ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27l23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1PHK_MYCPA (Q73ZM8) Probable phosphoketolase (EC 4.1.2.-) 30 1.2
2THT1_SCHPO (Q09684) Nuclear fusion protein tht1 29 2.6
3NELL2_MOUSE (Q61220) Protein kinase C-binding protein NELL2 prec... 28 7.5

>PHK_MYCPA (Q73ZM8) Probable phosphoketolase (EC 4.1.2.-)|
          Length = 804

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -3

Query: 271 AHIMYCT-GLGLGTWXATAEAAQMRTRVVVACYTSVP 164
           A I +CT GLG+  W +TA +      VV+AC   +P
Sbjct: 602 AAIAHCTRGLGIWDWASTARSIGAEPDVVLACAGDIP 638



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>THT1_SCHPO (Q09684) Nuclear fusion protein tht1|
          Length = 577

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +2

Query: 116 RGSVCICFPSIENHTYWYTSIASHYYSRTHLSCLS 220
           RGS   C   +E+ + W+ S  SH++   HL  L+
Sbjct: 114 RGSQSECVSKLESTSTWWLSFTSHFHDVNHLCRLA 148



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>NELL2_MOUSE (Q61220) Protein kinase C-binding protein NELL2 precursor (NEL-like|
           protein 2) (MEL91 protein)
          Length = 816

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
 Frame = -1

Query: 279 VRMRTLCIVQGLG--WELGMRPLRQLRCVRE 193
           V +RT C++ GLG  W LG+ P  Q+  + E
Sbjct: 5   VLLRTFCVILGLGAVWGLGVDPSLQIDVLTE 35


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,240,960
Number of Sequences: 219361
Number of extensions: 755301
Number of successful extensions: 1527
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1527
length of database: 80,573,946
effective HSP length: 83
effective length of database: 62,366,983
effective search space used: 1496807592
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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