No.
Definition
Score (bits)
E Value
1 ref|NM_191682.1| Oryza sativa (japonica cultivar-group), predic...
184
3e-43
2 dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D...
155
3e-34
3 dbj|AP003273.3| Oryza sativa (japonica cultivar-group) genomic D...
155
3e-34
4 gb|AY105545.1| Zea mays PCO081749 mRNA sequence
113
9e-22
5 gb|AY110645.1| Zea mays CL20581_1 mRNA sequence
62
3e-06
6 gb|BT019119.1| Zea mays clone Contig731.F mRNA sequence
60
1e-05
7 gb|AY103921.1| Zea mays PCO126557 mRNA sequence
52
0.003
8 dbj|AK111994.1| Oryza sativa (japonica cultivar-group) cDNA clon...
48
0.043
9 ref|XM_476026.1| Oryza sativa (japonica cultivar-group), predic...
46
0.17
10 gb|AC130728.2| Oryza sativa (japonica cultivar-group) chromosome...
46
0.17
11 gb|AC130727.1| Oryza sativa (japonica cultivar-group) chromosome...
46
0.17
12 dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D...
46
0.17
13 dbj|AK111911.1| Oryza sativa (japonica cultivar-group) cDNA clon...
46
0.17
14 ref|XM_643963.1| Entamoeba histolytica HM-1:IMSS hypothetical pr...
44
0.66
15 gb|AC152952.1| Mus musculus 6 BAC RP23-86B3 (Roswell Park Cancer...
42
2.6
16 emb|BX842644.1| Mycoplasma mycoides subsp. mycoides SC genomic D...
42
2.6
17 emb|AJ427420.1|CGI427420 Crassostrea gigas partial mRNA for bone...
42
2.6
18 gb|AC016136.21| Homo sapiens 12 BAC RP11-1036M20 (Roswell Park C...
42
2.6
19 gb|AF107259.1|AF107259 Homo sapiens chromosome 21q22.1 cosmid cl...
42
2.6
20 dbj|BS000174.1| Pan troglodytes chromosome 22 clone:PTB-137B16, ...
42
2.6
21 dbj|AP001705.1| Homo sapiens genomic DNA, chromosome 21q, sectio...
42
2.6
22 dbj|AP000239.2| Homo sapiens genomic DNA, chromosome 21q, clone:...
42
2.6
23 emb|BX005047.5| Zebrafish DNA sequence from clone DKEY-38N1 in l...
42
2.6
24 gb|AC132614.3| Mus musculus BAC clone RP23-298K1 from 6, complet...
42
2.6
25 dbj|AP000198.1| Homo sapiens genomic DNA, chromosome 21q22.1, D2...
42
2.6
26 dbj|AP000094.1| Homo sapiens genomic DNA of 21q22.1, GART and AM...
42
2.6
>dbj|AP008207.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
sequence
Length = 43261740
Score = 155 bits (78), Expect = 3e-34
Identities = 243/298 (81%)
Strand = Plus / Minus
Query: 407 ctagtactgagccctctcatcgccgtcaaagttaagaccttcaatacctttcagagcaga 466
|||||||||| |||||||||| |||||||| |||||||||||||||||||| || |||||
Sbjct: 29429280 ctagtactgaaccctctcatccccgtcaaaattaagaccttcaatacctttgagggcaga 29429221
Query: 467 ctcgtagttcttcgggttagatgagtgccgggccgaagaggaacgctgtgcttctgcaga 526
|||||| ||||| |||||||||||| ||||| ||||| ||| ||| || |||||| ||
Sbjct: 29429220 ctcgtaattcttaacgttagatgagtgtcgggcagaagatgaatgctttggttctgccga 29429161
Query: 527 atcaaccggtgggctcctctgaggacccgaggtcctacggaatgccccagggcttgcatc 586
|| || |||| ||| |||| ||||| ||||| || || ||||||||||||||||||||
Sbjct: 29429160 attgactggtgagcttttctggggaccagaggttctccgaaatgccccagggcttgcatc 29429101
Query: 587 agtcgtgcgtgatcgtgaaggctcaaaagtgtcacttgccacagcatcccggctgcttga 646
||| | || | ||| || || ||| |||| ||| | | || |||| ||||| |||||
Sbjct: 29429100 agtggcacgagttcgagatggttcagaagtatcaataggcatcacatctcggctacttga 29429041
Query: 647 aacagcagctctccttgacgacccgcttgaccgccccaaaaaattcgagccggatatc 704
|||||||| |||||||| || || || || || ||||||||||||||| | ||||||
Sbjct: 29429040 aacagcaggcctccttgaagatccactagatcgtcccaaaaaattcgaggcagatatc 29428983
Score = 109 bits (55), Expect = 1e-20
Identities = 137/160 (85%), Gaps = 12/160 (7%)
Strand = Plus / Minus
Query: 221 cctcgggctggccgcttatttaccgtgtccaggagaagaccatcatcatctggcagtagc 280
|||| ||||| ||||||||||||||||||||| | |||||||||| ||||| |||
Sbjct: 29429441 cctcaggctgaccgcttatttaccgtgtccag---aggaccatcatc---tggcaaaagc 29429388
Query: 281 actcctcacatcctcctcgtgacatctcctgtgatccaaaactcaacaggaaatgctgtg 340
||| |||||||||||| |||| ||||||||| ||||||||||||||| ||||||||
Sbjct: 29429387 act--tcacatcctccta---acatatcctgtgatacaaaactcaacaggagatgctgtg 29429333
Query: 341 cttatctccagattatgattttatacagagcacatgtaga 380
|| |||| |||||||||||||| |||||||||||||||||
Sbjct: 29429332 ctcatctacagattatgatttt-tacagagcacatgtaga 29429294
Score = 42.1 bits (21), Expect = 2.6
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 147 gaattataaagacatttacagaacc 171
|||| ||||||||||||||||||||
Sbjct: 29429499 gaataataaagacatttacagaacc 29429475
Score = 42.1 bits (21), Expect = 2.6
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 711 tctttagaaataggagcatcatttcctacaggggctttctg 751
|||||||||| || |||||||||||| ||||| || |||||
Sbjct: 29428663 tctttagaaaaagaagcatcatttcccacaggtgccttctg 29428623
>dbj|AP003273.3 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
clone:P0510F09
Length = 138277
Score = 155 bits (78), Expect = 3e-34
Identities = 243/298 (81%)
Strand = Plus / Minus
Query: 407 ctagtactgagccctctcatcgccgtcaaagttaagaccttcaatacctttcagagcaga 466
|||||||||| |||||||||| |||||||| |||||||||||||||||||| || |||||
Sbjct: 124342 ctagtactgaaccctctcatccccgtcaaaattaagaccttcaatacctttgagggcaga 124283
Query: 467 ctcgtagttcttcgggttagatgagtgccgggccgaagaggaacgctgtgcttctgcaga 526
|||||| ||||| |||||||||||| ||||| ||||| ||| ||| || |||||| ||
Sbjct: 124282 ctcgtaattcttaacgttagatgagtgtcgggcagaagatgaatgctttggttctgccga 124223
Query: 527 atcaaccggtgggctcctctgaggacccgaggtcctacggaatgccccagggcttgcatc 586
|| || |||| ||| |||| ||||| ||||| || || ||||||||||||||||||||
Sbjct: 124222 attgactggtgagcttttctggggaccagaggttctccgaaatgccccagggcttgcatc 124163
Query: 587 agtcgtgcgtgatcgtgaaggctcaaaagtgtcacttgccacagcatcccggctgcttga 646
||| | || | ||| || || ||| |||| ||| | | || |||| ||||| |||||
Sbjct: 124162 agtggcacgagttcgagatggttcagaagtatcaataggcatcacatctcggctacttga 124103
Query: 647 aacagcagctctccttgacgacccgcttgaccgccccaaaaaattcgagccggatatc 704
|||||||| |||||||| || || || || || ||||||||||||||| | ||||||
Sbjct: 124102 aacagcaggcctccttgaagatccactagatcgtcccaaaaaattcgaggcagatatc 124045
Score = 109 bits (55), Expect = 1e-20
Identities = 137/160 (85%), Gaps = 12/160 (7%)
Strand = Plus / Minus
Query: 221 cctcgggctggccgcttatttaccgtgtccaggagaagaccatcatcatctggcagtagc 280
|||| ||||| ||||||||||||||||||||| | |||||||||| ||||| |||
Sbjct: 124503 cctcaggctgaccgcttatttaccgtgtccag---aggaccatcatc---tggcaaaagc 124450
Query: 281 actcctcacatcctcctcgtgacatctcctgtgatccaaaactcaacaggaaatgctgtg 340
||| |||||||||||| |||| ||||||||| ||||||||||||||| ||||||||
Sbjct: 124449 act--tcacatcctccta---acatatcctgtgatacaaaactcaacaggagatgctgtg 124395
Query: 341 cttatctccagattatgattttatacagagcacatgtaga 380
|| |||| |||||||||||||| |||||||||||||||||
Sbjct: 124394 ctcatctacagattatgatttt-tacagagcacatgtaga 124356
Score = 42.1 bits (21), Expect = 2.6
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 147 gaattataaagacatttacagaacc 171
|||| ||||||||||||||||||||
Sbjct: 124561 gaataataaagacatttacagaacc 124537
Score = 42.1 bits (21), Expect = 2.6
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 711 tctttagaaataggagcatcatttcctacaggggctttctg 751
|||||||||| || |||||||||||| ||||| || |||||
Sbjct: 123725 tctttagaaaaagaagcatcatttcccacaggtgccttctg 123685
>dbj|AP000198.1 | Homo sapiens genomic DNA, chromosome 21q22.1, D21S226-AML region, clone
B355D16-T1073, segment 4/8, complete sequence
Length = 100000
Score = 42.1 bits (21), Expect = 2.6
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 638 gctgcttgaaacagcagctct 658
|||||||||||||||||||||
Sbjct: 90268 gctgcttgaaacagcagctct 90248
>dbj|AP000094.1 | Homo sapiens genomic DNA of 21q22.1, GART and AML related,
B335D16-P10G11 region, segment 4/7
Length = 100000
Score = 42.1 bits (21), Expect = 2.6
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 638 gctgcttgaaacagcagctct 658
|||||||||||||||||||||
Sbjct: 90268 gctgcttgaaacagcagctct 90248
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,307,678
Number of Sequences: 3902068
Number of extensions: 6307678
Number of successful extensions: 116751
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 116601
Number of HSP's gapped (non-prelim): 147
length of query: 756
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 733
effective length of database: 17,143,297,704
effective search space: 12566037217032
effective search space used: 12566037217032
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)