ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27m07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP001759.1| Homo sapiens genomic DNA, chromosome 21q, sectio... 42 1.2
2dbj|AP001468.1| Homo sapiens genomic DNA, chromosome 21q22.3, cl... 42 1.2
3gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 4.7

>dbj|AP001759.1| Homo sapiens genomic DNA, chromosome 21q, section 103/105
          Length = 340000

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 7      atgcaaaggccggggtcttaacccc 31
              ||||||||||||||| |||||||||
Sbjct: 235761 atgcaaaggccgggggcttaacccc 235737



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>dbj|AP001468.1| Homo sapiens genomic DNA, chromosome 21q22.3, clone:21B35B20, telomere
             region, complete sequence
          Length = 67332

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 7     atgcaaaggccggggtcttaacccc 31
             ||||||||||||||| |||||||||
Sbjct: 63564 atgcaaaggccgggggcttaacccc 63540



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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                      
Query: 314     ccccgcgctcccgccgntggcgt 336
               |||||||||||||||| ||||||
Sbjct: 3442391 ccccgcgctcccgccgatggcgt 3442413


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 849,937
Number of Sequences: 3902068
Number of extensions: 849937
Number of successful extensions: 9059
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9029
Number of HSP's gapped (non-prelim): 30
length of query: 357
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 335
effective length of database: 17,147,199,772
effective search space: 5744311923620
effective search space used: 5744311923620
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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