>HUNB_MUSDO (Q01778) Protein hunchback|
          Length = 817

 Score = 30.4 bits (67), Expect = 2.7
 Identities = 14/47 (29%), Positives = 24/47 (51%)
 Frame = -1

Query: 443 YKSNHHSLMDXRTRRSSCTGNRTHRSSHMGSSRTRHSHMGSRIHHLQ 303
           +   H S+M  + + S  T    H ++H+ +   +H+H G   HHLQ
Sbjct: 60  HPQQHSSMMASQPQHSPLT----HSANHLENYLKQHAHNGGGAHHLQ 102

>PPIL4_USTMA (P0C196) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)|
           (PPIase) (Rotamase)
          Length = 551

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 19/68 (27%), Positives = 27/68 (39%)
 Frame = -1

Query: 443 YKSNHHSLMDXRTRRSSCTGNRTHRSSHMGSSRTRHSHMGSRIHHLQQHSPLIHLRRTPE 264
           Y+++ H+  D  TRR   +     R     S R+RH     R     +     H RRT +
Sbjct: 476 YEAHSHTRHDEHTRRHDSSSTAARRDEDRRSERSRHDRDRDRDRDRDRDREREHRRRTED 535

Query: 263 LIHRGHID 240
              R H D
Sbjct: 536 --RRRHDD 541

>VIT2_CHICK (P02845) Vitellogenin-2 precursor (Vitellogenin II) (Major|
            vitellogenin) [Contains: Lipovitellin-1 (Lipovitellin I)
            (LVI); Phosvitin (PV); Lipovitellin-2 (Lipovitellin II)
            (LVII); YGP40]
          Length = 1850

 Score = 30.0 bits (66), Expect = 3.6
 Identities = 19/80 (23%), Positives = 32/80 (40%)
 Frame = -1

Query: 479  SSAAVPAPGMSSYKSNHHSLMDXRTRRSSCTGNRTHRSSHMGSSRTRHSHMGSRIHHLQQ 300
            SS++  +   SS   +  S     + +SS   + +H S H+  S +  S   S  HH  +
Sbjct: 1239 SSSSSSSSSSSSSSKSSSSRSSSSSSKSSSHHSHSHHSGHLNGSSSSSSSSRSVSHHSHE 1298

Query: 299  HSPLIHLRRTPELIHRGHID 240
            H             H GH++
Sbjct: 1299 H-------------HSGHLE 1305

>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit)
          Length = 699

 Score = 29.6 bits (65), Expect = 4.7
 Identities = 11/14 (78%), Positives = 11/14 (78%)
 Frame = -2

Query: 484 PPPQQPYPHQACPP 443
           PPPQQP PHQ  PP
Sbjct: 75  PPPQQPPPHQQPPP 88

>SFR16_HUMAN (Q8N2M8) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2)
          Length = 659

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 20/55 (36%), Positives = 26/55 (47%)
 Frame = -1

Query: 455 GMSSYKSNHHSLMDXRTRRSSCTGNRTHRSSHMGSSRTRHSHMGSRIHHLQQHSP 291
           G   Y+S  H+    R+R  S + +R+ R S   S   RHS  GSR  H    SP
Sbjct: 390 GGGYYRSGRHAR--SRSRSWSRSRSRSRRYSRSRSRGRRHSGGGSRDGHRYSRSP 442

>TRUB_XANCP (Q8P7U9) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 308

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 126 CLSYLTDLQ*AWCDPFETTQRPELIIIYAATSVTEAG 236
           C +++  L+  W +PF T   PE+I + A T++ E+G
Sbjct: 193 CGAHIAALRRVWVEPFRT---PEMITLEALTALVESG 226

>TRUB_XANC8 (Q4UWA0) tRNA pseudouridine synthase B (EC 5.4.99.-) (tRNA|
           pseudouridine 55 synthase) (Psi55 synthase)
           (tRNA-uridine isomerase) (tRNA pseudouridylate synthase)
          Length = 308

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 13/37 (35%), Positives = 23/37 (62%)
 Frame = +3

Query: 126 CLSYLTDLQ*AWCDPFETTQRPELIIIYAATSVTEAG 236
           C +++  L+  W +PF T   PE+I + A T++ E+G
Sbjct: 193 CGAHIAALRRVWVEPFRT---PEMITLEALTALVESG 226

>DLX2_MOUSE (P40764) Homeobox protein DLX-2 (Homeobox protein TES-1)|
          Length = 332

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 17/51 (33%), Positives = 26/51 (50%)
 Frame = -1

Query: 398 SSCTGNRTHRSSHMGSSRTRHSHMGSRIHHLQQHSPLIHLRRTPELIHRGH 246
           SS +   +  S+ +G+    H   GS   HLQ  +PL+H  +TP+  H  H
Sbjct: 266 SSGSSPSSAASAFLGNYPWYHQASGSA-SHLQATAPLLHPSQTPQAHHHHH 315

>SFR16_MOUSE (Q8CFC7) Splicing factor, arginine/serine-rich 16 (Suppressor of|
           white-apricot homolog 2) (Clk4-associating SR-related
           protein)
          Length = 653

 Score = 29.3 bits (64), Expect = 6.1
 Identities = 19/51 (37%), Positives = 25/51 (49%)
 Frame = -1

Query: 443 YKSNHHSLMDXRTRRSSCTGNRTHRSSHMGSSRTRHSHMGSRIHHLQQHSP 291
           Y+S  H+    R+R  S + +R+ R S   S   RHS  GSR  H    SP
Sbjct: 388 YRSGRHAR--SRSRSWSRSRSRSRRYSRSRSRGRRHSDGGSRDGHRYSRSP 436

>TRA2A_HUMAN (Q13595) Transformer-2 protein homolog (TRA-2 alpha)|
          Length = 282

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 3/62 (4%)
 Frame = -1

Query: 449 SSYKSNHHSLMDXRTRRSS---CTGNRTHRSSHMGSSRTRHSHMGSRIHHLQQHSPLIHL 279
           S   S   S    R+RR S    T +R+H  SH   SR+R      R    + HSP+ + 
Sbjct: 46  SESHSRSRSKSRSRSRRHSHRRYTRSRSHSHSHRRRSRSRSYTPEYRRRRSRSHSPMSNR 105

Query: 278 RR 273
           RR
Sbjct: 106 RR 107

>GDA3_WHEAT (P04723) Alpha/beta-gliadin A-III precursor (Prolamin)|
          Length = 282

 Score = 28.9 bits (63), Expect = 7.9
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 481 PPQQPYPHQACPPTSQ 434
           PPQQPYPHQ   P+ Q
Sbjct: 59  PPQQPYPHQQPFPSQQ 74


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,395,667
Number of Sequences: 219361
Number of extensions: 872757
Number of successful extensions: 3593
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3565
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3523384522
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)