ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27l23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|X52572.1|HVBDG Barley DNA for (1-3,1-4)-beta-D-glucanase (EC... 624 e-176
2emb|X56260.1|HVGLUEND Barley DNA for (1,3;1,4)-beta-glucanase.(E... 597 e-168
3emb|X56775.1|HVGLB1 H.vulgare Glb 1 gene for 1-3,1-4-beta-D-gluc... 581 e-163
4emb|Z22873.1|TABETGLUA T.aestivum beta glucanase mRNA, complete CDS 297 1e-77
5emb|Z22874.1|TABETGLUB T.aestivum (1,3;1,4) beta glucanase mRNA,... 274 2e-70
6emb|Z15131.1|ASBGLUCAN A.sativa mRNA for beta glucanase 52 0.001
7gb|AF241159.1| Trypanosoma cruzi clone FGz 73 kinetoplast minici... 46 0.069
8gb|AC022675.7| Mus musculus chromosome 1, clone RP23-59N15, comp... 42 1.1
9emb|AL365314.16| Mouse DNA sequence from clone RP23-106N23 on ch... 42 1.1
10gb|AC132446.3| Mus musculus BAC clone RP23-175K4 from chromosome... 40 4.3
11gb|AC068006.10| Mus musculus chromosome 7, clone RP23-6I17, comp... 40 4.3
12emb|AJ276505.2|MMU276505 Mus musculus genomic fragment, 281000 b... 40 4.3
13gb|AC068892.7| Homo sapiens chromosome 10 clone RP11-116D21, com... 40 4.3
14gb|AC158635.6| Mus musculus 10 BAC RP23-396A23 (Roswell Park Can... 40 4.3
15ref|XM_573224.1| PREDICTED: Rattus norvegicus similar to Lethal ... 40 4.3

>emb|X52572.1|HVBDG Barley DNA for (1-3,1-4)-beta-D-glucanase (EC 3.2.1.73)
          Length = 6260

 Score =  624 bits (315), Expect = e-176
 Identities = 321/324 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    tactttattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacantat 60
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 5817 tactttattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacaatat 5758

                                                                        
Query: 61   agttcctaggtacgcacacatgcgtgtncgtatcaagtgcatgatcaatcgaggaagggg 120
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 5757 agttcctaggtacgcacacatgcgtgtacgtatcaagtgcatgatcaatcgaggaagggg 5698

                                                                        
Query: 121  gagcgtttgcatatgcttcccttccatcgaaaatcatacgtactggtacactagtatagc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5697 gagcgtttgcatatgcttcccttccatcgaaaatcatacgtactggtacactagtatagc 5638

                                                                        
Query: 181  aagccactactactcgcgtacgcatctgagctgcctcagcggtcgcatnccaagttccca 240
            |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 5637 aagccactactactcgcgtacgcatctgagctgcctcagcggtcgcatcccaagttccca 5578

                                                                        
Query: 241  acccaagccctgtacaatacataatgtgcgcatacgtacggcgtacacgctcttatacgc 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5577 acccaagccctgtacaatacataatgtgcgcatacgtacggcgtacacgctcttatacgc 5518

                                    
Query: 301  gcgcgcgtacgtacggacatacgg 324
            ||||||||||||||||||||||||
Sbjct: 5517 gcgcgcgtacgtacggacatacgg 5494



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>emb|X56260.1|HVGLUEND Barley DNA for (1,3;1,4)-beta-glucanase.(EC number 3.2.1.73)
          Length = 4643

 Score =  597 bits (301), Expect = e-168
 Identities = 318/324 (98%), Gaps = 3/324 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    tactttattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacantat 60
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 4407 tactttattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacaatat 4348

                                                                        
Query: 61   agttcctaggtacgcacacatgcgtgtncgtatcaagtgcatgatcaatcgaggaagggg 120
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4347 agttcctaggtacgcacacatgcgtgtacgtatcaagtgcatgatcaatcgaggaagggg 4288

                                                                        
Query: 121  gagcgtttgcatatgcttcccttccatcgaaaatcatacgtactggtacactagtatagc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4287 gagcgtttgcatatgcttcccttccatcgaaaatcatacgtactggtacactagtatagc 4228

                                                                        
Query: 181  aagccactactactcgcgtacgcatctgagctgcctcagcggtcgcatnccaagttccca 240
            |||||   |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 4227 aagcc---actactcgcgtacgcatctgagctgcctcagcggtcgcatcccaagttccca 4171

                                                                        
Query: 241  acccaagccctgtacaatacataatgtgcgcatacgtacggcgtacacgctcttatacgc 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4170 acccaagccctgtacaatacataatgtgcgcatacgtacggcgtacacgctcttatacgc 4111

                                    
Query: 301  gcgcgcgtacgtacggacatacgg 324
            ||||||||||||||||||||||||
Sbjct: 4110 gcgcgcgtacgtacggacatacgg 4087



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>emb|X56775.1|HVGLB1 H.vulgare Glb 1 gene for 1-3,1-4-beta-D-glucanase
          Length = 4849

 Score =  581 bits (293), Expect = e-163
 Identities = 317/324 (97%), Gaps = 4/324 (1%)
 Strand = Plus / Minus

                                                                        
Query: 1    tactttattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacantat 60
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 4806 tactttattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacaatat 4747

                                                                        
Query: 61   agttcctaggtacgcacacatgcgtgtncgtatcaagtgcatgatcaatcgaggaagggg 120
            ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 4746 agttcctaggtacgcacacatgcgtgtacgtatcaagtgcatgatcaatcgaggaagggg 4687

                                                                        
Query: 121  gagcgtttgcatatgcttcccttccatcgaaaatcatacgtactggtacactagtatagc 180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4686 gagcgtttgcatatgcttcccttccatcgaaaatcatacgtactggtacactagtatagc 4627

                                                                        
Query: 181  aagccactactactcgcgtacgcatctgagctgcctcagcggtcgcatnccaagttccca 240
            |||||   |||||||||||||| ||||||||||||||||||||||||| |||||||||||
Sbjct: 4626 aagcc---actactcgcgtacg-atctgagctgcctcagcggtcgcatcccaagttccca 4571

                                                                        
Query: 241  acccaagccctgtacaatacataatgtgcgcatacgtacggcgtacacgctcttatacgc 300
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4570 acccaagccctgtacaatacataatgtgcgcatacgtacggcgtacacgctcttatacgc 4511

                                    
Query: 301  gcgcgcgtacgtacggacatacgg 324
            ||||||||||||||||||||||||
Sbjct: 4510 gcgcgcgtacgtacggacatacgg 4487



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>emb|Z22873.1|TABETGLUA T.aestivum beta glucanase mRNA, complete CDS
          Length = 1434

 Score =  297 bits (150), Expect = 1e-77
 Identities = 282/325 (86%), Gaps = 20/325 (6%)
 Strand = Plus / Minus

                                                                        
Query: 6    tattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacantatagttc 65
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| 
Sbjct: 1381 tattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacaatatagtt- 1323

                                                                        
Query: 66   ctaggtacgcacacatgcgtgtncgtatcaagtgcatgatcaatcgaggaagggggagcg 125
            |||  |||||||||||| |||| |||||||| |||||||| |||||| |||||| |||||
Sbjct: 1322 ctacttacgcacacatgtgtgtgcgtatcaaatgcatgatgaatcgacgaagggagagcg 1263

                                                                        
Query: 126  tttgcatatgcttcccttccatcgaaaatcatacgtactggtacactagtatagcaagcc 185
            ||| ||| |||  ||||||||||| |||||||||  |    ||||||| |||||||| ||
Sbjct: 1262 tttacatctgccccccttccatcgtaaatcatacaca----tacactactatagcaaacc 1207

                                                                        
Query: 186  actactactcgcgtacgcatctgagctgcctcagcggtcgcatnccaagttcccaaccca 245
            ||||||| |||||||||| |||||||||||||||||||||||         |||||||||
Sbjct: 1206 actacta-tcgcgtacgcgtctgagctgcctcagcggtcgca--------ccccaaccca 1156

                                                                        
Query: 246  agccctgtacaatacataatgtgcgcatacgtacggcgtacacgctcttatacg------ 299
            |||||||||||||||||||||||| |||||||||||| ||||||||||||||||      
Sbjct: 1155 agccctgtacaatacataatgtgcacatacgtacggcatacacgctcttatacgcgtgta 1096

                                     
Query: 300  cgcgcgcgtacgtacggacatacgg 324
            |||||||||||| ||||||||||||
Sbjct: 1095 cgcgcgcgtacggacggacatacgg 1071



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>emb|Z22874.1|TABETGLUB T.aestivum (1,3;1,4) beta glucanase mRNA, complete CDS
          Length = 1426

 Score =  274 bits (138), Expect = 2e-70
 Identities = 279/325 (85%), Gaps = 20/325 (6%)
 Strand = Plus / Minus

                                                                        
Query: 6    tattattttggacaaatttcgtcaagttttgacgaaattttgaaccctacantatagttc 65
            |||||||||||||||||| |||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 1395 tattattttggacaaattccgtcaaattttgacgaaattttgaaccctacaatatagttc 1336

                                                                        
Query: 66   ctaggtacgcacacatgcgtgtncgtatcaagtgcatgatcaatcgaggaagggggagcg 125
             ||  |||||||||||| |||| |||||||| || ||||| |||||| |||||| |||||
Sbjct: 1335 -tacttacgcacacatgtgtgtacgtatcaaatgtatgatgaatcgacgaagggagagcg 1277

                                                                        
Query: 126  tttgcatatgcttcccttccatcgaaaatcatacgtactggtacactagtatagcaagcc 185
            ||| ||| |||||||||||||||| |||||||||  |    ||||||| || ||||| ||
Sbjct: 1276 tttacatctgcttcccttccatcgtaaatcatacaca----tacactactacagcaaacc 1221

                                                                        
Query: 186  actactactcgcgtacgcatctgagctgcctcagcggtcgcatnccaagttcccaaccca 245
            ||||||| | ||||||||||||||||||||||||||||||||         |||||||||
Sbjct: 1220 actacta-tagcgtacgcatctgagctgcctcagcggtcgca--------ccccaaccca 1170

                                                                        
Query: 246  agccctgtacaatacataatgtgcgcatacgtacggcgtacacgctcttatacg------ 299
            | |||||||||||||||||||||| ||||||||| || ||||||||||||||||      
Sbjct: 1169 aaccctgtacaatacataatgtgcacatacgtaccgcatacacgctcttatacgcgtgta 1110

                                     
Query: 300  cgcgcgcgtacgtacggacatacgg 324
            |||||||||||||||||||||||||
Sbjct: 1109 cgcgcgcgtacgtacggacatacgg 1085



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>emb|Z15131.1|ASBGLUCAN A.sativa mRNA for beta glucanase
          Length = 1448

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 39/42 (92%), Gaps = 1/42 (2%)
 Strand = Plus / Minus

                                                      
Query: 259  acataatgtgcgcatacgtacggcgtacacgctcttatacgc 300
            ||||||||||| ||||||||| |||||||||| |||||||||
Sbjct: 1139 acataatgtgcacatacgtac-gcgtacacgcccttatacgc 1099



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>gb|AF241159.1| Trypanosoma cruzi clone FGz 73 kinetoplast minicircle DNA, partial
           sequence
          Length = 322

 Score = 46.1 bits (23), Expect = 0.069
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                      
Query: 28  caagttttgacgaaattttgaacccta 54
           |||||||| ||||||||||||||||||
Sbjct: 263 caagttttcacgaaattttgaacccta 237



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>gb|AC022675.7| Mus musculus chromosome 1, clone RP23-59N15, complete sequence
          Length = 181063

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 255   caatacataatgtgcgcatac 275
             |||||||||||||||||||||
Sbjct: 45217 caatacataatgtgcgcatac 45237



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>emb|AL365314.16| Mouse DNA sequence from clone RP23-106N23 on chromosome 1, complete
              sequence
          Length = 182054

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 255    caatacataatgtgcgcatac 275
              |||||||||||||||||||||
Sbjct: 176184 caatacataatgtgcgcatac 176164



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>gb|AC132446.3| Mus musculus BAC clone RP23-175K4 from chromosome 12, complete sequence
          Length = 190088

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 2     actttattattttggacaaa 21
             ||||||||||||||||||||
Sbjct: 57061 actttattattttggacaaa 57042



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>gb|AC068006.10| Mus musculus chromosome 7, clone RP23-6I17, complete sequence
          Length = 203141

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 230   ccaagttcccaacccaagcc 249
             ||||||||||||||||||||
Sbjct: 97502 ccaagttcccaacccaagcc 97521



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>emb|AJ276505.2|MMU276505 Mus musculus genomic fragment, 281000 bp, chromosome 7
          Length = 281000

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 230    ccaagttcccaacccaagcc 249
              ||||||||||||||||||||
Sbjct: 125367 ccaagttcccaacccaagcc 125348



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>gb|AC068892.7| Homo sapiens chromosome 10 clone RP11-116D21, complete sequence
          Length = 161178

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 7     attattttggacaaatttcgtcaa 30
             ||||||||||||||||||| ||||
Sbjct: 22782 attattttggacaaatttcctcaa 22805



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>gb|AC158635.6| Mus musculus 10 BAC RP23-396A23 (Roswell Park Cancer Institute
             (C57BL/6J Female) Mouse BAC Library) complete sequence
          Length = 183931

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 3     ctttattattttggacaaat 22
             ||||||||||||||||||||
Sbjct: 86054 ctttattattttggacaaat 86035



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>ref|XM_573224.1| PREDICTED: Rattus norvegicus similar to Lethal giant larvae homolog
           2 (LOC360661), mRNA
          Length = 8565

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 209 agctgcctcagcggtcgcat 228
           ||||||||||||||||||||
Sbjct: 773 agctgcctcagcggtcgcat 792


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,012,104
Number of Sequences: 3902068
Number of extensions: 2012104
Number of successful extensions: 31313
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 31273
Number of HSP's gapped (non-prelim): 37
length of query: 324
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 302
effective length of database: 17,147,199,772
effective search space: 5178454331144
effective search space used: 5178454331144
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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