ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27m18
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_473064.1| Oryza sativa (japonica cultivar-group), predic... 54 7e-04
2emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clon... 54 7e-04
3dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 54 7e-04
4dbj|AB117993.1| Oryza sativa (japonica cultivar-group) bip106 mR... 54 7e-04
5dbj|AK068884.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 7e-04
6dbj|AK068612.1| Oryza sativa (japonica cultivar-group) cDNA clon... 54 7e-04
7emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clon... 54 7e-04
8ref|XM_466696.1| Oryza sativa (japonica cultivar-group), mRNA 50 0.011
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 50 0.011
10dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic D... 50 0.011
11dbj|AB118021.1| Oryza sativa (japonica cultivar-group) bip135 mR... 50 0.011
12dbj|AK072455.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.011
13gb|AY104489.1| Zea mays PCO108349 mRNA sequence 50 0.011
14gb|AC132411.3| Mus musculus BAC clone RP23-352O24 from chromosom... 44 0.65
15gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome 44 0.65
16gb|BC081254.1| Xenopus laevis MGC86272 protein, mRNA (cDNA clone... 42 2.6
17gb|AC092424.4| Homo sapiens BAC clone RP13-572K6 from 7, complet... 42 2.6
18emb|CR407547.14| Zebrafish DNA sequence from clone DKEY-62A12 in... 42 2.6
19gb|AC148836.6| Pan troglodytes BAC clone CH251-2C8 from chromoso... 42 2.6
20gb|AC124306.4| Homo sapiens chromosome 15, clone RP11-275I4, com... 42 2.6
21dbj|AK067965.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.6
22dbj|AK061331.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 2.6 
>ref|XM_473064.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2541

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                       
Query: 322  agccttccttctgcgcttctttccagt 348
            |||||||||||||||||||||||||||
Sbjct: 2532 agccttccttctgcgcttctttccagt 2506
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>emb|AL606594.4| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0029H02,
              complete sequence
          Length = 173171

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                         
Query: 322    agccttccttctgcgcttctttccagt 348
              |||||||||||||||||||||||||||
Sbjct: 135105 agccttccttctgcgcttctttccagt 135131
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                           
Query: 322      agccttccttctgcgcttctttccagt 348
                |||||||||||||||||||||||||||
Sbjct: 25014520 agccttccttctgcgcttctttccagt 25014546
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>dbj|AB117993.1| Oryza sativa (japonica cultivar-group) bip106 mRNA for BRI1-KD
           interacting protein 106, partial cds
          Length = 709

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                      
Query: 322 agccttccttctgcgcttctttccagt 348
           |||||||||||||||||||||||||||
Sbjct: 700 agccttccttctgcgcttctttccagt 674
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>dbj|AK068884.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023002E10, full
            insert sequence
          Length = 2250

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                       
Query: 322  agccttccttctgcgcttctttccagt 348
            |||||||||||||||||||||||||||
Sbjct: 1887 agccttccttctgcgcttctttccagt 1861
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>dbj|AK068612.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013155D11, full
            insert sequence
          Length = 3038

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 27/27 (100%)
 Strand = Plus / Minus

                                       
Query: 322  agccttccttctgcgcttctttccagt 348
            |||||||||||||||||||||||||||
Sbjct: 2685 agccttccttctgcgcttctttccagt 2659
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>emb|AL442115.2| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0711G06, complete
              sequence
          Length = 148644

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                         
Query: 322    agccttccttctgcgcttctttccagt 348
              |||||||||||||||||||||||||||
Sbjct: 142757 agccttccttctgcgcttctttccagt 142783
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>ref|XM_466696.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2870

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 321  aagccttccttctgcgcttctttcc 345
            |||||||||||||||||||||||||
Sbjct: 2529 aagccttccttctgcgcttctttcc 2505



 Score = 48.1 bits (24), Expect = 0.042
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 684  catccttcatagcagttttcccctttgatttgcttg 719
            |||||||| | |||| ||||||||||||||||||||
Sbjct: 2148 catccttccttgcagctttcccctttgatttgcttg 2113



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 321  aagccttccttctgcgcttcttt 343
            |||||||||||||||||||||||
Sbjct: 2589 aagccttccttctgcgcttcttt 2567
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                         
Query: 321      aagccttccttctgcgcttctttcc 345
                |||||||||||||||||||||||||
Sbjct: 24159656 aagccttccttctgcgcttctttcc 24159680



 Score = 48.1 bits (24), Expect = 0.042
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                    
Query: 684      catccttcatagcagttttcccctttgatttgcttg 719
                |||||||| | |||| ||||||||||||||||||||
Sbjct: 24160037 catccttccttgcagctttcccctttgatttgcttg 24160072



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                       
Query: 321      aagccttccttctgcgcttcttt 343
                |||||||||||||||||||||||
Sbjct: 24159596 aagccttccttctgcgcttcttt 24159618
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>dbj|AP005286.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1004_A05
          Length = 174290

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 321    aagccttccttctgcgcttctttcc 345
              |||||||||||||||||||||||||
Sbjct: 118397 aagccttccttctgcgcttctttcc 118421



 Score = 48.1 bits (24), Expect = 0.042
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                  
Query: 684    catccttcatagcagttttcccctttgatttgcttg 719
              |||||||| | |||| ||||||||||||||||||||
Sbjct: 118778 catccttccttgcagctttcccctttgatttgcttg 118813



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                     
Query: 321    aagccttccttctgcgcttcttt 343
              |||||||||||||||||||||||
Sbjct: 118337 aagccttccttctgcgcttcttt 118359
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>dbj|AB118021.1| Oryza sativa (japonica cultivar-group) bip135 mRNA for BRI1-KD
            interacting protein 135, partial cds
          Length = 1850

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 321  aagccttccttctgcgcttctttcc 345
            |||||||||||||||||||||||||
Sbjct: 1481 aagccttccttctgcgcttctttcc 1457



 Score = 48.1 bits (24), Expect = 0.042
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 684  catccttcatagcagttttcccctttgatttgcttg 719
            |||||||| | |||| ||||||||||||||||||||
Sbjct: 1100 catccttccttgcagctttcccctttgatttgcttg 1065



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 321  aagccttccttctgcgcttcttt 343
            |||||||||||||||||||||||
Sbjct: 1541 aagccttccttctgcgcttcttt 1519
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>dbj|AK072455.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023114I24, full
            insert sequence
          Length = 2870

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                     
Query: 321  aagccttccttctgcgcttctttcc 345
            |||||||||||||||||||||||||
Sbjct: 2529 aagccttccttctgcgcttctttcc 2505



 Score = 48.1 bits (24), Expect = 0.042
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 684  catccttcatagcagttttcccctttgatttgcttg 719
            |||||||| | |||| ||||||||||||||||||||
Sbjct: 2148 catccttccttgcagctttcccctttgatttgcttg 2113



 Score = 46.1 bits (23), Expect = 0.16
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 321  aagccttccttctgcgcttcttt 343
            |||||||||||||||||||||||
Sbjct: 2589 aagccttccttctgcgcttcttt 2567
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>gb|AY104489.1| Zea mays PCO108349 mRNA sequence
          Length = 553

 Score = 50.1 bits (25), Expect = 0.011
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 321 aagccttccttctgcgcttctttcc 345
           |||||||||||||||||||||||||
Sbjct: 197 aagccttccttctgcgcttctttcc 173
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>gb|AC132411.3| Mus musculus BAC clone RP23-352O24 from chromosome 1, complete sequence
          Length = 181902

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 698   gttttcccctttgatttgcttg 719
             ||||||||||||||||||||||
Sbjct: 90752 gttttcccctttgatttgcttg 90773
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>gb|AE010299.1| Methanosarcina acetivorans str. C2A, complete genome
          Length = 5751492

 Score = 44.1 bits (22), Expect = 0.65
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 334   gcgcttctttccagttgaagac 355
             ||||||||||||||||||||||
Sbjct: 56117 gcgcttctttccagttgaagac 56096
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>gb|BC081254.1| Xenopus laevis MGC86272 protein, mRNA (cDNA clone MGC:86272
            IMAGE:7019286), complete cds
          Length = 8189

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 11   tataaatagaagatgaataag 31
            |||||||||||||||||||||
Sbjct: 6258 tataaatagaagatgaataag 6278
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>gb|AC092424.4| Homo sapiens BAC clone RP13-572K6 from 7, complete sequence
          Length = 82435

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 639  tgacttccttcttaatctcgc 659
            |||||||||||||||||||||
Sbjct: 5814 tgacttccttcttaatctcgc 5794
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>emb|CR407547.14| Zebrafish DNA sequence from clone DKEY-62A12 in linkage group 9,
             complete sequence
          Length = 204067

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 696   cagttttcccctttgatttgc 716
             |||||||||||||||||||||
Sbjct: 22690 cagttttcccctttgatttgc 22710
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>gb|AC148836.6| Pan troglodytes BAC clone CH251-2C8 from chromosome 7, complete
             sequence
          Length = 219717

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 639   tgacttccttcttaatctcgc 659
             |||||||||||||||||||||
Sbjct: 53775 tgacttccttcttaatctcgc 53755
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>gb|AC124306.4| Homo sapiens chromosome 15, clone RP11-275I4, complete sequence
          Length = 160846

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 581   ctgtctttagctaaatcatccttcatctt 609
             ||||||| ||||||| |||||||||||||
Sbjct: 84233 ctgtcttcagctaaaacatccttcatctt 84205
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>dbj|AK067965.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013124G04, full
           insert sequence
          Length = 1354

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 633 tttccttgacttccttcttaatctc 657
           ||||||||| |||||||||||||||
Sbjct: 487 tttccttgatttccttcttaatctc 463
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>dbj|AK061331.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-303-A06, full
           insert sequence
          Length = 1287

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 633 tttccttgacttccttcttaatctc 657
           ||||||||| |||||||||||||||
Sbjct: 389 tttccttgatttccttcttaatctc 365


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,044,309
Number of Sequences: 3902068
Number of extensions: 6044309
Number of successful extensions: 111148
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 111017
Number of HSP's gapped (non-prelim): 131
length of query: 740
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 717
effective length of database: 17,143,297,704
effective search space: 12291744453768
effective search space used: 12291744453768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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