Clone Information

BLAST Search Result

Clone Name	rbasd27n01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_475664.1\| Oryza sativa (japonica cultivar-group), predic...	161	4e-36
2	gb\|AC130601.2\| Oryza sativa (japonica cultivar-group) chromosome...	161	4e-36
3	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	161	4e-36
4	gb\|AY108327.1\| Zea mays PCO144502 mRNA sequence	94	7e-16
5	emb\|BX571983.11\| Zebrafish DNA sequence from clone DKEY-18M7 in ...	44	0.61
6	emb\|CR550307.8\| Zebrafish DNA sequence from clone DKEY-174E10 in...	44	0.61
7	gb\|AC101689.12\| Mus musculus chromosome 1, clone RP23-217C21, co...	42	2.4
8	gb\|AC115728.11\| Mus musculus chromosome 5, clone RP23-31J24, com...	42	2.4
9	gb\|AC124993.19\| Mus musculus chromosome 15, clone RP23-150J21, c...	42	2.4
10	gb\|AC133504.2\| Mus musculus BAC clone RP24-174N6 from chromosome...	42	2.4
11	gb\|AC078985.14\| Homo sapiens 3q BAC RP11-82C9 (Roswell Park Canc...	42	2.4
12	gb\|AC163028.5\| Mus musculus chromosome 1, clone RP23-393I22, com...	42	2.4
13	gb\|AC155311.2\| Mus musculus BAC clone RP23-407F7 from chromosome...	42	2.4
14	gb\|AC107052.4\| Homo sapiens BAC clone RP11-346A19 from 2, comple...	42	2.4
15	dbj\|AK193719.1\| Mus musculus cDNA, clone:Y1G0113C17, strand:minu...	42	2.4
16	gb\|AE016822.1\| Leifsonia xyli subsp. xyli str. CTCB07, complete ...	40	9.5
17	gb\|AC150912.3\| Pan troglodytes BAC clone CH251-18B3 from chromos...	40	9.5
18	gb\|AE017180.1\| Geobacter sulfurreducens PCA, complete genome	40	9.5
19	ref\|NM_033322.2\| Mus musculus leucine zipper transcription facto...	40	9.5
20	gb\|AC145992.2\| Pan troglodytes BAC clone RP43-172K3 from 7, comp...	40	9.5
21	gb\|AC165425.2\| Mus musculus BAC clone RP23-252G18 from chromosom...	40	9.5
22	gb\|AC148932.3\| Pan troglodytes BAC clone CH251-571G8 from chromo...	40	9.5
23	ref\|XM_858302.1\| PREDICTED: Canis familiaris similar to Forkhead...	40	9.5
24	gb\|AC127690.4\| Mus musculus BAC clone RP24-215A3 from chromosome...	40	9.5
25	gb\|AC124716.4\| Mus musculus BAC clone RP24-144K17 from chromosom...	40	9.5
26	emb\|AL954134.16\| Zebrafish DNA sequence from clone CH211-267E7, ...	40	9.5
27	emb\|BX511006.10\| Zebrafish DNA sequence from clone DKEY-106F13 i...	40	9.5
28	gb\|AC121978.2\| Mus musculus BAC clone RP24-289K21 from 14, compl...	40	9.5
29	emb\|AL138830.20\| Human DNA sequence from clone RP3-399L15 on chr...	40	9.5
30	emb\|AL035252.5\|HS738P15 Human DNA sequence from clone RP4-738P15...	40	9.5
31	gb\|AC159882.2\| Mus musculus BAC clone RP24-480A4 from chromosome...	40	9.5
32	emb\|AL929351.1\|PFA929351 Plasmodium falciparum strain 3D7, chrom...	40	9.5
33	emb\|AL663103.4\| Mouse DNA sequence from clone RP23-267D13 on chr...	40	9.5
34	gb\|BC026840.1\| Mus musculus leucine zipper transcription factor-...	40	9.5
35	gb\|AC114786.4\| Homo sapiens BAC clone RP11-618I10 from 4, comple...	40	9.5
36	gb\|AC183495.1\| Brassica oleracea Contig A, complete sequence	40	9.5
37	dbj\|AK147312.1\| Mus musculus cDNA, RIKEN full-length enriched li...	40	9.5
38	dbj\|AK153470.1\| Mus musculus bone marrow macrophage cDNA, RIKEN ...	40	9.5
39	dbj\|AK029671.1\| Mus musculus adult male testis cDNA, RIKEN full-...	40	9.5
40	gb\|AC148835.3\| Pan troglodytes BAC clone CH251-25M11 from chromo...	40	9.5
41	gb\|AC004955.3\| Homo sapiens PAC clone RP5-1087M19 from 7, comple...	40	9.5
42	dbj\|AK081529.1\| Mus musculus 16 days embryo head cDNA, RIKEN ful...	40	9.5
43	gb\|AC158516.2\| Mus musculus BAC clone RP24-511A23 from chromosom...	40	9.5
44	dbj\|AK017445.1\| Mus musculus 10 days neonate head cDNA, RIKEN fu...	40	9.5
45	gb\|AC010085.3\|AC010085 Homo sapiens BAC clone RP11-168P10 from 7...	40	9.5
46	gb\|DP000026.1\| Pongo pygmaeus target 1 genomic scaffold	40	9.5
47	gb\|AC147213.3\| Pan troglodytes BAC clone RP43-127I22 from chromo...	40	9.5
48	gb\|AC125005.15\| Mus musculus chromosome 5, clone RP23-370D2, com...	40	9.5
49	gb\|AE001272.1\|AE001272 Lactococcus lactis DPC3147 plasmid pMRC01...	40	9.5
50	gb\|AC005401.1\|AC005401 Homo sapiens clone UWGC:g3586a297 from 7p...	40	9.5
51	gb\|AC110537.19\| Mus musculus chromosome 5, clone RP23-44A4, comp...	40	9.5
52	gb\|AC123816.4\| Mus musculus BAC clone RP24-254P6 from 8, complet...	40	9.5
53	emb\|AL954135.7\| Mouse DNA sequence from clone RP23-231H10 on chr...	40	9.5
54	dbj\|AP006692.1\| Lotus japonicus genomic DNA, chromosome 2, clone...	40	9.5
55	dbj\|AP006129.1\| Lotus japonicus genomic DNA, chromosome 2, clone...	40	9.5
56	emb\|AL591884.11\| Mouse DNA sequence from clone RP23-183N8 on chr...	40	9.5

>ref|XM_475664.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1353

 Score =  161 bits (81), Expect = 4e-36
 Identities = 172/201 (85%), Gaps = 1/201 (0%)
 Strand = Plus / Minus

                                                                        
Query: 480  tagtcatgggggcaacaagaacggttatcgctgcagcaaactgcattatctagttcacag 539
            |||||||| ||||| ||| | || |||||  ||||||||||||| ||||| |||||||| 
Sbjct: 1214 tagtcatgagggcagcaatagcgattatccttgcagcaaactgcgttatccagttcacaa 1155

                                                                        
Query: 540  cagctccaggaaagacagaatcccaaggctcgccaggagcagcagcaggtggatccttca 599
            || ||||||||||| || |  |||| | | ||||||||||||||||||||||||||||||
Sbjct: 1154 caactccaggaaaggcatagccccaggacacgccaggagcagcagcaggtggatccttca 1095

                                                                        
Query: 600  gggcaggaggtaaaaacactgcatttggttgggccagggccctggtgaagggggaggatt 659
            |||||  |||||| ||  |||||||||||||| ||  |||||||||||||| ||||||||
Sbjct: 1094 gggcaataggtaagaaggctgcatttggttggacc-tggccctggtgaaggaggaggatt 1036

                                 
Query: 660  cgggcttgtttttgtagggaa 680
            |||||||| ||| ||||||||
Sbjct: 1035 cgggcttgatttcgtagggaa 1015



 Score = 61.9 bits (31), Expect = 3e-06
 Identities = 55/63 (87%)
 Strand = Plus / Minus

                                                                        
Query: 344  tcactgatccaacagttccaacaaaccattccaagaggggaccttggagaaagcttgctt 403
            ||||||||||||||||||||||||||||  | |||| || || |||||||||| ||| ||
Sbjct: 1353 tcactgatccaacagttccaacaaaccacccaaagaaggaactttggagaaaggttgttt 1294

               
Query: 404  cct 406
            |||
Sbjct: 1293 cct 1291

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>gb|AC130601.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBb0108E17, complete sequence
          Length = 139829

 Score =  161 bits (81), Expect = 4e-36
 Identities = 172/201 (85%), Gaps = 1/201 (0%)
 Strand = Plus / Minus

                                                                         
Query: 480   tagtcatgggggcaacaagaacggttatcgctgcagcaaactgcattatctagttcacag 539
             |||||||| ||||| ||| | || |||||  ||||||||||||| ||||| |||||||| 
Sbjct: 25435 tagtcatgagggcagcaatagcgattatccttgcagcaaactgcgttatccagttcacaa 25376

                                                                         
Query: 540   cagctccaggaaagacagaatcccaaggctcgccaggagcagcagcaggtggatccttca 599
             || ||||||||||| || |  |||| | | ||||||||||||||||||||||||||||||
Sbjct: 25375 caactccaggaaaggcatagccccaggacacgccaggagcagcagcaggtggatccttca 25316

                                                                         
Query: 600   gggcaggaggtaaaaacactgcatttggttgggccagggccctggtgaagggggaggatt 659
             |||||  |||||| ||  |||||||||||||| ||  |||||||||||||| ||||||||
Sbjct: 25315 gggcaataggtaagaaggctgcatttggttggacc-tggccctggtgaaggaggaggatt 25257

                                  
Query: 660   cgggcttgtttttgtagggaa 680
             |||||||| ||| ||||||||
Sbjct: 25256 cgggcttgatttcgtagggaa 25236



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                         
Query: 342   gctcactgatccaacagttccaacaaaccattccaagaggggaccttggagaaagcttgc 401
             ||||||||||||||||||||||||||||||  | |||| || || |||||||||| ||| 
Sbjct: 25803 gctcactgatccaacagttccaacaaaccacccaaagaaggaactttggagaaaggttgt 25744

                  
Query: 402   ttcct 406
             |||||
Sbjct: 25743 ttcct 25739

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score =  161 bits (81), Expect = 4e-36
 Identities = 172/201 (85%), Gaps = 1/201 (0%)
 Strand = Plus / Minus

                                                                            
Query: 480      tagtcatgggggcaacaagaacggttatcgctgcagcaaactgcattatctagttcacag 539
                |||||||| ||||| ||| | || |||||  ||||||||||||| ||||| |||||||| 
Sbjct: 24956582 tagtcatgagggcagcaatagcgattatccttgcagcaaactgcgttatccagttcacaa 24956523

                                                                            
Query: 540      cagctccaggaaagacagaatcccaaggctcgccaggagcagcagcaggtggatccttca 599
                || ||||||||||| || |  |||| | | ||||||||||||||||||||||||||||||
Sbjct: 24956522 caactccaggaaaggcatagccccaggacacgccaggagcagcagcaggtggatccttca 24956463

                                                                            
Query: 600      gggcaggaggtaaaaacactgcatttggttgggccagggccctggtgaagggggaggatt 659
                |||||  |||||| ||  |||||||||||||| ||  |||||||||||||| ||||||||
Sbjct: 24956462 gggcaataggtaagaaggctgcatttggttggacc-tggccctggtgaaggaggaggatt 24956404

                                     
Query: 660      cgggcttgtttttgtagggaa 680
                |||||||| ||| ||||||||
Sbjct: 24956403 cgggcttgatttcgtagggaa 24956383



 Score = 65.9 bits (33), Expect = 2e-07
 Identities = 57/65 (87%)
 Strand = Plus / Minus

                                                                            
Query: 342      gctcactgatccaacagttccaacaaaccattccaagaggggaccttggagaaagcttgc 401
                ||||||||||||||||||||||||||||||  | |||| || || |||||||||| ||| 
Sbjct: 24956950 gctcactgatccaacagttccaacaaaccacccaaagaaggaactttggagaaaggttgt 24956891

                     
Query: 402      ttcct 406
                |||||
Sbjct: 24956890 ttcct 24956886

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>gb|AY108327.1| Zea mays PCO144502 mRNA sequence
          Length = 896

 Score = 93.7 bits (47), Expect = 7e-16
 Identities = 116/139 (83%)
 Strand = Plus / Minus

                                                                       
Query: 463 ctgtgtcacatataggatagtcatgggggcaacaagaacggttatcgctgcagcaaactg 522
           |||| ||||| | |||||||||||| ||||| ||  | ||||||||  ||||||||||||
Sbjct: 145 ctgtatcacaaacaggatagtcatgagggcagcagtaccggttatccttgcagcaaactg 86

                                                                       
Query: 523 cattatctagttcacagcagctccaggaaagacagaatcccaaggctcgccaggagcagc 582
           |||| || ||||| || |||||||||||||| || || |||||| | ||||| ||||| |
Sbjct: 85  cattgtccagttcgcaacagctccaggaaaggcaaaagcccaagacacgccatgagcaac 26

                              
Query: 583 agcaggtggatccttcagg 601
           | ||||||||||| |||||
Sbjct: 25  aacaggtggatccctcagg 7

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>emb|BX571983.11| Zebrafish DNA sequence from clone DKEY-18M7 in linkage group 11,
             complete sequence
          Length = 248929

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 187   acatctctgtttttcattcaac 208
             ||||||||||||||||||||||
Sbjct: 67073 acatctctgtttttcattcaac 67052

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>emb|CR550307.8| Zebrafish DNA sequence from clone DKEY-174E10 in linkage group 11,
              complete sequence
          Length = 178645

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 187    acatctctgtttttcattcaac 208
              ||||||||||||||||||||||
Sbjct: 167531 acatctctgtttttcattcaac 167552

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>gb|AC101689.12| Mus musculus chromosome 1, clone RP23-217C21, complete sequence
          Length = 189241

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 302   atacatgtgtatctgtctgtg 322
             |||||||||||||||||||||
Sbjct: 53777 atacatgtgtatctgtctgtg 53757

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>gb|AC115728.11| Mus musculus chromosome 5, clone RP23-31J24, complete sequence
          Length = 211351

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 219    tctccttgcaaggcaaccagc 239
              |||||||||||||||||||||
Sbjct: 118615 tctccttgcaaggcaaccagc 118595

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>gb|AC124993.19| Mus musculus chromosome 15, clone RP23-150J21, complete sequence
          Length = 214304

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 632   gccagggccctggtgaagggg 652
             |||||||||||||||||||||
Sbjct: 73368 gccagggccctggtgaagggg 73348

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>gb|AC133504.2| Mus musculus BAC clone RP24-174N6 from chromosome 15, complete sequence
          Length = 145186

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 632    gccagggccctggtgaagggg 652
              |||||||||||||||||||||
Sbjct: 139850 gccagggccctggtgaagggg 139830

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>gb|AC078985.14| Homo sapiens 3q BAC RP11-82C9 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 180982

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 181    tactggacatctctgtttttcattc 205
              |||||| ||||||||||||||||||
Sbjct: 154841 tactgggcatctctgtttttcattc 154817

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>gb|AC163028.5| Mus musculus chromosome 1, clone RP23-393I22, complete sequence
          Length = 206399

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 302  atacatgtgtatctgtctgtg 322
            |||||||||||||||||||||
Sbjct: 6410 atacatgtgtatctgtctgtg 6430

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>gb|AC155311.2| Mus musculus BAC clone RP23-407F7 from chromosome 12, complete sequence
          Length = 166104

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 357   agttccaacaaaccattccaa 377
             |||||||||||||||||||||
Sbjct: 73365 agttccaacaaaccattccaa 73385

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>gb|AC107052.4| Homo sapiens BAC clone RP11-346A19 from 2, complete sequence
          Length = 177987

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 335   tttgtatgctcactgatccaa 355
             |||||||||||||||||||||
Sbjct: 39242 tttgtatgctcactgatccaa 39262

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>dbj|AK193719.1| Mus musculus cDNA, clone:Y1G0113C17, strand:minus,
           reference:ENSEMBL:Mouse-Transcript-
           ENST:ENSMUST00000049460, based on BLAT search
          Length = 413

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 581 gcagcaggtggatccttcagggcag 605
           |||||||||| ||||||||||||||
Sbjct: 411 gcagcaggtgtatccttcagggcag 387

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>gb|AE016822.1| Leifsonia xyli subsp. xyli str. CTCB07, complete genome
          Length = 2584158

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 569    tcgccaggagcagcagcagg 588
              ||||||||||||||||||||
Sbjct: 130494 tcgccaggagcagcagcagg 130475

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>gb|AC150912.3| Pan troglodytes BAC clone CH251-18B3 from chromosome 7, complete
             sequence
          Length = 170021

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 540   cagctccaggaaagacagaa 559
             ||||||||||||||||||||
Sbjct: 25557 cagctccaggaaagacagaa 25538

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>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome
          Length = 3814139

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 565     aggctcgccaggagcagcag 584
               ||||||||||||||||||||
Sbjct: 2565819 aggctcgccaggagcagcag 2565838

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>ref|NM_033322.2| Mus musculus leucine zipper transcription factor-like 1 (Lztfl1),
            mRNA
          Length = 3438

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 303  tacatgtgtatctgtctgtg 322
            ||||||||||||||||||||
Sbjct: 3230 tacatgtgtatctgtctgtg 3249

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>gb|AC145992.2| Pan troglodytes BAC clone RP43-172K3 from 7, complete sequence
          Length = 208817

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 302   atacatgtgtatctgtctgt 321
             ||||||||||||||||||||
Sbjct: 11072 atacatgtgtatctgtctgt 11053

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>gb|AC165425.2| Mus musculus BAC clone RP23-252G18 from chromosome 9, complete sequence
          Length = 217329

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 303    tacatgtgtatctgtctgtg 322
              ||||||||||||||||||||
Sbjct: 125507 tacatgtgtatctgtctgtg 125526

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>gb|AC148932.3| Pan troglodytes BAC clone CH251-571G8 from chromosome 7, complete
              sequence
          Length = 232604

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 540    cagctccaggaaagacagaa 559
              ||||||||||||||||||||
Sbjct: 166709 cagctccaggaaagacagaa 166690

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>ref|XM_858302.1| PREDICTED: Canis familiaris similar to Forkhead box protein P1,
           transcript variant 9 (LOC484692), mRNA
          Length = 2482

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 572 ccaggagcagcagcaggtgg 591
           ||||||||||||||||||||
Sbjct: 210 ccaggagcagcagcaggtgg 229

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>gb|AC127690.4| Mus musculus BAC clone RP24-215A3 from chromosome 17, complete sequence
          Length = 187751

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 571    gccaggagcagcagcaggtg 590
              ||||||||||||||||||||
Sbjct: 110584 gccaggagcagcagcaggtg 110603

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>gb|AC124716.4| Mus musculus BAC clone RP24-144K17 from chromosome 19, complete
             sequence
          Length = 194362

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 303   tacatgtgtatctgtctgtg 322
             ||||||||||||||||||||
Sbjct: 38966 tacatgtgtatctgtctgtg 38947

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>emb|AL954134.16| Zebrafish DNA sequence from clone CH211-267E7, complete sequence
          Length = 160551

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 115   ataaaaacacaatacaataataca 138
             ||||||| ||||||||||||||||
Sbjct: 33077 ataaaaaaacaatacaataataca 33100

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>emb|BX511006.10| Zebrafish DNA sequence from clone DKEY-106F13 in linkage group 7,
             complete sequence
          Length = 220514

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 111   aatcataaaaacacaatacaataa 134
             ||||| ||||||||||||||||||
Sbjct: 60028 aatcaaaaaaacacaatacaataa 60051

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>gb|AC121978.2| Mus musculus BAC clone RP24-289K21 from 14, complete sequence
          Length = 168968

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 129   caataatacagtaccagctg 148
             ||||||||||||||||||||
Sbjct: 36652 caataatacagtaccagctg 36633

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>emb|AL138830.20| Human DNA sequence from clone RP3-399L15 on chromosome 6q21-22.2
             Contains 2 putative novel genes, complete sequence
          Length = 141924

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 315   tgtctgtgatccatcccttctttg 338
             |||||| |||||||||||||||||
Sbjct: 49437 tgtctgagatccatcccttctttg 49460

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>emb|AL035252.5|HS738P15 Human DNA sequence from clone RP4-738P15 on chromosome 20p11.2-11.22
             Contains a novel gene (LOC284798), a novel pseudogene, the
             ENTPD6 gene for ectonucleoside triphosphate
             diphosphohydrolase 6 (putative function) and two CpG
             islands, complete sequence
          Length = 108487

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 631   ggccagggccctggtgaagg 650
             ||||||||||||||||||||
Sbjct: 92123 ggccagggccctggtgaagg 92142

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>gb|AC159882.2| Mus musculus BAC clone RP24-480A4 from chromosome 9, complete sequence
          Length = 178827

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 102    gacatgtacaatcataaaaacaca 125
              |||||||||| |||||||||||||
Sbjct: 145409 gacatgtacattcataaaaacaca 145386

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>emb|AL929351.1|PFA929351 Plasmodium falciparum strain 3D7, chromosome 5, segment 1/4
          Length = 347050

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 2      tctttattattatgggtgct 21
              ||||||||||||||||||||
Sbjct: 186071 tctttattattatgggtgct 186052

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>emb|AL663103.4| Mouse DNA sequence from clone RP23-267D13 on chromosome 11, complete
             sequence
          Length = 238478

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 573   caggagcagcagcaggtgga 592
             ||||||||||||||||||||
Sbjct: 45951 caggagcagcagcaggtgga 45932

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>gb|BC026840.1| Mus musculus leucine zipper transcription factor-like 1, mRNA (cDNA
            clone MGC:28486 IMAGE:4165152), complete cds
          Length = 3438

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 303  tacatgtgtatctgtctgtg 322
            ||||||||||||||||||||
Sbjct: 3230 tacatgtgtatctgtctgtg 3249

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>gb|AC114786.4| Homo sapiens BAC clone RP11-618I10 from 4, complete sequence
          Length = 148977

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 223   cttgcaaggcaaccagcagc 242
             ||||||||||||||||||||
Sbjct: 80170 cttgcaaggcaaccagcagc 80151

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>gb|AC183495.1| Brassica oleracea Contig A, complete sequence
          Length = 356505

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 401    cttcctcttgattccttcta 420
              ||||||||||||||||||||
Sbjct: 308446 cttcctcttgattccttcta 308465

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>dbj|AK147312.1| Mus musculus cDNA, RIKEN full-length enriched library,
            clone:M5C1012D21 product:leucine zipper transcription
            factor-like 1, full insert sequence
          Length = 6544

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 303  tacatgtgtatctgtctgtg 322
            ||||||||||||||||||||
Sbjct: 3174 tacatgtgtatctgtctgtg 3193

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>dbj|AK153470.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length
           enriched library, clone:I830164F07 product:granulin,
           full insert sequence
          Length = 2145

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 578 gcagcagcaggtggatccttcagggcag 605
           ||||||||||||  ||||||||||||||
Sbjct: 930 gcagcagcaggtatatccttcagggcag 903

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>dbj|AK029671.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4930447E08 product:leucine zipper
            transcription factor-like 1, full insert sequence
          Length = 3426

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 303  tacatgtgtatctgtctgtg 322
            ||||||||||||||||||||
Sbjct: 3267 tacatgtgtatctgtctgtg 3286

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>gb|AC148835.3| Pan troglodytes BAC clone CH251-25M11 from chromosome 7, complete
             sequence
          Length = 154596

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 540   cagctccaggaaagacagaa 559
             ||||||||||||||||||||
Sbjct: 26220 cagctccaggaaagacagaa 26201

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>gb|AC004955.3| Homo sapiens PAC clone RP5-1087M19 from 7, complete sequence
          Length = 120557

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 302   atacatgtgtatctgtctgt 321
             ||||||||||||||||||||
Sbjct: 34892 atacatgtgtatctgtctgt 34911

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>dbj|AK081529.1| Mus musculus 16 days embryo head cDNA, RIKEN full-length enriched
            library, clone:C130033J18 product:leucine zipper
            transcription factor-like 1, full insert sequence
          Length = 3748

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 303  tacatgtgtatctgtctgtg 322
            ||||||||||||||||||||
Sbjct: 3015 tacatgtgtatctgtctgtg 3034

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>gb|AC158516.2| Mus musculus BAC clone RP24-511A23 from chromosome 9, complete sequence
          Length = 167046

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 547    aggaaagacagaatcccaag 566
              ||||||||||||||||||||
Sbjct: 129097 aggaaagacagaatcccaag 129116

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>dbj|AK017445.1| Mus musculus 10 days neonate head cDNA, RIKEN full-length enriched
            library, clone:5530402H04 product:inferred: leucine
            zipper transcription factor-like 1, full insert sequence
          Length = 2236

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 303  tacatgtgtatctgtctgtg 322
            ||||||||||||||||||||
Sbjct: 1464 tacatgtgtatctgtctgtg 1483

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>gb|AC010085.3|AC010085 Homo sapiens BAC clone RP11-168P10 from 7, complete sequence
          Length = 121912

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 540   cagctccaggaaagacagaa 559
             ||||||||||||||||||||
Sbjct: 10923 cagctccaggaaagacagaa 10942

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>gb|DP000026.1| Pongo pygmaeus target 1 genomic scaffold
          Length = 1819346

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 389    ggagaaagcttgcttcctct 408
              ||||||||||||||||||||
Sbjct: 720156 ggagaaagcttgcttcctct 720137

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>gb|AC147213.3| Pan troglodytes BAC clone RP43-127I22 from chromosome 7, complete
              sequence
          Length = 205208

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 302    atacatgtgtatctgtctgt 321
              ||||||||||||||||||||
Sbjct: 157621 atacatgtgtatctgtctgt 157602

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>gb|AC125005.15| Mus musculus chromosome 5, clone RP23-370D2, complete sequence
          Length = 176900

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 225    tgcaaggcaaccagcagcta 244
              ||||||||||||||||||||
Sbjct: 168105 tgcaaggcaaccagcagcta 168086

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>gb|AE001272.1|AE001272 Lactococcus lactis DPC3147 plasmid pMRC01, complete plasmid sequence
          Length = 60232

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 517  aaactgcattatctagttca 536
            ||||||||||||||||||||
Sbjct: 4784 aaactgcattatctagttca 4765

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>gb|AC005401.1|AC005401 Homo sapiens clone UWGC:g3586a297 from 7p14-15, complete sequence
          Length = 44406

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 540   cagctccaggaaagacagaa 559
             ||||||||||||||||||||
Sbjct: 35598 cagctccaggaaagacagaa 35579

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>gb|AC110537.19| Mus musculus chromosome 5, clone RP23-44A4, complete sequence
          Length = 208136

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 225   tgcaaggcaaccagcagcta 244
             ||||||||||||||||||||
Sbjct: 22313 tgcaaggcaaccagcagcta 22294

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>gb|AC123816.4| Mus musculus BAC clone RP24-254P6 from 8, complete sequence
          Length = 197641

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 299    tgcatacatgtgtatctgtctgtg 322
              ||||||||||||||| ||||||||
Sbjct: 164826 tgcatacatgtgtatgtgtctgtg 164803

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>emb|AL954135.7| Mouse DNA sequence from clone RP23-231H10 on chromosome 4, complete
             sequence
          Length = 100102

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 299   tgcatacatgtgtatctgtctgtg 322
             ||||||||||||||||||| ||||
Sbjct: 37694 tgcatacatgtgtatctgtgtgtg 37717

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>dbj|AP006692.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT06K23, TM0391,
             complete sequence
          Length = 98505

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   ccagcagctagaggtggcag 254
             ||||||||||||||||||||
Sbjct: 56541 ccagcagctagaggtggcag 56560

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>dbj|AP006129.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT27K02, TM0225,
             complete sequence
          Length = 70805

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 235   ccagcagctagaggtggcag 254
             ||||||||||||||||||||
Sbjct: 13458 ccagcagctagaggtggcag 13477

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>emb|AL591884.11| Mouse DNA sequence from clone RP23-183N8 on chromosome 2, complete
              sequence
          Length = 204495

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 215    gacatctccttgcaaggcaa 234
              ||||||||||||||||||||
Sbjct: 119033 gacatctccttgcaaggcaa 119014


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,608,647
Number of Sequences: 3902068
Number of extensions: 7608647
Number of successful extensions: 148829
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 148611
Number of HSP's gapped (non-prelim): 212
length of query: 693
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 670
effective length of database: 17,143,297,704
effective search space: 11486009461680
effective search space used: 11486009461680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result