ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27l23 |
|---|---|
| Clone Library Name | barley_pub |
>emb|X52572.1|HVBDG Barley DNA for (1-3,1-4)-beta-D-glucanase (EC 3.2.1.73) Length = 6260 Score = 624 bits (315), Expect = e-176 Identities = 321/324 (99%) Strand = Plus / Minus Query: 1 tactttattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacantat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 5817 tactttattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacaatat 5758 Query: 61 agttcctaggtacgcacacatgcgtgtncgtatcaagtgcatgatcaatcgaggaagggg 120 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 5757 agttcctaggtacgcacacatgcgtgtacgtatcaagtgcatgatcaatcgaggaagggg 5698 Query: 121 gagcgtttgcatatgcttcccttccatcgaaaatcatacgtactggtacactagtatagc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5697 gagcgtttgcatatgcttcccttccatcgaaaatcatacgtactggtacactagtatagc 5638 Query: 181 aagccactactactcgcgtacgcatctgagctgcctcagcggtcgcatnccaagttccca 240 |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 5637 aagccactactactcgcgtacgcatctgagctgcctcagcggtcgcatcccaagttccca 5578 Query: 241 acccaagccctgtacaatacataatgtgcgcatacgtacggcgtacacgctcttatacgc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 5577 acccaagccctgtacaatacataatgtgcgcatacgtacggcgtacacgctcttatacgc 5518 Query: 301 gcgcgcgtacgtacggacatacgg 324 |||||||||||||||||||||||| Sbjct: 5517 gcgcgcgtacgtacggacatacgg 5494
>emb|X56260.1|HVGLUEND Barley DNA for (1,3;1,4)-beta-glucanase.(EC number 3.2.1.73) Length = 4643 Score = 597 bits (301), Expect = e-168 Identities = 318/324 (98%), Gaps = 3/324 (0%) Strand = Plus / Minus Query: 1 tactttattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacantat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 4407 tactttattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacaatat 4348 Query: 61 agttcctaggtacgcacacatgcgtgtncgtatcaagtgcatgatcaatcgaggaagggg 120 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 4347 agttcctaggtacgcacacatgcgtgtacgtatcaagtgcatgatcaatcgaggaagggg 4288 Query: 121 gagcgtttgcatatgcttcccttccatcgaaaatcatacgtactggtacactagtatagc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4287 gagcgtttgcatatgcttcccttccatcgaaaatcatacgtactggtacactagtatagc 4228 Query: 181 aagccactactactcgcgtacgcatctgagctgcctcagcggtcgcatnccaagttccca 240 ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct: 4227 aagcc---actactcgcgtacgcatctgagctgcctcagcggtcgcatcccaagttccca 4171 Query: 241 acccaagccctgtacaatacataatgtgcgcatacgtacggcgtacacgctcttatacgc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4170 acccaagccctgtacaatacataatgtgcgcatacgtacggcgtacacgctcttatacgc 4111 Query: 301 gcgcgcgtacgtacggacatacgg 324 |||||||||||||||||||||||| Sbjct: 4110 gcgcgcgtacgtacggacatacgg 4087
>emb|X56775.1|HVGLB1 H.vulgare Glb 1 gene for 1-3,1-4-beta-D-glucanase Length = 4849 Score = 581 bits (293), Expect = e-163 Identities = 317/324 (97%), Gaps = 4/324 (1%) Strand = Plus / Minus Query: 1 tactttattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacantat 60 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct: 4806 tactttattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacaatat 4747 Query: 61 agttcctaggtacgcacacatgcgtgtncgtatcaagtgcatgatcaatcgaggaagggg 120 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct: 4746 agttcctaggtacgcacacatgcgtgtacgtatcaagtgcatgatcaatcgaggaagggg 4687 Query: 121 gagcgtttgcatatgcttcccttccatcgaaaatcatacgtactggtacactagtatagc 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4686 gagcgtttgcatatgcttcccttccatcgaaaatcatacgtactggtacactagtatagc 4627 Query: 181 aagccactactactcgcgtacgcatctgagctgcctcagcggtcgcatnccaagttccca 240 ||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||| Sbjct: 4626 aagcc---actactcgcgtacg-atctgagctgcctcagcggtcgcatcccaagttccca 4571 Query: 241 acccaagccctgtacaatacataatgtgcgcatacgtacggcgtacacgctcttatacgc 300 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 4570 acccaagccctgtacaatacataatgtgcgcatacgtacggcgtacacgctcttatacgc 4511 Query: 301 gcgcgcgtacgtacggacatacgg 324 |||||||||||||||||||||||| Sbjct: 4510 gcgcgcgtacgtacggacatacgg 4487
>emb|Z22873.1|TABETGLUA T.aestivum beta glucanase mRNA, complete CDS Length = 1434 Score = 297 bits (150), Expect = 1e-77 Identities = 282/325 (86%), Gaps = 20/325 (6%) Strand = Plus / Minus Query: 6 tattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacantatagttc 65 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct: 1381 tattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacaatatagtt- 1323 Query: 66 ctaggtacgcacacatgcgtgtncgtatcaagtgcatgatcaatcgaggaagggggagcg 125 ||| |||||||||||| |||| |||||||| |||||||| |||||| |||||| ||||| Sbjct: 1322 ctacttacgcacacatgtgtgtgcgtatcaaatgcatgatgaatcgacgaagggagagcg 1263 Query: 126 tttgcatatgcttcccttccatcgaaaatcatacgtactggtacactagtatagcaagcc 185 ||| ||| ||| ||||||||||| ||||||||| | ||||||| |||||||| || Sbjct: 1262 tttacatctgccccccttccatcgtaaatcatacaca----tacactactatagcaaacc 1207 Query: 186 actactactcgcgtacgcatctgagctgcctcagcggtcgcatnccaagttcccaaccca 245 ||||||| |||||||||| ||||||||||||||||||||||| ||||||||| Sbjct: 1206 actacta-tcgcgtacgcgtctgagctgcctcagcggtcgca--------ccccaaccca 1156 Query: 246 agccctgtacaatacataatgtgcgcatacgtacggcgtacacgctcttatacg------ 299 |||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct: 1155 agccctgtacaatacataatgtgcacatacgtacggcatacacgctcttatacgcgtgta 1096 Query: 300 cgcgcgcgtacgtacggacatacgg 324 |||||||||||| |||||||||||| Sbjct: 1095 cgcgcgcgtacggacggacatacgg 1071
>emb|Z22874.1|TABETGLUB T.aestivum (1,3;1,4) beta glucanase mRNA, complete CDS Length = 1426 Score = 274 bits (138), Expect = 2e-70 Identities = 279/325 (85%), Gaps = 20/325 (6%) Strand = Plus / Minus Query: 6 tattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacantatagttc 65 |||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||| Sbjct: 1395 tattattttggacaaattccgtcaaattttgacgaaattttgaaccctacaatatagttc 1336 Query: 66 ctaggtacgcacacatgcgtgtncgtatcaagtgcatgatcaatcgaggaagggggagcg 125 || |||||||||||| |||| |||||||| || ||||| |||||| |||||| ||||| Sbjct: 1335 -tacttacgcacacatgtgtgtacgtatcaaatgtatgatgaatcgacgaagggagagcg 1277 Query: 126 tttgcatatgcttcccttccatcgaaaatcatacgtactggtacactagtatagcaagcc 185 ||| ||| |||||||||||||||| ||||||||| | ||||||| || ||||| || Sbjct: 1276 tttacatctgcttcccttccatcgtaaatcatacaca----tacactactacagcaaacc 1221 Query: 186 actactactcgcgtacgcatctgagctgcctcagcggtcgcatnccaagttcccaaccca 245 ||||||| | |||||||||||||||||||||||||||||||| ||||||||| Sbjct: 1220 actacta-tagcgtacgcatctgagctgcctcagcggtcgca--------ccccaaccca 1170 Query: 246 agccctgtacaatacataatgtgcgcatacgtacggcgtacacgctcttatacg------ 299 | |||||||||||||||||||||| ||||||||| || |||||||||||||||| Sbjct: 1169 aaccctgtacaatacataatgtgcacatacgtaccgcatacacgctcttatacgcgtgta 1110 Query: 300 cgcgcgcgtacgtacggacatacgg 324 ||||||||||||||||||||||||| Sbjct: 1109 cgcgcgcgtacgtacggacatacgg 1085
>emb|Z15131.1|ASBGLUCAN A.sativa mRNA for beta glucanase Length = 1448 Score = 52.0 bits (26), Expect = 0.001 Identities = 39/42 (92%), Gaps = 1/42 (2%) Strand = Plus / Minus Query: 259 acataatgtgcgcatacgtacggcgtacacgctcttatacgc 300 ||||||||||| ||||||||| |||||||||| ||||||||| Sbjct: 1139 acataatgtgcacatacgtac-gcgtacacgcccttatacgc 1099
>gb|AF241159.1| Trypanosoma cruzi clone FGz 73 kinetoplast minicircle DNA, partial sequence Length = 322 Score = 46.1 bits (23), Expect = 0.069 Identities = 26/27 (96%) Strand = Plus / Minus Query: 28 caagttttgacgaaattttgaacccta 54 |||||||| |||||||||||||||||| Sbjct: 263 caagttttcacgaaattttgaacccta 237
>gb|AC022675.7| Mus musculus chromosome 1, clone RP23-59N15, complete sequence Length = 181063 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 255 caatacataatgtgcgcatac 275 ||||||||||||||||||||| Sbjct: 45217 caatacataatgtgcgcatac 45237
>emb|AL365314.16| Mouse DNA sequence from clone RP23-106N23 on chromosome 1, complete sequence Length = 182054 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 255 caatacataatgtgcgcatac 275 ||||||||||||||||||||| Sbjct: 176184 caatacataatgtgcgcatac 176164
>gb|AC132446.3| Mus musculus BAC clone RP23-175K4 from chromosome 12, complete sequence Length = 190088 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 actttattattttggacaaa 21 |||||||||||||||||||| Sbjct: 57061 actttattattttggacaaa 57042
>gb|AC068006.10| Mus musculus chromosome 7, clone RP23-6I17, complete sequence Length = 203141 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 230 ccaagttcccaacccaagcc 249 |||||||||||||||||||| Sbjct: 97502 ccaagttcccaacccaagcc 97521
>emb|AJ276505.2|MMU276505 Mus musculus genomic fragment, 281000 bp, chromosome 7 Length = 281000 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 230 ccaagttcccaacccaagcc 249 |||||||||||||||||||| Sbjct: 125367 ccaagttcccaacccaagcc 125348
>gb|AC068892.7| Homo sapiens chromosome 10 clone RP11-116D21, complete sequence Length = 161178 Score = 40.1 bits (20), Expect = 4.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 7 attattttggacaaatttcgtcaa 30 ||||||||||||||||||| |||| Sbjct: 22782 attattttggacaaatttcctcaa 22805
>gb|AC158635.6| Mus musculus 10 BAC RP23-396A23 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 183931 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 3 ctttattattttggacaaat 22 |||||||||||||||||||| Sbjct: 86054 ctttattattttggacaaat 86035
>ref|XM_573224.1| PREDICTED: Rattus norvegicus similar to Lethal giant larvae homolog 2 (LOC360661), mRNA Length = 8565 Score = 40.1 bits (20), Expect = 4.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 209 agctgcctcagcggtcgcat 228 |||||||||||||||||||| Sbjct: 773 agctgcctcagcggtcgcat 792 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,012,104 Number of Sequences: 3902068 Number of extensions: 2012104 Number of successful extensions: 31313 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 14 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 31273 Number of HSP's gapped (non-prelim): 37 length of query: 324 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 302 effective length of database: 17,147,199,772 effective search space: 5178454331144 effective search space used: 5178454331144 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
