ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27m09 |
|---|---|
| Clone Library Name | barley_pub |
>POL_MLVMO (P03355) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1199 Score = 33.9 bits (76), Expect = 0.42 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Frame = -2 Query: 602 GTSGGQAVLISGSSNGKS-NMSVLPEPYATIGAMTHSFIRAVECEPRTTYGR-LLTSMRA 429 G ++ + G++ GK + + + G +THSF+ +C P GR LLT ++A Sbjct: 40 GPLSDKSAWVQGATGGKRYRWTTDRKVHLATGKVTHSFLHVPDC-PYPLLGRDLLTKLKA 98 Query: 428 IMRDSGGNCNLQGPIG 381 + G + GP+G Sbjct: 99 QIHFEGSGAQVMGPMG 114
>POL_MLVRD (P11227) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1196 Score = 33.5 bits (75), Expect = 0.55 Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%) Frame = -2 Query: 602 GTSGGQAVLISGSSNGKS-NMSVLPEPYATIGAMTHSFIRAVECEPRTTYGR-LLTSMRA 429 G ++ + G++ GK + + + G +THSF+ +C P GR LLT ++A Sbjct: 40 GPLSDRSAWVQGATGGKRYRWTTDRKVHLATGKVTHSFLHVPDC-PYPLLGRDLLTKLKA 98 Query: 428 IMRDSGGNCNLQGPIG 381 + G + GP+G Sbjct: 99 QIHFKGSGAQIVGPMG 114
>TRY1_CHICK (Q90627) Trypsin I-P1 precursor (EC 3.4.21.4)| Length = 248 Score = 33.5 bits (75), Expect = 0.55 Identities = 28/103 (27%), Positives = 44/103 (42%) Frame = -2 Query: 623 PMTGACKGTSGGQAVLISGSSNGKSNMSVLPEPYATIGAMTHSFIRAVECEPRTTYGRLL 444 P+ +C + G LISG N S+ S+ P+ + A S + P GR+ Sbjct: 129 PLPTSC--VTAGTTCLISGWGNTLSSGSLYPDVLQCLNAPVLSSSQCSSAYP----GRIT 182 Query: 443 TSMRAIMRDSGGNCNLQGPIGGSIRRVGNFSGVEEPQLSSAYK 315 ++M I +GG + QG GG + G G+ + A K Sbjct: 183 SNMICIGYLNGGKDSCQGDSGGPVVCNGQLQGIVSWGIGCAQK 225
>POL_MLVFP (P26808) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1204 Score = 32.7 bits (73), Expect = 0.94 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Frame = -2 Query: 602 GTSGGQAVLISGSSNGKS-NMSVLPEPYATIGAMTHSFIRAVECEPRTTYGR-LLTSMRA 429 G ++ + G++ GK + + G +THSF+ +C P GR LLT ++A Sbjct: 45 GPLSDKSAWVQGATGGKRYRWTTDRRVHLATGKVTHSFLHVPDC-PYPLLGRDLLTKLKA 103 Query: 428 IMRDSGGNCNLQGPIG 381 + G + GP+G Sbjct: 104 QIHFEGSGAQVVGPMG 119
>POL_MLVFF (P26809) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1204 Score = 32.7 bits (73), Expect = 0.94 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Frame = -2 Query: 602 GTSGGQAVLISGSSNGKS-NMSVLPEPYATIGAMTHSFIRAVECEPRTTYGR-LLTSMRA 429 G ++ + G++ GK + + G +THSF+ +C P GR LLT ++A Sbjct: 45 GPLSDKSAWVQGATGGKRYRWTTDRRVHLATGKVTHSFLHVPDC-PYPLLGRDLLTKLKA 103 Query: 428 IMRDSGGNCNLQGPIG 381 + G + GP+G Sbjct: 104 QIHFEGSGAQVVGPMG 119
>POL_MLVF5 (P26810) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1204 Score = 32.7 bits (73), Expect = 0.94 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Frame = -2 Query: 602 GTSGGQAVLISGSSNGKS-NMSVLPEPYATIGAMTHSFIRAVECEPRTTYGR-LLTSMRA 429 G ++ + G++ GK + + G +THSF+ +C P GR LLT ++A Sbjct: 45 GPLSDKSAWVQGATGGKRYRWTTDRRVHLATGKVTHSFLHVPDC-PYPLLGRHLLTKLKA 103 Query: 428 IMRDSGGNCNLQGPIG 381 + G + GP+G Sbjct: 104 QIHFEGSGAQVVGPMG 119
>POL_FLV (P10273) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT)] (Fragment) Length = 128 Score = 32.7 bits (73), Expect = 0.94 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Frame = -2 Query: 602 GTSGGQAVLISGSSNGKS-NMSVLPEPYATIGAMTHSFIRAVECEPRTTYGR-LLTSMRA 429 G + L+ G++ K+ + G +THSF+ EC P GR LLT ++A Sbjct: 43 GPLSDRTALVQGATGSKNYRWTTDRRVQLATGKVTHSFLYVPEC-PYPLLGRDLLTKLKA 101 Query: 428 IMRDSGGNCNLQGPIG 381 + +G N+ GP G Sbjct: 102 QIHFTGEGANVVGPRG 117
>TRY2_CHICK (Q90628) Trypsin I-P38 precursor (EC 3.4.21.4)| Length = 248 Score = 32.0 bits (71), Expect = 1.6 Identities = 26/92 (28%), Positives = 40/92 (43%) Frame = -2 Query: 623 PMTGACKGTSGGQAVLISGSSNGKSNMSVLPEPYATIGAMTHSFIRAVECEPRTTYGRLL 444 P+ +C + G LISG N S+ S+ P+ + A S + P GR+ Sbjct: 129 PLPTSC--VTAGTTCLISGWGNTLSSGSLYPDVLQCLNAPVLSSSQCSSAYP----GRIT 182 Query: 443 TSMRAIMRDSGGNCNLQGPIGGSIRRVGNFSG 348 ++M I +GG + QG GG + G G Sbjct: 183 SNMICIGYLNGGKDSCQGDSGGPVVCNGQLQG 214
>POL_MLVAV (P03356) Pol polyprotein [Contains: Protease (EC 3.4.23.-); Reverse| transcriptase/ribonuclease H (EC 2.7.7.49) (EC 3.1.26.4) (RT); Integrase (IN)] Length = 1196 Score = 31.6 bits (70), Expect = 2.1 Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%) Frame = -2 Query: 602 GTSGGQAVLISGSSNGKS-NMSVLPEPYATIGAMTHSFIRAVECEPRTTYGR-LLTSMRA 429 G ++ + G++ GK + + + G +THSF+ +C P GR LLT ++A Sbjct: 40 GPLSDRSAWVQGATGGKRYRWTTDRKVHLATGKVTHSFLHVPDC-PYPLLGRDLLTKLKA 98 Query: 428 IMRDSGGNCNLQGPIG 381 + G + GP G Sbjct: 99 QIHFEGSGAQVVGPKG 114
>DHE3_DROME (P54385) Glutamate dehydrogenase, mitochondrial precursor (EC| 1.4.1.3) (GDH) Length = 562 Score = 31.6 bits (70), Expect = 2.1 Identities = 25/94 (26%), Positives = 42/94 (44%), Gaps = 11/94 (11%) Frame = -2 Query: 587 QAVLISGSSNGKS-----------NMSVLPEPYATIGAMTHSFIRAVECEPRTTYGRLLT 441 QA +I+ ++NG + N+ V+P+ Y G +T SF ++ +YGRL Sbjct: 389 QAKIIAEAANGPTTPAADKILIDRNILVIPDLYINAGGVTVSFFEWLKNLNHVSYGRL-- 446 Query: 440 SMRAIMRDSGGNCNLQGPIGGSIRRVGNFSGVEE 339 + N +L + SI R+ N V+E Sbjct: 447 ---TFKYERESNYHLLASVQQSIERIINDESVQE 477
>NIC1_SCHPO (O74869) High-affinity nickel transport protein nic1| Length = 405 Score = 30.8 bits (68), Expect = 3.6 Identities = 18/59 (30%), Positives = 31/59 (52%) Frame = -2 Query: 191 IMGRLIYYSMLLAAIVCVTMYHLTCRHAIKNEHCIAHTRLSRILFSTVLYLTVIGCWVS 15 ++ R ++ S+LL+ + L RHA+ +H A L+R L ST ++ +G W S Sbjct: 57 LVNRSLFLSVLLS-------WTLGLRHALDADHITAIDNLTRRLLSTDKPMSTVGTWFS 108
>R1AB_PEDV7 (Q91AV2) Replicase polyprotein 1ab (pp1ab) (ORF1ab polyprotein)| [Includes: Replicase polyprotein 1a (pp1a) (ORF1a)] [Contains: p9; p87; p195 (EC 3.4.22.-) (Papain-like proteinases 1/2) (PL1-PRO/PL2-PRO); Peptide HD2; Unknown protein 1; 3C-like Length = 6781 Score = 30.4 bits (67), Expect = 4.6 Identities = 17/48 (35%), Positives = 21/48 (43%), Gaps = 5/48 (10%) Frame = -2 Query: 131 YHLTCRHAIKNEHCIAHTRLSRILFSTVLYLTVIG-----CWVSCRPL 3 YH C +E CI H LFST + +T G CW+ PL Sbjct: 4389 YHPNCVDC-SDEQCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPL 4435
>PURL_AGRT5 (Q8UEB0) Phosphoribosylformylglycinamidine synthase II (EC 6.3.5.3)| (FGAM synthase II) Length = 775 Score = 30.0 bits (66), Expect = 6.1 Identities = 16/44 (36%), Positives = 24/44 (54%) Frame = -2 Query: 446 LTSMRAIMRDSGGNCNLQGPIGGSIRRVGNFSGVEEPQLSSAYK 315 L +RA + +G +C L G GGS ++G VE +L AY+ Sbjct: 716 LDKVRAAAKAAGVSCPLIGTTGGSTVKLGTARAVEIKELHLAYE 759 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,301,218 Number of Sequences: 219361 Number of extensions: 1396419 Number of successful extensions: 3527 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3443 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3527 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5995743495 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
