ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27l07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK064988.1| Oryza sativa (japonica cultivar-group) cDNA clon... 452 e-124
2dbj|AK060749.1| Oryza sativa (japonica cultivar-group) cDNA clon... 444 e-121
3gb|AC097277.6| Oryza sativa chromosome 3 BAC OSJNBa0022C08 genom... 182 1e-42
4gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 182 1e-42
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 182 1e-42
6ref|NM_191480.1| Oryza sativa (japonica cultivar-group), predic... 44 0.61
7ref|NM_191478.1| Oryza sativa (japonica cultivar-group), predic... 44 0.61
8emb|BX000359.7| Mouse DNA sequence from clone RP23-343C18 on chr... 44 0.61
9gb|AC110794.3| Homo sapiens BAC clone RP11-598O12 from 4, comple... 44 0.61
10gb|AC129593.4| Mus musculus BAC clone RP24-142E6 from chromosome... 42 2.4
11gb|AC099589.12| Mus musculus chromosome 1, clone RP23-337A19, co... 42 2.4
12gb|AC104100.6| Mus musculus BAC clone RP24-374D12 from chromosom... 42 2.4
13gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 42 2.4
14gb|AC009263.6|AC009263 Homo sapiens clone RP11-377B19 from 7q31.... 42 2.4
15ref|NM_210994.1| Eremothecium gossypii AFR093Wp (AFR093W), mRNA 42 2.4
16emb|BX537323.9| Zebrafish DNA sequence from clone DKEYP-122E2 in... 42 2.4
17gb|AC133651.4| Mus musculus BAC clone RP24-239C15 from 1, comple... 42 2.4
18gb|AC161878.3| Mus musculus BAC clone RP23-303B4 from chromosome... 42 2.4
19gb|AC151524.2| Medicago truncatula chromosome 7 BAC clone mth2-6... 40 9.5
20gb|AC170260.2| Mus musculus BAC clone RP24-347N1 from chromosome... 40 9.5
21gb|AC114629.12| Mus musculus chromosome 1, clone RP24-111F20, co... 40 9.5
22gb|AY369378.1| Feline immunodeficiency virus isolate CaONC01 gag... 40 9.5
23gb|AF077542.1| Caenorhabditis elegans cosmid Y57G7A, complete se... 40 9.5
24emb|Z74473.1|CEF56H9 Caenorhabditis elegans Cosmid F56H9, comple... 40 9.5
25gb|AC125108.3| Mus musculus BAC clone RP24-226A8 from chromosome... 40 9.5
26gb|AC122924.2| Mus musculus BAC clone RP23-39M16 from 12, comple... 40 9.5
27gb|AC123054.2| Mus musculus BAC clone RP24-220N11 from 5, comple... 40 9.5
28gb|AC112491.4| Homo sapiens 3 BAC RP11-3P17 (Roswell Park Cancer... 40 9.5
29emb|BX927150.1| Corynebacterium glutamicum ATCC 13032, IS finger... 40 9.5
30gb|AC016839.12| Homo sapiens chromosome 18, clone RP11-399L5, co... 40 9.5
31emb|BX470127.2| Mouse DNA sequence from clone RP24-280A6 on chro... 40 9.5
32gb|AC087302.7| Homo sapiens chromosome 17, clone RP11-761L11, co... 40 9.5
33gb|AC104639.3| Homo sapiens 3q BAC RP11-672L16 (Roswell Park Can... 40 9.5
34gb|AC098680.3| Homo sapiens BAC clone RP11-600L4 from 4, complet... 40 9.5
35gb|AC026473.7| Homo sapiens chromosome 16 clone RP11-51O6, compl... 40 9.5
36ref|NM_073761.3| Caenorhabditis elegans abnormal cell LINeage fa... 40 9.5
37gb|AC009169.9| Homo sapiens chromosome 16 clone RP11-90K18, comp... 40 9.5
38dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, compl... 40 9.5
39gb|AC079776.5| Homo sapiens BAC clone RP11-315H12 from 2, comple... 40 9.5
40gb|AY190941.1| Drosophila erecta clone DERF01_12_N08 (D1431) gen... 40 9.5
41emb|BX927258.8| Zebrafish DNA sequence from clone CH211-279M15 i... 40 9.5
42emb|CR361565.8| Zebrafish DNA sequence from clone CH211-242L1 in... 40 9.5
43gb|AC006120.1|AC006120 Homo sapiens chromosome 17, clone hRPK.34... 40 9.5
44gb|AC174448.2| Mus musculus BAC clone RP23-204P24 from chromosom... 40 9.5
45emb|AL935060.17| Mouse DNA sequence from clone RP24-151H6 on chr... 40 9.5
46gb|AC162305.5| Mus musculus BAC clone RP23-470G3 from chromosome... 40 9.5
47gb|AC147029.3| Mus musculus BAC clone RP23-239P5 from 12, comple... 40 9.5
48gb|U20168.1|CEU20168 Caenorhabditis elegans Lin-25 protein (lin-... 40 9.5 
>dbj|AK064988.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001D07, full
            insert sequence
          Length = 3566

 Score =  452 bits (228), Expect = e-124
 Identities = 351/392 (89%)
 Strand = Plus / Minus

                                                                        
Query: 301  gcagccggaggaaagtcctcaggaggcatggcaaacggccgcaccatcttctcaaacttg 360
            ||||| ||||| ||||| ||||||||||| ||||| || |||||||| ||||||||||||
Sbjct: 3326 gcagctggagggaagtcttcaggaggcatcgcaaatggtcgcaccattttctcaaacttg 3267

                                                                        
Query: 361  tccagtgtcaggcaagagccaacttcctgcagtctctcggggcccattatcggcagggtg 420
            |||||||| ||||| || |||||||||||||||||||| || ||||||||||||||||||
Sbjct: 3266 tccagtgttaggcaggaaccaacttcctgcagtctctcaggccccattatcggcagggtg 3207

                                                                        
Query: 421  tgctcctggagcaacggagaagtttcactggttttgtcctcgagagggctgagatcagca 480
            |||||||||||||| | || | ||||||||||||| ||||| ||||| || |||||||||
Sbjct: 3206 tgctcctggagcaaggaagtattttcactggttttatcctctagaggactaagatcagca 3147

                                                                        
Query: 481  ccacgactgaatgtcatttcgatccggaacctttcctcatcttctaaaggaacctctgta 540
            |||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| |||
Sbjct: 3146 ccacgactaaatgtcatttcaatccggaaccttttctcatcttctaaaggaacctcagta 3087

                                                                        
Query: 541  ttttcgaacattctaagcacgatattgctcatataatcaagctccctggttctatgtagt 600
            ||||| |||||||||||||| ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 3086 ttttcaaacattctaagcacaatattactcatgtagtcaagctccctggttctatgcagt 3027

                                                                        
Query: 601  cggtccagagtactttggcagacaaggctatcctctccatgtagagactcatccaagttg 660
            ||||| | ||  ||||||||||||||||||||||| || |||||| | ||||||||||||
Sbjct: 3026 cggtctaaagcgctttggcagacaaggctatcctccccttgtagacattcatccaagttg 2967

                                            
Query: 661  caataccgaaggacattcatcaatgagtgtat 692
            ||||| |||||||||||||| || ||||||||
Sbjct: 2966 caatagcgaaggacattcattaaggagtgtat 2935



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 103  gttaccaaaattgcgcaaatggtgtcgccaccagatg 139
            ||||||||||||| ||||||||||| |||||||||||
Sbjct: 3519 gttaccaaaattgggcaaatggtgttgccaccagatg 3483
to top
>dbj|AK060749.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F12, full
            insert sequence
          Length = 1817

 Score =  444 bits (224), Expect = e-121
 Identities = 350/392 (89%)
 Strand = Plus / Minus

                                                                        
Query: 301  gcagccggaggaaagtcctcaggaggcatggcaaacggccgcaccatcttctcaaacttg 360
            ||||| ||||| ||||| ||||||||||| ||||| || |||||||| ||||||||||||
Sbjct: 1568 gcagctggagggaagtcttcaggaggcatcgcaaatggtcgcaccattttctcaaacttg 1509

                                                                        
Query: 361  tccagtgtcaggcaagagccaacttcctgcagtctctcggggcccattatcggcagggtg 420
            |||||||| ||||| || |||||||||||||||||||| || ||||||||||||||||||
Sbjct: 1508 tccagtgttaggcaggaaccaacttcctgcagtctctcaggccccattatcggcagggtg 1449

                                                                        
Query: 421  tgctcctggagcaacggagaagtttcactggttttgtcctcgagagggctgagatcagca 480
            |||||||||||||| | || | ||||||||||||| ||||| ||||| || |||||||||
Sbjct: 1448 tgctcctggagcaaggaagtattttcactggttttatcctctagaggactaagatcagca 1389

                                                                        
Query: 481  ccacgactgaatgtcatttcgatccggaacctttcctcatcttctaaaggaacctctgta 540
            |||||||| ||||||||||| ||||||||||||| |||||| |||||||||||||| |||
Sbjct: 1388 ccacgactaaatgtcatttcaatccggaaccttttctcatcctctaaaggaacctcagta 1329

                                                                        
Query: 541  ttttcgaacattctaagcacgatattgctcatataatcaagctccctggttctatgtagt 600
            ||||| |||||||||||||| ||||| ||||| || |||||||||||||||||||| |||
Sbjct: 1328 ttttcaaacattctaagcacaatattactcatgtagtcaagctccctggttctatgcagt 1269

                                                                        
Query: 601  cggtccagagtactttggcagacaaggctatcctctccatgtagagactcatccaagttg 660
            ||||| | ||  ||||||||||||||||||||||| || |||||| | ||||||||||||
Sbjct: 1268 cggtctaaagcgctttggcagacaaggctatcctccccttgtagacattcatccaagttg 1209

                                            
Query: 661  caataccgaaggacattcatcaatgagtgtat 692
            ||||| |||||||||||||| || ||||||||
Sbjct: 1208 caatagcgaaggacattcattaaggagtgtat 1177



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                 
Query: 103  gttaccaaaattgcgcaaatggtgtcgccaccagatg 139
            ||||||||||||| ||||||||||| |||||||||||
Sbjct: 1761 gttaccaaaattgggcaaatggtgttgccaccagatg 1725
to top
>gb|AC097277.6| Oryza sativa chromosome 3 BAC OSJNBa0022C08 genomic sequence, complete
             sequence
          Length = 150155

 Score =  182 bits (92), Expect = 1e-42
 Identities = 143/160 (89%)
 Strand = Plus / Plus

                                                                         
Query: 301   gcagccggaggaaagtcctcaggaggcatggcaaacggccgcaccatcttctcaaacttg 360
             ||||| ||||| ||||| ||||||||||| ||||| || |||||||| ||||||||||||
Sbjct: 92149 gcagctggagggaagtcttcaggaggcatcgcaaatggtcgcaccattttctcaaacttg 92208

                                                                         
Query: 361   tccagtgtcaggcaagagccaacttcctgcagtctctcggggcccattatcggcagggtg 420
             |||||||| ||||| || |||||||||||||||||||| || ||||||||||||||||||
Sbjct: 92209 tccagtgttaggcaggaaccaacttcctgcagtctctcaggccccattatcggcagggtg 92268

                                                     
Query: 421   tgctcctggagcaacggagaagtttcactggttttgtcct 460
             |||||||||||||| | || | ||||||||||||| ||||
Sbjct: 92269 tgctcctggagcaaggaagtattttcactggttttatcct 92308



 Score =  176 bits (89), Expect = 6e-41
 Identities = 143/161 (88%)
 Strand = Plus / Plus

                                                                         
Query: 532   acctctgtattttcgaacattctaagcacgatattgctcatataatcaagctccctggtt 591
             ||||| |||||||| |||||||||||||| ||||| ||||| || |||||||||||||||
Sbjct: 92806 acctcagtattttcaaacattctaagcacaatattactcatgtagtcaagctccctggtt 92865

                                                                         
Query: 592   ctatgtagtcggtccagagtactttggcagacaaggctatcctctccatgtagagactca 651
             ||||| |||||||| | ||  ||||||||||||||||||||||| || |||||| | |||
Sbjct: 92866 ctatgcagtcggtctaaagcgctttggcagacaaggctatcctccccttgtagacattca 92925

                                                      
Query: 652   tccaagttgcaataccgaaggacattcatcaatgagtgtat 692
             |||||||||||||| |||||||||||||| || ||||||||
Sbjct: 92926 tccaagttgcaatagcgaaggacattcattaaggagtgtat 92966



 Score =  107 bits (54), Expect = 5e-20
 Identities = 72/78 (92%)
 Strand = Plus / Plus

                                                                         
Query: 458   cctcgagagggctgagatcagcaccacgactgaatgtcatttcgatccggaacctttcct 517
             |||| ||||| || ||||||||||||||||| ||||||||||| ||||||||||||| ||
Sbjct: 92419 cctctagaggactaagatcagcaccacgactaaatgtcatttcaatccggaaccttttct 92478

                               
Query: 518   catcttctaaaggaacct 535
             ||||||||||||||||||
Sbjct: 92479 catcttctaaaggaacct 92496



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                  
Query: 103   gttaccaaaattgcgcaaatggtgtcgccaccagatg 139
             ||||||||||||| ||||||||||| |||||||||||
Sbjct: 91956 gttaccaaaattgggcaaatggtgttgccaccagatg 91992
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  182 bits (92), Expect = 1e-42
 Identities = 143/160 (89%)
 Strand = Plus / Minus

                                                                            
Query: 301      gcagccggaggaaagtcctcaggaggcatggcaaacggccgcaccatcttctcaaacttg 360
                ||||| ||||| ||||| ||||||||||| ||||| || |||||||| ||||||||||||
Sbjct: 27212246 gcagctggagggaagtcttcaggaggcatcgcaaatggtcgcaccattttctcaaacttg 27212187

                                                                            
Query: 361      tccagtgtcaggcaagagccaacttcctgcagtctctcggggcccattatcggcagggtg 420
                |||||||| ||||| || |||||||||||||||||||| || ||||||||||||||||||
Sbjct: 27212186 tccagtgttaggcaggaaccaacttcctgcagtctctcaggccccattatcggcagggtg 27212127

                                                        
Query: 421      tgctcctggagcaacggagaagtttcactggttttgtcct 460
                |||||||||||||| | || | ||||||||||||| ||||
Sbjct: 27212126 tgctcctggagcaaggaagtattttcactggttttatcct 27212087



 Score =  176 bits (89), Expect = 6e-41
 Identities = 143/161 (88%)
 Strand = Plus / Minus

                                                                            
Query: 532      acctctgtattttcgaacattctaagcacgatattgctcatataatcaagctccctggtt 591
                ||||| |||||||| |||||||||||||| ||||| ||||| || |||||||||||||||
Sbjct: 27211589 acctcagtattttcaaacattctaagcacaatattactcatgtagtcaagctccctggtt 27211530

                                                                            
Query: 592      ctatgtagtcggtccagagtactttggcagacaaggctatcctctccatgtagagactca 651
                ||||| |||||||| | ||  ||||||||||||||||||||||| || |||||| | |||
Sbjct: 27211529 ctatgcagtcggtctaaagcgctttggcagacaaggctatcctccccttgtagacattca 27211470

                                                         
Query: 652      tccaagttgcaataccgaaggacattcatcaatgagtgtat 692
                |||||||||||||| |||||||||||||| || ||||||||
Sbjct: 27211469 tccaagttgcaatagcgaaggacattcattaaggagtgtat 27211429



 Score =  107 bits (54), Expect = 5e-20
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                            
Query: 458      cctcgagagggctgagatcagcaccacgactgaatgtcatttcgatccggaacctttcct 517
                |||| ||||| || ||||||||||||||||| ||||||||||| ||||||||||||| ||
Sbjct: 27211976 cctctagaggactaagatcagcaccacgactaaatgtcatttcaatccggaaccttttct 27211917

                                  
Query: 518      catcttctaaaggaacct 535
                ||||||||||||||||||
Sbjct: 27211916 catcttctaaaggaacct 27211899



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                     
Query: 103      gttaccaaaattgcgcaaatggtgtcgccaccagatg 139
                ||||||||||||| ||||||||||| |||||||||||
Sbjct: 27212439 gttaccaaaattgggcaaatggtgttgccaccagatg 27212403
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  182 bits (92), Expect = 1e-42
 Identities = 143/160 (89%)
 Strand = Plus / Minus

                                                                            
Query: 301      gcagccggaggaaagtcctcaggaggcatggcaaacggccgcaccatcttctcaaacttg 360
                ||||| ||||| ||||| ||||||||||| ||||| || |||||||| ||||||||||||
Sbjct: 27303569 gcagctggagggaagtcttcaggaggcatcgcaaatggtcgcaccattttctcaaacttg 27303510

                                                                            
Query: 361      tccagtgtcaggcaagagccaacttcctgcagtctctcggggcccattatcggcagggtg 420
                |||||||| ||||| || |||||||||||||||||||| || ||||||||||||||||||
Sbjct: 27303509 tccagtgttaggcaggaaccaacttcctgcagtctctcaggccccattatcggcagggtg 27303450

                                                        
Query: 421      tgctcctggagcaacggagaagtttcactggttttgtcct 460
                |||||||||||||| | || | ||||||||||||| ||||
Sbjct: 27303449 tgctcctggagcaaggaagtattttcactggttttatcct 27303410



 Score =  176 bits (89), Expect = 6e-41
 Identities = 143/161 (88%)
 Strand = Plus / Minus

                                                                            
Query: 532      acctctgtattttcgaacattctaagcacgatattgctcatataatcaagctccctggtt 591
                ||||| |||||||| |||||||||||||| ||||| ||||| || |||||||||||||||
Sbjct: 27302912 acctcagtattttcaaacattctaagcacaatattactcatgtagtcaagctccctggtt 27302853

                                                                            
Query: 592      ctatgtagtcggtccagagtactttggcagacaaggctatcctctccatgtagagactca 651
                ||||| |||||||| | ||  ||||||||||||||||||||||| || |||||| | |||
Sbjct: 27302852 ctatgcagtcggtctaaagcgctttggcagacaaggctatcctccccttgtagacattca 27302793

                                                         
Query: 652      tccaagttgcaataccgaaggacattcatcaatgagtgtat 692
                |||||||||||||| |||||||||||||| || ||||||||
Sbjct: 27302792 tccaagttgcaatagcgaaggacattcattaaggagtgtat 27302752



 Score =  107 bits (54), Expect = 5e-20
 Identities = 72/78 (92%)
 Strand = Plus / Minus

                                                                            
Query: 458      cctcgagagggctgagatcagcaccacgactgaatgtcatttcgatccggaacctttcct 517
                |||| ||||| || ||||||||||||||||| ||||||||||| ||||||||||||| ||
Sbjct: 27303299 cctctagaggactaagatcagcaccacgactaaatgtcatttcaatccggaaccttttct 27303240

                                  
Query: 518      catcttctaaaggaacct 535
                ||||||||||||||||||
Sbjct: 27303239 catcttctaaaggaacct 27303222



 Score = 58.0 bits (29), Expect = 4e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                     
Query: 103      gttaccaaaattgcgcaaatggtgtcgccaccagatg 139
                ||||||||||||| ||||||||||| |||||||||||
Sbjct: 27303762 gttaccaaaattgggcaaatggtgttgccaccagatg 27303726
to top
>ref|NM_191480.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3273

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                        
Query: 478  gcaccacgactgaatgtcatttcgatccggaacctttcctcatcttctaaaggaacctct 537
            |||||||||||  |||||||||| || || |||||||     ||||| |||| |||||||
Sbjct: 2945 gcaccacgactatatgtcatttctatgcgaaacctttttgggtcttccaaagaaacctct 2886

                          
Query: 538  gtattttcgaacat 551
            ||||| ||||||||
Sbjct: 2885 gtattctcgaacat 2872
to top
>ref|NM_191478.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1020

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 61/74 (82%)
 Strand = Plus / Minus

                                                                       
Query: 478 gcaccacgactgaatgtcatttcgatccggaacctttcctcatcttctaaaggaacctct 537
           |||||||||||  |||||||||| || || |||||||     ||||| |||| |||||||
Sbjct: 716 gcaccacgactatatgtcatttctatgcgaaacctttttgggtcttccaaagaaacctct 657

                         
Query: 538 gtattttcgaacat 551
           ||||| ||||||||
Sbjct: 656 gtattctcgaacat 643
to top
>emb|BX000359.7| Mouse DNA sequence from clone RP23-343C18 on chromosome 11 Contains the
             gene for a novel helix-loop-helix DNA-binding domain
             containing protein, a novel gene, the Gosr1 gene for golgi
             SNAP receptor complex member 1 and a CpG island, complete
             sequence
          Length = 118586

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                               
Query: 511   ctttcctcatcttctaaaggaacctctgtatttt 544
             |||||||||||||| |||| ||||| ||||||||
Sbjct: 28965 ctttcctcatcttcaaaagaaacctgtgtatttt 28998
to top
>gb|AC110794.3| Homo sapiens BAC clone RP11-598O12 from 4, complete sequence
          Length = 148841

 Score = 44.1 bits (22), Expect = 0.61
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 154   tgaatattcacatgaactcatt 175
             ||||||||||||||||||||||
Sbjct: 97295 tgaatattcacatgaactcatt 97274
to top
>gb|AC129593.4| Mus musculus BAC clone RP24-142E6 from chromosome 7, complete sequence
          Length = 210291

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 568    ctcatataatcaagctccctg 588
              |||||||||||||||||||||
Sbjct: 170322 ctcatataatcaagctccctg 170302
to top
>gb|AC099589.12| Mus musculus chromosome 1, clone RP23-337A19, complete sequence
          Length = 264062

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 616   tggcagacaaggctatcctct 636
             |||||||||||||||||||||
Sbjct: 17415 tggcagacaaggctatcctct 17395
to top
>gb|AC104100.6| Mus musculus BAC clone RP24-374D12 from chromosome 7, complete sequence
          Length = 139125

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 568   ctcatataatcaagctccctg 588
             |||||||||||||||||||||
Sbjct: 39576 ctcatataatcaagctccctg 39556
to top
>gb|AE016819.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome VI,
              complete sequence
          Length = 1813164

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 613    ctttggcagacaaggctatcc 633
              |||||||||||||||||||||
Sbjct: 600182 ctttggcagacaaggctatcc 600202
to top
>gb|AC009263.6|AC009263 Homo sapiens clone RP11-377B19 from 7q31.3, complete sequence
          Length = 182502

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 9     taacatatctttgaaaatttg 29
             |||||||||||||||||||||
Sbjct: 22766 taacatatctttgaaaatttg 22746
to top
>ref|NM_210994.1| Eremothecium gossypii AFR093Wp (AFR093W), mRNA
          Length = 3396

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 613 ctttggcagacaaggctatcc 633
           |||||||||||||||||||||
Sbjct: 482 ctttggcagacaaggctatcc 502
to top
>emb|BX537323.9| Zebrafish DNA sequence from clone DKEYP-122E2 in linkage group 18,
             complete sequence
          Length = 77788

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 187   acagctttttcagccattttg 207
             |||||||||||||||||||||
Sbjct: 49707 acagctttttcagccattttg 49687
to top
>gb|AC133651.4| Mus musculus BAC clone RP24-239C15 from 1, complete sequence
          Length = 178756

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 616   tggcagacaaggctatcctct 636
             |||||||||||||||||||||
Sbjct: 78835 tggcagacaaggctatcctct 78855
to top
>gb|AC161878.3| Mus musculus BAC clone RP23-303B4 from chromosome 1, complete sequence
          Length = 169556

 Score = 42.1 bits (21), Expect = 2.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 616    tggcagacaaggctatcctct 636
              |||||||||||||||||||||
Sbjct: 164576 tggcagacaaggctatcctct 164556
to top
>gb|AC151524.2| Medicago truncatula chromosome 7 BAC clone mth2-67a20, complete
             sequence
          Length = 99692

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 47/56 (83%)
 Strand = Plus / Plus

                                                                     
Query: 474   atcagcaccacgactgaatgtcatttcgatccggaacctttcctcatcttctaaag 529
             |||||| ||||||||||| ||||  || || |||||||||| |  |||||||||||
Sbjct: 46655 atcagccccacgactgaaggtcagctcaatgcggaaccttttcggatcttctaaag 46710
to top
>gb|AC170260.2| Mus musculus BAC clone RP24-347N1 from chromosome 5, complete sequence
          Length = 165011

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 144    caaagaggaatgaatattca 163
              ||||||||||||||||||||
Sbjct: 164029 caaagaggaatgaatattca 164010
to top
>gb|AC114629.12| Mus musculus chromosome 1, clone RP24-111F20, complete sequence
          Length = 178437

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 229   aaaggccagaaactagccag 248
             ||||||||||||||||||||
Sbjct: 55114 aaaggccagaaactagccag 55095
to top
>gb|AY369378.1| Feline immunodeficiency virus isolate CaONC01 gag protein (gag)
           gene, partial cds
          Length = 1049

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 184 ttcacagctttttcagccattttg 207
           ||||||||||||||||||| ||||
Sbjct: 834 ttcacagctttttcagccaatttg 857
to top
>gb|AF077542.1| Caenorhabditis elegans cosmid Y57G7A, complete sequence
          Length = 44315

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 536   ctgtattttcgaacattcta 555
             ||||||||||||||||||||
Sbjct: 10489 ctgtattttcgaacattcta 10508
to top
>emb|Z74473.1|CEF56H9 Caenorhabditis elegans Cosmid F56H9, complete sequence
          Length = 28291

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 343   accatcttctcaaacttgtc 362
             ||||||||||||||||||||
Sbjct: 26011 accatcttctcaaacttgtc 26030
to top
>gb|AC125108.3| Mus musculus BAC clone RP24-226A8 from chromosome 10, complete sequence
          Length = 148202

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 14     tatctttgaaaatttgccta 33
              ||||||||||||||||||||
Sbjct: 115025 tatctttgaaaatttgccta 115006
to top
>gb|AC122924.2| Mus musculus BAC clone RP23-39M16 from 12, complete sequence
          Length = 228614

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 13     atatctttgaaaatttgcctacaa 36
              |||||||||| |||||||||||||
Sbjct: 148465 atatctttgagaatttgcctacaa 148488
to top
>gb|AC123054.2| Mus musculus BAC clone RP24-220N11 from 5, complete sequence
          Length = 174874

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 144   caaagaggaatgaatattca 163
             ||||||||||||||||||||
Sbjct: 62234 caaagaggaatgaatattca 62253
to top
>gb|AC112491.4| Homo sapiens 3 BAC RP11-3P17 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 154758

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 609    agtactttggcagacaaggc 628
              ||||||||||||||||||||
Sbjct: 105606 agtactttggcagacaaggc 105625
to top
>emb|BX927150.1| Corynebacterium glutamicum ATCC 13032, IS fingerprint type 4-5, complete
              genome; segment 3/10
          Length = 348475

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 329    tggcaaacggccgcaccatc 348
              ||||||||||||||||||||
Sbjct: 192493 tggcaaacggccgcaccatc 192512
to top
>gb|AC016839.12| Homo sapiens chromosome 18, clone RP11-399L5, complete sequence
          Length = 152689

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 13    atatctttgaaaatttgcct 32
             ||||||||||||||||||||
Sbjct: 78109 atatctttgaaaatttgcct 78128
to top
>emb|BX470127.2| Mouse DNA sequence from clone RP24-280A6 on chromosome 4, complete
              sequence
          Length = 142803

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 119    aaatggtgtcgccaccagatgtta 142
              ||||||||| ||||||||||||||
Sbjct: 118829 aaatggtgtagccaccagatgtta 118806
to top
>gb|AC087302.7| Homo sapiens chromosome 17, clone RP11-761L11, complete sequence
          Length = 129564

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 187   acagctttttcagccatttt 206
             ||||||||||||||||||||
Sbjct: 96068 acagctttttcagccatttt 96049
to top
>gb|AC104639.3| Homo sapiens 3q BAC RP11-672L16 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 187942

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 670    aggacattcatcaatgagtg 689
              ||||||||||||||||||||
Sbjct: 133545 aggacattcatcaatgagtg 133526
to top
>gb|AC098680.3| Homo sapiens BAC clone RP11-600L4 from 4, complete sequence
          Length = 180918

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 664   taccgaaggacattcatcaa 683
             ||||||||||||||||||||
Sbjct: 53659 taccgaaggacattcatcaa 53640
to top
>gb|AC026473.7| Homo sapiens chromosome 16 clone RP11-51O6, complete sequence
          Length = 170393

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 670   aggacattcatcaatgagtg 689
             ||||||||||||||||||||
Sbjct: 38435 aggacattcatcaatgagtg 38454
to top
>ref|NM_073761.3| Caenorhabditis elegans abnormal cell LINeage family member (lin-25)
           (lin-25) mRNA, complete cds
          Length = 3527

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 343 accatcttctcaaacttgtc 362
           ||||||||||||||||||||
Sbjct: 235 accatcttctcaaacttgtc 254
to top
>gb|AC009169.9| Homo sapiens chromosome 16 clone RP11-90K18, complete sequence
          Length = 146399

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 670   aggacattcatcaatgagtg 689
             ||||||||||||||||||||
Sbjct: 75840 aggacattcatcaatgagtg 75859
to top
>dbj|BA000036.3| Corynebacterium glutamicum ATCC 13032 DNA, complete genome
          Length = 3309401

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 329    tggcaaacggccgcaccatc 348
              ||||||||||||||||||||
Sbjct: 888880 tggcaaacggccgcaccatc 888899
to top
>gb|AC079776.5| Homo sapiens BAC clone RP11-315H12 from 2, complete sequence
          Length = 198961

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 86    ctgaaagatgaacccatgtt 105
             ||||||||||||||||||||
Sbjct: 51493 ctgaaagatgaacccatgtt 51474
to top
>gb|AY190941.1| Drosophila erecta clone DERF01_12_N08 (D1431) genomic sequence
          Length = 43101

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    tcaagatgccgggcaaaagt 67
             ||||||||||||||||||||
Sbjct: 40800 tcaagatgccgggcaaaagt 40819
to top
>emb|BX927258.8| Zebrafish DNA sequence from clone CH211-279M15 in linkage group 20,
              complete sequence
          Length = 146407

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 438    agaagtttcactggttttgt 457
              ||||||||||||||||||||
Sbjct: 131358 agaagtttcactggttttgt 131339
to top
>emb|CR361565.8| Zebrafish DNA sequence from clone CH211-242L1 in linkage group 22,
             complete sequence
          Length = 164475

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 149   aggaatgaatattcacatga 168
             ||||||||||||||||||||
Sbjct: 40322 aggaatgaatattcacatga 40341
to top
>gb|AC006120.1|AC006120 Homo sapiens chromosome 17, clone hRPK.346_K_10, complete sequence
          Length = 168753

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 187    acagctttttcagccatttt 206
              ||||||||||||||||||||
Sbjct: 141749 acagctttttcagccatttt 141768
to top
>gb|AC174448.2| Mus musculus BAC clone RP23-204P24 from chromosome 16, complete sequence
          Length = 198814

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 48     tcaagatgccgggcaaaagtacac 71
              ||||| ||||||||||||||||||
Sbjct: 186648 tcaaggtgccgggcaaaagtacac 186671
to top
>emb|AL935060.17| Mouse DNA sequence from clone RP24-151H6 on chromosome 2, complete
              sequence
          Length = 212007

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 616    tggcagacaaggctatcctc 635
              ||||||||||||||||||||
Sbjct: 173749 tggcagacaaggctatcctc 173730
to top
>gb|AC162305.5| Mus musculus BAC clone RP23-470G3 from chromosome 16, complete sequence
          Length = 208504

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 48    tcaagatgccgggcaaaagtacac 71
             ||||| ||||||||||||||||||
Sbjct: 62735 tcaaggtgccgggcaaaagtacac 62758
to top
>gb|AC147029.3| Mus musculus BAC clone RP23-239P5 from 12, complete sequence
          Length = 194385

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 13    atatctttgaaaatttgcctacaa 36
             |||||||||| |||||||||||||
Sbjct: 10209 atatctttgagaatttgcctacaa 10186
to top
>gb|U20168.1|CEU20168 Caenorhabditis elegans Lin-25 protein (lin-25) gene, complete cds
          Length = 3569

 Score = 40.1 bits (20), Expect = 9.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 343 accatcttctcaaacttgtc 362
           ||||||||||||||||||||
Sbjct: 257 accatcttctcaaacttgtc 276


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,849,310
Number of Sequences: 3902068
Number of extensions: 5849310
Number of successful extensions: 109575
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 109388
Number of HSP's gapped (non-prelim): 185
length of query: 693
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 670
effective length of database: 17,143,297,704
effective search space: 11486009461680
effective search space used: 11486009461680
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top