ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27m23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1M4K4_MOUSE (P97820) Mitogen-activated protein kinase kinase kina... 31 2.4
2PCD19_MOUSE (Q80TF3) Protocadherin-19 precursor 29 9.3

>M4K4_MOUSE (P97820) Mitogen-activated protein kinase kinase kinase kinase 4|
           (EC 2.7.11.1) (MAPK/ERK kinase kinase kinase 4) (MEK
           kinase kinase 4) (MEKKK 4) (HPK/GCK-like kinase HGK)
           (Nck-interacting kinase)
          Length = 1233

 Score = 31.2 bits (69), Expect = 2.4
 Identities = 23/61 (37%), Positives = 29/61 (47%), Gaps = 12/61 (19%)
 Frame = -2

Query: 293 LLHVHRQREDAQRAGPPQYQ----------EPRPQDDRIH--REVKWILHRGYIASLLGN 150
           LLH HR+    Q+  PPQ Q          EP+P  D     REV+W     ++ASL  N
Sbjct: 492 LLHDHRRPHAQQQPPPPQQQDRSKPSFHAPEPKPHYDPADRAREVQW----SHLASLKNN 547

Query: 149 V 147
           V
Sbjct: 548 V 548



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>PCD19_MOUSE (Q80TF3) Protocadherin-19 precursor|
          Length = 1145

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 17/59 (28%), Positives = 30/59 (50%)
 Frame = +3

Query: 33  TDKIN*LNREFITSLVFLHLCSHRKL*LGCHKLSHTSMDVPKQRSNISTV*NPFHFSMN 209
           TDK+N ++   +TS +       + L LGC +   T ++V  Q +  +T  + +H S N
Sbjct: 796 TDKMNVVSCSSLTSSLNYFDYHQQTLPLGCRRSESTFLNVENQNTRNTTASHIYHHSFN 854


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,791,778
Number of Sequences: 219361
Number of extensions: 1062834
Number of successful extensions: 3451
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3450
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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