ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27l05 |
|---|---|
| Clone Library Name | barley_pub |
>CALX_SOYBN (Q39817) Calnexin homolog precursor| Length = 546 Score = 144 bits (364), Expect(2) = 2e-35 Identities = 70/116 (60%), Positives = 83/116 (71%) Frame = -3 Query: 703 WTMQDGILFDNILIADDEKVAMSILEKTWKPKFVVXXXXXXXXXXXXXESEDLSEFQKKI 524 WTMQDGILFDN+LIA+D+KVA S E TWKPKF V S+ +S FQKK+ Sbjct: 382 WTMQDGILFDNVLIANDDKVAESYRETTWKPKFTVEKDKLKAEEEAATGSDGISGFQKKV 441 Query: 523 FSVLYKIADIPFLEPYKIKIIDLIEKGEKQPNITISILASVAVILVTVLFRTIFGG 356 F +LYKIADIPFL +K KI DLIEK EKQPN+TI IL +V V+ V++ FR IFGG Sbjct: 442 FDLLYKIADIPFLSEHKSKIFDLIEKAEKQPNLTIGILVAVVVVFVSIFFRLIFGG 497 Score = 24.6 bits (52), Expect(2) = 2e-35 Identities = 10/13 (76%), Positives = 11/13 (84%) Frame = -2 Query: 752 LDKPDFDPIAATG 714 L KPDF+PIAA G Sbjct: 366 LAKPDFEPIAAIG 378
>CALX_PEA (O82709) Calnexin homolog precursor| Length = 551 Score = 129 bits (325), Expect(2) = 2e-31 Identities = 66/122 (54%), Positives = 81/122 (66%), Gaps = 6/122 (4%) Frame = -3 Query: 703 WTMQDGILFDNILIADDEKVAMSILEKTWKPKFVVXXXX------XXXXXXXXXESEDLS 542 WTMQDGILFDN+LIA D+K+A S E TWKPKF + ESE ++ Sbjct: 381 WTMQDGILFDNVLIAKDDKIAESYRETTWKPKFNIEKEKQKHEEEAAAAAAARSESEGIA 440 Query: 541 EFQKKIFSVLYKIADIPFLEPYKIKIIDLIEKGEKQPNITISILASVAVILVTVLFRTIF 362 QKK F +LYKIADI FL K KII++IEKGEKQPN+TI I+ SV ++ V++ FR IF Sbjct: 441 GIQKKAFDLLYKIADIAFLSGQKEKIIEIIEKGEKQPNLTIGIIVSVVIVFVSIFFRLIF 500 Query: 361 GG 356 GG Sbjct: 501 GG 502 Score = 26.2 bits (56), Expect(2) = 2e-31 Identities = 10/13 (76%), Positives = 12/13 (92%) Frame = -2 Query: 752 LDKPDFDPIAATG 714 L+KPDF+PIAA G Sbjct: 365 LEKPDFEPIAAIG 377
>CALX2_ARATH (Q38798) Calnexin homolog 2 precursor| Length = 532 Score = 131 bits (329), Expect = 3e-30 Identities = 64/137 (46%), Positives = 85/137 (62%) Frame = -3 Query: 703 WTMQDGILFDNILIADDEKVAMSILEKTWKPKFVVXXXXXXXXXXXXXESEDLSEFQKKI 524 WTMQDGILFDNILI+ DEKVA + + TWKPKF V E++ L +QKK+ Sbjct: 375 WTMQDGILFDNILISKDEKVAETYRQSTWKPKFDVEKEKQKAEDEAAGEADGLKSYQKKV 434 Query: 523 FSVLYKIADIPFLEPYKIKIIDLIEKGEKQPNITISILASVAVILVTVLFRTIFGGXXXX 344 F +LYK+ADI FL YK KI++LIEK E QPN+TI +L S+ ++ +++ F+ IFGG Sbjct: 435 FDLLYKVADISFLSAYKSKIMELIEKAETQPNLTIGVLISIVIVFLSLFFKLIFGGAKAK 494 Query: 343 XXXXXXXXXXXPSATEA 293 S +EA Sbjct: 495 VEKKKPETAAETSTSEA 511
>CALX1_ARATH (P29402) Calnexin homolog 1 precursor| Length = 530 Score = 120 bits (302), Expect(2) = 2e-28 Identities = 57/116 (49%), Positives = 76/116 (65%) Frame = -3 Query: 703 WTMQDGILFDNILIADDEKVAMSILEKTWKPKFVVXXXXXXXXXXXXXESEDLSEFQKKI 524 WTMQDGILFDNILIA DEKVA + + TWKPKF V ++ L +QK + Sbjct: 373 WTMQDGILFDNILIAKDEKVAETYRQTTWKPKFDVEKEKQKAEEEAAGSADGLKSYQKVV 432 Query: 523 FSVLYKIADIPFLEPYKIKIIDLIEKGEKQPNITISILASVAVILVTVLFRTIFGG 356 F +L K+AD+ FL YK KI +LIEK E+QPN+TI +L ++ V+ ++ + IFGG Sbjct: 433 FDLLNKVADLSFLSAYKSKITELIEKAEQQPNLTIGVLVAIVVVFFSLFLKLIFGG 488 Score = 25.4 bits (54), Expect(2) = 2e-28 Identities = 9/13 (69%), Positives = 12/13 (92%) Frame = -2 Query: 752 LDKPDFDPIAATG 714 LD+PD++PIAA G Sbjct: 357 LDRPDYEPIAAIG 369
>CALX_HELTU (Q39994) Calnexin homolog precursor| Length = 540 Score = 95.9 bits (237), Expect(2) = 9e-22 Identities = 51/119 (42%), Positives = 70/119 (58%), Gaps = 6/119 (5%) Frame = -3 Query: 694 QDGILFDNILIADDEKVA------MSILEKTWKPKFVVXXXXXXXXXXXXXESEDLSEFQ 533 QDGILFDNILIA DEK A + WK + + L Q Sbjct: 380 QDGILFDNILIASDEKTAAKSGILLGSRSLRWKKR-------NRRLKKNQPLLDGLKGIQ 432 Query: 532 KKIFSVLYKIADIPFLEPYKIKIIDLIEKGEKQPNITISILASVAVILVTVLFRTIFGG 356 K +F VLYKIAD+PFL +K+K+++LIEK E QPNITI ++ S+ V++ ++L + +FGG Sbjct: 433 KAVFDVLYKIADLPFLGDHKVKVLELIEKAETQPNITIGVIVSIIVVIFSILLKLLFGG 491 Score = 27.7 bits (60), Expect(2) = 9e-22 Identities = 12/18 (66%), Positives = 15/18 (83%) Frame = -2 Query: 752 LDKPDFDPIAATGN*DLD 699 L+KP+F+PIAA G DLD Sbjct: 361 LEKPNFEPIAAIGIEDLD 378
>CRTC_NICPL (Q40401) Calreticulin precursor| Length = 416 Score = 38.5 bits (88), Expect = 0.022 Identities = 15/29 (51%), Positives = 21/29 (72%) Frame = -3 Query: 703 WTMQDGILFDNILIADDEKVAMSILEKTW 617 W ++ G LFDNI+I DD + A +I E+TW Sbjct: 328 WQVKSGTLFDNIVICDDPEYAKAIAEETW 356
>CRTC_BETVU (O81919) Calreticulin precursor| Length = 416 Score = 37.7 bits (86), Expect = 0.038 Identities = 13/29 (44%), Positives = 20/29 (68%) Frame = -3 Query: 703 WTMQDGILFDNILIADDEKVAMSILEKTW 617 W ++ G LFDN+L+ DD + A + E+TW Sbjct: 326 WQVKSGTLFDNVLVCDDPEYAKQLAEETW 354
>CRTC1_ARATH (O04151) Calreticulin-1 precursor| Length = 425 Score = 37.7 bits (86), Expect = 0.038 Identities = 13/29 (44%), Positives = 21/29 (72%) Frame = -3 Query: 703 WTMQDGILFDNILIADDEKVAMSILEKTW 617 W ++ G LFDN+L++DD + A + E+TW Sbjct: 323 WQVKSGSLFDNVLVSDDPEYAKKLAEETW 351
>CRTC_ORYSA (Q9SLY8) Calreticulin precursor| Length = 424 Score = 37.4 bits (85), Expect = 0.050 Identities = 14/29 (48%), Positives = 20/29 (68%) Frame = -3 Query: 703 WTMQDGILFDNILIADDEKVAMSILEKTW 617 W ++ G LFDN LI DD ++A + E+TW Sbjct: 330 WQVKSGTLFDNFLITDDPELAKTFAEETW 358
>CRTC_MAIZE (Q9SP22) Calreticulin precursor| Length = 420 Score = 37.4 bits (85), Expect = 0.050 Identities = 14/29 (48%), Positives = 20/29 (68%) Frame = -3 Query: 703 WTMQDGILFDNILIADDEKVAMSILEKTW 617 W ++ G LFDNI+I DD +A + E+TW Sbjct: 326 WQVKSGTLFDNIIITDDPALAKTFAEETW 354
>CRTC_PRUAR (Q9XF98) Calreticulin precursor| Length = 421 Score = 37.0 bits (84), Expect = 0.065 Identities = 14/29 (48%), Positives = 20/29 (68%) Frame = -3 Query: 703 WTMQDGILFDNILIADDEKVAMSILEKTW 617 W ++ G LFDNILI D+ + A + E+TW Sbjct: 325 WQVKSGTLFDNILITDEPEYAKQLAEETW 353
>CRTC_BERST (Q9ZPP1) Calreticulin precursor| Length = 416 Score = 36.6 bits (83), Expect = 0.085 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = -3 Query: 703 WTMQDGILFDNILIADDEKVAMSILEKTW 617 W ++ G +FDN+LI DD A + E+TW Sbjct: 323 WQVKSGTMFDNVLICDDPDYAKKLAEETW 351
>CRTC_RICCO (P93508) Calreticulin precursor| Length = 415 Score = 36.2 bits (82), Expect = 0.11 Identities = 13/29 (44%), Positives = 20/29 (68%) Frame = -3 Query: 703 WTMQDGILFDNILIADDEKVAMSILEKTW 617 W ++ G LFDN+LI +D + A + E+TW Sbjct: 321 WQVKSGTLFDNVLICNDPEYAKQLAEETW 349
>CRTC2_ARATH (Q38858) Calreticulin-2 precursor| Length = 424 Score = 35.8 bits (81), Expect = 0.15 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = -3 Query: 703 WTMQDGILFDNILIADDEKVAMSILEKTW 617 W ++ G LFDN+LI DD A + ++TW Sbjct: 323 WQVKSGSLFDNVLICDDPDYAKKLADETW 351
>CRTC_CHLRE (Q9STD3) Calreticulin precursor| Length = 420 Score = 35.0 bits (79), Expect = 0.25 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -3 Query: 703 WTMQDGILFDNILIADDEKVAMSILEKTW 617 W ++ G +FDNIL+ DD + A E TW Sbjct: 323 WQVKSGSIFDNILVTDDLEAAKKFAEDTW 351
>CRTC3_MOUSE (Q9D9Q6) Calreticulin-3 precursor (Calreticulin-2)| Length = 380 Score = 33.9 bits (76), Expect = 0.55 Identities = 13/29 (44%), Positives = 18/29 (62%) Frame = -3 Query: 703 WTMQDGILFDNILIADDEKVAMSILEKTW 617 W ++ G +FDN LI DDE+ A + TW Sbjct: 302 WQVRSGTIFDNFLITDDEEYAEKFGKATW 330
>CRTC3_HUMAN (Q96L12) Calreticulin-3 precursor (Calreticulin-2)| Length = 384 Score = 33.9 bits (76), Expect = 0.55 Identities = 13/29 (44%), Positives = 19/29 (65%) Frame = -3 Query: 703 WTMQDGILFDNILIADDEKVAMSILEKTW 617 W ++ G +FDN LI DDE+ A + + TW Sbjct: 305 WQVRSGTIFDNFLITDDEEYADNFGKATW 333
>CALX_CAEEL (P34652) Calnexin homolog precursor| Length = 619 Score = 33.5 bits (75), Expect = 0.72 Identities = 14/32 (43%), Positives = 21/32 (65%) Frame = -3 Query: 703 WTMQDGILFDNILIADDEKVAMSILEKTWKPK 608 WTM + ILFDNILI E+ + + ++T+ K Sbjct: 419 WTMSENILFDNILITSSEEDSSDVAKQTFYVK 450
>CRTC_HUMAN (P27797) Calreticulin precursor (CRP55) (Calregulin) (HACBP)| (ERp60) (grp60) Length = 417 Score = 31.6 bits (70), Expect = 2.7 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -3 Query: 703 WTMQDGILFDNILIADDEKVAMSILEKTW 617 W ++ G +FDN LI +DE A +TW Sbjct: 319 WQVKSGTIFDNFLITNDEAYAEEFGNETW 347
>CRTC_CRIGR (Q8K3H7) Calreticulin precursor (CRP55) (Calregulin) (HACBP)| (ERp60) Length = 417 Score = 31.6 bits (70), Expect = 2.7 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -3 Query: 703 WTMQDGILFDNILIADDEKVAMSILEKTW 617 W ++ G +FDN LI +DE A +TW Sbjct: 319 WQVKSGTIFDNFLITNDEAYAEEFGNETW 347
>CRTC1_BOVIN (P52193) Calreticulin, brain isoform 1 precursor (CRP55)| (Calregulin) (HACBP) Length = 417 Score = 31.6 bits (70), Expect = 2.7 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -3 Query: 703 WTMQDGILFDNILIADDEKVAMSILEKTW 617 W ++ G +FDN LI +DE A +TW Sbjct: 319 WQVKSGTIFDNFLITNDEAYAEEFGNETW 347
>CRTC_RAT (P18418) Calreticulin precursor (CRP55) (Calregulin) (HACBP)| (ERp60) (CALBP) (Calcium-binding protein 3) (CABP3) Length = 416 Score = 31.6 bits (70), Expect = 2.7 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -3 Query: 703 WTMQDGILFDNILIADDEKVAMSILEKTW 617 W ++ G +FDN LI +DE A +TW Sbjct: 319 WQVKSGTIFDNFLITNDEAYAEEFGNETW 347
>CRTC_MOUSE (P14211) Calreticulin precursor (CRP55) (Calregulin) (HACBP)| (ERp60) Length = 416 Score = 31.6 bits (70), Expect = 2.7 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -3 Query: 703 WTMQDGILFDNILIADDEKVAMSILEKTW 617 W ++ G +FDN LI +DE A +TW Sbjct: 319 WQVKSGTIFDNFLITNDEAYAEEFGNETW 347
>SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precursor (Scavenger| receptor expressed by endothelial cells 2 protein) (SREC-II) (SRECRP-1) Length = 866 Score = 31.6 bits (70), Expect = 2.7 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 4/46 (8%) Frame = -2 Query: 413 FGLSCCHPCYCALQNHFRWQEGSGTCEA----RCCGEEAQCHGSRC 288 +G C CYC+ + Q G+ C A R C + C+ S C Sbjct: 177 WGAQCASACYCSATSRCDPQTGACLCHAGWWGRSCNNQCACNSSPC 222
>CRTC_RABIT (P15253) Calreticulin precursor (CRP55) (Calregulin) (HACBP)| (ERp60) Length = 418 Score = 31.6 bits (70), Expect = 2.7 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -3 Query: 703 WTMQDGILFDNILIADDEKVAMSILEKTW 617 W ++ G +FDN LI +DE A +TW Sbjct: 319 WQVKSGTIFDNFLITNDEAYAEEFGNETW 347
>CRTC2_BOVIN (P42918) Calreticulin, brain isoform 2 precursor (CRP55)| (Calregulin) (HACBP) Length = 421 Score = 31.6 bits (70), Expect = 2.7 Identities = 12/29 (41%), Positives = 17/29 (58%) Frame = -3 Query: 703 WTMQDGILFDNILIADDEKVAMSILEKTW 617 W ++ G +FDN LI +DE A +TW Sbjct: 323 WQVKSGTIFDNFLITNDEAYAEEFGNETW 351
>CRTC3_ARATH (O04153) Calreticulin-3 precursor| Length = 424 Score = 31.2 bits (69), Expect = 3.6 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = -3 Query: 703 WTMQDGILFDNILIADDEKVAMSILE 626 W ++ G +FDNILI DD A SI++ Sbjct: 329 WQVKAGSIFDNILICDDPAYARSIVD 354
>CRTC_SCHMA (Q06814) Calreticulin precursor (SM4 protein)| Length = 393 Score = 31.2 bits (69), Expect = 3.6 Identities = 12/33 (36%), Positives = 18/33 (54%) Frame = -3 Query: 703 WTMQDGILFDNILIADDEKVAMSILEKTWKPKF 605 W + G +FDNILI D A E+ W+ ++ Sbjct: 317 WQVDSGSIFDNILITDSPDFAKEEGERLWRKRY 349
>KRA56_HUMAN (Q6L8G9) Keratin-associated protein 5-6 (Keratin-associated protein| 5.6) (Ultrahigh sulfur keratin-associated protein 5.6) Length = 129 Score = 30.8 bits (68), Expect = 4.7 Identities = 12/28 (42%), Positives = 15/28 (53%) Frame = -2 Query: 404 SCCHPCYCALQNHFRWQEGSGTCEARCC 321 SCC PCYC+ GS C++ CC Sbjct: 89 SCCKPCYCSSGC------GSSCCQSSCC 110
>SYFA_METJA (Q57911) Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)| (Phenylalanine--tRNA ligase alpha chain) (PheRS) Length = 480 Score = 30.8 bits (68), Expect = 4.7 Identities = 26/83 (31%), Positives = 41/83 (49%) Frame = -3 Query: 685 ILFDNILIADDEKVAMSILEKTWKPKFVVXXXXXXXXXXXXXESEDLSEFQKKIFSVLYK 506 I+FDN+ D + V +L+K + K++ +D SE +KKI +L K Sbjct: 118 IIFDNL---DYKDVEEQLLQKIKENKYL----------------DDFSEEEKKIIDILKK 158 Query: 505 IADIPFLEPYKIKIIDLIEKGEK 437 + F E +IK I L EKG++ Sbjct: 159 RGYVDFDEEKEIK-IKLTEKGKE 180
>CALX_SCHPO (P36581) Calnexin homolog precursor| Length = 560 Score = 30.8 bits (68), Expect = 4.7 Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 6/116 (5%) Frame = -3 Query: 703 WTMQDGILFDNILIADDEKVAMSILEKTWKPKFVVXXXXXXXXXXXXXESEDLSEFQKKI 524 WTMQ I F NI + + A + +T+ PK +S + E +I Sbjct: 393 WTMQPNIRFSNIYVGHSIEDAERLGNETFLPKLKAERELLSKQESMEKQSMHVDEESNQI 452 Query: 523 FSVLYKIADI--PFLEPYKIKIID-LIEKGEKQPNITISILA---SVAVILVTVLF 374 + DI L P + +D +E + P I I+I+A S+ +++T F Sbjct: 453 LEKFLDVYDIIKAKLPPNVAEKVDYYVETIIETPEIGIAIVAVLGSLTAVILTCYF 508
>FA35A_PONPY (Q5RCM2) Protein FAM35A| Length = 904 Score = 30.4 bits (67), Expect = 6.1 Identities = 22/113 (19%), Positives = 49/113 (43%), Gaps = 3/113 (2%) Frame = -3 Query: 691 DGILFDNILIADDEKVAMSILEKTWKPKFVVXXXXXXXX---XXXXXESEDLSEFQKKIF 521 D IL +++I +D+ V ++L+ T+ + + L + + Sbjct: 503 DIILLTDVVIREDQWVGETVLQSTFSSQLLNLGSYSSIQPEEYSSVVSDVVLQDLLAYVS 562 Query: 520 SVLYKIADIPFLEPYKIKIIDLIEKGEKQPNITISILASVAVILVTVLFRTIF 362 S + D+P +P ++ ID +E QP++ + A + V+ T+L ++ Sbjct: 563 SKHSYLRDLPPRQPQRVNSIDFVELEHLQPDVLVH--AVLRVVDFTILTEAVY 613
>ZNF77_HUMAN (Q15935) Zinc finger protein 77 (ZNFpT1)| Length = 545 Score = 30.4 bits (67), Expect = 6.1 Identities = 10/32 (31%), Positives = 17/32 (53%) Frame = -2 Query: 389 CYCALQNHFRWQEGSGTCEARCCGEEAQCHGS 294 CY + ++H R G C+ + CG+ C+ S Sbjct: 307 CYSSFRDHVRTHTGEKPCQCKHCGKAFTCYSS 338 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,379,331 Number of Sequences: 219361 Number of extensions: 1264237 Number of successful extensions: 3771 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 3597 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3764 length of database: 80,573,946 effective HSP length: 110 effective length of database: 56,444,236 effective search space used: 7902193040 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
