Clone Name | rbasd27l14 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_123164.1| Arabidopsis thaliana UDP-glycosyltransferase/ transferase, transferring hexosyl groups AT5G38040 mRNA, complete cds Length = 1350 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 2 cgacgagttcctttactttgttgaagtag 30 |||||||||| | |||||||||||||||| Sbjct: 336 cgacgagttcatgtactttgttgaagtag 364
>gb|AC010495.7| Homo sapiens chromosome 5 clone CTD-2350H4, complete sequence Length = 52602 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 9 ttcctttactttgttgaagtagtcc 33 |||||||||||||||| |||||||| Sbjct: 42789 ttcctttactttgttgtagtagtcc 42813
>gb|AC025182.4| Homo sapiens chromosome 5 clone CTD-2192A1, complete sequence Length = 109069 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 9 ttcctttactttgttgaagtagtcc 33 |||||||||||||||| |||||||| Sbjct: 107919 ttcctttactttgttgtagtagtcc 107895
>dbj|AB028606.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F16F17 Length = 61510 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 2 cgacgagttcctttactttgttgaagtag 30 |||||||||| | |||||||||||||||| Sbjct: 34519 cgacgagttcatgtactttgttgaagtag 34547
>ref|NM_183504.1| Oryza sativa (japonica cultivar-group), mRNA Length = 696 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 400 tctatgccaattctcgagctagaggccc 427 |||||||||||||| |||||| |||||| Sbjct: 656 tctatgccaattcttgagctaaaggccc 629
>ref|XM_483478.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2234 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 tcttcctcatggatggtgat 515 |||||||||||||||||||| Sbjct: 2093 tcttcctcatggatggtgat 2112
>ref|XM_454984.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E22968g predicted mRNA Length = 333 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 478 ttgatgatctcagcaccttc 497 |||||||||||||||||||| Sbjct: 326 ttgatgatctcagcaccttc 307
>gb|AC146054.3| Pan troglodytes BAC clone RP43-78A13 from 7, complete sequence Length = 155731 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 13 tttactttgttgaagtagtc 32 |||||||||||||||||||| Sbjct: 112752 tttactttgttgaagtagtc 112771
>gb|AC111096.15| Mus musculus chromosome 3, clone RP23-174B18, complete sequence Length = 209936 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 558 tctcacctccatgcttgaat 577 |||||||||||||||||||| Sbjct: 71972 tctcacctccatgcttgaat 71953
>emb|AL158830.17| Human DNA sequence from clone RP11-421H8 on chromosome 9 Contains the 3' end of the RECK gene for reversion-inducing-cysteine-rich protein with kazal motifs (ST15, hRECK), the C9orf19 gene for ,chromosome 9 open reading frame 19 (GAPR-1, GLIPR2), the CCIN gene for calicin, the CLTA gene for clathrin, light polypeptide (LCA), the gene for UDP-N-acetylglucosamine-2-epimerase/N-acetylmannosamine kinase (NM, DMRV, IBM2, GLCNE)(GNE) and five CpG islands, complete sequence Length = 191436 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 485 tctcagcaccttcttcctca 504 |||||||||||||||||||| Sbjct: 11941 tctcagcaccttcttcctca 11960
>emb|AL158072.9| Human DNA sequence from clone RP11-30O14 on chromosome 9p21.1-21.3, complete sequence Length = 200840 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 485 tctcagcaccttcttcctcatgga 508 ||||||||||| |||||||||||| Sbjct: 69556 tctcagcacctccttcctcatgga 69533
>emb|AL121782.9|HSJ585I14 Human DNA sequence from clone RP4-585I14 on chromosome 20 Contains the 3' end of the C20orf13 gene for chromosome 20 open reading frame 13 and the GAPDP2 gene for glyceraldehyde-3-phosphate dehydrogenase pseudogene 2, complete sequence Length = 144781 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 actccacatcacttggtctt 196 |||||||||||||||||||| Sbjct: 74781 actccacatcacttggtctt 74762
>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140 of Kluyveromyces lactis Length = 2234072 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 478 ttgatgatctcagcaccttc 497 |||||||||||||||||||| Sbjct: 2038736 ttgatgatctcagcaccttc 2038717
>dbj|AK061879.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E10, full insert sequence Length = 1355 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 tcttcctcatggatggtgat 515 |||||||||||||||||||| Sbjct: 1264 tcttcctcatggatggtgat 1283
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 ttggtcttgctcaacccaag 208 |||||||||||||||||||| Sbjct: 3476270 ttggtcttgctcaacccaag 3476289
>gb|AY119564.1| Drosophila melanogaster HL01062 full insert cDNA Length = 2937 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 446 acattttttggccagcaaca 465 |||||||||||||||||||| Sbjct: 156 acattttttggccagcaaca 175
>gb|AC010025.6| Drosophila melanogaster 3L BAC RPCI98-20B1 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 175679 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 446 acattttttggccagcaaca 465 |||||||||||||||||||| Sbjct: 38704 acattttttggccagcaaca 38685
>ref|NM_140348.1| Drosophila melanogaster CG10960-RB, transcript variant B (CG10960), mRNA Length = 2914 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 446 acattttttggccagcaaca 465 |||||||||||||||||||| Sbjct: 156 acattttttggccagcaaca 175
>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold Length = 2136267 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 505 tggatggtgatcacctcatg 524 |||||||||||||||||||| Sbjct: 1866642 tggatggtgatcacctcatg 1866661
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 tcttcctcatggatggtgat 515 |||||||||||||||||||| Sbjct: 26438090 tcttcctcatggatggtgat 26438109
>gb|AC130784.3| Atelerix albiventris clone LB4-112D1, complete sequence Length = 166122 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 505 tggatggtgatcacctcatg 524 |||||||||||||||||||| Sbjct: 92652 tggatggtgatcacctcatg 92671
>gb|AF296831.1|F18O9 Arabidopsis thaliana BAC F18O9 Length = 95463 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 catcacttggtcttgctcaa 202 |||||||||||||||||||| Sbjct: 7573 catcacttggtcttgctcaa 7592
>gb|DQ246442.1| Pseudomonas syringae pv. tagetis strain LMG5090 hrp/hrc gene cluster, complete sequence Length = 23154 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 453 ttggccagcaacagagtgat 472 |||||||||||||||||||| Sbjct: 20147 ttggccagcaacagagtgat 20128
>dbj|AP003920.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1789_C07 Length = 138944 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 tcttcctcatggatggtgat 515 |||||||||||||||||||| Sbjct: 87642 tcttcctcatggatggtgat 87661
>dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1770_H02 Length = 170648 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 tcttcctcatggatggtgat 515 |||||||||||||||||||| Sbjct: 167671 tcttcctcatggatggtgat 167690
>dbj|AB046431.1| Arabidopsis thaliana DNA, chromosome 5 centromere region, clone:T3B16 Length = 85962 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 183 catcacttggtcttgctcaa 202 |||||||||||||||||||| Sbjct: 36750 catcacttggtcttgctcaa 36769
>emb|X54688.1|TAAGCNN35 Wheat alpha-gliadin pseudogene (clone CNN35) Length = 3573 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 67 ttacatgatgagaggagaac 86 |||||||||||||||||||| Sbjct: 2150 ttacatgatgagaggagaac 2131
>dbj|AK072408.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083H19, full insert sequence Length = 2233 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 496 tcttcctcatggatggtgat 515 |||||||||||||||||||| Sbjct: 2092 tcttcctcatggatggtgat 2111
>gb|AY912572.1| Uncultured forest soil bacterium clone DUNnif181 dinitrogenase reductase (nifH) gene, partial cds Length = 355 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 491 caccttcttcctcatggatg 510 |||||||||||||||||||| Sbjct: 46 caccttcttcctcatggatg 27
>gb|AE003540.3| Drosophila melanogaster chromosome 3L, section 45 of 83 of the complete sequence Length = 297381 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 446 acattttttggccagcaaca 465 |||||||||||||||||||| Sbjct: 255789 acattttttggccagcaaca 255770
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 189 ttggtcttgctcaacccaag 208 |||||||||||||||||||| Sbjct: 3472003 ttggtcttgctcaacccaag 3472022
>emb|AL672182.18| Mouse DNA sequence from clone RP23-293I3 on chromosome 11, complete sequence Length = 211363 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 68 tacatgatgagaggagaaca 87 |||||||||||||||||||| Sbjct: 24198 tacatgatgagaggagaaca 24179 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,413,779 Number of Sequences: 3902068 Number of extensions: 5413779 Number of successful extensions: 85351 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 32 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 85236 Number of HSP's gapped (non-prelim): 115 length of query: 637 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 614 effective length of database: 17,143,297,704 effective search space: 10525984790256 effective search space used: 10525984790256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)