ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27m19
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_472720.1| Oryza sativa (japonica cultivar-group), predic... 222 1e-54
2dbj|AK120652.1| Oryza sativa (japonica cultivar-group) cDNA clon... 222 1e-54
3gb|AY108342.1| Zea mays PCO124891 mRNA sequence 208 2e-50
4dbj|AB060812.1| Bruguiera gymnorhiza LAS mRNA for lipoic acid sy... 159 1e-35
5emb|AL731584.3|OSJN00224 Oryza sativa genomic DNA, chromosome 4,... 145 2e-31
6dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 145 2e-31
7gb|DQ181624.1| Pisum sativum putative lipoic acid synthase mRNA,... 131 3e-27
8gb|DQ181623.1| Pisum sativum putative lipoic acid synthase mRNA,... 123 7e-25
9gb|AC072023.9| Homo sapiens 3 BAC RP11-3J2 (Roswell Park Cancer ... 44 0.53
10emb|AL806533.8| Mouse DNA sequence from clone RP23-468I23 on chr... 44 0.53
11gb|AC073626.7| Homo sapiens BAC clone RP11-95P9 from 7, complete... 42 2.1
12gb|AC117118.4| Rattus norvegicus 1 BAC CH230-161O8 (Children's H... 42 2.1
13ref|XM_735236.1| Plasmodium chabaudi chabaudi hypothetical prote... 42 2.1
14gb|AC113603.6| Homo sapiens chromosome 8, clone RP11-101N9, comp... 42 2.1
15gb|AC009840.7| Drosophila melanogaster 3L BAC RP98-2B14 (Roswell... 42 2.1
16gb|AC116154.2| Homo sapiens chromosome 8, clone RP11-927P11, com... 42 2.1
17gb|AC006233.4| Arabidopsis thaliana chromosome 2 clone F12K2 map... 42 2.1
18ref|NM_079459.2| Drosophila melanogaster Lipoic acid synthase CG... 42 2.1
19gb|AC068102.5| Homo sapiens chromosome 8, clone RP11-333M8, comp... 42 2.1
20gb|AY058557.1| Drosophila melanogaster LD24887 full length cDNA 42 2.1
21ref|XM_628554.1| Cryptosporidium parvum Iowa II 2*FF domain prot... 42 2.1
22gb|AC013726.7| Homo sapiens BAC clone RP11-400N9 from 2, complet... 42 2.1
23gb|BT003750.1| Drosophila melanogaster RH26374 full insert cDNA 42 2.1
24gb|AC084724.6| Homo sapiens BAC clone RP11-613O14 from 4, comple... 42 2.1
25emb|BX647827.1|HSM807973 Homo sapiens mRNA; cDNA DKFZp686G0686 (... 42 2.1
26emb|BX248499.12| Zebrafish DNA sequence from clone CH211-284A13 ... 42 2.1
27gb|AE003591.4| Drosophila melanogaster chromosome 3L, section 72... 42 2.1
28gb|AC163745.4| Pan troglodytes BAC clone CH251-381N15 from chrom... 42 2.1
29emb|BX537649.1|HSM806498 Homo sapiens mRNA; cDNA DKFZp686D1084 (... 42 2.1
30dbj|AP004389.2| Homo sapiens genomic DNA, chromosome 8q23, clone... 42 2.1
31gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome 40 8.2
32gb|AC131743.3| Mus musculus BAC clone RP23-68K21 from chromosome... 40 8.2
33ref|XM_535765.2| PREDICTED: Canis familiaris similar to Protein ... 40 8.2
34gb|AC122935.3| Mus musculus BAC clone RP23-20E4 from chromosome ... 40 8.2
35gb|AC107024.5| Homo sapiens 3 BAC RP11-447J13 (Roswell Park Canc... 40 8.2
36ref|XM_651676.1| Entamoeba histolytica HM-1:IMSS DNA polymerase ... 40 8.2
37ref|XM_721797.1| Plasmodium yoelii yoelii str. 17XNL ferredoxin ... 40 8.2
38emb|AL139351.37| Human DNA sequence from clone RP11-321P16 on ch... 40 8.2
39gb|AC133680.2| Homo sapiens 3 BAC RP11-102C20 (Roswell Park Canc... 40 8.2
40gb|AC097745.8| Rattus norvegicus 3 BAC CH230-11N5 (Children's Ho... 40 8.2
41gb|AC161606.5| Mus musculus BAC clone RP23-232M18 from chromosom... 40 8.2
42emb|AL929356.1|PFA929356 Plasmodium falciparum strain 3D7, chrom... 40 8.2
43emb|CR847856.3| Mouse DNA sequence from clone RP23-447G16 on chr... 40 8.2
44emb|BX546460.6| Zebrafish DNA sequence from clone RP71-84C10, co... 40 8.2
45gb|AC010695.5| Drosophila melanogaster 3L BAC RP98-20J4 (Roswell... 40 8.2
46gb|AC105925.5| Homo sapiens BAC clone RP11-753I4 from 4, complet... 40 8.2
47gb|AC159825.2| Mus musculus BAC clone RP23-100J21 from chromosom... 40 8.2
48dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
49gb|AC016526.6|AC016526 Homo sapiens chromosome 14 clone RP11-361... 40 8.2
50gb|AC117396.2| Homo sapiens 3 BAC RP11-89E16 (Roswell Park Cance... 40 8.2
51dbj|AP005004.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
52dbj|BS000068.1| Pan troglodytes chromosome 22 clone:RP43-046F21,... 40 8.2
53gb|AC008015.5|AC008015 Homo sapiens chromosome 14 BAC 98L12, com... 40 8.2
54gb|AE003530.3| Drosophila melanogaster chromosome 3L, section 55... 40 8.2
55dbj|AP001681.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 40 8.2
56dbj|AP001252.2| Homo sapiens genomic DNA, chromosome 21q, clone:... 40 8.2
57gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 40 8.2
58gb|AC116952.4| Mus musculus BAC clone RP23-104A7 from 14, comple... 40 8.2
59emb|AL929082.7| Zebrafish DNA sequence from clone CH211-113P18, ... 40 8.2
60gb|AF125163.2| Bacteriophage K139, complete genome 40 8.2
61emb|AL773534.10| Mouse DNA sequence from clone RP23-183O12 on ch... 40 8.2
62gb|AC026673.27| Homo sapiens 3 BAC RP11-56B20 (Roswell Park Canc... 40 8.2 
>ref|XM_472720.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1149

 Score =  222 bits (112), Expect = 1e-54
 Identities = 217/252 (86%)
 Strand = Plus / Minus

                                                                        
Query: 343  ttttgctcggtcatcttcgatcatggctttgatgtagaactcgcctgctttgtaggagga 402
            |||||||| |||| |||| ||||||||||| ||||||||||| || ||||||||||| ||
Sbjct: 1131 ttttgctctgtcagcttcaatcatggcttttatgtagaactcaccagctttgtaggaaga 1072

                                                                        
Query: 403  ccgaaccatcggaccagatgcaacataacggaatcccatttcaacaccaagggctcggta 462
             |||||||| || || || || ||||||||||| ||||| ||||||||||||| ||| ||
Sbjct: 1071 tcgaaccattgggcccgaagccacataacggaagcccatgtcaacaccaagggatcgata 1012

                                                                        
Query: 463  gttctcaaaggcttcaggagtaatatactcagacactggcatatgtcgctttgacggcct 522
              ||||||||||||| ||||||| |||||| || || |||||||| || || || || ||
Sbjct: 1011 cctctcaaaggcttcgggagtaacatactcggaaacaggcatatgacgtttagatggtct 952

                                                                        
Query: 523  catgtactgaccaaatgtaatgacatcaacaccagcagctctcaccttttccattgtgct 582
            |||||||||||||||||| || ||||||||||||||||| || ||||||||| | |||||
Sbjct: 951  catgtactgaccaaatgtcattacatcaacaccagcagccctaaccttttccgtcgtgct 892

                        
Query: 583  gataacctgatc 594
            ||||||||||||
Sbjct: 891  gataacctgatc 880
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>dbj|AK120652.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013157E03, full
            insert sequence
          Length = 1543

 Score =  222 bits (112), Expect = 1e-54
 Identities = 217/252 (86%)
 Strand = Plus / Minus

                                                                        
Query: 343  ttttgctcggtcatcttcgatcatggctttgatgtagaactcgcctgctttgtaggagga 402
            |||||||| |||| |||| ||||||||||| ||||||||||| || ||||||||||| ||
Sbjct: 1242 ttttgctctgtcagcttcaatcatggcttttatgtagaactcaccagctttgtaggaaga 1183

                                                                        
Query: 403  ccgaaccatcggaccagatgcaacataacggaatcccatttcaacaccaagggctcggta 462
             |||||||| || || || || ||||||||||| ||||| ||||||||||||| ||| ||
Sbjct: 1182 tcgaaccattgggcccgaagccacataacggaagcccatgtcaacaccaagggatcgata 1123

                                                                        
Query: 463  gttctcaaaggcttcaggagtaatatactcagacactggcatatgtcgctttgacggcct 522
              ||||||||||||| ||||||| |||||| || || |||||||| || || || || ||
Sbjct: 1122 cctctcaaaggcttcgggagtaacatactcggaaacaggcatatgacgtttagatggtct 1063

                                                                        
Query: 523  catgtactgaccaaatgtaatgacatcaacaccagcagctctcaccttttccattgtgct 582
            |||||||||||||||||| || ||||||||||||||||| || ||||||||| | |||||
Sbjct: 1062 catgtactgaccaaatgtcattacatcaacaccagcagccctaaccttttccgtcgtgct 1003

                        
Query: 583  gataacctgatc 594
            ||||||||||||
Sbjct: 1002 gataacctgatc 991
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>gb|AY108342.1| Zea mays PCO124891 mRNA sequence
          Length = 1387

 Score =  208 bits (105), Expect = 2e-50
 Identities = 213/249 (85%)
 Strand = Plus / Minus

                                                                        
Query: 357  cttcgatcatggctttgatgtagaactcgcctgctttgtaggaggaccgaaccatcggac 416
            |||||||||| || ||||||||||| || ||||| ||||| || ||||| ||||| || |
Sbjct: 1209 cttcgatcatagccttgatgtagaattcacctgccttgtacgaagaccggaccattggcc 1150

                                                                        
Query: 417  cagatgcaacataacggaatcccatttcaacaccaagggctcggtagttctcaaaggctt 476
            |||| ||||| || ||||| |||||||| ||||||||||| || || |||||||| ||||
Sbjct: 1149 cagacgcaacgtagcggaaccccatttcgacaccaagggcccgatacttctcaaaagctt 1090

                                                                        
Query: 477  caggagtaatatactcagacactggcatatgtcgctttgacggcctcatgtactgaccaa 536
            |||| |||| ||||||||| || ||||| || || ||||| |||||||||||||| ||||
Sbjct: 1089 caggcgtaacatactcagaaacaggcatgtgacgttttgatggcctcatgtactggccaa 1030

                                                                        
Query: 537  atgtaatgacatcaacaccagcagctctcaccttttccattgtgctgataacctgatcgg 596
            |||| |||||||||||| ||||||| ||||| |||||||| || || ||||||||||| |
Sbjct: 1029 atgttatgacatcaacatcagcagccctcactttttccatggtcctaataacctgatctg 970

                     
Query: 597  gagtctccc 605
            |||||||||
Sbjct: 969  gagtctccc 961
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>dbj|AB060812.1| Bruguiera gymnorhiza LAS mRNA for lipoic acid synthase, complete cds
          Length = 1478

 Score =  159 bits (80), Expect = 1e-35
 Identities = 176/208 (84%)
 Strand = Plus / Minus

                                                                        
Query: 371  ttgatgtagaactcgcctgctttgtaggaggaccgaaccatcggaccagatgcaacataa 430
            |||||||||||||| || |||||||| || ||||  ||||| ||||||||||| ||||||
Sbjct: 1107 ttgatgtagaactccccagctttgtatgatgaccttaccatgggaccagatgctacataa 1048

                                                                        
Query: 431  cggaatcccatttcaacaccaagggctcggtagttctcaaaggcttcaggagtaatatac 490
            ||||||||||||||| | |||||  ||   || ||||| ||||| ||||| || || || 
Sbjct: 1047 cggaatcccatttcatcgccaagaactttatacttctcgaaggcctcaggggtgatgtat 988

                                                                        
Query: 491  tcagacactggcatatgtcgctttgacggcctcatgtactgaccaaatgtaatgacatca 550
            |||||||| ||||| || || ||||| || ||||||||||||||||| ||||||||||||
Sbjct: 987  tcagacacgggcatgtggcgttttgagggtctcatgtactgaccaaaggtaatgacatca 928

                                        
Query: 551  acaccagcagctctcaccttttccattg 578
            |||||||| || |||||||| |||||||
Sbjct: 927  acaccagctgccctcaccttctccattg 900
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>emb|AL731584.3|OSJN00224 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0006M15,
              complete sequence
          Length = 143109

 Score =  145 bits (73), Expect = 2e-31
 Identities = 136/157 (86%)
 Strand = Plus / Plus

                                                                          
Query: 438    ccatttcaacaccaagggctcggtagttctcaaaggcttcaggagtaatatactcagaca 497
              |||| ||||||||||||| ||| ||  ||||||||||||| ||||||| |||||| || |
Sbjct: 115863 ccatgtcaacaccaagggatcgatacctctcaaaggcttcgggagtaacatactcggaaa 115922

                                                                          
Query: 498    ctggcatatgtcgctttgacggcctcatgtactgaccaaatgtaatgacatcaacaccag 557
              | |||||||| || || || || |||||||||||||||||||| || |||||||||||||
Sbjct: 115923 caggcatatgacgtttagatggtctcatgtactgaccaaatgtcattacatcaacaccag 115982

                                                   
Query: 558    cagctctcaccttttccattgtgctgataacctgatc 594
              |||| || ||||||||| | |||||||||||||||||
Sbjct: 115983 cagccctaaccttttccgtcgtgctgataacctgatc 116019



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                          
Query: 343    ttttgctcggtcatcttcgatcatggctttgatgtagaactcgcctgctttgtaggagga 402
              |||||||| |||| |||| ||||||||||| ||||||||||| || ||||||||||| ||
Sbjct: 114898 ttttgctctgtcagcttcaatcatggcttttatgtagaactcaccagctttgtaggaaga 114957

                                               
Query: 403    ccgaaccatcggaccagatgcaacataacggaa 435
               |||||||| || || || || |||||||||||
Sbjct: 114958 tcgaaccattgggcccgaagccacataacggaa 114990
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  145 bits (73), Expect = 2e-31
 Identities = 136/157 (86%)
 Strand = Plus / Plus

                                                                            
Query: 438      ccatttcaacaccaagggctcggtagttctcaaaggcttcaggagtaatatactcagaca 497
                |||| ||||||||||||| ||| ||  ||||||||||||| ||||||| |||||| || |
Sbjct: 22778667 ccatgtcaacaccaagggatcgatacctctcaaaggcttcgggagtaacatactcggaaa 22778726

                                                                            
Query: 498      ctggcatatgtcgctttgacggcctcatgtactgaccaaatgtaatgacatcaacaccag 557
                | |||||||| || || || || |||||||||||||||||||| || |||||||||||||
Sbjct: 22778727 caggcatatgacgtttagatggtctcatgtactgaccaaatgtcattacatcaacaccag 22778786

                                                     
Query: 558      cagctctcaccttttccattgtgctgataacctgatc 594
                |||| || ||||||||| | |||||||||||||||||
Sbjct: 22778787 cagccctaaccttttccgtcgtgctgataacctgatc 22778823



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 80/93 (86%)
 Strand = Plus / Plus

                                                                            
Query: 343      ttttgctcggtcatcttcgatcatggctttgatgtagaactcgcctgctttgtaggagga 402
                |||||||| |||| |||| ||||||||||| ||||||||||| || ||||||||||| ||
Sbjct: 22777702 ttttgctctgtcagcttcaatcatggcttttatgtagaactcaccagctttgtaggaaga 22777761

                                                 
Query: 403      ccgaaccatcggaccagatgcaacataacggaa 435
                 |||||||| || || || || |||||||||||
Sbjct: 22777762 tcgaaccattgggcccgaagccacataacggaa 22777794
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>gb|DQ181624.1| Pisum sativum putative lipoic acid synthase mRNA, complete cds
          Length = 1473

 Score =  131 bits (66), Expect = 3e-27
 Identities = 180/218 (82%)
 Strand = Plus / Minus

                                                                        
Query: 362  atcatggctttgatgtagaactcgcctgctttgtaggaggaccgaaccatcggaccagat 421
            ||||||| ||| || ||||| || ||||| ||||| || ||||  ||||| || ||||||
Sbjct: 1200 atcatggatttaatatagaattcacctgccttgtatgatgaccttaccatgggtccagat 1141

                                                                        
Query: 422  gcaacataacggaatcccatttcaacaccaagggctcggtagttctcaaaggcttcagga 481
            || ||||| || ||||||||||| |  ||||| |   | || ||||||||||| ||||| 
Sbjct: 1140 gccacatagcgaaatcccatttccatgccaagagtctgatacttctcaaaggcctcaggg 1081

                                                                        
Query: 482  gtaatatactcagacactggcatatgtcgctttgacggcctcatgtactgaccaaatgta 541
            |||||||| || || || |||||||| |||||||| || ||||| |||||||||||||| 
Sbjct: 1080 gtaatatattctgatacaggcatatggcgctttgagggtctcatatactgaccaaatgtc 1021

                                                  
Query: 542  atgacatcaacaccagcagctctcaccttttccattgt 579
            || |||||||||||||| ||||||||||| ||||||||
Sbjct: 1020 atcacatcaacaccagctgctctcaccttctccattgt 983
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>gb|DQ181623.1| Pisum sativum putative lipoic acid synthase mRNA, complete cds
          Length = 1543

 Score =  123 bits (62), Expect = 7e-25
 Identities = 179/218 (82%)
 Strand = Plus / Minus

                                                                        
Query: 362  atcatggctttgatgtagaactcgcctgctttgtaggaggaccgaaccatcggaccagat 421
            ||||||| ||| || ||||| || ||||| ||||| || ||||  ||||| || ||||||
Sbjct: 1213 atcatggatttaatatagaattcacctgccttgtatgatgaccttaccatgggtccagat 1154

                                                                        
Query: 422  gcaacataacggaatcccatttcaacaccaagggctcggtagttctcaaaggcttcagga 481
            || ||||| || ||||||||||| |  ||||| |   | || ||||||||||| ||||| 
Sbjct: 1153 gccacatagcgaaatcccatttccatgccaagagtctgatacttctcaaaggcctcaggg 1094

                                                                        
Query: 482  gtaatatactcagacactggcatatgtcgctttgacggcctcatgtactgaccaaatgta 541
            |||||||| || || || |||||||| |||||||| || ||||| | |||||||||||| 
Sbjct: 1093 gtaatatattctgatacaggcatatggcgctttgagggtctcatatgctgaccaaatgtc 1034

                                                  
Query: 542  atgacatcaacaccagcagctctcaccttttccattgt 579
            || |||||||||||||| ||||||||||| ||||||||
Sbjct: 1033 atcacatcaacaccagctgctctcaccttctccattgt 996
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>gb|AC072023.9| Homo sapiens 3 BAC RP11-3J2 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 112405

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 180   ggggcagaagaatttattctctggaa 205
             ||||||| ||||||||||||||||||
Sbjct: 85151 ggggcagcagaatttattctctggaa 85126
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>emb|AL806533.8| Mouse DNA sequence from clone RP23-468I23 on chromosome 4, complete
             sequence
          Length = 201226

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 173   gataaagggggcagaagaattt 194
             ||||||||||||||||||||||
Sbjct: 62120 gataaagggggcagaagaattt 62141
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>gb|AC073626.7| Homo sapiens BAC clone RP11-95P9 from 7, complete sequence
          Length = 136901

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 158   aaatgatttttgaaggataaa 178
             |||||||||||||||||||||
Sbjct: 19196 aaatgatttttgaaggataaa 19216
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>gb|AC117118.4| Rattus norvegicus 1 BAC CH230-161O8 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 216036

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 196   ttctctggaaaagaatagtaa 216
             |||||||||||||||||||||
Sbjct: 26134 ttctctggaaaagaatagtaa 26154
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>ref|XM_735236.1| Plasmodium chabaudi chabaudi hypothetical protein (PC000600.04.0)
           partial mRNA
          Length = 990

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 145 atgaagaaaatgtaaatgatt 165
           |||||||||||||||||||||
Sbjct: 764 atgaagaaaatgtaaatgatt 784
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>gb|AC113603.6| Homo sapiens chromosome 8, clone RP11-101N9, complete sequence
          Length = 161374

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 542    atgacatcaacaccagcagctctca 566
              ||||||||||||||| |||||||||
Sbjct: 148494 atgacatcaacaccaccagctctca 148470
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>gb|AC009840.7| Drosophila melanogaster 3L BAC RP98-2B14 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 194790

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 372   tgatgtagaactcgcctgctttgtaggag 400
             ||||| |||||||||| ||||||||||||
Sbjct: 53795 tgatgaagaactcgccggctttgtaggag 53823
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>gb|AC116154.2| Homo sapiens chromosome 8, clone RP11-927P11, complete sequence
          Length = 196518

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 542    atgacatcaacaccagcagctctca 566
              ||||||||||||||| |||||||||
Sbjct: 156034 atgacatcaacaccaccagctctca 156058
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>gb|AC006233.4| Arabidopsis thaliana chromosome 2 clone F12K2 map B68, complete
             sequence
          Length = 88383

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 141   tagtatgaagaaaatgtaaat 161
             |||||||||||||||||||||
Sbjct: 71947 tagtatgaagaaaatgtaaat 71967
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>ref|NM_079459.2| Drosophila melanogaster Lipoic acid synthase CG5231-RA, transcript
            variant A (Las), mRNA
          Length = 1375

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 372  tgatgtagaactcgcctgctttgtaggag 400
            ||||| |||||||||| ||||||||||||
Sbjct: 1168 tgatgaagaactcgccggctttgtaggag 1140
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>gb|AC068102.5| Homo sapiens chromosome 8, clone RP11-333M8, complete sequence
          Length = 174742

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 542    atgacatcaacaccagcagctctca 566
              ||||||||||||||| |||||||||
Sbjct: 148567 atgacatcaacaccaccagctctca 148543
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>gb|AY058557.1| Drosophila melanogaster LD24887 full length cDNA
          Length = 1378

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 372  tgatgtagaactcgcctgctttgtaggag 400
            ||||| |||||||||| ||||||||||||
Sbjct: 1118 tgatgaagaactcgccggctttgtaggag 1090
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>ref|XM_628554.1| Cryptosporidium parvum Iowa II 2*FF domain protein (phosphopeptide
           binding) (cgd7_3950), partial mRNA
          Length = 1296

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 144 tatgaagaaaatgtaaatgattttt 168
           |||||||||||||| ||||||||||
Sbjct: 433 tatgaagaaaatgtgaatgattttt 457
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>gb|AC013726.7| Homo sapiens BAC clone RP11-400N9 from 2, complete sequence
          Length = 214647

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 554   ccagcagctctcaccttttcc 574
             |||||||||||||||||||||
Sbjct: 91284 ccagcagctctcaccttttcc 91304
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>gb|BT003750.1| Drosophila melanogaster RH26374 full insert cDNA
          Length = 1362

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 372  tgatgtagaactcgcctgctttgtaggag 400
            ||||| |||||||||| ||||||||||||
Sbjct: 1152 tgatgaagaactcgccggctttgtaggag 1124
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>gb|AC084724.6| Homo sapiens BAC clone RP11-613O14 from 4, complete sequence
          Length = 172647

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 149   agaaaatgtaaatgatttttg 169
             |||||||||||||||||||||
Sbjct: 94871 agaaaatgtaaatgatttttg 94851
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>emb|BX647827.1|HSM807973 Homo sapiens mRNA; cDNA DKFZp686G0686 (from clone DKFZp686G0686)
          Length = 6565

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 554  ccagcagctctcaccttttcc 574
            |||||||||||||||||||||
Sbjct: 2318 ccagcagctctcaccttttcc 2298
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>emb|BX248499.12| Zebrafish DNA sequence from clone CH211-284A13 in linkage group 19,
            complete sequence
          Length = 148683

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 155  tgtaaatgatttttgaaggat 175
            |||||||||||||||||||||
Sbjct: 3767 tgtaaatgatttttgaaggat 3747
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>gb|AE003591.4| Drosophila melanogaster chromosome 3L, section 72 of 83 of the complete
              sequence
          Length = 301136

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 372    tgatgtagaactcgcctgctttgtaggag 400
              ||||| |||||||||| ||||||||||||
Sbjct: 103087 tgatgaagaactcgccggctttgtaggag 103115
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>gb|AC163745.4| Pan troglodytes BAC clone CH251-381N15 from chromosome 7, complete
            sequence
          Length = 185876

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 158  aaatgatttttgaaggataaa 178
            |||||||||||||||||||||
Sbjct: 7230 aaatgatttttgaaggataaa 7250
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>emb|BX537649.1|HSM806498 Homo sapiens mRNA; cDNA DKFZp686D1084 (from clone DKFZp686D1084)
          Length = 2045

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 554 ccagcagctctcaccttttcc 574
           |||||||||||||||||||||
Sbjct: 477 ccagcagctctcaccttttcc 457
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>dbj|AP004389.2| Homo sapiens genomic DNA, chromosome 8q23, clone: KB1995B9
          Length = 161124

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 542   atgacatcaacaccagcagctctca 566
             ||||||||||||||| |||||||||
Sbjct: 93422 atgacatcaacaccaccagctctca 93446
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>gb|CP000108.1| Chlorobium chlorochromatii CaD3, complete genome
          Length = 2572079

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 312     actatgaacttgattctgcaacaa 335
               |||||||||||||| |||||||||
Sbjct: 1228190 actatgaacttgatcctgcaacaa 1228167
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>gb|AC131743.3| Mus musculus BAC clone RP23-68K21 from chromosome 13, complete sequence
          Length = 235930

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 199   tctggaaaagaatagtaata 218
             ||||||||||||||||||||
Sbjct: 89557 tctggaaaagaatagtaata 89538
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>ref|XM_535765.2| PREDICTED: Canis familiaris similar to Protein disulfide-isomerase
           A5 precursor (Protein disulfide isomerase-related
           protein) (LOC478589), mRNA
          Length = 2127

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 541 aatgacatcaacaccagcag 560
           ||||||||||||||||||||
Sbjct: 379 aatgacatcaacaccagcag 398
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>gb|AC122935.3| Mus musculus BAC clone RP23-20E4 from chromosome 3, complete sequence
          Length = 191153

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    atccctgctactgttacaat 102
             ||||||||||||||||||||
Sbjct: 96183 atccctgctactgttacaat 96164
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>gb|AC107024.5| Homo sapiens 3 BAC RP11-447J13 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 180216

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 96     ttacaatggatgattatagccata 119
              |||||||||||||||||| |||||
Sbjct: 171854 ttacaatggatgattatatccata 171831
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>ref|XM_651676.1| Entamoeba histolytica HM-1:IMSS DNA polymerase zeta catalytic subunit
            (8.t00042) partial mRNA
          Length = 4158

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 481  agtaatatactcagacactg 500
            ||||||||||||||||||||
Sbjct: 3078 agtaatatactcagacactg 3097
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>ref|XM_721797.1| Plasmodium yoelii yoelii str. 17XNL ferredoxin NADP reductase
           (PY06273) partial mRNA
          Length = 1149

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 144 tatgaagaaaatgtaaatga 163
           ||||||||||||||||||||
Sbjct: 568 tatgaagaaaatgtaaatga 587
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>emb|AL139351.37| Human DNA sequence from clone RP11-321P16 on chromosome 20 Contains
             ESTs, STSs and GSSs, complete sequence
          Length = 97512

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 184   cagaagaatttattctctgg 203
             ||||||||||||||||||||
Sbjct: 20588 cagaagaatttattctctgg 20607
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>gb|AC133680.2| Homo sapiens 3 BAC RP11-102C20 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 130370

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 156   gtaaatgatttttgaaggat 175
             ||||||||||||||||||||
Sbjct: 73932 gtaaatgatttttgaaggat 73913
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>gb|AC097745.8| Rattus norvegicus 3 BAC CH230-11N5 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 238007

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 461    tagttctcaaaggcttcagg 480
              ||||||||||||||||||||
Sbjct: 198195 tagttctcaaaggcttcagg 198214
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>gb|AC161606.5| Mus musculus BAC clone RP23-232M18 from chromosome 14, complete
             sequence
          Length = 223037

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   gaaggataaagggggcagaa 188
             ||||||||||||||||||||
Sbjct: 36955 gaaggataaagggggcagaa 36936
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>emb|AL929356.1|PFA929356 Plasmodium falciparum strain 3D7, chromosome 9; segment 2/5
          Length = 335050

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 145   atgaagaaaatgtaaatgattttt 168
             |||||||||||||||||| |||||
Sbjct: 70158 atgaagaaaatgtaaatgtttttt 70135
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>emb|CR847856.3| Mouse DNA sequence from clone RP23-447G16 on chromosome 2, complete
             sequence
          Length = 34668

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 148   aagaaaatgtaaatgatttt 167
             ||||||||||||||||||||
Sbjct: 23437 aagaaaatgtaaatgatttt 23418
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>emb|BX546460.6| Zebrafish DNA sequence from clone RP71-84C10, complete sequence
          Length = 143360

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 152   aaatgtaaatgatttttgaaggat 175
             |||| |||||||||||||||||||
Sbjct: 60094 aaatttaaatgatttttgaaggat 60117
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>gb|AC010695.5| Drosophila melanogaster 3L BAC RP98-20J4 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 160650

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 543   tgacatcaacaccagcagct 562
             ||||||||||||||||||||
Sbjct: 72828 tgacatcaacaccagcagct 72809
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>gb|AC105925.5| Homo sapiens BAC clone RP11-753I4 from 4, complete sequence
          Length = 136197

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 176   aaagggggcagaagaattta 195
             ||||||||||||||||||||
Sbjct: 13191 aaagggggcagaagaattta 13172
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>gb|AC159825.2| Mus musculus BAC clone RP23-100J21 from chromosome 9, complete sequence
          Length = 209633

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 171    aggataaagggggcagaaga 190
              ||||||||||||||||||||
Sbjct: 147684 aggataaagggggcagaaga 147665
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 293     tggagctggaggtgtgtcaa 312
               ||||||||||||||||||||
Sbjct: 8131611 tggagctggaggtgtgtcaa 8131630
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>gb|AC016526.6|AC016526 Homo sapiens chromosome 14 clone RP11-361H10 map 14q24.3, complete
            sequence
          Length = 179984

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 282  atgtcaatgactggagctgg 301
            ||||||||||||||||||||
Sbjct: 7522 atgtcaatgactggagctgg 7541
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>gb|AC117396.2| Homo sapiens 3 BAC RP11-89E16 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 147103

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 465   tctcaaaggcttcaggagta 484
             ||||||||||||||||||||
Sbjct: 81229 tctcaaaggcttcaggagta 81210
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>dbj|AP005004.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0503B05
          Length = 156814

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 293    tggagctggaggtgtgtcaa 312
              ||||||||||||||||||||
Sbjct: 119804 tggagctggaggtgtgtcaa 119823
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>dbj|BS000068.1| Pan troglodytes chromosome 22 clone:RP43-046F21, map 22, complete
             sequences
          Length = 163689

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 144   tatgaagaaaatgtaaatgatttttgaa 171
             ||||||||||||||| || |||||||||
Sbjct: 72468 tatgaagaaaatgtacataatttttgaa 72495
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>gb|AC008015.5|AC008015 Homo sapiens chromosome 14 BAC 98L12, complete sequence
          Length = 165057

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 282    atgtcaatgactggagctgg 301
              ||||||||||||||||||||
Sbjct: 123314 atgtcaatgactggagctgg 123333
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>gb|AE003530.3| Drosophila melanogaster chromosome 3L, section 55 of 83 of the complete
              sequence
          Length = 279152

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 543    tgacatcaacaccagcagct 562
              ||||||||||||||||||||
Sbjct: 231795 tgacatcaacaccagcagct 231776
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>dbj|AP001681.1| Homo sapiens genomic DNA, chromosome 21q, section 25/105
          Length = 340000

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 144   tatgaagaaaatgtaaatgatttttgaa 171
             ||||||||||||||| || |||||||||
Sbjct: 48243 tatgaagaaaatgtacataatttttgaa 48270
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>dbj|AP001252.2| Homo sapiens genomic DNA, chromosome 21q, clone:RP11-636L7, complete
            sequence
          Length = 91242

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 144  tatgaagaaaatgtaaatgatttttgaa 171
            ||||||||||||||| || |||||||||
Sbjct: 1381 tatgaagaaaatgtacataatttttgaa 1408
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>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 213     gtaatattaccaggatgtaaaaag 236
               |||| |||||||||||||||||||
Sbjct: 5037189 gtaacattaccaggatgtaaaaag 5037166
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>gb|AC116952.4| Mus musculus BAC clone RP23-104A7 from 14, complete sequence
          Length = 210088

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 169    gaaggataaagggggcagaa 188
              ||||||||||||||||||||
Sbjct: 175019 gaaggataaagggggcagaa 175000
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>emb|AL929082.7| Zebrafish DNA sequence from clone CH211-113P18, complete sequence
          Length = 195316

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 223   caggatgtaaaaagacaaac 242
             ||||||||||||||||||||
Sbjct: 37529 caggatgtaaaaagacaaac 37548
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>gb|AF125163.2| Bacteriophage K139, complete genome
          Length = 33106

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 354   catcttcgatcatggctttg 373
             ||||||||||||||||||||
Sbjct: 20338 catcttcgatcatggctttg 20319
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>emb|AL773534.10| Mouse DNA sequence from clone RP23-183O12 on chromosome 2, complete
              sequence
          Length = 216706

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 144    tatgaagaaaatgtaaatga 163
              ||||||||||||||||||||
Sbjct: 121188 tatgaagaaaatgtaaatga 121169
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>gb|AC026673.27| Homo sapiens 3 BAC RP11-56B20 (Roswell Park Cancer Institute Human
            BAC Library) complete sequence
          Length = 26939

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 156  gtaaatgatttttgaaggat 175
            ||||||||||||||||||||
Sbjct: 8496 gtaaatgatttttgaaggat 8515


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,069,883
Number of Sequences: 3902068
Number of extensions: 6069883
Number of successful extensions: 125355
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 125156
Number of HSP's gapped (non-prelim): 198
length of query: 605
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 582
effective length of database: 17,143,297,704
effective search space: 9977399263728
effective search space used: 9977399263728
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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