ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27m08 |
|---|---|
| Clone Library Name | barley_pub |
>RBP1B_ARATH (Q8RWG8) Ran-binding protein 1 homolog b| Length = 217 Score = 99.4 bits (246), Expect = 9e-21 Identities = 48/75 (64%), Positives = 58/75 (77%) Frame = -1 Query: 683 MQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAKDEDGES 504 +QEHAG+DKSCVWHA DF+DGELKDE+F IRF +VENCK F E+AES ++E ES Sbjct: 111 VQEHAGNDKSCVWHARDFSDGELKDELFCIRFASVENCKAFMQKFKEVAES--EEEKEES 168 Query: 503 VEGSSAAGLLEKLSV 459 + S AGLLEKL+V Sbjct: 169 KDASDTAGLLEKLTV 183
>RBP1A_ARATH (Q9LMK7) Ran-binding protein 1 homolog a (Ran-binding protein| siRanBP) Length = 228 Score = 95.9 bits (237), Expect = 1e-19 Identities = 45/75 (60%), Positives = 57/75 (76%) Frame = -1 Query: 683 MQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAKDEDGES 504 +QEH G++KSCVWHA DFADGELKDE+F IRF ++ENCK F E+AES ++E ES Sbjct: 109 VQEHVGNEKSCVWHARDFADGELKDELFCIRFASIENCKTFMQKFKEVAES--EEEKEES 166 Query: 503 VEGSSAAGLLEKLSV 459 + + AGLLEKL+V Sbjct: 167 KDAADTAGLLEKLTV 181
>RBP1C_ARATH (P92985) Ran-binding protein 1 homolog c| Length = 219 Score = 94.7 bits (234), Expect = 2e-19 Identities = 44/75 (58%), Positives = 57/75 (76%) Frame = -1 Query: 683 MQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAKDEDGES 504 +QEH+G++KSC+WHA DF+DGELKDE+F IRF ++ENCK F + EIAES + ES Sbjct: 108 VQEHSGNEKSCLWHATDFSDGELKDELFCIRFASIENCKTFMEKFTEIAES--QQVGKES 165 Query: 503 VEGSSAAGLLEKLSV 459 +G AAGL+E LSV Sbjct: 166 TQGDEAAGLIENLSV 180
>RANG_HUMAN (P43487) Ran-specific GTPase-activating protein (Ran-binding| protein 1) (RanBP1) Length = 201 Score = 49.3 bits (116), Expect = 1e-05 Identities = 33/80 (41%), Positives = 44/80 (55%), Gaps = 5/80 (6%) Frame = -1 Query: 683 MQEHAGSDKSCVWHA-ADFADGELKDEMFAIRFGTVENCKKFKDLVD----EIAESLAKD 519 ++ +AGSD++ VW+ ADFAD K E+ AIRF EN +KFK + EI E K Sbjct: 110 LKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEEREKKA 169 Query: 518 EDGESVEGSSAAGLLEKLSV 459 G++ A LE LSV Sbjct: 170 GSGKNDHAEKVAEKLEALSV 189
>RANG_MOUSE (P34022) Ran-specific GTPase-activating protein (Ran-binding| protein 1) (RANBP1) (HpaII tiny fragments locus 9a protein) Length = 203 Score = 49.3 bits (116), Expect = 1e-05 Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 4/79 (5%) Frame = -1 Query: 683 MQEHAGSDKSCVWHA-ADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAKDE--- 516 ++ +AGSD++ VW+ ADFAD K E+ AIRF EN +KFK +E + + + E Sbjct: 110 LKPNAGSDRAWVWNTHADFADECPKPELLAIRFLNAENAQKFKTKFEECRKEIEEREKKG 169 Query: 515 DGESVEGSSAAGLLEKLSV 459 G++ A LE LSV Sbjct: 170 PGKNDNAEKVAEKLEALSV 188
>RBP2_HUMAN (P49792) Ran-binding protein 2 (RanBP2) (Nuclear pore complex protein| Nup358) (Nucleoporin Nup358) (358 kDa nucleoporin) (P270) Length = 3224 Score = 47.4 bits (111), Expect = 4e-05 Identities = 26/55 (47%), Positives = 34/55 (61%) Frame = -1 Query: 686 RMQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAK 522 ++ +AGSD+S VWHA D+AD K E AIRF T E FK +E A+S+ K Sbjct: 1253 KLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCKFEE-AQSILK 1306 Score = 44.3 bits (103), Expect = 4e-04 Identities = 22/52 (42%), Positives = 31/52 (59%) Frame = -1 Query: 665 SDKSCVWHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAKDEDG 510 S+ + VW A+D+ADGE K E A+RF T E FK +E ++L K + G Sbjct: 2999 SNNALVWTASDYADGEAKVEQLAVRFKTKEVADCFKKTFEECQQNLMKLQKG 3050 Score = 43.1 bits (100), Expect = 8e-04 Identities = 21/55 (38%), Positives = 30/55 (54%) Frame = -1 Query: 683 MQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAKD 519 +Q G+++ +W A DFADGE K E A+RF + FK + DE + KD Sbjct: 2392 LQNMKGTERVWLWTACDFADGERKVEHLAVRFKLQDVADSFKKIFDEAKTAQEKD 2446 Score = 41.2 bits (95), Expect = 0.003 Identities = 18/43 (41%), Positives = 29/43 (67%) Frame = -1 Query: 671 AGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKKFKDLVDE 543 +GSD++ +W A+DF+DG+ K E A +F T E ++FK +E Sbjct: 2099 SGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEE 2141
>RBP2_MOUSE (Q9ERU9) Ran-binding protein 2 (RanBP2)| Length = 3053 Score = 46.2 bits (108), Expect = 1e-04 Identities = 25/55 (45%), Positives = 34/55 (61%) Frame = -1 Query: 686 RMQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAK 522 ++ +AGSD+S VWHA D+AD K E AIRF T E FK +E A+++ K Sbjct: 1247 KLTPNAGSDRSFVWHALDYADELPKPEQLAIRFKTPEEAALFKCKFEE-AQNILK 1300 Score = 44.7 bits (104), Expect = 3e-04 Identities = 20/54 (37%), Positives = 34/54 (62%) Frame = -1 Query: 665 SDKSCVWHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAKDEDGES 504 S+ + VW A+D+ADGE K E A+RF T E + FK ++ +++ K ++G + Sbjct: 2828 SNNALVWTASDYADGEAKVEQLAVRFKTKEMTESFKKKFEDSQQNIIKLQNGHT 2881 Score = 43.9 bits (102), Expect = 5e-04 Identities = 22/55 (40%), Positives = 30/55 (54%) Frame = -1 Query: 683 MQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAKD 519 +Q G+++ VW A DFADGE K E A+RF + FK + DE + KD Sbjct: 2229 LQTMKGTERVWVWTACDFADGERKIEHLAVRFKLQDVADSFKKIFDEAKTAQEKD 2283 Score = 41.2 bits (95), Expect = 0.003 Identities = 18/43 (41%), Positives = 29/43 (67%) Frame = -1 Query: 671 AGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKKFKDLVDE 543 +GSD++ +W A+DF+DG+ K E A +F T E ++FK +E Sbjct: 1936 SGSDRAWMWLASDFSDGDAKLEQLAAKFKTPELAEEFKQKFEE 1978
>RBP2_BOVIN (P48820) Ran-binding protein 2 (RanBP2) (Nuclear pore complex protein| Nup358) (Nucleoporin Nup358) (358 kDa nucleoporin) (P270) (Fragment) Length = 1085 Score = 46.2 bits (108), Expect = 1e-04 Identities = 22/53 (41%), Positives = 32/53 (60%) Frame = -1 Query: 665 SDKSCVWHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAKDEDGE 507 S+ + VW A+D+ADGE K E A+RF T E FK +E ++L K + G+ Sbjct: 860 SNNALVWTASDYADGEAKVEQLAVRFKTKEMADCFKKKFEECQQNLLKPQKGQ 912 Score = 43.9 bits (102), Expect = 5e-04 Identities = 22/55 (40%), Positives = 30/55 (54%) Frame = -1 Query: 683 MQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAKD 519 +Q G+++ VW A DFADGE K E A+RF + FK + DE + KD Sbjct: 257 LQNMKGTERVWVWTACDFADGERKIEHLAVRFKLQDVADSFKKIFDEAKVAQEKD 311
>RBP23_HUMAN (O14715) Ran-binding protein 2-like 3 (RanBP2L3) (Fragment)| Length = 755 Score = 44.3 bits (103), Expect = 4e-04 Identities = 22/55 (40%), Positives = 30/55 (54%) Frame = -1 Query: 683 MQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAKD 519 +Q G+++ VW A DFADGE K E A+RF + FK + DE + KD Sbjct: 406 LQNMKGTERVWVWTACDFADGERKVEHLAVRFKLQDVADSFKKIFDEAKTAQEKD 460 Score = 41.6 bits (96), Expect = 0.002 Identities = 18/43 (41%), Positives = 29/43 (67%) Frame = -1 Query: 671 AGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKKFKDLVDE 543 +GSD++ +W A+DF+DG+ K E A +F T E ++FK +E Sbjct: 113 SGSDRAWMWSASDFSDGDAKLERLAAKFKTPELAEEFKQKFEE 155
>RGPD8_HUMAN (Q99666) RANBP2-like and GRIP domain-containing protein 8| (Ran-binding protein 2-like 1) (RanBP2L1) (Sperm membrane protein BS-63) Length = 1765 Score = 44.3 bits (103), Expect = 4e-04 Identities = 22/55 (40%), Positives = 30/55 (54%) Frame = -1 Query: 683 MQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAKD 519 +Q G+++ VW A DFADGE K E A+RF + FK + DE + KD Sbjct: 1416 LQNMKGTERVWVWTACDFADGERKVEHLAVRFKLQDVADSFKKIFDEAKTAQEKD 1470 Score = 38.9 bits (89), Expect = 0.015 Identities = 17/43 (39%), Positives = 28/43 (65%) Frame = -1 Query: 671 AGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKKFKDLVDE 543 +GSD++ +W A+ F+DG+ K E A +F T E ++FK +E Sbjct: 1123 SGSDRAWMWSASHFSDGDAKLERLAAKFKTPELAEEFKQKFEE 1165
>RBP22_HUMAN (Q53T03) Ran-binding protein 2-like 2 (RanBP2L2)| Length = 1765 Score = 44.3 bits (103), Expect = 4e-04 Identities = 22/55 (40%), Positives = 30/55 (54%) Frame = -1 Query: 683 MQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAKD 519 +Q G+++ VW A DFADGE K E A+RF + FK + DE + KD Sbjct: 1416 LQNMKGTERVWVWTACDFADGERKVEHLAVRFKLQDVADSFKKIFDEAKTAQEKD 1470 Score = 41.6 bits (96), Expect = 0.002 Identities = 18/43 (41%), Positives = 29/43 (67%) Frame = -1 Query: 671 AGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKKFKDLVDE 543 +GSD++ +W A+DF+DG+ K E A +F T E ++FK +E Sbjct: 1123 SGSDRAWMWSASDFSDGDAKLERLAAKFKTPELAEEFKQKFEE 1165
>RBP26_HUMAN (Q68DN6) Ran-binding protein 2-like 6 (RanBP2L6)| Length = 1748 Score = 44.3 bits (103), Expect = 4e-04 Identities = 22/55 (40%), Positives = 30/55 (54%) Frame = -1 Query: 683 MQEHAGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAKD 519 +Q G+++ VW A DFADGE K E A+RF + FK + DE + KD Sbjct: 1401 LQNMKGTERVWVWTACDFADGERKVEHLAVRFKLQDVADSFKKIFDEAKTAQEKD 1455 Score = 40.4 bits (93), Expect = 0.005 Identities = 18/43 (41%), Positives = 29/43 (67%) Frame = -1 Query: 671 AGSDKSCVWHAADFADGELKDEMFAIRFGTVENCKKFKDLVDE 543 +GSD++ +W A+DF+DG+ K E A +F T E ++FK +E Sbjct: 1108 SGSDRAWMWLASDFSDGDAKLERLAAQFKTPELAEEFKQKFEE 1150
>RANG_SCHPO (Q09717) Ran-specific GTPase-activating protein 1 (Ran-binding| protein 1) (RANBP1) (Spi1-binding protein) Length = 215 Score = 43.9 bits (102), Expect = 5e-04 Identities = 24/56 (42%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Frame = -1 Query: 686 RMQEHAGSDKSCVWH-AADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAESLAK 522 ++ + GSD+S VW AAD ++GE E FAIRF EN FK+ ++ E AK Sbjct: 155 KLTPNVGSDRSWVWTVAADVSEGEPTAETFAIRFANSENANLFKENFEKYQEENAK 210
>YRB1_YEAST (P41920) Ran-specific GTPase-activating protein 1 (Ran-binding| protein 1) (RANBP1) (Perinuclear array-localized protein) Length = 201 Score = 41.6 bits (96), Expect = 0.002 Identities = 22/51 (43%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Frame = -1 Query: 683 MQEHAGSDKSCVWHA-ADFADGELKDEMFAIRFGTVENCKKFKDLVDEIAE 534 ++ + GSD+S V+ AD A+GE + FAIRFG+ EN KFK+ ++ E Sbjct: 146 LKPNVGSDRSWVYACTADIAEGEAEAFTFAIRFGSKENADKFKEEFEKAQE 196
>BGB_DROME (Q24040) Protein big brother| Length = 213 Score = 30.4 bits (67), Expect = 5.4 Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 4/40 (10%) Frame = -1 Query: 188 HLSIYCYM*NICSQYRGWL----LDGVVLLLSRTRNVVHE 81 H+ Y M +C ++RGW+ LDGV L R +HE Sbjct: 120 HIKSYFIMNGVCVRFRGWIDLERLDGVGCLEYDERRAMHE 159 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 91,071,334 Number of Sequences: 219361 Number of extensions: 1768275 Number of successful extensions: 4974 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 4851 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4970 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 6969622431 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
