||||||||| ||| |||||||||| Sbjct: 19945247 cgaaaatgaaagcttcgataaaaacggatatacccaatacgtcgaaact-cattgcccaa 19945189 Query: 61 gggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaaacatatnnta 120 ||||| ||| ||| |||||||||||||||||||||| |||| ||||||||||| | || Sbjct: 19945188 gggtagagaaagaccgtttccacatcaaaaacaacaa-aaactagcgcaaacatgtaata 19945130 Query: 121 gcgnatncggaattggacccaagcccctcccatgggttctatncccgattcatanctaga 180 ||| || |||||||| | ||||||||| |||||||||||||| ||||||||||| ||||| Sbjct: 19945129 gcgtattcggaattgtaaccaagccccccccatgggttctatacccgattcataactaga 19945070 Query: 181 nagcttctctggnccttcactaaccggggctcaaagccctgaaatcgaaaangccaaaat 240 ||||||||||| ||||||| |||||| ||| |||| |||||||| |||| || ||||| Sbjct: 19945069 aagcttctctggtccttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaat 19945010 Query: 241 aggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcntnaagcagaaa 300 ||||||||||||||||||||| ||||||| |||||||||||||||||| | ||||||||| Sbjct: 19945009 aggaataaggcttgctattattagaaatgcccaaaaaatatcatattcgtgaagcagaaa 19944950 Query: 301 cat-antgtactcccattaatgtggaataggcggaacttaaattanncaattcaattcag 359 ||| | ||||||||||||||||||||||||||||||| | ||||| |||||||| |||| Sbjct: 19944949 cataaatgtactcccattaatgtggaataggcggaac-tgaattagtcaattcaagtcag 19944891 Query: 360 cattgtcaatttatccagaacttctctcttttcctcggtgaaacaag 406 |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 19944890 cattgtcaatttatacagaatttctctcttttcctcggtgaaacaag 19944844 Score = 422 bits (213), Expect = e-115 Identities = 358/407 (87%), Gaps = 5/407 (1%) Strand = Plus / Plus Query: 1 cgaaantcaangcttcgntcnaaacggctacacccaatacgtcganactgcattgcccaa 60 ||||| | || |||||| | |||||| || |||||||||||||| ||| |||||||||| Sbjct: 10341166 cgaaaatgaaagcttcgataaaaacggatatacccaatacgtcgaaact-cattgcccaa 10341224 Query: 61 gggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaaacatatnnta 120 ||||| ||| ||| |||||||||||||||||||||| |||| ||||||||||| | || Sbjct: 10341225 gggtagagaaagaccgtttccacatcaaaaacaacaa-aaactagcgcaaacatgtaata 10341283 Query: 121 gcgnatncggaattggacccaagcccctcccatgggttctatncccgattcatanctaga 180 ||| || |||||||| | ||||||||| |||||||||||||| ||||||||||| ||||| Sbjct: 10341284 gcgtattcggaattgtaaccaagcccc-cccatgggttctatacccgattcataactaga 10341342 Query: 181 nagcttctctggnccttcactaaccggggctcaaagccctgaaatcgaaaangccaaaat 240 ||||||||||| ||||||| |||||| ||| |||| |||||||| |||| || ||||| Sbjct: 10341343 aagcttctctggtccttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaat 10341402 Query: 241 aggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcntnaagcagaaa 300 ||||||||||||||||||||| ||||||| |||||||||||||||||| | ||||||||| Sbjct: 10341403 aggaataaggcttgctattattagaaatgcccaaaaaatatcatattcgtgaagcagaaa 10341462 Query: 301 cat-antgtactcccattaatgtggaataggcggaacttaaattanncaattcaattcag 359 ||| | ||||||||||||||||||||||||||||||| | ||||| |||||||| |||| Sbjct: 10341463 cataaatgtactcccattaatgtggaataggcggaac-tgaattagtcaattcaagtcag 10341521 Query: 360 cattgtcaatttatccagaacttctctcttttcctcggtgaaacaag 406 |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 10341522 cattgtcaatttatacagaatttctctcttttcctcggtgaaacaag 10341568
>gb|AC074232.11| Oryza sativa chromosome 10 BAC OSJNBb0005J14 genomic sequence, complete sequence Length = 116932 Score = 430 bits (217), Expect = e-117 Identities = 358/407 (87%), Gaps = 4/407 (0%) Strand = Plus / Plus Query: 1 cgaaantcaangcttcgntcnaaacggctacacccaatacgtcganactgcattgcccaa 60 ||||| | || |||||| | |||||| || |||||||||||||| ||| |||||||||| Sbjct: 40796 cgaaaatgaaagcttcgataaaaacggatatacccaatacgtcgaaact-cattgcccaa 40854 Query: 61 gggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaaacatatnnta 120 ||||| ||| ||| |||||||||||||||||||||| |||| ||||||||||| | || Sbjct: 40855 gggtagagaaagaccgtttccacatcaaaaacaacaa-aaactagcgcaaacatgtaata 40913 Query: 121 gcgnatncggaattggacccaagcccctcccatgggttctatncccgattcatanctaga 180 ||| || |||||||| | ||||||||| |||||||||||||| ||||||||||| ||||| Sbjct: 40914 gcgtattcggaattgtaaccaagccccccccatgggttctatacccgattcataactaga 40973 Query: 181 nagcttctctggnccttcactaaccggggctcaaagccctgaaatcgaaaangccaaaat 240 ||||||||||| ||||||| |||||| ||| |||| |||||||| |||| || ||||| Sbjct: 40974 aagcttctctggtccttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaat 41033 Query: 241 aggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcntnaagcagaaa 300 ||||||||||||||||||||| ||||||| |||||||||||||||||| | ||||||||| Sbjct: 41034 aggaataaggcttgctattattagaaatgcccaaaaaatatcatattcgtgaagcagaaa 41093 Query: 301 cat-antgtactcccattaatgtggaataggcggaacttaaattanncaattcaattcag 359 ||| | ||||||||||||||||||||||||||||||| | ||||| |||||||| |||| Sbjct: 41094 cataaatgtactcccattaatgtggaataggcggaac-tgaattagtcaattcaagtcag 41152 Query: 360 cattgtcaatttatccagaacttctctcttttcctcggtgaaacaag 406 |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 41153 cattgtcaatttatacagaatttctctcttttcctcggtgaaacaag 41199
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 430 bits (217), Expect = e-117 Identities = 358/407 (87%), Gaps = 4/407 (0%) Strand = Plus / Minus Query: 1 cgaaantcaangcttcgntcnaaacggctacacccaatacgtcganactgcattgcccaa 60 ||||| | || |||||| | |||||| || |||||||||||||| ||| |||||||||| Sbjct: 19956523 cgaaaatgaaagcttcgataaaaacggatatacccaatacgtcgaaact-cattgcccaa 19956465 Query: 61 gggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaaacatatnnta 120 ||||| ||| ||| |||||||||||||||||||||| |||| ||||||||||| | || Sbjct: 19956464 gggtagagaaagaccgtttccacatcaaaaacaacaa-aaactagcgcaaacatgtaata 19956406 Query: 121 gcgnatncggaattggacccaagcccctcccatgggttctatncccgattcatanctaga 180 ||| || |||||||| | ||||||||| |||||||||||||| ||||||||||| ||||| Sbjct: 19956405 gcgtattcggaattgtaaccaagccccccccatgggttctatacccgattcataactaga 19956346 Query: 181 nagcttctctggnccttcactaaccggggctcaaagccctgaaatcgaaaangccaaaat 240 ||||||||||| ||||||| |||||| ||| |||| |||||||| |||| || ||||| Sbjct: 19956345 aagcttctctggtccttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaat 19956286 Query: 241 aggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcntnaagcagaaa 300 ||||||||||||||||||||| ||||||| |||||||||||||||||| | ||||||||| Sbjct: 19956285 aggaataaggcttgctattattagaaatgcccaaaaaatatcatattcgtgaagcagaaa 19956226 Query: 301 cat-antgtactcccattaatgtggaataggcggaacttaaattanncaattcaattcag 359 ||| | ||||||||||||||||||||||||||||||| | ||||| |||||||| |||| Sbjct: 19956225 cataaatgtactcccattaatgtggaataggcggaac-tgaattagtcaattcaagtcag 19956167 Query: 360 cattgtcaatttatccagaacttctctcttttcctcggtgaaacaag 406 |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 19956166 cattgtcaatttatacagaatttctctcttttcctcggtgaaacaag 19956120 Score = 422 bits (213), Expect = e-115 Identities = 358/407 (87%), Gaps = 5/407 (1%) Strand = Plus / Plus Query: 1 cgaaantcaangcttcgntcnaaacggctacacccaatacgtcganactgcattgcccaa 60 ||||| | || |||||| | |||||| || |||||||||||||| ||| |||||||||| Sbjct: 10347205 cgaaaatgaaagcttcgataaaaacggatatacccaatacgtcgaaact-cattgcccaa 10347263 Query: 61 gggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaaacatatnnta 120 ||||| ||| ||| |||||||||||||||||||||| |||| ||||||||||| | || Sbjct: 10347264 gggtagagaaagaccgtttccacatcaaaaacaacaa-aaactagcgcaaacatgtaata 10347322 Query: 121 gcgnatncggaattggacccaagcccctcccatgggttctatncccgattcatanctaga 180 ||| || |||||||| | ||||||||| |||||||||||||| ||||||||||| ||||| Sbjct: 10347323 gcgtattcggaattgtaaccaagcccc-cccatgggttctatacccgattcataactaga 10347381 Query: 181 nagcttctctggnccttcactaaccggggctcaaagccctgaaatcgaaaangccaaaat 240 ||||||||||| ||||||| |||||| ||| |||| |||||||| |||| || ||||| Sbjct: 10347382 aagcttctctggtccttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaat 10347441 Query: 241 aggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcntnaagcagaaa 300 ||||||||||||||||||||| ||||||| |||||||||||||||||| | ||||||||| Sbjct: 10347442 aggaataaggcttgctattattagaaatgcccaaaaaatatcatattcgtgaagcagaaa 10347501 Query: 301 cat-antgtactcccattaatgtggaataggcggaacttaaattanncaattcaattcag 359 ||| | ||||||||||||||||||||||||||||||| | ||||| |||||||| |||| Sbjct: 10347502 cataaatgtactcccattaatgtggaataggcggaac-tgaattagtcaattcaagtcag 10347560 Query: 360 cattgtcaatttatccagaacttctctcttttcctcggtgaaacaag 406 |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 10347561 cattgtcaatttatacagaatttctctcttttcctcggtgaaacaag 10347607
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 430 bits (217), Expect = e-117 Identities = 358/407 (87%), Gaps = 4/407 (0%) Strand = Plus / Plus Query: 1 cgaaantcaangcttcgntcnaaacggctacacccaatacgtcganactgcattgcccaa 60 ||||| | || |||||| | |||||| || |||||||||||||| ||| |||||||||| Sbjct: 11285188 cgaaaatgaaagcttcgataaaaacggatatacccaatacgtcgaaact-cattgcccaa 11285246 Query: 61 gggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaaacatatnnta 120 ||||| ||| ||| |||||||||||||||||||||| |||| ||||||||||| | || Sbjct: 11285247 gggtagagaaagaccgtttccacatcaaaaacaacaa-aaactagcgcaaacatgtaata 11285305 Query: 121 gcgnatncggaattggacccaagcccctcccatgggttctatncccgattcatanctaga 180 ||| || |||||||| | ||||||||| |||||||||||||| ||||||||||| ||||| Sbjct: 11285306 gcgtattcggaattgtaaccaagccccccccatgggttctatacccgattcataactaga 11285365 Query: 181 nagcttctctggnccttcactaaccggggctcaaagccctgaaatcgaaaangccaaaat 240 ||||||||||| ||||||| |||||| ||| |||| |||||||| |||| || ||||| Sbjct: 11285366 aagcttctctggtccttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaat 11285425 Query: 241 aggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcntnaagcagaaa 300 ||||||||||||||||||||| ||||||| |||||||||||||||||| | ||||||||| Sbjct: 11285426 aggaataaggcttgctattattagaaatgcccaaaaaatatcatattcgtgaagcagaaa 11285485 Query: 301 cat-antgtactcccattaatgtggaataggcggaacttaaattanncaattcaattcag 359 ||| | ||||||||||||||||||||||||||||||| | ||||| |||||||| |||| Sbjct: 11285486 cataaatgtactcccattaatgtggaataggcggaac-tgaattagtcaattcaagtcag 11285544 Query: 360 cattgtcaatttatccagaacttctctcttttcctcggtgaaacaag 406 |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 11285545 cattgtcaatttatacagaatttctctcttttcctcggtgaaacaag 11285591 Score = 392 bits (198), Expect = e-106 Identities = 356/408 (87%), Gaps = 6/408 (1%) Strand = Plus / Plus Query: 1 cgaaantcaangcttcgntcnaaacggctacacccaatacgtcganactgcattgcccaa 60 ||||| | || |||||| | |||||| || |||||||||||||| ||| |||||||||| Sbjct: 5608382 cgaaaatgaaagcttcgataaaaacggatatacccaatacgtcgaaact-cattgcccaa 5608440 Query: 61 gggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaaacatatnnta 120 ||||| ||| ||| |||||||||||||||||||||| |||| ||||||||||| | || Sbjct: 5608441 gggtagagaaagaccgtttccacatcaaaaacaacaa-aaactagcgcaaacatgtaata 5608499 Query: 121 gcgnatncggaattggacccaagcccctcccatgggttctatncccgattcatanctaga 180 ||| || |||||||| | ||||||||| |||||||||||||| ||||||||||| ||||| Sbjct: 5608500 gcgtattcggaattgtaaccaagcccc-cccatgggttctatacccgattcataactaga 5608558 Query: 181 nagcttctctggnccttcactaaccggggctcaaagccctgaaatcgaaaangccaaaa- 239 ||||||||||| ||||||| |||||| ||| |||| |||||||| |||| || |||| Sbjct: 5608559 aagcttctctggtccttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaaa 5608618 Query: 240 taggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcntnaagcagaa 299 |||||||||||||||||||||| ||||||| |||||||||||||||||| | |||||||| Sbjct: 5608619 taggaataaggcttgctattattagaaatgcccaaaaaatatcatattcgtgaagcagaa 5608678 Query: 300 acat-antgtactcccattaatgtggaataggcggaacttaaattanncaattcaattca 358 |||| | ||||||||||||||||||||||||||||||| | ||||| |||||||| ||| Sbjct: 5608679 acataaatgtactcccattaatgtggaataggcggaac-tgaattagtcaattcaagtca 5608737 Query: 359 gcattgtcaatttatccagaacttctctcttttcctcggtgaaacaag 406 ||||||||||||| | ||||| |||||| ||||||||||||||||||| Sbjct: 5608738 gcattgtcaatttttacagaatttctcttttttcctcggtgaaacaag 5608785
>emb|BX119951.3|CNS09S4U Oryza sativa chromosome 12, . BAC OJ1523_A01 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 127267 Score = 430 bits (217), Expect = e-117 Identities = 358/407 (87%), Gaps = 4/407 (0%) Strand = Plus / Minus Query: 1 cgaaantcaangcttcgntcnaaacggctacacccaatacgtcganactgcattgcccaa 60 ||||| | || |||||| | |||||| || |||||||||||||| ||| |||||||||| Sbjct: 86537 cgaaaatgaaagcttcgataaaaacggatatacccaatacgtcgaaact-cattgcccaa 86479 Query: 61 gggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaaacatatnnta 120 ||||| ||| ||| |||||||||||||||||||||| |||| ||||||||||| | || Sbjct: 86478 gggtagagaaagaccgtttccacatcaaaaacaacaa-aaactagcgcaaacatgtaata 86420 Query: 121 gcgnatncggaattggacccaagcccctcccatgggttctatncccgattcatanctaga 180 ||| || |||||||| | ||||||||| |||||||||||||| ||||||||||| ||||| Sbjct: 86419 gcgtattcggaattgtaaccaagccccccccatgggttctatacccgattcataactaga 86360 Query: 181 nagcttctctggnccttcactaaccggggctcaaagccctgaaatcgaaaangccaaaat 240 ||||||||||| ||||||| |||||| ||| |||| |||||||| |||| || ||||| Sbjct: 86359 aagcttctctggtccttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaat 86300 Query: 241 aggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcntnaagcagaaa 300 ||||||||||||||||||||| ||||||| |||||||||||||||||| | ||||||||| Sbjct: 86299 aggaataaggcttgctattattagaaatgcccaaaaaatatcatattcgtgaagcagaaa 86240 Query: 301 cat-antgtactcccattaatgtggaataggcggaacttaaattanncaattcaattcag 359 ||| | ||||||||||||||||||||||||||||||| | ||||| |||||||| |||| Sbjct: 86239 cataaatgtactcccattaatgtggaataggcggaac-tgaattagtcaattcaagtcag 86181 Query: 360 cattgtcaatttatccagaacttctctcttttcctcggtgaaacaag 406 |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 86180 cattgtcaatttatacagaatttctctcttttcctcggtgaaacaag 86134
>dbj|AP006728.1| Oryza nivara chloroplast DNA, complete genome Length = 134494 Score = 430 bits (217), Expect = e-117 Identities = 358/407 (87%), Gaps = 4/407 (0%) Strand = Plus / Plus Query: 1 cgaaantcaangcttcgntcnaaacggctacacccaatacgtcganactgcattgcccaa 60 ||||| | || |||||| | |||||| || |||||||||||||| ||| |||||||||| Sbjct: 49282 cgaaaatgaaagcttcgataaaaacggatatacccaatacgtcgaaact-cattgcccaa 49340 Query: 61 gggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaaacatatnnta 120 ||||| ||| ||| |||||||||||||||||||||| |||| ||||||||||| | || Sbjct: 49341 gggtagagaaagaccgtttccacatcaaaaacaacaa-aaactagcgcaaacatgtaata 49399 Query: 121 gcgnatncggaattggacccaagcccctcccatgggttctatncccgattcatanctaga 180 ||| || |||||||| | ||||||||| |||||||||||||| ||||||||||| ||||| Sbjct: 49400 gcgtattcggaattgtaaccaagccccccccatgggttctatacccgattcataactaga 49459 Query: 181 nagcttctctggnccttcactaaccggggctcaaagccctgaaatcgaaaangccaaaat 240 ||||||||||| ||||||| |||||| ||| |||| |||||||| |||| || ||||| Sbjct: 49460 aagcttctctggtccttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaat 49519 Query: 241 aggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcntnaagcagaaa 300 ||||||||||||||||||||| ||||||| |||||||||||||||||| | ||||||||| Sbjct: 49520 aggaataaggcttgctattattagaaatgcccaaaaaatatcatattcgtgaagcagaaa 49579 Query: 301 cat-antgtactcccattaatgtggaataggcggaacttaaattanncaattcaattcag 359 ||| | ||||||||||||||||||||||||||||||| | ||||| |||||||| |||| Sbjct: 49580 cataaatgtactcccattaatgtggaataggcggaac-tgaattagtcaattcaagtcag 49638 Query: 360 cattgtcaatttatccagaacttctctcttttcctcggtgaaacaag 406 |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 49639 cattgtcaatttatacagaatttctctcttttcctcggtgaaacaag 49685
>gb|AC122148.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone OSJNAb0075K12, complete sequence Length = 125936 Score = 422 bits (213), Expect = e-115 Identities = 358/407 (87%), Gaps = 5/407 (1%) Strand = Plus / Plus Query: 1 cgaaantcaangcttcgntcnaaacggctacacccaatacgtcganactgcattgcccaa 60 ||||| | || |||||| | |||||| || |||||||||||||| ||| |||||||||| Sbjct: 47558 cgaaaatgaaagcttcgataaaaacggatatacccaatacgtcgaaact-cattgcccaa 47616 Query: 61 gggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaaacatatnnta 120 ||||| ||| ||| |||||||||||||||||||||| |||| ||||||||||| | || Sbjct: 47617 gggtagagaaagaccgtttccacatcaaaaacaacaa-aaactagcgcaaacatgtaata 47675 Query: 121 gcgnatncggaattggacccaagcccctcccatgggttctatncccgattcatanctaga 180 ||| || |||||||| | ||||||||| |||||||||||||| ||||||||||| ||||| Sbjct: 47676 gcgtattcggaattgtaaccaagcccc-cccatgggttctatacccgattcataactaga 47734 Query: 181 nagcttctctggnccttcactaaccggggctcaaagccctgaaatcgaaaangccaaaat 240 ||||||||||| ||||||| |||||| ||| |||| |||||||| |||| || ||||| Sbjct: 47735 aagcttctctggtccttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaat 47794 Query: 241 aggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcntnaagcagaaa 300 ||||||||||||||||||||| ||||||| |||||||||||||||||| | ||||||||| Sbjct: 47795 aggaataaggcttgctattattagaaatgcccaaaaaatatcatattcgtgaagcagaaa 47854 Query: 301 cat-antgtactcccattaatgtggaataggcggaacttaaattanncaattcaattcag 359 ||| | ||||||||||||||||||||||||||||||| | ||||| |||||||| |||| Sbjct: 47855 cataaatgtactcccattaatgtggaataggcggaac-tgaattagtcaattcaagtcag 47913 Query: 360 cattgtcaatttatccagaacttctctcttttcctcggtgaaacaag 406 |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 47914 cattgtcaatttatacagaatttctctcttttcctcggtgaaacaag 47960
>gb|AC092750.2| Oryza sativa (japonica cultivar-group) cultivar Nipponbare from chromosome 10, complete sequence Length = 134933 Score = 422 bits (213), Expect = e-115 Identities = 358/407 (87%), Gaps = 5/407 (1%) Strand = Plus / Plus Query: 1 cgaaantcaangcttcgntcnaaacggctacacccaatacgtcganactgcattgcccaa 60 ||||| | || |||||| | |||||| || |||||||||||||| ||| |||||||||| Sbjct: 122491 cgaaaatgaaagcttcgataaaaacggatatacccaatacgtcgaaact-cattgcccaa 122549 Query: 61 gggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaaacatatnnta 120 ||||| ||| ||| |||||||||||||||||||||| |||| ||||||||||| | || Sbjct: 122550 gggtagagaaagaccgtttccacatcaaaaacaacaa-aaactagcgcaaacatgtaata 122608 Query: 121 gcgnatncggaattggacccaagcccctcccatgggttctatncccgattcatanctaga 180 ||| || |||||||| | ||||||||| |||||||||||||| ||||||||||| ||||| Sbjct: 122609 gcgtattcggaattgtaaccaagcccc-cccatgggttctatacccgattcataactaga 122667 Query: 181 nagcttctctggnccttcactaaccggggctcaaagccctgaaatcgaaaangccaaaat 240 ||||||||||| ||||||| |||||| ||| |||| |||||||| |||| || ||||| Sbjct: 122668 aagcttctctggtccttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaat 122727 Query: 241 aggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcntnaagcagaaa 300 ||||||||||||||||||||| ||||||| |||||||||||||||||| | ||||||||| Sbjct: 122728 aggaataaggcttgctattattagaaatgcccaaaaaatatcatattcgtgaagcagaaa 122787 Query: 301 cat-antgtactcccattaatgtggaataggcggaacttaaattanncaattcaattcag 359 ||| | ||||||||||||||||||||||||||||||| | ||||| |||||||| |||| Sbjct: 122788 cataaatgtactcccattaatgtggaataggcggaac-tgaattagtcaattcaagtcag 122846 Query: 360 cattgtcaatttatccagaacttctctcttttcctcggtgaaacaag 406 |||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 122847 cattgtcaatttatacagaatttctctcttttcctcggtgaaacaag 122893
>emb|X17438.1|CHZMNPOO Maize chloroplast ndhC, psbG genes for NDH-C, PSII-G and ORF159 Length = 1933 Score = 420 bits (212), Expect = e-114 Identities = 329/369 (89%), Gaps = 4/369 (1%) Strand = Plus / Minus Query: 22 aaacggctacacccaatacgtcganactgcattgcccaagggtataganngacggtttcc 81 |||||| ||||||||||||||||| ||| ||||||||||||||| ||| ||| |||||| Sbjct: 366 aaacggatacacccaatacgtcgaaact-cattgcccaagggtagagaaagactgtttcc 308 Query: 82 acatcaaaaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggaccca 141 |||||||||||||||| |||| ||||||||||| | ||||| || |||||||| | ||| Sbjct: 307 acatcaaaaacaacaa-aaactagcgcaaacatgtaatagcgtattcggaattgtaacca 249 Query: 142 agcccctcccatgggttctatncccgattcatanctaganagcttctctggnccttcact 201 |||||| |||||||||||||| ||||| ||||| ||||| ||||||||||| |||||||| Sbjct: 248 agccccccccatgggttctatacccgantcataactagaaagcttctctggtccttcact 189 Query: 202 aaccggggctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattat 261 |||||||||| |||| ||||||||| |||| |||||||||||||||||||||||||||| Sbjct: 188 aaccggggctaaaagtcctgaaatccaaaataccaaaataggaataaggcttgctattat 129 Query: 262 nagaaatgtccaaaaaatatcatattcntnaagcagaaacat-antgtactcccattaat 320 |||||||||||||||||||||||||| | |||||||||||| | ||||||||||||||| Sbjct: 128 tagaaatgtccaaaaaatatcatattcgtgaagcagaaacataaatgtactcccattaat 69 Query: 321 gtggaataggcggaacttaaattanncaattcaattcagcattgtcaatttatccagaac 380 |||||||||||||||| | ||||| |||||||| | ||||||||||||||||||||| Sbjct: 68 gtggaataggcggaac-tgaattagtcaattcaagttgacattgtcaatttatccagaac 10 Query: 381 ttctctctt 389 ||||||||| Sbjct: 9 ttctctctt 1
>emb|X00408.1|CHHV01 Hordeum vulgare chloroplast genes for ATPase subunits B and E, transfer RNA2-Met and transfer RNA1-Val Length = 3819 Score = 414 bits (209), Expect = e-112 Identities = 240/254 (94%) Strand = Plus / Minus Query: 182 agcttctctggnccttcactaaccggggctcaaagccctgaaatcgaaaangccaaaata 241 ||||||||||| |||||||||||||||||| ||| |||||||||||||| ||||||||| Sbjct: 3818 agcttctctggtccttcactaaccggggctaaaatgcctgaaatcgaaaatgccaaaata 3759 Query: 242 ggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcntnaagcagaaac 301 |||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||| Sbjct: 3758 ggaataaggcttgctattattagaaatgtccaaaaaatatcatattcgtgaagcagaaac 3699 Query: 302 atantgtactcccattaatgtggaataggcggaacttaaattanncaattcaattcagca 361 ||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct: 3698 ataatgtactcccattaatgtggaataggcggaacttaaattagtcaattcaattcagca 3639 Query: 362 ttgtcaatttatccagaacttctctcttttcctcggtgaaacaagaatcttttnngntca 421 ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct: 3638 ttgtcaatttatccagaacttctctcttttcctcggtgaaacaagaatcttttttgttca 3579 Query: 422 aacaaaagcgctta 435 |||||||||||||| Sbjct: 3578 aacaaaagcgctta 3565
>emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F23, complete sequence Length = 130273 Score = 396 bits (200), Expect = e-107 Identities = 339/386 (87%), Gaps = 4/386 (1%) Strand = Plus / Plus Query: 22 aaacggctacacccaatacgtcganactgcattgcccaagggtataganngacggtttcc 81 |||||| || |||||||||||||| ||| |||||||||| |||| ||| ||| ||||| Sbjct: 77642 aaacggatatacccaatacgtcgaaact-cattgcccaaaggtagagaaagaccgtttcg 77700 Query: 82 acatcaaaaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggaccca 141 |||||||||||||||| |||| ||||||||||| | ||||| || |||||||| | ||| Sbjct: 77701 acatcaaaaacaacaa-aaactagcgcaaacatgtaatagcgtattcggaattgtaacca 77759 Query: 142 agcccctcccatgggttctatncccgattcatanctaganagcttctctggnccttcact 201 |||||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||||||| Sbjct: 77760 agccccccccatgggttctatacccgattcataactagaaagcttctctggtccttcacg 77819 Query: 202 aaccggggctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattat 261 |||||| ||| |||| |||||||| |||| || ||||||| |||||||||||||||||| Sbjct: 77820 aaccggagctaaaagtgctgaaatccaaaatgctaaaatagaaataaggcttgctattat 77879 Query: 262 nagaaatgtccaaaaaatatcatattcntnaagcagaaacat-antgtactcccattaat 320 ||||||| |||||||||||||||||| | |||||||||||| | ||||||||||||||| Sbjct: 77880 tagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactcccattaat 77939 Query: 321 gtggaataggcggaacttaaattanncaattcaattcagcattgtcaatttatccagaac 380 |||||||||||||||| | ||||| |||||||| |||||||||||||||||| ||||| Sbjct: 77940 gtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttatacagaat 77998 Query: 381 ttctctcttttcctcggtgaaacaag 406 |||||||||||||| ||||||||||| Sbjct: 77999 ttctctcttttccttggtgaaacaag 78024
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 396 bits (200), Expect = e-107 Identities = 339/386 (87%), Gaps = 4/386 (1%) Strand = Plus / Plus Query: 22 aaacggctacacccaatacgtcganactgcattgcccaagggtataganngacggtttcc 81 |||||| || |||||||||||||| ||| |||||||||| |||| ||| ||| ||||| Sbjct: 23634961 aaacggatatacccaatacgtcgaaact-cattgcccaaaggtagagaaagaccgtttcg 23635019 Query: 82 acatcaaaaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggaccca 141 |||||||||||||||| |||| ||||||||||| | ||||| || |||||||| | ||| Sbjct: 23635020 acatcaaaaacaacaa-aaactagcgcaaacatgtaatagcgtattcggaattgtaacca 23635078 Query: 142 agcccctcccatgggttctatncccgattcatanctaganagcttctctggnccttcact 201 |||||| |||||||||||||| ||||||||||| ||||| ||||||||||| ||||||| Sbjct: 23635079 agccccccccatgggttctatacccgattcataactagaaagcttctctggtccttcacg 23635138 Query: 202 aaccggggctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattat 261 |||||| ||| |||| |||||||| |||| || ||||||| |||||||||||||||||| Sbjct: 23635139 aaccggagctaaaagtgctgaaatccaaaatgctaaaatagaaataaggcttgctattat 23635198 Query: 262 nagaaatgtccaaaaaatatcatattcntnaagcagaaacat-antgtactcccattaat 320 ||||||| |||||||||||||||||| | |||||||||||| | ||||||||||||||| Sbjct: 23635199 tagaaatgcccaaaaaatatcatattcgtgaagcagaaacataaatgtactcccattaat 23635258 Query: 321 gtggaataggcggaacttaaattanncaattcaattcagcattgtcaatttatccagaac 380 |||||||||||||||| | ||||| |||||||| |||||||||||||||||| ||||| Sbjct: 23635259 gtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttatacagaat 23635317 Query: 381 ttctctcttttcctcggtgaaacaag 406 |||||||||||||| ||||||||||| Sbjct: 23635318 ttctctcttttccttggtgaaacaag 23635343 Score = 385 bits (194), Expect = e-104 Identities = 341/388 (87%), Gaps = 6/388 (1%) Strand = Plus / Plus Query: 22 aaacggctacacccaatacgtcganactgcattgcccaagggtataganngacggtttcc 81 |||||| || |||||||||||||| ||| ||||||||||||||| ||| ||| |||||| Sbjct: 14048001 aaacggatatacccaatacgtcgaaact-cattgcccaagggtagagaaagaccgtttcc 14048059 Query: 82 acatcaaaaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggaccca 141 |||||||||||||||| |||| ||||||||||| | ||||| || | |||||| | ||| Sbjct: 14048060 acatcaaaaacaacaa-aaactagcgcaaacatgtaatagcgtattcagaattgtaacca 14048118 Query: 142 agcccctccc-atgggttctatncccgattcatanctaganagcttctctggnccttcac 200 |||||| ||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||||| Sbjct: 14048119 agcccccccccatgggttctatacccgattcataactagaaagcttctctggtccttcac 14048178 Query: 201 taaccggggctcaaa-gccctgaaatcgaaaangccaaaataggaataaggcttgctatt 259 |||||| ||| ||| | |||||||| |||| || |||||||||||||||||||||||| Sbjct: 14048179 gaaccggagcttaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgctatt 14048238 Query: 260 atnagaaatgtccaaaaaatatcatattcntnaagcagaaacat-antgtactcccatta 318 || ||||||| ||||||||||| |||||| | |||||||||||| | ||||||||||||| Sbjct: 14048239 attagaaatgcccaaaaaatattatattcgtgaagcagaaacataaatgtactcccatta 14048298 Query: 319 atgtggaataggcggaacttaaattanncaattcaattcagcattgtcaatttatccaga 378 |||||||||||||||||| | ||||| |||||||| |||||||||||||||||| |||| Sbjct: 14048299 atgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttatacaga 14048357 Query: 379 acttctctcttttcctcggtgaaacaag 406 | |||||||||||||||||||||||||| Sbjct: 14048358 atttctctcttttcctcggtgaaacaag 14048385 Score = 375 bits (189), Expect = e-101 Identities = 356/412 (86%), Gaps = 9/412 (2%) Strand = Plus / Minus Query: 1 cgaaantcaangcttcgntcnaaacggctacacccaatacgtcganactgcattgcccaa 60 ||||| | || |||||| | |||||| || |||||||||||||| ||| |||||||||| Sbjct: 9748978 cgaaaatgaaagcttcgataaaaacggatatacccaatacgtcgaaact-cattgcccaa 9748920 Query: 61 gggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaaacatatnnta 120 ||||| ||| ||| |||||||||||||||||||||| |||| ||||||||||| | || Sbjct: 9748919 gggtagagaaagaccgtttccacatcaaaaacaacaa-aaactagcgcaaacatgtaata 9748861 Query: 121 gcgnatncggaattggacccaagcccctccc----atgggttctatncccgattcatanc 176 ||| || |||||||| | ||||||||| ||| ||||||||||| ||||||||||| | Sbjct: 9748860 gcgtattcggaattgtaaccaagccccccccccccatgggttctatacccgattcataac 9748801 Query: 177 taganagcttctctggnccttcactaaccggggctcaaa-gccctgaaatcgaaaangcc 235 |||| ||||||||||| ||||||| |||||| ||| ||| | |||||||| |||| || Sbjct: 9748800 tagaaagcttctctggtccttcacaaaccggagcttaaaagtgctgaaatccaaaatgct 9748741 Query: 236 aaaataggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcntnaagc 295 |||||||||||||||||||||||||| ||||||| |||||||||||||||||| | |||| Sbjct: 9748740 aaaataggaataaggcttgctattattagaaatgcccaaaaaatatcatattcgtgaagc 9748681 Query: 296 agaaacat-antgtactcccattaatgtggaataggcggaacttaaattanncaattcaa 354 |||||||| | |||||||||||||||||||||||| ||||| | ||||| |||||||| Sbjct: 9748680 agaaacataaatgtactcccattaatgtggaatagttggaac-tgaattagtcaattcaa 9748622 Query: 355 ttcagcattgtcaatttatccagaacttctctcttttcctcggtgaaacaag 406 |||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 9748621 gtcagcattgtcaatttatacagaatttctctcttttcctcggtgaaacaag 9748570
>emb|BX000560.1|CNS08CE6 Oryza sativa chromosome 12, . BAC OSJNBa0021D06 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 139684 Score = 392 bits (198), Expect = e-106 Identities = 356/408 (87%), Gaps = 6/408 (1%) Strand = Plus / Minus Query: 1 cgaaantcaangcttcgntcnaaacggctacacccaatacgtcganactgcattgcccaa 60 ||||| | || |||||| | |||||| || |||||||||||||| ||| |||||||||| Sbjct: 44492 cgaaaatgaaagcttcgataaaaacggatatacccaatacgtcgaaact-cattgcccaa 44434 Query: 61 gggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaaacatatnnta 120 ||||| ||| ||| |||||||||||||||||||||| |||| ||||||||||| | || Sbjct: 44433 gggtagagaaagaccgtttccacatcaaaaacaacaa-aaactagcgcaaacatgtaata 44375 Query: 121 gcgnatncggaattggacccaagcccctcccatgggttctatncccgattcatanctaga 180 ||| || |||||||| | ||||||||| |||||||||||||| ||||||||||| ||||| Sbjct: 44374 gcgtattcggaattgtaaccaagcccc-cccatgggttctatacccgattcataactaga 44316 Query: 181 nagcttctctggnccttcactaaccggggctcaaagccctgaaatcgaaaangccaaaa- 239 ||||||||||| ||||||| |||||| ||| |||| |||||||| |||| || |||| Sbjct: 44315 aagcttctctggtccttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaaa 44256 Query: 240 taggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcntnaagcagaa 299 |||||||||||||||||||||| ||||||| |||||||||||||||||| | |||||||| Sbjct: 44255 taggaataaggcttgctattattagaaatgcccaaaaaatatcatattcgtgaagcagaa 44196 Query: 300 acat-antgtactcccattaatgtggaataggcggaacttaaattanncaattcaattca 358 |||| | ||||||||||||||||||||||||||||||| | ||||| |||||||| ||| Sbjct: 44195 acataaatgtactcccattaatgtggaataggcggaac-tgaattagtcaattcaagtca 44137 Query: 359 gcattgtcaatttatccagaacttctctcttttcctcggtgaaacaag 406 ||||||||||||| | ||||| |||||| ||||||||||||||||||| Sbjct: 44136 gcattgtcaatttttacagaatttctcttttttcctcggtgaaacaag 44089
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 387 bits (195), Expect = e-104 Identities = 358/413 (86%), Gaps = 10/413 (2%) Strand = Plus / Minus Query: 1 cgaaantcaangcttcgntcnaaacggctacacccaatacgtcganactgcattgcccaa 60 ||||| | || |||||| | |||||| || |||||||||||||| ||| |||||||||| Sbjct: 12589429 cgaaaatgaaagcttcgataaaaacggatatacccaatacgtcgaaact-cattgcccaa 12589371 Query: 61 gggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaaacatatnnta 120 ||||| ||| ||| |||||||||||||||||||||| |||| ||||||||||| | || Sbjct: 12589370 gggtagagaaagaccgtttccacatcaaaaacaacaa-aaactagcgcaaacatgtaata 12589312 Query: 121 gcgnatncggaattggacccaagcc----cctcccatgggttctatncccgattcatanc 176 ||| || |||||||| | ||||||| || |||||||||||||| ||||||||||| | Sbjct: 12589311 gcgtattcggaattgtaaccaagcctcctccccccatgggttctatacccgattcataac 12589252 Query: 177 taganagcttctctggnccttcactaaccggggctcaaagccctgaaatcgaaaangcca 236 |||| ||||||||||| ||||||| |||||| ||| |||| |||||||| |||| || | Sbjct: 12589251 tagaaagcttctctggtccttcacgaaccggagctaaaagtgctgaaatccaaaatgcta 12589192 Query: 237 aaa--taggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcntnaag 294 ||| |||||||||||||||||||||| ||||||| |||||||||||||||||| | ||| Sbjct: 12589191 aaaaataggaataaggcttgctattattagaaatgcccaaaaaatatcatattcatgaag 12589132 Query: 295 cagaaacat-antgtactcccattaatgtggaataggcggaacttaaattanncaattca 353 ||||||||| | ||||||||||||||||||||||||||||||| | ||||| ||||||| Sbjct: 12589131 cagaaacataaatgtactcccattaatgtggaataggcggaac-tgaattagtcaattca 12589073 Query: 354 attcagcattgtcaatttatccagaacttctctcttttcctcggtgaaacaag 406 | |||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 12589072 agtcagcattgtcaatttatacagaatttctctcttttcctcggtgaaacaag 12589020
>dbj|AP004757.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0652D10 Length = 156744 Score = 387 bits (195), Expect = e-104 Identities = 358/413 (86%), Gaps = 10/413 (2%) Strand = Plus / Minus Query: 1 cgaaantcaangcttcgntcnaaacggctacacccaatacgtcganactgcattgcccaa 60 ||||| | || |||||| | |||||| || |||||||||||||| ||| |||||||||| Sbjct: 71742 cgaaaatgaaagcttcgataaaaacggatatacccaatacgtcgaaact-cattgcccaa 71684 Query: 61 gggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaaacatatnnta 120 ||||| ||| ||| |||||||||||||||||||||| |||| ||||||||||| | || Sbjct: 71683 gggtagagaaagaccgtttccacatcaaaaacaacaa-aaactagcgcaaacatgtaata 71625 Query: 121 gcgnatncggaattggacccaagcc----cctcccatgggttctatncccgattcatanc 176 ||| || |||||||| | ||||||| || |||||||||||||| ||||||||||| | Sbjct: 71624 gcgtattcggaattgtaaccaagcctcctccccccatgggttctatacccgattcataac 71565 Query: 177 taganagcttctctggnccttcactaaccggggctcaaagccctgaaatcgaaaangcca 236 |||| ||||||||||| ||||||| |||||| ||| |||| |||||||| |||| || | Sbjct: 71564 tagaaagcttctctggtccttcacgaaccggagctaaaagtgctgaaatccaaaatgcta 71505 Query: 237 aaa--taggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcntnaag 294 ||| |||||||||||||||||||||| ||||||| |||||||||||||||||| | ||| Sbjct: 71504 aaaaataggaataaggcttgctattattagaaatgcccaaaaaatatcatattcatgaag 71445 Query: 295 cagaaacat-antgtactcccattaatgtggaataggcggaacttaaattanncaattca 353 ||||||||| | ||||||||||||||||||||||||||||||| | ||||| ||||||| Sbjct: 71444 cagaaacataaatgtactcccattaatgtggaataggcggaac-tgaattagtcaattca 71386 Query: 354 attcagcattgtcaatttatccagaacttctctcttttcctcggtgaaacaag 406 | |||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 71385 agtcagcattgtcaatttatacagaatttctctcttttcctcggtgaaacaag 71333
>emb|AL731596.3|OSJN00236 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0024J22, complete sequence Length = 174430 Score = 385 bits (194), Expect = e-104 Identities = 341/388 (87%), Gaps = 6/388 (1%) Strand = Plus / Plus Query: 22 aaacggctacacccaatacgtcganactgcattgcccaagggtataganngacggtttcc 81 |||||| || |||||||||||||| ||| ||||||||||||||| ||| ||| |||||| Sbjct: 161881 aaacggatatacccaatacgtcgaaact-cattgcccaagggtagagaaagaccgtttcc 161939 Query: 82 acatcaaaaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggaccca 141 |||||||||||||||| |||| ||||||||||| | ||||| || | |||||| | ||| Sbjct: 161940 acatcaaaaacaacaa-aaactagcgcaaacatgtaatagcgtattcagaattgtaacca 161998 Query: 142 agcccctccc-atgggttctatncccgattcatanctaganagcttctctggnccttcac 200 |||||| ||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||||| Sbjct: 161999 agcccccccccatgggttctatacccgattcataactagaaagcttctctggtccttcac 162058 Query: 201 taaccggggctcaaa-gccctgaaatcgaaaangccaaaataggaataaggcttgctatt 259 |||||| ||| ||| | |||||||| |||| || |||||||||||||||||||||||| Sbjct: 162059 gaaccggagcttaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgctatt 162118 Query: 260 atnagaaatgtccaaaaaatatcatattcntnaagcagaaacat-antgtactcccatta 318 || ||||||| ||||||||||| |||||| | |||||||||||| | ||||||||||||| Sbjct: 162119 attagaaatgcccaaaaaatattatattcgtgaagcagaaacataaatgtactcccatta 162178 Query: 319 atgtggaataggcggaacttaaattanncaattcaattcagcattgtcaatttatccaga 378 |||||||||||||||||| | ||||| |||||||| |||||||||||||||||| |||| Sbjct: 162179 atgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttatacaga 162237 Query: 379 acttctctcttttcctcggtgaaacaag 406 | |||||||||||||||||||||||||| Sbjct: 162238 atttctctcttttcctcggtgaaacaag 162265
>emb|AL662942.4|OSJN00135 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0033H08, complete sequence Length = 141899 Score = 385 bits (194), Expect = e-104 Identities = 341/388 (87%), Gaps = 6/388 (1%) Strand = Plus / Minus Query: 22 aaacggctacacccaatacgtcganactgcattgcccaagggtataganngacggtttcc 81 |||||| || |||||||||||||| ||| ||||||||||||||| ||| ||| |||||| Sbjct: 124891 aaacggatatacccaatacgtcgaaact-cattgcccaagggtagagaaagaccgtttcc 124833 Query: 82 acatcaaaaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggaccca 141 |||||||||||||||| |||| ||||||||||| | ||||| || | |||||| | ||| Sbjct: 124832 acatcaaaaacaacaa-aaactagcgcaaacatgtaatagcgtattcagaattgtaacca 124774 Query: 142 agcccctccc-atgggttctatncccgattcatanctaganagcttctctggnccttcac 200 |||||| ||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||||| Sbjct: 124773 agcccccccccatgggttctatacccgattcataactagaaagcttctctggtccttcac 124714 Query: 201 taaccggggctcaaa-gccctgaaatcgaaaangccaaaataggaataaggcttgctatt 259 |||||| ||| ||| | |||||||| |||| || |||||||||||||||||||||||| Sbjct: 124713 gaaccggagcttaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgctatt 124654 Query: 260 atnagaaatgtccaaaaaatatcatattcntnaagcagaaacat-antgtactcccatta 318 || ||||||| ||||||||||| |||||| | |||||||||||| | ||||||||||||| Sbjct: 124653 attagaaatgcccaaaaaatattatattcgtgaagcagaaacataaatgtactcccatta 124594 Query: 319 atgtggaataggcggaacttaaattanncaattcaattcagcattgtcaatttatccaga 378 |||||||||||||||||| | ||||| |||||||| |||||||||||||||||| |||| Sbjct: 124593 atgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttatacaga 124535 Query: 379 acttctctcttttcctcggtgaaacaag 406 | |||||||||||||||||||||||||| Sbjct: 124534 atttctctcttttcctcggtgaaacaag 124507
>dbj|AK069240.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010F18, full insert sequence Length = 3557 Score = 385 bits (194), Expect = e-104 Identities = 341/388 (87%), Gaps = 6/388 (1%) Strand = Plus / Minus Query: 22 aaacggctacacccaatacgtcganactgcattgcccaagggtataganngacggtttcc 81 |||||| || |||||||||||||| ||| ||||||||||||||| ||| ||| |||||| Sbjct: 1740 aaacggatatacccaatacgtcgaaact-cattgcccaagggtagagaaagaccgtttcc 1682 Query: 82 acatcaaaaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggaccca 141 |||||||||||||||| |||| ||||||||||| | ||||| || | |||||| | ||| Sbjct: 1681 acatcaaaaacaacaa-aaactagcgcaaacatgtaatagcgtattcagaattgtaacca 1623 Query: 142 agcccctccc-atgggttctatncccgattcatanctaganagcttctctggnccttcac 200 |||||| ||| ||||||||||| ||||||||||| ||||| ||||||||||| ||||||| Sbjct: 1622 agcccccccccatgggttctatacccgattcataactagaaagcttctctggtccttcac 1563 Query: 201 taaccggggctcaaa-gccctgaaatcgaaaangccaaaataggaataaggcttgctatt 259 |||||| ||| ||| | |||||||| |||| || |||||||||||||||||||||||| Sbjct: 1562 gaaccggagcttaaaagtgctgaaatccaaaatgctaaaataggaataaggcttgctatt 1503 Query: 260 atnagaaatgtccaaaaaatatcatattcntnaagcagaaacat-antgtactcccatta 318 || ||||||| ||||||||||| |||||| | |||||||||||| | ||||||||||||| Sbjct: 1502 attagaaatgcccaaaaaatattatattcgtgaagcagaaacataaatgtactcccatta 1443 Query: 319 atgtggaataggcggaacttaaattanncaattcaattcagcattgtcaatttatccaga 378 |||||||||||||||||| | ||||| |||||||| |||||||||||||||||| |||| Sbjct: 1442 atgtggaataggcggaac-tgaattagtcaattcaagtcagcattgtcaatttatacaga 1384 Query: 379 acttctctcttttcctcggtgaaacaag 406 | |||||||||||||||||||||||||| Sbjct: 1383 atttctctcttttcctcggtgaaacaag 1356
>emb|AL663002.3|OSJN00199 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0026I12, complete sequence Length = 128574 Score = 375 bits (189), Expect = e-101 Identities = 356/412 (86%), Gaps = 9/412 (2%) Strand = Plus / Minus Query: 1 cgaaantcaangcttcgntcnaaacggctacacccaatacgtcganactgcattgcccaa 60 ||||| | || |||||| | |||||| || |||||||||||||| ||| |||||||||| Sbjct: 81184 cgaaaatgaaagcttcgataaaaacggatatacccaatacgtcgaaact-cattgcccaa 81126 Query: 61 gggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaaacatatnnta 120 ||||| ||| ||| |||||||||||||||||||||| |||| ||||||||||| | || Sbjct: 81125 gggtagagaaagaccgtttccacatcaaaaacaacaa-aaactagcgcaaacatgtaata 81067 Query: 121 gcgnatncggaattggacccaagcccctccc----atgggttctatncccgattcatanc 176 ||| || |||||||| | ||||||||| ||| ||||||||||| ||||||||||| | Sbjct: 81066 gcgtattcggaattgtaaccaagccccccccccccatgggttctatacccgattcataac 81007 Query: 177 taganagcttctctggnccttcactaaccggggctcaaa-gccctgaaatcgaaaangcc 235 |||| ||||||||||| ||||||| |||||| ||| ||| | |||||||| |||| || Sbjct: 81006 tagaaagcttctctggtccttcacaaaccggagcttaaaagtgctgaaatccaaaatgct 80947 Query: 236 aaaataggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcntnaagc 295 |||||||||||||||||||||||||| ||||||| |||||||||||||||||| | |||| Sbjct: 80946 aaaataggaataaggcttgctattattagaaatgcccaaaaaatatcatattcgtgaagc 80887 Query: 296 agaaacat-antgtactcccattaatgtggaataggcggaacttaaattanncaattcaa 354 |||||||| | |||||||||||||||||||||||| ||||| | ||||| |||||||| Sbjct: 80886 agaaacataaatgtactcccattaatgtggaatagttggaac-tgaattagtcaattcaa 80828 Query: 355 ttcagcattgtcaatttatccagaacttctctcttttcctcggtgaaacaag 406 |||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct: 80827 gtcagcattgtcaatttatacagaatttctctcttttcctcggtgaaacaag 80776
>ref|NM_197447.1| Oryza sativa (japonica cultivar-group) NADH dehydrogenase ND3 (OSJNBb0005J14.29), mRNA Length = 363 Score = 305 bits (154), Expect = 6e-80 Identities = 263/303 (86%), Gaps = 2/303 (0%) Strand = Plus / Minus Query: 1 cgaaantcaangcttcgntcnaaacggctacacccaatacgtcganactgcattgcccaa 60 ||||| | || |||||| | |||||| || |||||||||||||| ||| |||||||||| Sbjct: 301 cgaaaatgaaagcttcgataaaaacggatatacccaatacgtcgaaact-cattgcccaa 243 Query: 61 gggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaaacatatnnta 120 ||||| ||| ||| |||||||||||||||||||||| |||| ||||||||||| | || Sbjct: 242 gggtagagaaagaccgtttccacatcaaaaacaacaa-aaactagcgcaaacatgtaata 184 Query: 121 gcgnatncggaattggacccaagcccctcccatgggttctatncccgattcatanctaga 180 ||| || |||||||| | ||||||||| |||||||||||||| ||||||||||| ||||| Sbjct: 183 gcgtattcggaattgtaaccaagccccccccatgggttctatacccgattcataactaga 124 Query: 181 nagcttctctggnccttcactaaccggggctcaaagccctgaaatcgaaaangccaaaat 240 ||||||||||| ||||||| |||||| ||| |||| |||||||| |||| || ||||| Sbjct: 123 aagcttctctggtccttcacgaaccggagctaaaagtgctgaaatccaaaatgctaaaat 64 Query: 241 aggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcntnaagcagaaa 300 ||||||||||||||||||||| ||||||| |||||||||||||||||| | ||||||||| Sbjct: 63 aggaataaggcttgctattattagaaatgcccaaaaaatatcatattcgtgaagcagaaa 4 Query: 301 cat 303 ||| Sbjct: 3 cat 1
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 196 bits (99), Expect = 4e-47 Identities = 185/216 (85%), Gaps = 2/216 (0%) Strand = Plus / Minus Query: 1 cgaaantcaangcttcgntcnaaacggctacacccaatacgtcganactgcattgcccaa 60 ||||| | || |||||| | |||||| || |||||||||||||| ||| |||||||||| Sbjct: 33553271 cgaaaatgaaagcttcgataaaaacggatatacccaatacgtcgaaact-cattgcccaa 33553213 Query: 61 gggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaaacatatnnta 120 ||||| ||| ||| |||||||||||||||||||||| |||| ||||||||||| | || Sbjct: 33553212 gggtagagaaagaccgtttccacatcaaaaacaacaa-aaactagcgcaaacatgtaata 33553154 Query: 121 gcgnatncggaattggacccaagcccctcccatgggttctatncccgattcatanctaga 180 ||| || |||||||| | ||||||||| |||||||||||||| ||||||||||| ||||| Sbjct: 33553153 gcgtattcggaattgtaaccaagccccccccatgggttctatacccgattcataactaga 33553094 Query: 181 nagcttctctggnccttcactaaccggggctcaaag 216 ||||||||||| ||||||| |||||| ||| |||| Sbjct: 33553093 aagcttctctggtccttcacgaaccggagctaaaag 33553058
>dbj|AP003280.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0557A01 Length = 147201 Score = 196 bits (99), Expect = 4e-47 Identities = 185/216 (85%), Gaps = 2/216 (0%) Strand = Plus / Minus Query: 1 cgaaantcaangcttcgntcnaaacggctacacccaatacgtcganactgcattgcccaa 60 ||||| | || |||||| | |||||| || |||||||||||||| ||| |||||||||| Sbjct: 98468 cgaaaatgaaagcttcgataaaaacggatatacccaatacgtcgaaact-cattgcccaa 98410 Query: 61 gggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaaacatatnnta 120 ||||| ||| ||| |||||||||||||||||||||| |||| ||||||||||| | || Sbjct: 98409 gggtagagaaagaccgtttccacatcaaaaacaacaa-aaactagcgcaaacatgtaata 98351 Query: 121 gcgnatncggaattggacccaagcccctcccatgggttctatncccgattcatanctaga 180 ||| || |||||||| | ||||||||| |||||||||||||| ||||||||||| ||||| Sbjct: 98350 gcgtattcggaattgtaaccaagccccccccatgggttctatacccgattcataactaga 98291 Query: 181 nagcttctctggnccttcactaaccggggctcaaag 216 ||||||||||| ||||||| |||||| ||| |||| Sbjct: 98290 aagcttctctggtccttcacgaaccggagctaaaag 98255
>gb|AY582139.1| Panax ginseng chloroplast, complete genome Length = 156318 Score = 180 bits (91), Expect = 3e-42 Identities = 228/276 (82%), Gaps = 2/276 (0%) Strand = Plus / Plus Query: 29 tacacccaatacgtcganactgcattgcccaagggtataganngacggtttccacatcaa 88 |||||| ||||| |||| ||| ||||||||| || || ||| || ||||| ||||||| Sbjct: 52259 tacacctaatacatcgaaact-cattgcccatggataaagaaaaactgtttcaacatcaa 52317 Query: 89 aaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggacccaagcccct 148 ||||||||| |||| || |||||||||| || || || || ||||| | |||||| Sbjct: 52318 aaacaacaa-aaactagagcaaacatataataacggattcgaaattgtaaccaagcattg 52376 Query: 149 cccatgggttctatncccgattcatanctaganagcttctctggnccttcactaaccggg 208 ||||| |||||||| ||||||||||| ||||| || |||||||| |||| |||| |||| Sbjct: 52377 cccattggttctatacccgattcataactagagagtttctctggccctttgctaatcggg 52436 Query: 209 gctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattatnagaaat 268 ||| ||| ||| ||||| |||| ||||||||||||||||| |||| |||||| |||||| Sbjct: 52437 gctaaaaccccggaaatgaaaaatgccaaaataggaataagacttgatattattagaaat 52496 Query: 269 gtccaaaaaatatcatattcntnaagcagaaacata 304 | |||||||||||||||||| | ||||||||||||| Sbjct: 52497 gcccaaaaaatatcatattcgtaaagcagaaacata 52532
>gb|AY936342.1| Evolvulus glomeratus NdhC (ndhC), NdhK (ndhK), and NdhJ (ndhJ) genes, complete cds; chloroplast Length = 1744 Score = 178 bits (90), Expect = 1e-41 Identities = 227/275 (82%), Gaps = 2/275 (0%) Strand = Plus / Minus Query: 29 tacacccaatacgtcganactgcattgcccaagggtataganngacggtttccacatcaa 88 |||||||||||| |||| ||| ||||||||| ||||| ||| || ||||| ||||||| Sbjct: 273 tacacccaatacatcgaaact-cattgcccatgggtaaagaaaaaccgtttcaacatcaa 215 Query: 89 aaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggacccaagcccct 148 ||||||||| |||| || |||||||||| || || || || ||||| | |||||| | Sbjct: 214 aaacaacaa-aaactagagcaaacatataataacggattcgaaattgtaaccaagcatcg 156 Query: 149 cccatgggttctatncccgattcatanctaganagcttctctggnccttcactaaccggg 208 ||||| |||||||| || |||||||| ||||| || |||||||| || | |||| |||| Sbjct: 155 cccattggttctatacctgattcataactagaaagtttctctggccccttgctaatcggg 96 Query: 209 gctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattatnagaaat 268 ||| ||| ||| |||||| |||| | |||||||||||||||||| | |||||| |||||| Sbjct: 95 gctaaaaccccggaaatcaaaaaagtcaaaataggaataaggctggatattattagaaat 36 Query: 269 gtccaaaaaatatcatattcntnaagcagaaacat 303 | |||||||||||||||||| | ||| |||||||| Sbjct: 35 gcccaaaaaatatcatattcgtaaagtagaaacat 1
>emb|AJ428413.1|CFE428413 Calycanthus fertilis var. ferax complete chloroplast genome Length = 153337 Score = 176 bits (89), Expect = 4e-41 Identities = 247/301 (82%), Gaps = 3/301 (0%) Strand = Plus / Plus Query: 29 tacacccaatacgtcganactgcattgcccaagggtataganngacggtttccacatcaa 88 |||||||| ||| |||| ||| ||||||||| || || ||| ||| ||||| ||||||| Sbjct: 51069 tacacccagtacatcgaaact-cattgcccatggataaagaaagaccgtttcaacatcaa 51127 Query: 89 aaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggacccaagcccct 148 ||||||||| |||| || |||||||| | ||||| || |||||||| | |||||| | Sbjct: 51128 aaacaacaa-aaactagagcaaacatgtaatagcggattcggaattgtaaccaagcatcc 51186 Query: 149 cccatgggttctatncccgattcatanctaganagcttctctggnccttcactaaccggg 208 ||||| |||||||| || |||||||| ||||| ||||||||||| ||||||| || |||| Sbjct: 51187 cccattggttctatacctgattcataactagagagcttctctggtccttcacgaatcggg 51246 Query: 209 gctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattatnagaaat 268 ||| ||| || ||||| ||| |||||||||||||| | |||| |||||| |||||| Sbjct: 51247 gctaaaactccggaaattagaaatgccaaaataggaatgacacttgatattattagaaat 51306 Query: 269 gtccaaaaaatatcatattcntnaagcagaaacata-ntgtactcccattaatgtggaat 327 | ||| |||||||||||||| | ||||||||||||| || ||||| || |||||||||| Sbjct: 51307 gcccagaaaatatcatattcgtgaagcagaaacatagatgcactcctatgaatgtggaat 51366 Query: 328 a 328 | Sbjct: 51367 a 51367
>gb|AY936338.1| Jacquemontia tamnifolia NdhC (ndhC), NdhK (ndhK), and NdhJ (ndhJ) genes, complete cds; chloroplast Length = 1706 Score = 165 bits (83), Expect = 1e-37 Identities = 223/272 (81%), Gaps = 2/272 (0%) Strand = Plus / Minus Query: 32 acccaatacgtcganactgcattgcccaagggtataganngacggtttccacatcaaaaa 91 ||||||||| |||| ||| ||||||||| || || ||| || ||||| |||||||||| Sbjct: 270 acccaatacatcgaaact-cattgcccatggataaagaaaaaccgtttcaacatcaaaaa 212 Query: 92 caacaataaacgagcgcaaacatatnntagcgnatncggaattggacccaagcccctccc 151 |||||| ||||||| |||||||||| || || || || ||||| | |||||| | ||| Sbjct: 211 caacaa-aaacgagagcaaacatataataacggattcgaaattgtaaccaagcatcgccc 153 Query: 152 atgggttctatncccgattcatanctaganagcttctctggnccttcactaaccggggct 211 |||||||| || || |||||||| ||||| || |||||||| |||| |||| ||||||| Sbjct: 152 atgggttcgataccggattcataactagaaagtttctctgggcctttgctaatcggggct 93 Query: 212 caaagccctgaaatcgaaaangccaaaataggaataaggcttgctattatnagaaatgtc 271 ||| || |||||| |||| ||||||||||||| ||||| | |||||| ||||||| | Sbjct: 92 aaaacgccggaaatcaaaaaagccaaaataggaaacaggctggatattattagaaatgcc 33 Query: 272 caaaaaatatcatattcntnaagcagaaacat 303 ||||||||||||||||| | ||| |||||||| Sbjct: 32 caaaaaatatcatattcgtaaagtagaaacat 1
>emb|AJ627251.1| Nymphaea alba chloroplast, complete genome Length = 159930 Score = 165 bits (83), Expect = 1e-37 Identities = 210/254 (82%), Gaps = 2/254 (0%) Strand = Plus / Plus Query: 76 gtttccacatcaaaaacaacaataaacgagcgcaaacatatnntagcgnatncggaattg 135 ||||| |||||||||||||||| ||||||| |||||||| | ||||| || || ||||| Sbjct: 53967 gtttcgacatcaaaaacaacaa-aaacgagagcaaacatgtaatagcggattcgaaattg 54025 Query: 136 gacccaagcccctcccatgggttctatncccgattcatanctaganagcttctctggncc 195 | |||||| | || || |||||||| ||||||||||| || || ||||||||||| || Sbjct: 54026 tatccaagcatcccctattggttctatacccgattcataactggagagcttctctggtcc 54085 Query: 196 ttcactaaccggggctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgc 255 |||||||| |||||| ||| ||| ||||| ||| |||||||||||||||| |||| Sbjct: 54086 ttcactaattggggctaaaaccccggaaattagaaatgccaaaataggaataacacttga 54145 Query: 256 tattatnagaaatgtccaaaaaatatcatattcntnaagcagaaacata-ntgtactccc 314 ||| || ||||||| ||| |||||||||||||| | ||||||||||||| |||||||| Sbjct: 54146 tatcattagaaatgcccagaaaatatcatattcgtaaagcagaaacatagatgtactcct 54205 Query: 315 attaatgtggaata 328 || ||||| ||||| Sbjct: 54206 atgaatgtagaata 54219
>gb|AY936340.1| Falkia repens NdhC (ndhC), NdhK (ndhK), and NdhJ (ndhJ) genes, complete cds; chloroplast Length = 1715 Score = 163 bits (82), Expect = 6e-37 Identities = 225/275 (81%), Gaps = 2/275 (0%) Strand = Plus / Minus Query: 29 tacacccaatacgtcganactgcattgcccaagggtataganngacggtttccacatcaa 88 |||||||||||| |||| ||| ||||||||| || || ||| || ||||| ||||||| Sbjct: 273 tacacccaatacatcgaaact-cattgcccatggataaagaaaaaccgtttcaacatcaa 215 Query: 89 aaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggacccaagcccct 148 ||||||||| |||| || |||||||||| || || || | ||||| | |||||| | Sbjct: 214 aaacaacaa-aaactagagcaaacatataataacggattctaaattgtaaccaagcatcg 156 Query: 149 cccatgggttctatncccgattcatanctaganagcttctctggnccttcactaaccggg 208 ||||| |||||||| || |||||||| ||||| || |||||||| |||| ||| |||| Sbjct: 155 cccattggttctatacctgattcataactagaaagtttctctggccctttgttaatcggg 96 Query: 209 gctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattatnagaaat 268 ||| ||| ||| ||||| |||| |||||||||||||||||||| | |||||| |||||| Sbjct: 95 gctaaaaccccggaaataaaaaaagccaaaataggaataaggctggatattattagaaat 36 Query: 269 gtccaaaaaatatcatattcntnaagcagaaacat 303 | |||||||||||||||||| | ||| |||||||| Sbjct: 35 gcccaaaaaatatcatattcgtaaagtagaaacat 1
>gb|AY936336.1| Operculina aequisepala NdhC (ndhC), NdhK (ndhK), and NdhJ (ndhJ) genes, complete cds; chloroplast Length = 1721 Score = 163 bits (82), Expect = 6e-37 Identities = 225/275 (81%), Gaps = 2/275 (0%) Strand = Plus / Minus Query: 29 tacacccaatacgtcganactgcattgcccaagggtataganngacggtttccacatcaa 88 |||||||||||| |||| ||| ||||||||| || || ||| || ||||| ||||||| Sbjct: 273 tacacccaatacatcgaaact-cattgcccatggataaagaaaaaccgtttcaacatcaa 215 Query: 89 aaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggacccaagcccct 148 ||||||||| |||| || |||||||||| || || || || ||||| | |||||| | Sbjct: 214 aaacaacaa-aaactagagcaaacatataataacggattcgaaattgtaaccaagcatcg 156 Query: 149 cccatgggttctatncccgattcatanctaganagcttctctggnccttcactaaccggg 208 ||||| |||||||| || |||||||| ||||| || |||||||| |||| |||| |||| Sbjct: 155 cccataggttctatacctgattcataactagaaagtttctctggccctttgctaatcggg 96 Query: 209 gctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattatnagaaat 268 ||| ||| ||| |||| |||| |||||||||||||||||||| | |||||| |||||| Sbjct: 95 gctaaaaccccggaaagaaaaaaagccaaaataggaataaggctggatattattagaaat 36 Query: 269 gtccaaaaaatatcatattcntnaagcagaaacat 303 | |||||||| ||||||||| | ||| |||||||| Sbjct: 35 gcccaaaaaagatcatattcgtaaagtagaaacat 1
>gb|DQ424856.1| Vitis vinifera cultivar Maxxa chloroplast, complete genome Length = 160928 Score = 151 bits (76), Expect = 2e-33 Identities = 228/281 (81%), Gaps = 2/281 (0%) Strand = Plus / Plus Query: 24 acggctacacccaatacgtcganactgcattgcccaagggtataganngacggtttccac 83 |||| |||||||||||| |||| ||| ||||||||| || || ||| || ||||| || Sbjct: 54231 acggatacacccaatacatcgaaact-cattgcccatggataaagaaaaaccgtttcaac 54289 Query: 84 atcaaaaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggacccaag 143 ||||||||| |||| |||| || |||||||||| || || || || ||||| | ||||| Sbjct: 54290 atcaaaaacgacaa-aaactagagcaaacatataataacggattcgaaattgtaaccaag 54348 Query: 144 cccctcccatgggttctatncccgattcatanctaganagcttctctggnccttcactaa 203 | | ||||| |||||||| ||||||||||| ||||| || |||||||| |||| ||||| Sbjct: 54349 catcgcccattggttctatacccgattcataactagaaagtttctctggtcctttactaa 54408 Query: 204 ccggggctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattatna 263 ||| ||| ||| || ||||| |||| |||||||| ||||||| |||| |||||| | Sbjct: 54409 tcggagctaaaactccggaaataaaaaatgccaaaatgggaataacacttgatattatta 54468 Query: 264 gaaatgtccaaaaaatatcatattcntnaagcagaaacata 304 |||| | ||| |||||||||||||| | ||||||||||||| Sbjct: 54469 gaaaagcccagaaaatatcatattcgtaaagcagaaacata 54509
>emb|AJ506156.2|ATR506156 Amborella trichopoda chloroplast genomic DNA, complete sequence Length = 162686 Score = 151 bits (76), Expect = 2e-33 Identities = 191/232 (82%), Gaps = 1/232 (0%) Strand = Plus / Plus Query: 73 acggtttccacatcaaaaacaacaataaacgagcgcaaacatatnntagcgnatncggaa 132 |||||||| |||||||||||||||| |||| || |||||||| | ||||| || ||||| Sbjct: 54966 acggtttcgacatcaaaaacaacaa-aaactagggcaaacatgtaatagcggattcggaa 55024 Query: 133 ttggacccaagcccctcccatgggttctatncccgattcatanctaganagcttctctgg 192 ||| | |||||| | ||||| |||||||| || |||||||| ||||| | ||| ||||| Sbjct: 55025 ttgtatccaagcatcccccattggttctatacctgattcataactagagaccttttctgg 55084 Query: 193 nccttcactaaccggggctcaaagccctgaaatcgaaaangccaaaataggaataaggct 252 |||| ||||| ||||||| ||| || ||||| ||| |||||||||||||||| || Sbjct: 55085 tccttgactaatcggggctaaaactccagaaattagaaatgccaaaataggaataacact 55144 Query: 253 tgctattatnagaaatgtccaaaaaatatcatattcntnaagcagaaacata 304 || ||| || ||||||| ||| |||||||||||||| | ||||||||||||| Sbjct: 55145 tgatatcattagaaatgcccagaaaatatcatattcgtgaagcagaaacata 55196
>emb|AJ879453.1| Acorus calamus chloroplast, complete genome Length = 153821 Score = 151 bits (76), Expect = 2e-33 Identities = 228/281 (81%), Gaps = 2/281 (0%) Strand = Plus / Plus Query: 24 acggctacacccaatacgtcganactgcattgcccaagggtataganngacggtttccac 83 |||| |||||||||||| |||| ||| ||||||||| || || ||| ||| ||||| || Sbjct: 50709 acggatacacccaatacatcgaaact-cattgcccatggataaagaaagaccgtttcaac 50767 Query: 84 atcaaaaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggacccaag 143 |||||||||||||| |||| | |||||||||| || || || |||||||| ||||||| Sbjct: 50768 atcaaaaacaacaa-aaactaaagcaaacatataatatcggattcggaattgtacccaag 50826 Query: 144 cccctcccatgggttctatncccgattcatanctaganagcttctctggnccttcactaa 203 | | || || |||||||| ||||||||||| ||||| |||||||| || ||||| || Sbjct: 50827 catcccctattggttctatacccgattcataactagaaagcttctcgggtccttccctcg 50886 Query: 204 ccggggctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattatna 263 |||||| ||| || ||||| |||| || ||||||||||||| |||| ||||| | Sbjct: 50887 ttggggctaaaactccggaaattaaaaatgctaaaataggaataacacttgatattagta 50946 Query: 264 gaaatgtccaaaaaatatcatattcntnaagcagaaacata 304 |||||| ||| |||||||||||||| | ||||||||||||| Sbjct: 50947 gaaatgcccagaaaatatcatattcgtgaagcagaaacata 50987
>gb|DQ383815.1| Helianthus annuus cultivar line HA383 chloroplast, complete genome Length = 151104 Score = 149 bits (75), Expect = 9e-33 Identities = 224/276 (81%), Gaps = 2/276 (0%) Strand = Plus / Plus Query: 29 tacacccaatacgtcganactgcattgcccaagggtataganngacggtttccacatcaa 88 |||||| ||||| |||| ||| ||||||||| || || ||| || ||||||||||||| Sbjct: 49606 tacacctaatacatcgaaact-cattgcccatggataaagaaaaaccgtttccacatcaa 49664 Query: 89 aaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggacccaagcccct 148 ||||||||| |||| || |||||||||| ||||| || | ||||| | |||||| | Sbjct: 49665 aaacaacaa-aaacaagagcaaacatataatagcggattctaaattgtaaccaagcgtca 49723 Query: 149 cccatgggttctatncccgattcatanctaganagcttctctggnccttcactaaccggg 208 || || |||||||| || |||||||| ||||| || ||||| || |||| ||| |||| Sbjct: 49724 cctattggttctatacctgattcataactagaaagtttctccggtcctttgctactcggg 49783 Query: 209 gctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattatnagaaat 268 ||| ||| || ||||| |||| |||||||||||||||| |||| |||||| |||||| Sbjct: 49784 gctaaaaatcccgaaatgaaaaataccaaaataggaataagacttgatattatcagaaat 49843 Query: 269 gtccaaaaaatatcatattcntnaagcagaaacata 304 | |||||||||||||||||| | ||||||||||||| Sbjct: 49844 gcccaaaaaatatcatattcgtaaagcagaaacata 49879
>gb|DQ386163.1| Solanum tuberosum cultivar Desiree chloroplast, complete genome Length = 155298 Score = 149 bits (75), Expect = 9e-33 Identities = 224/276 (81%), Gaps = 2/276 (0%) Strand = Plus / Plus Query: 29 tacacccaatacgtcganactgcattgcccaagggtataganngacggtttccacatcaa 88 ||||||||||||||||| ||| ||||||||| || || ||| || ||||| ||||||| Sbjct: 51562 tacacccaatacgtcgaaact-cattgcccatggataaagaaaaaccgtttcaacatcaa 51620 Query: 89 aaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggacccaagcccct 148 ||||||||| |||| || |||||||||| || || || || ||||| | |||||| | Sbjct: 51621 aaacaacaa-aaactagagcaaacatataataacggattcgaaattgtaaccaagcatcg 51679 Query: 149 cccatgggttctatncccgattcatanctaganagcttctctggnccttcactaaccggg 208 ||||| |||||||| ||||| ||||| |||| || ||||| || |||| |||| |||| Sbjct: 51680 cccattggttctatacccgactcataagtagaaagtttctccggccctttgctaatcggg 51739 Query: 209 gctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattatnagaaat 268 ||| | | || ||||| |||| ||||||||||||| |||| ||| |||||| |||||| Sbjct: 51740 gctaacactccggaaatgaaaaatgccaaaataggaacaaggattgatattattagaaat 51799 Query: 269 gtccaaaaaatatcatattcntnaagcagaaacata 304 | |||||||| ||||||||| | ||||||||||||| Sbjct: 51800 gcccaaaaaaaatcatattcgtaaagcagaaacata 51835
>emb|AM087200.2| Lycopersicon esculentum complete chloroplast genome Length = 155460 Score = 149 bits (75), Expect = 9e-33 Identities = 224/276 (81%), Gaps = 2/276 (0%) Strand = Plus / Plus Query: 29 tacacccaatacgtcganactgcattgcccaagggtataganngacggtttccacatcaa 88 ||||||||||||||||| ||| ||||||||| || || ||| || ||||| ||||||| Sbjct: 51481 tacacccaatacgtcgaaact-cattgcccatggataaagaaaaaccgtttcaacatcaa 51539 Query: 89 aaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggacccaagcccct 148 ||||||||| |||| || |||||||||| || || || || ||||| | |||||| | Sbjct: 51540 aaacaacaa-aaactagagcaaacatataataacggattcgaaattgtaaccaagcatcg 51598 Query: 149 cccatgggttctatncccgattcatanctaganagcttctctggnccttcactaaccggg 208 ||||| |||||||| ||||| ||||| |||| || |||||||| |||| |||| |||| Sbjct: 51599 cccattggttctatacccgactcataagtagaaagtttctctggccctttgctaatcggg 51658 Query: 209 gctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattatnagaaat 268 ||| | | || ||||| |||| ||||||||||||| |||| | | |||||| |||||| Sbjct: 51659 gctaacactccggaaatgaaaaatgccaaaataggaacaaggatggatattattagaaat 51718 Query: 269 gtccaaaaaatatcatattcntnaagcagaaacata 304 | |||||||| ||||||||| | ||||||||||||| Sbjct: 51719 gcccaaaaaaaatcatattcgtaaagcagaaacata 51754
>gb|DQ347959.1| Lycopersicon esculentum cultivar LA3023 chloroplast, complete genome Length = 155461 Score = 149 bits (75), Expect = 9e-33 Identities = 224/276 (81%), Gaps = 2/276 (0%) Strand = Plus / Plus Query: 29 tacacccaatacgtcganactgcattgcccaagggtataganngacggtttccacatcaa 88 ||||||||||||||||| ||| ||||||||| || || ||| || ||||| ||||||| Sbjct: 51477 tacacccaatacgtcgaaact-cattgcccatggataaagaaaaaccgtttcaacatcaa 51535 Query: 89 aaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggacccaagcccct 148 ||||||||| |||| || |||||||||| || || || || ||||| | |||||| | Sbjct: 51536 aaacaacaa-aaactagagcaaacatataataacggattcgaaattgtaaccaagcatcg 51594 Query: 149 cccatgggttctatncccgattcatanctaganagcttctctggnccttcactaaccggg 208 ||||| |||||||| ||||| ||||| |||| || |||||||| |||| |||| |||| Sbjct: 51595 cccattggttctatacccgactcataagtagaaagtttctctggccctttgctaatcggg 51654 Query: 209 gctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattatnagaaat 268 ||| | | || ||||| |||| ||||||||||||| |||| | | |||||| |||||| Sbjct: 51655 gctaacactccggaaatgaaaaatgccaaaataggaacaaggatggatattattagaaat 51714 Query: 269 gtccaaaaaatatcatattcntnaagcagaaacata 304 | |||||||| ||||||||| | ||||||||||||| Sbjct: 51715 gcccaaaaaaaatcatattcgtaaagcagaaacata 51750
>gb|DQ317523.1| Glycine max cultivar PI 437654 chloroplast, complete genome Length = 152218 Score = 143 bits (72), Expect = 5e-31 Identities = 206/254 (81%), Gaps = 1/254 (0%) Strand = Plus / Minus Query: 51 cattgcccaagggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaa 110 |||||||||||| || ||| || ||||| |||||||||||||||| ||| ||| |||| Sbjct: 10991 cattgcccaaggataaagaaaaaccgtttcaacatcaaaaacaacaa-aaatgagagcaa 10933 Query: 111 acatatnntagcgnatncggaattggacccaagcccctcccatgggttctatncccgatt 170 |||||| || || || || ||||| | |||||| | || || |||||||| ||||||| Sbjct: 10932 acatataataacggattcgaaattgtaaccaagcatcacctattggttctattcccgatt 10873 Query: 171 catanctaganagcttctctggnccttcactaaccggggctcaaagccctgaaatcgaaa 230 |||| ||||| || |||||||| || | |||| ||||||| ||| || ||||| || Sbjct: 10872 cataactagaaagtttctctggtcccttgctaatcggggctaaaattccagaaattagaa 10813 Query: 231 angccaaaataggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcnt 290 | |||||||||||||||| |||| |||||| ||||||| |||||||||||||||||| | Sbjct: 10812 atgccaaaataggaataaaacttgatattattagaaatgcccaaaaaatatcatattcgt 10753 Query: 291 naagcagaaacata 304 ||| ||||||||| Sbjct: 10752 aaagaagaaacata 10739
>gb|AY780259.1| Eucalyptus globulus subsp. globulus chloroplast, complete genome Length = 160286 Score = 143 bits (72), Expect = 5e-31 Identities = 227/281 (80%), Gaps = 2/281 (0%) Strand = Plus / Plus Query: 24 acggctacacccaatacgtcganactgcattgcccaagggtataganngacggtttccac 83 |||| ||| |||||||| |||| ||| ||||||||| || || ||| || ||||| || Sbjct: 54444 acggatacccccaatacatcgaaact-cattgcccatggataaagaaaaaccgtttcaac 54502 Query: 84 atcaaaaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggacccaag 143 |||||||||||||| |||| || |||||||||| || || || || ||||| | ||||| Sbjct: 54503 atcaaaaacaacaa-aaactagagcaaacatataataacggattcgaaattgtaaccaag 54561 Query: 144 cccctcccatgggttctatncccgattcatanctaganagcttctctggnccttcactaa 203 | | ||||| |||||||| || |||||||| || || || |||||||| |||| |||| Sbjct: 54562 catcgcccattggttctatacctgattcataactcgaaagtttctctggccctttgctaa 54621 Query: 204 ccggggctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattatna 263 ||||||| ||| || ||||| ||| |||||||||||||||| |||| |||||| | Sbjct: 54622 tcggggctaaaattccggaaattmgaaatgccaaaataggaataacacttgatattatta 54681 Query: 264 gaaatgtccaaaaaatatcatattcntnaagcagaaacata 304 |||||| ||| |||||||||||||| | ||||||||||||| Sbjct: 54682 gaaatgcccagaaaatatcatattcgtaaagcagaaacata 54722
>emb|Z00044.2|CHNTXX Nicotiana tabacum chloroplast genome DNA Length = 155943 Score = 141 bits (71), Expect = 2e-30 Identities = 223/276 (80%), Gaps = 2/276 (0%) Strand = Plus / Plus Query: 29 tacacccaatacgtcganactgcattgcccaagggtataganngacggtttccacatcaa 88 ||||||||||||||||| ||| ||||||||| || || ||| || ||||| ||||||| Sbjct: 52401 tacacccaatacgtcgaaact-cattgcccatggataaagaaaaaccgtttcaacatcaa 52459 Query: 89 aaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggacccaagcccct 148 ||||||||| |||| || |||||||||| || || || || ||||| | |||||| | Sbjct: 52460 aaacaacaa-aaactagagcaaacatataataacggattcgaaattgtaaccaagcatcg 52518 Query: 149 cccatgggttctatncccgattcatanctaganagcttctctggnccttcactaaccggg 208 ||||| |||||||| ||||| ||||| |||| || ||||| || |||| |||| |||| Sbjct: 52519 cccattggttctatacccgactcataagtagaaagtttctccggccctttgctaatcggg 52578 Query: 209 gctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattatnagaaat 268 ||| | | || ||||| |||| ||||||||||||| |||| | | |||||| |||||| Sbjct: 52579 gctaacactccggaaattaaaaatgccaaaataggaacaaggatagatattattagaaat 52638 Query: 269 gtccaaaaaatatcatattcntnaagcagaaacata 304 | |||||||| ||||||||| | ||||||||||||| Sbjct: 52639 gcccaaaaaaaatcatattcgtaaagcagaaacata 52674
>gb|AY936344.1| Dinetus truncatus NdhC (ndhC), NdhK (ndhK), and NdhJ (ndhJ) genes, complete cds; chloroplast Length = 1710 Score = 141 bits (71), Expect = 2e-30 Identities = 226/280 (80%), Gaps = 2/280 (0%) Strand = Plus / Minus Query: 24 acggctacacccaatacgtcganactgcattgcccaagggtataganngacggtttccac 83 |||| |||||||||||| |||| ||| ||||||||| || || ||| || ||||| || Sbjct: 278 acggatacacccaatacatcgaaact-cattgcccatggataaagaaaaaccgtttcaac 220 Query: 84 atcaaaaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggacccaag 143 |||||||||||||| | || || |||||||||| || || || | ||||| | ||||| Sbjct: 219 atcaaaaacaacaa-acactagagcaaacatataataacggattctaaattgtaaccaag 161 Query: 144 cccctcccatgggttctatncccgattcatanctaganagcttctctggnccttcactaa 203 | | ||||| |||||||| || |||||||| ||||| || |||||||| || | |||| Sbjct: 160 catcgcccatcggttctatacctgattcataactagaaagtttctctggccccttgctaa 101 Query: 204 ccggggctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattatna 263 ||||||| ||| || |||||| |||| |||||||||||||||||| | | |||||| | Sbjct: 100 gcggggctaaaactccggaaatcaaaaaagccaaaataggaataaggatggatattatta 41 Query: 264 gaaatgtccaaaaaatatcatattcntnaagcagaaacat 303 |||||| |||||||| ||||||||| | ||| |||||||| Sbjct: 40 gaaatgcccaaaaaagatcatattcgtaaagtagaaacat 1
>gb|DQ347958.1| Solanum bulbocastanum cultivar PT29 chloroplast, complete genome Length = 155371 Score = 141 bits (71), Expect = 2e-30 Identities = 223/276 (80%), Gaps = 2/276 (0%) Strand = Plus / Plus Query: 29 tacacccaatacgtcganactgcattgcccaagggtataganngacggtttccacatcaa 88 ||||||||||||||||| ||| ||||||||| || || ||| || ||||| ||||||| Sbjct: 51426 tacacccaatacgtcgaaact-cattgcccatggataaagaaaaaccgtttcaacatcaa 51484 Query: 89 aaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggacccaagcccct 148 ||||||||| |||| || |||||||||| || || || || ||||| | |||||| | Sbjct: 51485 aaacaacaa-aaactagagcaaacatataataacggattcgaaattgtaaccaagcatcg 51543 Query: 149 cccatgggttctatncccgattcatanctaganagcttctctggnccttcactaaccggg 208 ||||| |||||||| ||||| ||||| |||| || ||||| || |||| |||| |||| Sbjct: 51544 cccattggttctatacccgactcataagtagaaagtttctccggccctttgctaatcggg 51603 Query: 209 gctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattatnagaaat 268 ||| | | || ||||| |||| ||||||||||||| |||| | | |||||| |||||| Sbjct: 51604 gctaacactccggaaatgaaaaatgccaaaataggaacaaggatggatattattagaaat 51663 Query: 269 gtccaaaaaatatcatattcntnaagcagaaacata 304 | |||||||| ||||||||| | ||||||||||||| Sbjct: 51664 gcccaaaaaaaatcatattcgtaaagcagaaacata 51699
>dbj|AB237912.1| Nicotiana sylvestris chloroplast DNA, complete sequence Length = 155941 Score = 141 bits (71), Expect = 2e-30 Identities = 223/276 (80%), Gaps = 2/276 (0%) Strand = Plus / Plus Query: 29 tacacccaatacgtcganactgcattgcccaagggtataganngacggtttccacatcaa 88 ||||||||||||||||| ||| ||||||||| || || ||| || ||||| ||||||| Sbjct: 52399 tacacccaatacgtcgaaact-cattgcccatggataaagaaaaaccgtttcaacatcaa 52457 Query: 89 aaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggacccaagcccct 148 ||||||||| |||| || |||||||||| || || || || ||||| | |||||| | Sbjct: 52458 aaacaacaa-aaactagagcaaacatataataacggattcgaaattgtaaccaagcatcg 52516 Query: 149 cccatgggttctatncccgattcatanctaganagcttctctggnccttcactaaccggg 208 ||||| |||||||| ||||| ||||| |||| || ||||| || |||| |||| |||| Sbjct: 52517 cccattggttctatacccgactcataagtagaaagtttctccggccctttgctaatcggg 52576 Query: 209 gctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattatnagaaat 268 ||| | | || ||||| |||| ||||||||||||| |||| | | |||||| |||||| Sbjct: 52577 gctaacactccggaaattaaaaatgccaaaataggaacaaggatagatattattagaaat 52636 Query: 269 gtccaaaaaatatcatattcntnaagcagaaacata 304 | |||||||| ||||||||| | ||||||||||||| Sbjct: 52637 gcccaaaaaaaatcatattcgtaaagcagaaacata 52672
>dbj|AB240139.1| Nicotiana tomentosiformis chloroplast DNA, complete sequence Length = 155745 Score = 141 bits (71), Expect = 2e-30 Identities = 223/276 (80%), Gaps = 2/276 (0%) Strand = Plus / Plus Query: 29 tacacccaatacgtcganactgcattgcccaagggtataganngacggtttccacatcaa 88 ||||||||||||||||| ||| ||||||||| || || ||| || ||||| ||||||| Sbjct: 52349 tacacccaatacgtcgaaact-cattgcccatggataaagaaaaaccgtttcaacatcaa 52407 Query: 89 aaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggacccaagcccct 148 ||||||||| |||| || |||||||||| || || || || ||||| | |||||| | Sbjct: 52408 aaacaacaa-aaactagagcaaacatataataacggattcgaaattgtaaccaagcatcg 52466 Query: 149 cccatgggttctatncccgattcatanctaganagcttctctggnccttcactaaccggg 208 ||||| |||||||| ||||| ||||| |||| || ||||| || |||| |||| |||| Sbjct: 52467 cccattggttctatacccgactcataagtagaaagtttctccggccctttgctaatcggg 52526 Query: 209 gctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattatnagaaat 268 ||| | | || ||||| |||| ||||||||||||| |||| | | |||||| |||||| Sbjct: 52527 gctaacactccggaaattaaaaatgccaaaataggaacaaggatggatattattagaaat 52586 Query: 269 gtccaaaaaatatcatattcntnaagcagaaacata 304 | |||||||| ||||||||| | ||||||||||||| Sbjct: 52587 gcccaaaaaaaatcatattcgtaaagcagaaacata 52622
>gb|DQ383816.1| Lactuca sativa cultivar Salinas chloroplast, complete genome Length = 152772 Score = 137 bits (69), Expect = 3e-29 Identities = 187/229 (81%), Gaps = 1/229 (0%) Strand = Plus / Plus Query: 76 gtttccacatcaaaaacaacaataaacgagcgcaaacatatnntagcgnatncggaattg 135 ||||| |||||||||||||||| |||| || |||||||||| ||||| || | ||||| Sbjct: 50031 gtttcaacatcaaaaacaacaa-aaactagagcaaacatataatagcggattctaaattg 50089 Query: 136 gacccaagcccctcccatgggttctatncccgattcatanctaganagcttctctggncc 195 | |||||| | || || |||||||| ||||||||||| ||||| || ||||| || || Sbjct: 50090 taaccaagcgtcgcctattggttctatacccgattcataactagaaagtttctccggtcc 50149 Query: 196 ttcactaaccggggctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgc 255 || |||| ||| ||| ||| || ||||| |||| |||||||||||||||| |||| Sbjct: 50150 tttgctaatcggagctaaaaatcccgaaatgaaaaataccaaaataggaataagacttga 50209 Query: 256 tattatnagaaatgtccaaaaaatatcatattcntnaagcagaaacata 304 ||| || ||||||| |||||||||||||||||| | ||||||||||||| Sbjct: 50210 tatgattagaaatgcccaaaaaatatcatattcataaagcagaaacata 50258
>gb|AC093544.8| Medicago truncatula chloroplast, complete genome, complete sequence Length = 124033 Score = 137 bits (69), Expect = 3e-29 Identities = 221/274 (80%), Gaps = 2/274 (0%) Strand = Plus / Plus Query: 51 cattgcccaagggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaa 110 ||||||||| ||||| ||| ||| ||||| |||||||||||||||| |||| || |||| Sbjct: 113246 cattgcccatgggtaaagaaagactgtttcaacatcaaaaacaacaa-aaactagagcaa 113304 Query: 111 acatatnntagcgnatncggaattggacccaagcccctcccatgggttctatncccgatt 170 |||||| || || || | ||||| | |||||| | ||||| |||||||| || |||| Sbjct: 113305 acatataataacggatttgaaattgtaaccaagcatcgcccatcggttctatcccagatt 113364 Query: 171 catanctaganagcttctctggnccttcactaaccggggctcaaagccctgaaatcgaaa 230 |||| ||||| || || ||||| |||| |||| || ||| ||| || |||||| || Sbjct: 113365 cataactagaaagtttttctggcccttttctaattggagctaaaattccagaaatcagaa 113424 Query: 231 angccaaaataggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcnt 290 | |||||||||||||||| | | | |||||| |||||||||||||||||||||||||| | Sbjct: 113425 atgccaaaataggaataaagatcgatattattagaaatgtccaaaaaatatcatattcat 113484 Query: 291 naagcagaaacat-antgtactcccattaatgtg 323 ||||| |||||| | |||||||| || |||||| Sbjct: 113485 aaagcaaaaacataaatgtactcctatgaatgtg 113518
>dbj|AP007232.1| Lactuca sativa chloroplast DNA, complete genome Length = 152765 Score = 137 bits (69), Expect = 3e-29 Identities = 187/229 (81%), Gaps = 1/229 (0%) Strand = Plus / Plus Query: 76 gtttccacatcaaaaacaacaataaacgagcgcaaacatatnntagcgnatncggaattg 135 ||||| |||||||||||||||| |||| || |||||||||| ||||| || | ||||| Sbjct: 50030 gtttcaacatcaaaaacaacaa-aaactagagcaaacatataatagcggattctaaattg 50088 Query: 136 gacccaagcccctcccatgggttctatncccgattcatanctaganagcttctctggncc 195 | |||||| | || || |||||||| ||||||||||| ||||| || ||||| || || Sbjct: 50089 taaccaagcgtcgcctattggttctatacccgattcataactagaaagtttctccggtcc 50148 Query: 196 ttcactaaccggggctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgc 255 || |||| ||| ||| ||| || ||||| |||| |||||||||||||||| |||| Sbjct: 50149 tttgctaatcggagctaaaaatcccgaaatgaaaaataccaaaataggaataagacttga 50208 Query: 256 tattatnagaaatgtccaaaaaatatcatattcntnaagcagaaacata 304 ||| || ||||||| |||||||||||||||||| | ||||||||||||| Sbjct: 50209 tatgattagaaatgcccaaaaaatatcatattcataaagcagaaacata 50257
>gb|DQ345959.1| Gossypium hirsutum cultivar coker 310 FR chloroplast, complete genome Length = 160301 Score = 135 bits (68), Expect = 1e-28 Identities = 226/281 (80%), Gaps = 2/281 (0%) Strand = Plus / Plus Query: 24 acggctacacccaatacgtcganactgcattgcccaagggtataganngacggtttccac 83 |||| ||| |||||||| |||| ||| ||||||||| || || ||| || ||||| || Sbjct: 53543 acgggtacccccaatacatcgaaact-cattgcccatggataaagaaaaaccgtttcaac 53601 Query: 84 atcaaaaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggacccaag 143 |||||||||||||| |||| || |||||||||| || || || || ||||| | ||||| Sbjct: 53602 atcaaaaacaacaa-aaactagagcaaacatataataacggattcgaaattgtaaccaag 53660 Query: 144 cccctcccatgggttctatncccgattcatanctaganagcttctctggnccttcactaa 203 | | ||||| |||||||| ||||||||||| ||||| || || ||||| || | |||| Sbjct: 53661 catcgcccattggttctatacccgattcataactagaaagtttttctggaccctttctaa 53720 Query: 204 ccggggctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattatna 263 ||||||| ||| || ||||| ||| ||||||||||||||| |||| |||||| | Sbjct: 53721 tcggggctaaaactccagaaattagaaatgccaaaataggaatagcacttgatattatta 53780 Query: 264 gaaatgtccaaaaaatatcatattcntnaagcagaaacata 304 |||||| ||| |||||||||||||| | ||||||||||||| Sbjct: 53781 gaaatgcccagaaaatatcatattcgtaaagcagaaacata 53821
>emb|AJ316582.1|ABE316582 Atropa belladonna complete chloroplast genome, strain Ab5p(kan) Length = 156687 Score = 133 bits (67), Expect = 5e-28 Identities = 222/276 (80%), Gaps = 2/276 (0%) Strand = Plus / Plus Query: 29 tacacccaatacgtcganactgcattgcccaagggtataganngacggtttccacatcaa 88 ||||||||||||||||| ||| ||||||||| || || ||| || ||||| ||||||| Sbjct: 52035 tacacccaatacgtcgaaact-cattgcccatggataaagaaaaaccgtttcaacatcaa 52093 Query: 89 aaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggacccaagcccct 148 ||||||||| |||| || |||||||||| || || || | ||||| | |||||| | Sbjct: 52094 aaacaacaa-aaactagagcaaacatataataacggattctaaattgtaaccaagcatcg 52152 Query: 149 cccatgggttctatncccgattcatanctaganagcttctctggnccttcactaaccggg 208 ||||| |||||||| ||||| ||||| |||| || ||||| || |||| |||| ||| Sbjct: 52153 cccattggttctatacccgactcataagtagaaagtttctccggccctttgctaattggg 52212 Query: 209 gctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattatnagaaat 268 ||| | | || ||||| |||| ||||||||||||| |||| ||| |||||| |||||| Sbjct: 52213 gctaacactccggaaatgaaaaatgccaaaataggaacaaggattgatattattagaaat 52272 Query: 269 gtccaaaaaatatcatattcntnaagcagaaacata 304 | |||||||| ||||||||| | ||||||||||||| Sbjct: 52273 gcccaaaaaaaatcatattcgtaaagcagaaacata 52308
>gb|DQ231562.1| Solanum tuberosum chloroplast, complete genome Length = 155312 Score = 133 bits (67), Expect = 5e-28 Identities = 222/276 (80%), Gaps = 2/276 (0%) Strand = Plus / Plus Query: 29 tacacccaatacgtcganactgcattgcccaagggtataganngacggtttccacatcaa 88 ||||||||||| ||||| ||| ||||||||| || || ||| || ||||| ||||||| Sbjct: 51568 tacacccaataggtcgaaact-cattgcccatggataaagaaaaaccgtttcaacatcaa 51626 Query: 89 aaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggacccaagcccct 148 ||||||||| |||| | |||||||||| || || || || ||||| | |||||| | Sbjct: 51627 aaacaacaa-aaactacagcaaacatataataacggattcgaaattgtaaccaagcatcg 51685 Query: 149 cccatgggttctatncccgattcatanctaganagcttctctggnccttcactaaccggg 208 ||||| |||||||| ||||| ||||| |||| || ||||| || |||| |||| |||| Sbjct: 51686 cccattggttctatacccgactcataagtagaaagtttctccggccctttgctaatcggg 51745 Query: 209 gctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattatnagaaat 268 ||| | | || ||||| |||| ||||||||||||| |||| ||| |||||| |||||| Sbjct: 51746 gctaacactccggaaatgaaaaatgccaaaataggaagaaggattgatattattagaaat 51805 Query: 269 gtccaaaaaatatcatattcntnaagcagaaacata 304 | |||||||| ||||||||| | ||||||||||||| Sbjct: 51806 gcccaaaaaaaatcatattcgtaaagcagaaacata 51841
>emb|AJ271079.2|OEL271079 Oenothera elata subsp. hookeri chloroplast plastome I, complete sequence Length = 163935 Score = 131 bits (66), Expect = 2e-27 Identities = 187/230 (81%), Gaps = 1/230 (0%) Strand = Plus / Minus Query: 75 ggtttccacatcaaaaacaacaataaacgagcgcaaacatatnntagcgnatncggaatt 134 |||||| |||||||||||||||| |||| | |||||||||| || || || || |||| Sbjct: 14040 ggtttcaacatcaaaaacaacaa-aaactaaagcaaacatataataacgtattcgaaatt 13982 Query: 135 ggacccaagcccctcccatgggttctatncccgattcatanctaganagcttctctggnc 194 | | |||||| | ||||| |||||||| ||||||||||| || || || |||||||| | Sbjct: 13981 gtaaccaagcatcgcccattggttctatacccgattcataactcgaaagtttctctggcc 13922 Query: 195 cttcactaaccggggctcaaagccctgaaatcgaaaangccaaaataggaataaggcttg 254 || ||| ||||||| |||| || ||||| ||| |||||||||||||||| |||| Sbjct: 13921 ctatgctagtcggggctaaaagtccggaaattcgaaatgccaaaataggaataacacttg 13862 Query: 255 ctattatnagaaatgtccaaaaaatatcatattcntnaagcagaaacata 304 |||||| ||||||| ||| |||||||||||||| | ||||||||||||| Sbjct: 13861 atattattagaaatgcccagaaaatatcatattcgtaaagcagaaacata 13812
>dbj|AP002983.1| Lotus japonicus chloroplast DNA, complete genome Length = 150519 Score = 129 bits (65), Expect = 8e-27 Identities = 186/229 (81%), Gaps = 1/229 (0%) Strand = Plus / Minus Query: 76 gtttccacatcaaaaacaacaataaacgagcgcaaacatatnntagcgnatncggaattg 135 ||||| |||||||||||||||| |||| || |||||||||| || || || | ||||| Sbjct: 10925 gtttcaacatcaaaaacaacaa-aaactagagcaaacatataataacggatttgaaattg 10867 Query: 136 gacccaagcccctcccatgggttctatncccgattcatanctaganagcttctctggncc 195 | |||||| ||||||| |||||||| ||||||||||| ||||| || |||||||| || Sbjct: 10866 taaccaagcatctcccattggttctattcccgattcataactagaaagtttctctggccc 10807 Query: 196 ttcactaaccggggctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgc 255 || ||| |||||| ||| || ||||| | ||| |||||||| ||||||| | | | Sbjct: 10806 tttgttaatcggggccaaaaagccagaaattgtaaatgccaaaatcggaataaagatcga 10747 Query: 256 tattatnagaaatgtccaaaaaatatcatattcntnaagcagaaacata 304 |||||| ||||||| |||||||||||||||||| | ||||| ||||||| Sbjct: 10746 tattattagaaatgcccaaaaaatatcatattcataaagcaaaaacata 10698
>emb|AJ970307.1| Cucumis sativus chloroplast complete genome Length = 155293 Score = 121 bits (61), Expect = 2e-24 Identities = 185/229 (80%), Gaps = 1/229 (0%) Strand = Plus / Plus Query: 76 gtttccacatcaaaaacaacaataaacgagcgcaaacatatnntagcgnatncggaattg 135 ||||| |||||||||||||||| |||| || |||||||||| || || || | ||||| Sbjct: 52990 gtttcaacatcaaaaacaacaa-aaactagagcaaacatataataacggattctaaattg 53048 Query: 136 gacccaagcccctcccatgggttctatncccgattcatanctaganagcttctctggncc 195 |||||||| | ||||| |||||||| ||||||||||| || || || |||||||| | Sbjct: 53049 tacccaagcatcgcccattggttctattcccgattcataactcgaaagtttctctggctc 53108 Query: 196 ttcactaaccggggctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgc 255 || |||| |||||| ||| || ||||| ||| |||||||||||||||| |||| Sbjct: 53109 tttgctaagaggggctaaaactccagaaattagaaatgccaaaataggaataacacttga 53168 Query: 256 tattatnagaaatgtccaaaaaatatcatattcntnaagcagaaacata 304 |||||| |||||| ||| |||||||||||||| | ||||||||||||| Sbjct: 53169 tattattagaaatacccagaaaatatcatattcgtaaagcagaaacata 53217
>gb|AC160516.1| Medicago truncatula chromosome 7 BAC clone mth2-66d22, complete sequence Length = 116154 Score = 121 bits (61), Expect = 2e-24 Identities = 219/274 (79%), Gaps = 2/274 (0%) Strand = Plus / Minus Query: 51 cattgcccaagggtataganngacggtttccacatcaaaaacaacaataaacgagcgcaa 110 ||||||||| ||||| ||| ||| ||||| |||||||||||||||| |||| || |||| Sbjct: 83407 cattgcccatgggtaaagaaagactgtttcaacatcaaaaacaacaa-aaactagagcaa 83349 Query: 111 acatatnntagcgnatncggaattggacccaagcccctcccatgggttctatncccgatt 170 |||||| || || || | ||||| | |||||| | ||||| |||||||| | |||| Sbjct: 83348 acatataataacggatttgaaattgtaaccaagcatcgcccatcggttctatcctagatt 83289 Query: 171 catanctaganagcttctctggnccttcactaaccggggctcaaagccctgaaatcgaaa 230 |||| || || || || ||||| |||| |||| || ||| ||| || |||||| || Sbjct: 83288 cataacttgaaagtttttctggcccttttctaattggagctaaaattccagaaatcagaa 83229 Query: 231 angccaaaataggaataaggcttgctattatnagaaatgtccaaaaaatatcatattcnt 290 | |||||||||||||||| | | | |||||| |||||||||||||||||||||||||| | Sbjct: 83228 atgccaaaataggaataaagatcgatattattagaaatgtccaaaaaatatcatattcat 83169 Query: 291 naagcagaaacat-antgtactcccattaatgtg 323 ||||| |||||| | |||||||| || |||||| Sbjct: 83168 aaagcaaaaacataaatgtactcctatgaatgtg 83135
>gb|DQ119058.1| Cucumis sativus cultivar Baekmibaekdadagi plastid, complete genome Length = 155527 Score = 121 bits (61), Expect = 2e-24 Identities = 185/229 (80%), Gaps = 1/229 (0%) Strand = Plus / Plus Query: 76 gtttccacatcaaaaacaacaataaacgagcgcaaacatatnntagcgnatncggaattg 135 ||||| |||||||||||||||| |||| || |||||||||| || || || | ||||| Sbjct: 52964 gtttcaacatcaaaaacaacaa-aaactagagcaaacatataataacggattctaaattg 53022 Query: 136 gacccaagcccctcccatgggttctatncccgattcatanctaganagcttctctggncc 195 |||||||| | ||||| |||||||| ||||||||||| || || || |||||||| | Sbjct: 53023 tacccaagcatcgcccattggttctattcccgattcataactcgaaagtttctctggctc 53082 Query: 196 ttcactaaccggggctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgc 255 || |||| |||||| ||| || ||||| ||| |||||||||||||||| |||| Sbjct: 53083 tttgctaagaggggctaaaactccagaaattagaaatgccaaaataggaataacacttga 53142 Query: 256 tattatnagaaatgtccaaaaaatatcatattcntnaagcagaaacata 304 |||||| |||||| ||| |||||||||||||| | ||||||||||||| Sbjct: 53143 tattattagaaatacccagaaaatatcatattcgtaaagcagaaacata 53191
>gb|U27653.1|LLU27653 Lupinus luteus NADH-plastoquinone oxidoreductase (ndhC) gene, chloroplast gene encoding chloroplast protein, complete cds Length = 363 Score = 117 bits (59), Expect = 3e-23 Identities = 223/280 (79%), Gaps = 2/280 (0%) Strand = Plus / Minus Query: 24 acggctacacccaatacgtcganactgcattgcccaagggtataganngacggtttccac 83 |||| ||| |||||||| |||| ||| ||||||||| || || ||| || ||||| || Sbjct: 278 acggatacccccaatacatcgaaact-cattgcccatggataaagaaaaaccgtttcaac 220 Query: 84 atcaaaaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggacccaag 143 |||||||||||||| |||| || |||||||||| || || || | ||||| | ||||| Sbjct: 219 atcaaaaacaacaa-aaactagagcaaacatataataacggattctaaattgtaaccaag 161 Query: 144 cccctcccatgggttctatncccgattcatanctaganagcttctctggnccttcactaa 203 | | ||||| |||||||| ||||||||||| || || || |||||||| || | |||| Sbjct: 160 catcgcccattggttctattcccgattcataactcgagagtttctctggtcccttgctaa 101 Query: 204 ccggggctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattatna 263 |||||| ||| || ||||| |||| || ||||| ||||||||||| | ||||| | Sbjct: 100 ttggggctaaaattccagaaattaaaaatgctaaaatcggaataaggctcgagattatta 41 Query: 264 gaaatgtccaaaaaatatcatattcntnaagcagaaacat 303 |||||| |||||||||||||||||| | ||||| |||||| Sbjct: 40 gaaatgcccaaaaaatatcatattcgtaaagcaaaaacat 1
>emb|CT010572.8| M.truncatula DNA sequence from clone MTH2-161L21 on chromosome 3, complete sequence Length = 121331 Score = 105 bits (53), Expect = 1e-19 Identities = 144/176 (81%), Gaps = 1/176 (0%) Strand = Plus / Minus Query: 149 cccatgggttctatncccgattcatanctaganagcttctctggnccttcactaaccggg 208 ||||| |||||||| || |||||||| ||||| || || ||||| |||| |||| || Sbjct: 101127 cccatcggttctatcccagattcataactagaaagtttttctggcccttttctaattgga 101068 Query: 209 gctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattatnagaaat 268 ||| ||| || |||||| ||| |||||||||||||||| | | | |||||| |||||| Sbjct: 101067 gctaaaattccagaaatcagaaatgccaaaataggaataaagatcgatattattagaaat 101008 Query: 269 gtccaaaaaatatcatattcntnaagcagaaacat-antgtactcccattaatgtg 323 |||||||||||||||||||| | ||||| |||||| | |||||||| || |||||| Sbjct: 101007 gtccaaaaaatatcatattcataaagcaaaaacataaatgtactcctatgaatgtg 100952
>emb|AJ400848.1|SOL400848 Spinacia oleracea complete chloroplast genome Length = 150725 Score = 103 bits (52), Expect = 5e-19 Identities = 222/281 (79%), Gaps = 2/281 (0%) Strand = Plus / Plus Query: 24 acggctacacccaatacgtcganactgcattgcccaagggtataganngacggtttccac 83 |||| ||||||||||| |||| ||| ||||||||| || || ||| || ||||| || Sbjct: 49067 acggatacacccaatatatcgaaact-cattgcccatggataaagaaaaaccgtttcaac 49125 Query: 84 atcaaaaacaacaataaacgagcgcaaacatatnntagcgnatncggaattggacccaag 143 |||||||||||||| |||| || |||||||||| || || || || ||||| | ||||| Sbjct: 49126 atcaaaaacaacaa-aaactagagcaaacatataataacggattcgaaattgtaaccaag 49184 Query: 144 cccctcccatgggttctatncccgattcatanctaganagcttctctggnccttcactaa 203 | | ||||| |||||||| |||||||| || ||||| || ||||| || |||| |||| Sbjct: 49185 catcccccataggttctatacccgattcgtaactagaaagtttctcgggtcctttgctaa 49244 Query: 204 ccggggctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgctattatna 263 ||| ||| ||| || |||| ||| || ||||||||||||| |||| |||||| | Sbjct: 49245 tcggtgctaaaattccggaaaatagaaatgctaaaataggaataacacttgatattatta 49304 Query: 264 gaaatgtccaaaaaatatcatattcntnaagcagaaacata 304 ||||| ||| |||||||||||||| | ||| ||||||||| Sbjct: 49305 aaaatgcccagaaaatatcatattcataaagtagaaacata 49345
>emb|CT863710.2| Medicago truncatula chromosome 5 clone mth2-52h19, COMPLETE SEQUENCE Length = 118754 Score = 99.6 bits (50), Expect = 7e-18 Identities = 138/169 (81%), Gaps = 1/169 (0%) Strand = Plus / Minus Query: 156 gttctatncccgattcatanctaganagcttctctggnccttcactaaccggggctcaaa 215 ||||||| || |||||||| ||||| || || ||||| |||| |||| || ||| ||| Sbjct: 114622 gttctatcccagattcataactagaaagtttttctggcccttttctaattggagctaaaa 114563 Query: 216 gccctgaaatcgaaaangccaaaataggaataaggcttgctattatnagaaatgtccaaa 275 || |||||| ||| |||||||||||||||| | | | |||||| ||||||||||||| Sbjct: 114562 ttccagaaatcagaaatgccaaaataggaataaagatcgatattattagaaatgtccaaa 114503 Query: 276 aaatatcatattcntnaagcagaaacat-antgtactcccattaatgtg 323 ||||||||||||| | ||||| |||||| | |||||||| || |||||| Sbjct: 114502 aaatatcatattcataaagcaaaaacataaatgtactcctatgaatgtg 114454
>gb|DQ490953.1| Zea mays subsp. mays genotype CMS-T mitochondrion, complete genome Length = 535825 Score = 79.8 bits (40), Expect = 7e-12 Identities = 43/44 (97%) Strand = Plus / Plus Query: 368 atttatccagaacttctctcttttcctcggtgaaacaagaatct 411 |||| ||||||||||||||||||||||||||||||||||||||| Sbjct: 486770 atttctccagaacttctctcttttcctcggtgaaacaagaatct 486813
>gb|M12704.1|MZECPPS2G Maize chloroplast psbG gene encoding PSII-G protein, complete cds Length = 1027 Score = 79.8 bits (40), Expect = 7e-12 Identities = 69/77 (89%), Gaps = 2/77 (2%) Strand = Plus / Minus Query: 22 aaacggctacacccaatacgtc-ganactgcattgcccaagggtataganngacggtttc 80 |||||| ||||||||||||||| || ||| ||||||||||||||| ||| ||| ||||| Sbjct: 84 aaacggatacacccaatacgtcagaaact-cattgcccaagggtagagaaagactgtttc 26 Query: 81 cacatcaaaaacaacaa 97 ||||||||||||||||| Sbjct: 25 cacatcaaaaacaacaa 9
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 75.8 bits (38), Expect = 1e-10 Identities = 49/54 (90%) Strand = Plus / Minus Query: 154 gggttctatncccgattcatanctaganagcttctctggnccttcactaaccgg 207 ||||||||| ||||||||||| ||||| ||||||||||| ||||||| |||||| Sbjct: 35298991 gggttctatacccgattcataactagaaagcttctctggtccttcacgaaccgg 35298938
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 75.8 bits (38), Expect = 1e-10 Identities = 49/54 (90%) Strand = Plus / Minus Query: 154 gggttctatncccgattcatanctaganagcttctctggnccttcactaaccgg 207 ||||||||| ||||||||||| ||||| ||||||||||| ||||||| |||||| Sbjct: 35389063 gggttctatacccgattcataactagaaagcttctctggtccttcacgaaccgg 35389010
>gb|AC099324.5| Oryza sativa chromosome 3 BAC OSJNBb0043P23 genomic sequence, complete sequence Length = 116443 Score = 75.8 bits (38), Expect = 1e-10 Identities = 49/54 (90%) Strand = Plus / Plus Query: 154 gggttctatncccgattcatanctaganagcttctctggnccttcactaaccgg 207 ||||||||| ||||||||||| ||||| ||||||||||| ||||||| |||||| Sbjct: 69463 gggttctatacccgattcataactagaaagcttctctggtccttcacgaaccgg 69516
>gb|DQ231548.1| Brassica rapa subsp. pekinensis chloroplast sequence Length = 153482 Score = 71.9 bits (36), Expect = 2e-09 Identities = 181/232 (78%), Gaps = 1/232 (0%) Strand = Plus / Plus Query: 73 acggtttccacatcaaaaacaacaataaacgagcgcaaacatatnntagcgnatncggaa 132 |||||||| |||||||||||||||| |||| || |||||||||| || || || | || Sbjct: 49196 acggtttcaacatcaaaaacaacaa-aaactagagcaaacatataataacggattctaaa 49254 Query: 133 ttggacccaagcccctcccatgggttctatncccgattcatanctaganagcttctctgg 192 ||| | |||||| | || || |||||||| || |||||||| ||||| || ||||| || Sbjct: 49255 ttgtaaccaagcatccccgatcggttctatacctgattcataactagaaagtttctccgg 49314 Query: 193 nccttcactaaccggggctcaaagccctgaaatcgaaaangccaaaataggaataaggct 252 || | ||| || | | ||| ||| ||||| ||| ||||||| ||||||| || Sbjct: 49315 ccccttcgtaattggagataaaaccccggaaattagaaatgccaaaacaggaatagcact 49374 Query: 253 tgctattatnagaaatgtccaaaaaatatcatattcntnaagcagaaacata 304 || |||||| | ||||| ||| |||||||||||||| | ||||||||||||| Sbjct: 49375 tgatattattaaaaatgcccagaaaatatcatattcgtaaagcagaaacata 49426
>dbj|AP000423.1| Arabidopsis thaliana chloroplast genomic DNA, complete sequence, strain:Columbia Length = 154478 Score = 58.0 bits (29), Expect = 3e-05 Identities = 177/229 (77%), Gaps = 1/229 (0%) Strand = Plus / Plus Query: 76 gtttccacatcaaaaacaacaataaacgagcgcaaacatatnntagcgnatncggaattg 135 ||||| |||||||||||||||| |||| || |||||||||| || || || | ||||| Sbjct: 50137 gtttcaacatcaaaaacaacaa-aaactagagcaaacatataataacggattctaaattg 50195 Query: 136 gacccaagcccctcccatgggttctatncccgattcatanctaganagcttctctggncc 195 | |||||| | || || |||||||| || |||||||| ||||| || ||||| || || Sbjct: 50196 taaccaagcatccccgatcggttctatacctgattcataactagaaagtttctccggccc 50255 Query: 196 ttcactaaccggggctcaaagccctgaaatcgaaaangccaaaataggaataaggcttgc 255 | |||| || | | ||| || ||||| ||| ||||||| ||||||| |||| Sbjct: 50256 cttcctaattggagataaaactccggaaattagaaatgccaaaacaggaatagcacttga 50315 Query: 256 tattatnagaaatgtccaaaaaatatcatattcntnaagcagaaacata 304 ||||| | ||||| ||| |||||||||||||| | ||||||||||||| Sbjct: 50316 tattagtaaaaatgcccagaaaatatcatattcgtaaagcagaaacata 50364
>gb|U72654.1|EGU72654 Eustoma grandiflorum flavonoid 3'5'-hydroxylase (F3'5'H) mRNA, complete cds Length = 2124 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/48 (87%) Strand = Plus / Minus Query: 256 tattatnagaaatgtccaaaaaatatcatattcntnaagcagaaacat 303 |||||| |||||||||||||||| |||||||| | || ||||||||| Sbjct: 2032 tattattagaaatgtccaaaaaaaatcatatttgtaaatcagaaacat 1985
>dbj|D14589.1| Eustoma russellianum mRNA for flavonoid 3',5'-hydroxylase, complete cds Length = 2174 Score = 54.0 bits (27), Expect = 4e-04 Identities = 42/48 (87%) Strand = Plus / Minus Query: 256 tattatnagaaatgtccaaaaaatatcatattcntnaagcagaaacat 303 |||||| |||||||||||||||| |||||||| | || ||||||||| Sbjct: 2029 tattattagaaatgtccaaaaaaaatcatatttgtaaatcagaaacat 1982 Score = 46.1 bits (23), Expect = 0.095 Identities = 37/43 (86%) Strand = Plus / Minus Query: 155 ggttctatncccgattcatanctaganagcttctctggncctt 197 |||||||| ||||||||||| ||||| || || ||||| |||| Sbjct: 2130 ggttctatccccgattcataactagacagtttttctggtcctt 2088
>gb|AY660566.1| Huperzia lucidula chloroplast, complete genome Length = 154373 Score = 50.1 bits (25), Expect = 0.006 Identities = 56/68 (82%) Strand = Plus / Minus Query: 107 gcaaacatatnntagcgnatncggaattggacccaagcccctcccatgggttctatnccc 166 |||||||||| || || || ||||||||| |||||| |||| ||||||||||| || Sbjct: 37855 gcaaacatataataacgaatctggaattggatccaagcgtctccaatgggttctatacct 37796 Query: 167 gattcata 174 |||||||| Sbjct: 37795 gattcata 37788
>gb|AC155886.2| Medicago truncatula chromosome 7 BAC clone mth2-173o24, complete sequence Length = 119696 Score = 50.1 bits (25), Expect = 0.006 Identities = 50/59 (84%) Strand = Plus / Minus Query: 229 aaangccaaaataggaataaggcttgctattatnagaaatgtccaaaaaatatcatatt 287 ||| |||||||||| ||||| ||| |||||| |||||| ||||||||||||||||| Sbjct: 37643 aaatgccaaaatagcaataacaattgatattattagaaatacccaaaaaatatcatatt 37585
>emb|AJ884786.1| Gigaspora margarita transposon GmarRT1-like sequence, clone GmarRT1-d Length = 769 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 366 caatttatccagaacttctct 386 ||||||||||||||||||||| Sbjct: 521 caatttatccagaacttctct 541
>emb|AJ884784.1| Gigaspora margarita transposon GmarRT1-like sequence, clone GmarRT1b Length = 752 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 366 caatttatccagaacttctct 386 ||||||||||||||||||||| Sbjct: 521 caatttatccagaacttctct 541
>emb|BX908805.1| Human DNA sequence from clone RP11-526F14 on chromosome 1 Contains part of the DPYD gene for dihydropyrimidine dehydrogenase and the 3' end of a novel gene, complete sequence Length = 59492 Score = 42.1 bits (21), Expect = 1.5 Identities = 24/25 (96%) Strand = Plus / Minus Query: 367 aatttatccagaacttctctctttt 391 |||||||||||||||||||| |||| Sbjct: 51481 aatttatccagaacttctctttttt 51457
>emb|AL137845.9| Human DNA sequence from clone RP5-961K14 on chromosome X Contains a MYST histone acetyltransferase 2 (MYST2) pseudogene, a zinc finger protein 265 (ZNF265) pseudogene and a CpG island, complete sequence Length = 116457 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 tgcattgcccaagggtataga 69 ||||||||||||||||||||| Sbjct: 35558 tgcattgcccaagggtataga 35578
>gb|AC158979.2| Mus musculus BAC clone RP23-218C24 from chromosome 14, complete sequence Length = 216848 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 cacatcaaaaacaacaataaa 101 ||||||||||||||||||||| Sbjct: 169787 cacatcaaaaacaacaataaa 169807
>gb|AF332862.1|AF332859S2 Mus musculus diadenosine triphosphate hydrolase (Fhit) gene, intron 5, partial sequence Length = 166617 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 81 cacatcaaaaacaacaataaa 101 ||||||||||||||||||||| Sbjct: 69435 cacatcaaaaacaacaataaa 69455
>gb|AE014299.1| Shewanella oneidensis MR-1, complete genome Length = 4969803 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Plus Query: 77 tttccacatcaaaaacaacaa 97 ||||||||||||||||||||| Sbjct: 4865735 tttccacatcaaaaacaacaa 4865755
>gb|AE017126.1| Prochlorococcus marinus subsp. marinus str. CCMP1375 complete genome Length = 1751080 Score = 42.1 bits (21), Expect = 1.5 Identities = 32/36 (88%) Strand = Plus / Plus Query: 139 ccaagcccctcccatgggttctatncccgattcata 174 |||||||||||| |||||||| || || |||||||| Sbjct: 316778 ccaagcccctccaatgggttccatcccagattcata 316813
>emb|AL513424.3|HS109M15 Homo sapiens chromosome 9 BAC RP11-109M15, complete sequence Length = 184365 Score = 42.1 bits (21), Expect = 1.5 Identities = 21/21 (100%) Strand = Plus / Minus Query: 354 attcagcattgtcaatttatc 374 ||||||||||||||||||||| Sbjct: 126091 attcagcattgtcaatttatc 126071
>gb|AC147648.4| Homo sapiens BAC clone RP11-1413M17 from UL, complete sequence Length = 188992 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 265 aaatgtccaaaaaatatcatattc 288 |||||||||||||||||| ||||| Sbjct: 181830 aaatgtccaaaaaatatcttattc 181807
>gb|AC183300.4| Pan troglodytes BAC clone CH251-263P14 from chromosome 4, complete sequence Length = 171121 Score = 40.1 bits (20), Expect = 5.9 Identities = 24/26 (92%) Strand = Plus / Plus Query: 334 aacttaaattanncaattcaattcag 359 ||||||||||| ||||||||||||| Sbjct: 102082 aacttaaattatacaattcaattcag 102107
>gb|AC145613.2| Homo sapiens BAC clone RP11-1266H24 from UL, complete sequence Length = 178925 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 265 aaatgtccaaaaaatatcatattc 288 |||||||||||||||||| ||||| Sbjct: 159027 aaatgtccaaaaaatatcttattc 159004
>gb|AC145616.2| Homo sapiens BAC clone RP11-1172A19 from UL, complete sequence Length = 172810 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 265 aaatgtccaaaaaatatcatattc 288 |||||||||||||||||| ||||| Sbjct: 19997 aaatgtccaaaaaatatcttattc 20020
>gb|AC145547.3| Homo sapiens BAC clone RP11-1437O6 from UL, complete sequence Length = 185637 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 265 aaatgtccaaaaaatatcatattc 288 |||||||||||||||||| ||||| Sbjct: 92547 aaatgtccaaaaaatatcttattc 92570
>gb|AC144916.3| Homo sapiens BAC clone RP11-15L7 from UL, complete sequence Length = 158759 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 265 aaatgtccaaaaaatatcatattc 288 |||||||||||||||||| ||||| Sbjct: 127308 aaatgtccaaaaaatatcttattc 127331
>gb|AC087428.3| Homo sapiens chromosome 3 clone RP11-18I13 map 3p, complete sequence Length = 149633 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 265 aaatgtccaaaaaatatcatattc 288 |||||||||||||||||| ||||| Sbjct: 130846 aaatgtccaaaaaatatcttattc 130823
>emb|CR381572.5| Human DNA sequence from clone bP-2168N6 on chromosome 21, complete sequence Length = 184355 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 265 aaatgtccaaaaaatatcatattc 288 |||||||||||||||||| ||||| Sbjct: 126224 aaatgtccaaaaaatatcttattc 126247
>emb|BX546448.4| Human DNA sequence from clone RP11-509J10 on chromosome 22, complete sequence Length = 172149 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 265 aaatgtccaaaaaatatcatattc 288 |||||||||||||||||| ||||| Sbjct: 56533 aaatgtccaaaaaatatcttattc 56510
>emb|BX927277.6| Zebrafish DNA sequence from clone CH211-269M17 in linkage group 10, complete sequence Length = 63818 Score = 40.1 bits (20), Expect = 5.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 85 tcaaaaacaacaataaacgagcgcaaac 112 ||||||||||||||||| |||| ||||| Sbjct: 16751 tcaaaaacaacaataaaagagctcaaac 16724
>gb|AC087431.3| Homo sapiens chromosome 3 clone RP11-775C23 map 3p, complete sequence Length = 196745 Score = 40.1 bits (20), Expect = 5.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 265 aaatgtccaaaaaatatcatattc 288 |||||||||||||||||| ||||| Sbjct: 13043 aaatgtccaaaaaatatcttattc 13020 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,040,124 Number of Sequences: 3902068 Number of extensions: 3040124 Number of successful extensions: 58556 Number of sequences better than 10.0: 101 Number of HSP's better than 10.0 without gapping: 107 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 57938 Number of HSP's gapped (non-prelim): 393 length of query: 438 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 416 effective length of database: 17,147,199,772 effective search space: 7133235105152 effective search space used: 7133235105152 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
