ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27l14
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|NM_123164.1| Arabidopsis thaliana UDP-glycosyltransferase/ t... 42 2.2
2gb|AC010495.7| Homo sapiens chromosome 5 clone CTD-2350H4, compl... 42 2.2
3gb|AC025182.4| Homo sapiens chromosome 5 clone CTD-2192A1, compl... 42 2.2
4dbj|AB028606.1| Arabidopsis thaliana genomic DNA, chromosome 5, ... 42 2.2
5ref|NM_183504.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.7
6ref|XM_483478.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.7
7ref|XM_454984.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E22968g ... 40 8.7
8gb|AC146054.3| Pan troglodytes BAC clone RP43-78A13 from 7, comp... 40 8.7
9gb|AC111096.15| Mus musculus chromosome 3, clone RP23-174B18, co... 40 8.7
10emb|AL158830.17| Human DNA sequence from clone RP11-421H8 on chr... 40 8.7
11emb|AL158072.9| Human DNA sequence from clone RP11-30O14 on chro... 40 8.7
12emb|AL121782.9|HSJ585I14 Human DNA sequence from clone RP4-585I1... 40 8.7
13emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromoso... 40 8.7
14dbj|AK061879.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.7
15dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, c... 40 8.7
16gb|AY119564.1| Drosophila melanogaster HL01062 full insert cDNA 40 8.7
17gb|AC010025.6| Drosophila melanogaster 3L BAC RPCI98-20B1 (Roswe... 40 8.7
18ref|NM_140348.1| Drosophila melanogaster CG10960-RB, transcript ... 40 8.7
19gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold 40 8.7
20dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
21gb|AC130784.3| Atelerix albiventris clone LB4-112D1, complete se... 40 8.7
22gb|AF296831.1|F18O9 Arabidopsis thaliana BAC F18O9 40 8.7
23gb|DQ246442.1| Pseudomonas syringae pv. tagetis strain LMG5090 h... 40 8.7
24dbj|AP003920.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
25dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
26dbj|AB046431.1| Arabidopsis thaliana DNA, chromosome 5 centromer... 40 8.7
27emb|X54688.1|TAAGCNN35 Wheat alpha-gliadin pseudogene (clone CNN35) 40 8.7
28dbj|AK072408.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.7
29gb|AY912572.1| Uncultured forest soil bacterium clone DUNnif181 ... 40 8.7
30gb|AE003540.3| Drosophila melanogaster chromosome 3L, section 45... 40 8.7
31gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete... 40 8.7
32emb|AL672182.18| Mouse DNA sequence from clone RP23-293I3 on chr... 40 8.7

>ref|NM_123164.1| Arabidopsis thaliana UDP-glycosyltransferase/ transferase,
           transferring hexosyl groups AT5G38040 mRNA, complete cds
          Length = 1350

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                        
Query: 2   cgacgagttcctttactttgttgaagtag 30
           |||||||||| | ||||||||||||||||
Sbjct: 336 cgacgagttcatgtactttgttgaagtag 364



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>gb|AC010495.7| Homo sapiens chromosome 5 clone CTD-2350H4, complete sequence
          Length = 52602

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 9     ttcctttactttgttgaagtagtcc 33
             |||||||||||||||| ||||||||
Sbjct: 42789 ttcctttactttgttgtagtagtcc 42813



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>gb|AC025182.4| Homo sapiens chromosome 5 clone CTD-2192A1, complete sequence
          Length = 109069

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 9      ttcctttactttgttgaagtagtcc 33
              |||||||||||||||| ||||||||
Sbjct: 107919 ttcctttactttgttgtagtagtcc 107895



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>dbj|AB028606.1| Arabidopsis thaliana genomic DNA, chromosome 5, BAC clone:F16F17
          Length = 61510

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 2     cgacgagttcctttactttgttgaagtag 30
             |||||||||| | ||||||||||||||||
Sbjct: 34519 cgacgagttcatgtactttgttgaagtag 34547



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>ref|NM_183504.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 696

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 400 tctatgccaattctcgagctagaggccc 427
           |||||||||||||| |||||| ||||||
Sbjct: 656 tctatgccaattcttgagctaaaggccc 629



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>ref|XM_483478.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2234

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 496  tcttcctcatggatggtgat 515
            ||||||||||||||||||||
Sbjct: 2093 tcttcctcatggatggtgat 2112



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>ref|XM_454984.1| Kluyveromyces lactis NRRL Y-1140, KLLA0E22968g predicted mRNA
          Length = 333

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 478 ttgatgatctcagcaccttc 497
           ||||||||||||||||||||
Sbjct: 326 ttgatgatctcagcaccttc 307



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>gb|AC146054.3| Pan troglodytes BAC clone RP43-78A13 from 7, complete sequence
          Length = 155731

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 13     tttactttgttgaagtagtc 32
              ||||||||||||||||||||
Sbjct: 112752 tttactttgttgaagtagtc 112771



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>gb|AC111096.15| Mus musculus chromosome 3, clone RP23-174B18, complete sequence
          Length = 209936

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 558   tctcacctccatgcttgaat 577
             ||||||||||||||||||||
Sbjct: 71972 tctcacctccatgcttgaat 71953



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>emb|AL158830.17| Human DNA sequence from clone RP11-421H8 on chromosome 9 Contains the
             3' end of the RECK gene for
             reversion-inducing-cysteine-rich protein with kazal motifs
             (ST15, hRECK),  the C9orf19 gene for ,chromosome 9 open
             reading frame 19 (GAPR-1, GLIPR2), the CCIN gene for
             calicin, the CLTA gene for clathrin, light polypeptide
             (LCA), the gene for
             UDP-N-acetylglucosamine-2-epimerase/N-acetylmannosamine
             kinase (NM, DMRV, IBM2, GLCNE)(GNE) and five CpG islands,
             complete sequence
          Length = 191436

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 485   tctcagcaccttcttcctca 504
             ||||||||||||||||||||
Sbjct: 11941 tctcagcaccttcttcctca 11960



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>emb|AL158072.9| Human DNA sequence from clone RP11-30O14 on chromosome 9p21.1-21.3,
             complete sequence
          Length = 200840

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 485   tctcagcaccttcttcctcatgga 508
             ||||||||||| ||||||||||||
Sbjct: 69556 tctcagcacctccttcctcatgga 69533



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>emb|AL121782.9|HSJ585I14 Human DNA sequence from clone RP4-585I14 on chromosome 20 Contains the
             3' end of the C20orf13 gene for chromosome 20 open reading
             frame 13 and the GAPDP2 gene for
             glyceraldehyde-3-phosphate dehydrogenase pseudogene 2,
             complete sequence
          Length = 144781

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   actccacatcacttggtctt 196
             ||||||||||||||||||||
Sbjct: 74781 actccacatcacttggtctt 74762



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>emb|CR382125.1| Kluyveromyces lactis strain NRRL Y-1140 chromosome E of strain NRRL Y-1140
               of Kluyveromyces lactis
          Length = 2234072

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 478     ttgatgatctcagcaccttc 497
               ||||||||||||||||||||
Sbjct: 2038736 ttgatgatctcagcaccttc 2038717



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>dbj|AK061879.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-E10, full
            insert sequence
          Length = 1355

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 496  tcttcctcatggatggtgat 515
            ||||||||||||||||||||
Sbjct: 1264 tcttcctcatggatggtgat 1283



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>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome
          Length = 4940217

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 189     ttggtcttgctcaacccaag 208
               ||||||||||||||||||||
Sbjct: 3476270 ttggtcttgctcaacccaag 3476289



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>gb|AY119564.1| Drosophila melanogaster HL01062 full insert cDNA
          Length = 2937

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 446 acattttttggccagcaaca 465
           ||||||||||||||||||||
Sbjct: 156 acattttttggccagcaaca 175



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>gb|AC010025.6| Drosophila melanogaster 3L BAC RPCI98-20B1 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 175679

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 446   acattttttggccagcaaca 465
             ||||||||||||||||||||
Sbjct: 38704 acattttttggccagcaaca 38685



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>ref|NM_140348.1| Drosophila melanogaster CG10960-RB, transcript variant B (CG10960),
           mRNA
          Length = 2914

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 446 acattttttggccagcaaca 465
           ||||||||||||||||||||
Sbjct: 156 acattttttggccagcaaca 175



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>gb|DP000003.1| Atelerix albiventris target 1 genomic scaffold
          Length = 2136267

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 505     tggatggtgatcacctcatg 524
               ||||||||||||||||||||
Sbjct: 1866642 tggatggtgatcacctcatg 1866661



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 496      tcttcctcatggatggtgat 515
                ||||||||||||||||||||
Sbjct: 26438090 tcttcctcatggatggtgat 26438109



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>gb|AC130784.3| Atelerix albiventris clone LB4-112D1, complete sequence
          Length = 166122

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 505   tggatggtgatcacctcatg 524
             ||||||||||||||||||||
Sbjct: 92652 tggatggtgatcacctcatg 92671



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>gb|AF296831.1|F18O9 Arabidopsis thaliana BAC F18O9
          Length = 95463

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 183  catcacttggtcttgctcaa 202
            ||||||||||||||||||||
Sbjct: 7573 catcacttggtcttgctcaa 7592



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>gb|DQ246442.1| Pseudomonas syringae pv. tagetis strain LMG5090 hrp/hrc gene cluster,
             complete sequence
          Length = 23154

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 453   ttggccagcaacagagtgat 472
             ||||||||||||||||||||
Sbjct: 20147 ttggccagcaacagagtgat 20128



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>dbj|AP003920.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OJ1789_C07
          Length = 138944

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 496   tcttcctcatggatggtgat 515
             ||||||||||||||||||||
Sbjct: 87642 tcttcctcatggatggtgat 87661



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>dbj|AP004015.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1770_H02
          Length = 170648

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 496    tcttcctcatggatggtgat 515
              ||||||||||||||||||||
Sbjct: 167671 tcttcctcatggatggtgat 167690



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>dbj|AB046431.1| Arabidopsis thaliana DNA, chromosome 5 centromere region, clone:T3B16
          Length = 85962

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 183   catcacttggtcttgctcaa 202
             ||||||||||||||||||||
Sbjct: 36750 catcacttggtcttgctcaa 36769



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>emb|X54688.1|TAAGCNN35 Wheat alpha-gliadin pseudogene (clone CNN35)
          Length = 3573

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 67   ttacatgatgagaggagaac 86
            ||||||||||||||||||||
Sbjct: 2150 ttacatgatgagaggagaac 2131



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>dbj|AK072408.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023083H19, full
            insert sequence
          Length = 2233

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 496  tcttcctcatggatggtgat 515
            ||||||||||||||||||||
Sbjct: 2092 tcttcctcatggatggtgat 2111



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>gb|AY912572.1| Uncultured forest soil bacterium clone DUNnif181 dinitrogenase
           reductase (nifH) gene, partial cds
          Length = 355

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 491 caccttcttcctcatggatg 510
           ||||||||||||||||||||
Sbjct: 46  caccttcttcctcatggatg 27



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>gb|AE003540.3| Drosophila melanogaster chromosome 3L, section 45 of 83 of the complete
              sequence
          Length = 297381

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 446    acattttttggccagcaaca 465
              ||||||||||||||||||||
Sbjct: 255789 acattttttggccagcaaca 255770



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>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome
          Length = 4941439

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 189     ttggtcttgctcaacccaag 208
               ||||||||||||||||||||
Sbjct: 3472003 ttggtcttgctcaacccaag 3472022



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>emb|AL672182.18| Mouse DNA sequence from clone RP23-293I3 on chromosome 11, complete
             sequence
          Length = 211363

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 68    tacatgatgagaggagaaca 87
             ||||||||||||||||||||
Sbjct: 24198 tacatgatgagaggagaaca 24179


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,413,779
Number of Sequences: 3902068
Number of extensions: 5413779
Number of successful extensions: 85351
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 85236
Number of HSP's gapped (non-prelim): 115
length of query: 637
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 614
effective length of database: 17,143,297,704
effective search space: 10525984790256
effective search space used: 10525984790256
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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