ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27m14 |
|---|---|
| Clone Library Name | barley_pub |
>VCLA_GOSHI (P09799) Vicilin GC72-A precursor (Alpha-globulin A)| Length = 605 Score = 35.4 bits (80), Expect = 0.25 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%) Frame = -3 Query: 624 DQSNDSCDHKCQ-HHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKE 463 D+ C +CQ + P RK+QCV EC + P + E K WR+ +E Sbjct: 119 DKQFKECQQRCQWQEQRPERKQQCVKECREQYQEDPWKGERENK---WREEEEEE 170 Score = 30.8 bits (68), Expect = 6.2 Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 7/61 (11%) Frame = -3 Query: 606 CDHKCQHHKVPAR---KKQCVDECHRREHHHPSRA--ACERKCSHWRD--PTRKERCVQT 448 C CQ + R ++ C ++ +++ P + C+++C W++ P RK++CV+ Sbjct: 87 CRQHCQQEERRLRPHCEQSCREQYEKQQQQQPDKQFKECQQRCQ-WQEQRPERKQQCVKE 145 Query: 447 C 445 C Sbjct: 146 C 146
>ROM1_YEAST (P53046) RHO1 GDP-GTP exchange protein 1 (Protein kinase C| suppressor SKC1) Length = 1155 Score = 34.7 bits (78), Expect = 0.43 Identities = 22/90 (24%), Positives = 40/90 (44%), Gaps = 10/90 (11%) Frame = -3 Query: 708 HALRXQPRTWAAVTMSSS---------APTPKEVEVDDQSNDSCDHKCQHHKVPARKKQC 556 H L+ P + ++SS +PT K++ ++D + + C P++K+ Sbjct: 85 HQLKASPVLHISTNLNSSPQSFTGDQISPTNKKISINDSTRQDKGNSCTTTSSPSQKRSN 144 Query: 555 VDECHRREHHHPSRAACERKC-SHWRDPTR 469 V H R+H PS + + SH DP + Sbjct: 145 VLLPHVRKHSSPSLLSFSKNSGSHMGDPNQ 174
>MMPS3_MYCTU (P65378) Putative membrane protein mmpS3| Length = 299 Score = 33.9 bits (76), Expect = 0.73 Identities = 21/74 (28%), Positives = 31/74 (41%) Frame = +3 Query: 459 TVPSLSGLSNGYTSSRKPPCSGDDAPVCGTRPRTASSSPELYDVGTCGRTSRCSDHRPPP 638 T P S L+ G T+S PP + P + P ++ T T + PPP Sbjct: 122 TRPHTSKLATGDTTSSAPPVQDEITTTKPAPPPPPPAPPPTTEIPTATETQTVTVTPPPP 181 Query: 639 PSAWGRSMTSSPPP 680 P + T++PPP Sbjct: 182 PPP---ATTTAPPP 192
>MMPS3_MYCBO (P65379) Putative membrane protein mmpS3| Length = 299 Score = 33.9 bits (76), Expect = 0.73 Identities = 21/74 (28%), Positives = 31/74 (41%) Frame = +3 Query: 459 TVPSLSGLSNGYTSSRKPPCSGDDAPVCGTRPRTASSSPELYDVGTCGRTSRCSDHRPPP 638 T P S L+ G T+S PP + P + P ++ T T + PPP Sbjct: 122 TRPHTSKLATGDTTSSAPPVQDEITTTKPAPPPPPPAPPPTTEIPTATETQTVTVTPPPP 181 Query: 639 PSAWGRSMTSSPPP 680 P + T++PPP Sbjct: 182 PPP---ATTTAPPP 192
>BCL9_HUMAN (O00512) B-cell lymphoma 9 protein (Bcl-9) (Legless homolog)| Length = 1426 Score = 33.9 bits (76), Expect = 0.73 Identities = 23/61 (37%), Positives = 28/61 (45%) Frame = +3 Query: 465 PSLSGLSNGYTSSRKPPCSGDDAPVCGTRPRTASSSPELYDVGTCGRTSRCSDHRPPPPS 644 PSL S G+TSS KPP P P T +S L +V + G PPPP+ Sbjct: 924 PSLPAPSPGWTSSPKPPLQSPGIPPNHKAPLTMASPAMLGNVESGG---------PPPPT 974 Query: 645 A 647 A Sbjct: 975 A 975
>BCL9_MOUSE (Q9D219) B-cell lymphoma 9 protein (Bcl-9)| Length = 1425 Score = 33.5 bits (75), Expect = 0.95 Identities = 23/61 (37%), Positives = 27/61 (44%) Frame = +3 Query: 465 PSLSGLSNGYTSSRKPPCSGDDAPVCGTRPRTASSSPELYDVGTCGRTSRCSDHRPPPPS 644 PSL S G+TSS KPP P P T +S L V + G PPPP+ Sbjct: 923 PSLPAPSPGWTSSPKPPLQSPGIPPNHKAPLTMASPAMLGSVESGG---------PPPPT 973 Query: 645 A 647 A Sbjct: 974 A 974
>VCLB_GOSHI (P09801) Vicilin C72 precursor (Alpha-globulin B)| Length = 588 Score = 33.1 bits (74), Expect = 1.2 Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 5/54 (9%) Frame = -3 Query: 642 KEVEVDDQSNDSCDHKCQHH-----KVPARKKQCVDECHRREHHHPSRAACERK 496 K E + Q + +CQ H + P RK+QCV EC R +P R E + Sbjct: 111 KRFEQEQQQSQRQFQECQQHCHQQEQRPERKQQCVRECRERYQENPWRREREEE 164
>MYLK_CHICK (P11799) Myosin light chain kinase, smooth muscle and non-muscle| isozymes (EC 2.7.11.18) (MLCK) [Contains: Telokin] Length = 1906 Score = 33.1 bits (74), Expect = 1.2 Identities = 25/86 (29%), Positives = 36/86 (41%), Gaps = 1/86 (1%) Frame = -3 Query: 846 KSGEKEXVRRRVPQPGSIITQSRASCEXKCSH*RDPAKXGTVRAAVHALRXQPRTWAAVT 667 K K + +VP P +T R+ K + PA+ G+ R A T Sbjct: 972 KGTPKTPLPEKVPPPKPAVTDFRSVLGAKK---KPPAENGSASTPAPNARAGSEAQNA-T 1027 Query: 666 MSSSAPTPKEVEVDDQSND-SCDHKC 592 +S AP PK V ++ ND C+H C Sbjct: 1028 PNSEAPAPKPVVKKEEKNDRKCEHGC 1053
>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system| defective) (Homeobox protein NK-2) Length = 723 Score = 33.1 bits (74), Expect = 1.2 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 10/58 (17%) Frame = -3 Query: 663 SSSAPTPKEVEVDDQSNDS--------CDHKC--QHHKVPARKKQCVDECHRREHHHP 520 S+ +PTP V D+ N S DH +HH P+ +Q H ++HHHP Sbjct: 252 SALSPTPAGVSADEHHNGSGTGGGAGEADHHSTTEHHAPPSHPQQ--QHPHHQQHHHP 307
>LHX8_MOUSE (O35652) LIM/homeobox protein Lhx8 (LIM homeodomain Lhx7) (L3)| Length = 367 Score = 32.7 bits (73), Expect = 1.6 Identities = 17/59 (28%), Positives = 27/59 (45%) Frame = +1 Query: 85 SSCGKHT*QTNLLKEGKGTEFHGALF*ERHRQSCCYCKLLVFYSHAFAVIASKTYTRAY 261 S CG+H T+ ++ KG +H A F +C CK + FA++ K R + Sbjct: 158 SRCGRHIHSTDWVRRAKGNVYHLACF------ACFSCKRQLSTGEEFALVEEKVLCRVH 210
>WASIP_MOUSE (Q8K1I7) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) Length = 493 Score = 32.7 bits (73), Expect = 1.6 Identities = 23/60 (38%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Frame = +3 Query: 510 PPCSGDDAPVCGTRPRT-ASSSPELYDVGTCGRTSRCSDHRPPPP--SAWGRSMTSSPPP 680 PP S D+ P R + SS+P L G G RPPPP GRS PPP Sbjct: 314 PPASNDEIPRLPQRNLSLTSSAPPLPSPGRSGPLPPPPSERPPPPVRDPPGRSGPLPPPP 373
>ACH91_ONCMY (Q8JFN7) Neuronal acetylcholine receptor protein, alpha-9-I subunit| precursor (Nicotinic acetylcholine receptor subunit alpha 9-I) (NACHR alpha 9-I) Length = 572 Score = 32.3 bits (72), Expect = 2.1 Identities = 18/62 (29%), Positives = 27/62 (43%) Frame = -3 Query: 666 MSSSAPTPKEVEVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSH 487 ++ P PKE ++ S +C C HHK Q + C R + RA C K + Sbjct: 487 LNEPLPYPKEKHLNPASAPACSCPCPHHKQVVYNIQYIANCFREQ-----RATC-AKGAE 540 Query: 486 WR 481 W+ Sbjct: 541 WK 542
>MST2_DROHY (Q08696) Axoneme-associated protein mst101(2)| Length = 1391 Score = 32.3 bits (72), Expect = 2.1 Identities = 13/56 (23%), Positives = 26/56 (46%) Frame = -3 Query: 606 CDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKERCVQTCMR 439 C+ + + K A KK+C +E +RE + C ++ T K++C + + Sbjct: 1112 CEERAKKEKEAAEKKRC-EEAAKREKEAAEKKKCAEAAKKEKEATEKQKCAEAAKK 1166 Score = 31.2 bits (69), Expect = 4.7 Identities = 14/65 (21%), Positives = 28/65 (43%) Frame = -3 Query: 633 EVDDQSNDSCDHKCQHHKVPARKKQCVDECHRREHHHPSRAACERKCSHWRDPTRKERCV 454 E + C+ + + K A KKQC +E ++E + CE ++ K++C Sbjct: 1087 EKEAAEKKQCEERAKKLKEAAEKKQC-EERAKKEKEAAEKKRCEEAAKREKEAAEKKKCA 1145 Query: 453 QTCMR 439 + + Sbjct: 1146 EAAKK 1150
>WASIP_RAT (Q6IN36) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) Length = 487 Score = 30.4 bits (67), Expect = 8.1 Identities = 22/60 (36%), Positives = 26/60 (43%), Gaps = 3/60 (5%) Frame = +3 Query: 510 PPCSGDDAPVCGTRPRTASS-SPELYDVGTCGRTSRCSDHRPPPP--SAWGRSMTSSPPP 680 PP S D+ P R + +S +P L G G RPPPP GRS PPP Sbjct: 308 PPTSSDEIPRLPQRNLSLTSPTPPLPSPGRSGPLPPPPTERPPPPVRDPPGRSGPLPPPP 367
>ADA19_HUMAN (Q9H013) ADAM 19 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase domain 19) (Meltrin beta) (Metalloprotease and disintegrin dentritic antigen marker) (MADDAM) Length = 956 Score = 30.4 bits (67), Expect = 8.1 Identities = 18/52 (34%), Positives = 29/52 (55%) Frame = +2 Query: 128 KEKEQSSMELSSRRGIANHAATASYWSFILTPLPS*LARRIRGRIYRSVYTR 283 +E E SS+ LS+ RGI +S S+++ PLP + + IYRS + + Sbjct: 121 RETELSSVTLSTCRGIRGLITVSSNLSYVIEPLPDSKGQHL---IYRSEHLK 169
>JAG2_HUMAN (Q9Y219) Jagged-2 precursor (Jagged2) (HJ2)| Length = 1238 Score = 30.4 bits (67), Expect = 8.1 Identities = 17/53 (32%), Positives = 20/53 (37%), Gaps = 5/53 (9%) Frame = +3 Query: 540 CGTRPRTASSSPELYDVGTCGRTSRCSDHRP-----PPPSAWGRSMTSSPPPT 683 CG +P + PE C RC + P PP AWG PP T Sbjct: 906 CGWKPCLLAGQPEALSA-QCPLGQRCLEKAPGQCLRPPCEAWGECGAEEPPST 957 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 104,327,516 Number of Sequences: 219361 Number of extensions: 1996033 Number of successful extensions: 6490 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 5736 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6424 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 10401601875 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
