ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27k24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470477.1| Oryza sativa (japonica cultivar-group), mRNA 204 2e-49
2dbj|AK071750.1| Oryza sativa (japonica cultivar-group) cDNA clon... 204 2e-49
3dbj|AK104733.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 5e-47
4dbj|AK061449.1| Oryza sativa (japonica cultivar-group) cDNA clon... 196 5e-47
5gb|AC128647.8| Oryza sativa (japonica cultivar-group) chromosome... 155 2e-34
6gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 155 2e-34
7gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genom... 155 2e-34
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 155 2e-34
9gb|AY149882.1| Ananas comosus polyphenol oxidase (PPO2) gene, co... 58 3e-05
10gb|AF261958.1|AF261958 Ananas comosus polyphenol oxidase mRNA, p... 58 3e-05
11gb|AE005983.1| Caulobacter crescentus CB15 section 309 of 359 of... 48 0.031
12gb|AF119361.1|AF119361 Frankia sp. EuIK1 NifK (nifK), NifE (nifE... 46 0.12
13gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chr... 44 0.48
14ref|XM_572001.1| Cryptococcus neoformans var. neoformans JEC21 c... 44 0.48
15gb|AC109646.6| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
16gb|AC122669.6| Rattus norvegicus 4 BAC CH230-172C22 (Children's ... 42 1.9
17gb|AF182374.6| Bradyrhizobium sp. ORS278 photosynthetic gene clu... 42 1.9
18gb|CP000088.1| Thermobifida fusca YX, complete genome 42 1.9
19emb|AJ632270.1| Actinoplanes teichomyceticus teicoplanin gene cl... 42 1.9
20gb|AC116662.1| Rattus norvegicus, clone RP31-256A2, complete seq... 42 1.9
21dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.9
22gb|AY059630.2| Toxoplasma gondii carbamoyl phosphate synthetase ... 42 1.9
23gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.9
24gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome 40 7.5
25gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome 40 7.5
26ref|XM_590344.2| PREDICTED: Bos taurus similar to plexin A1 (LOC... 40 7.5
27gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome 40 7.5
28gb|AC139578.4| Mus musculus BAC clone RP23-188P12 from chromosom... 40 7.5
29ref|XM_953743.1| Neurospora crassa OR74A hypothetical protein (N... 40 7.5
30ref|XM_331289.1| Neurospora crassa OR74A hypothetical protein (N... 40 7.5
31gb|AY437641.1| Leptosphaeria maculans serine/threonine kinase (S... 40 7.5
32emb|CR931997.1| Corynebacterium jeikeium K411 complete genome 40 7.5
33emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome... 40 7.5
34emb|BX294091.1|NCB14A21 Neurospora crassa DNA linkage group V BA... 40 7.5
35emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 compl... 40 7.5
36gb|AC120797.9| Mus musculus chromosome 18, clone RP24-81D18, com... 40 7.5
37gb|AC022276.35| Homo sapiens 12 BAC RP11-161A14 (Roswell Park Ca... 40 7.5
38ref|NM_143700.3| Drosophila melanogaster CG17724-RA, transcript ... 40 7.5
39gb|AY070882.1| Drosophila melanogaster LD16673 full length cDNA 40 7.5
40gb|AC099026.1| Drosophila melanogaster, chromosome 2R, region 49... 40 7.5
41gb|AY060442.1| Drosophila melanogaster LD47433 full length cDNA 40 7.5
42gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome 40 7.5
43gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10... 40 7.5
44gb|AY129331.1| Mycobacteriophage CJW1, complete genome 40 7.5
45gb|AC006247.12|AC006247 Drosophila melanogaster, chromosome 2R, ... 40 7.5
46dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 40 7.5
47dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 40 7.5
48dbj|AK110015.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 7.5
49ref|NM_209798.1| Eremothecium gossypii ADR349Wp (ADR349W), mRNA 40 7.5
50gb|AY105772.1| Zea mays PCO147980 mRNA sequence 40 7.5
51gb|AE003819.3| Drosophila melanogaster chromosome 2R, section 31... 40 7.5
52gb|AC005471.1|AC005471 Drosophila melanogaster, chromosome 2R, r... 40 7.5
53gb|U26427.1|ABU26427 Azospirillum brasilense ATP-binding protein... 40 7.5
54gb|AF018954.1|AF018954 Rhodospirillum rubrum chlorin reductase s... 40 7.5
55gb|U62660.1|TGU62660 Toxoplasma gondii micronemal protein MIC2, ... 40 7.5
56gb|L34354.1|AZSNIFU Azospirillum brasilense nitrogen fixation pr... 40 7.5 
>ref|XM_470477.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1330

 Score =  204 bits (103), Expect = 2e-49
 Identities = 175/199 (87%)
 Strand = Plus / Minus

                                                                        
Query: 195  gggatgatgagcccgaaccctccctccttcctcttgtacaggatgttcacctcgcctgtc 254
            |||| |||||| ||||| ||||| ||||||||||||||||||| ||||| ||| || |||
Sbjct: 1055 gggacgatgagaccgaagcctccttccttcctcttgtacaggacgttcatctccccggtc 996

                                                                        
Query: 255  tgctcgttcctgaaggcgtagaagtcatggtcgacgttctcgagctgctccagcgcctcg 314
            | |||||  ||||||||||||||||  ||||| || ||| | |||||||||| |||||| 
Sbjct: 995  ttctcgtctctgaaggcgtagaagttgtggtccacattcactagctgctccatcgcctcc 936

                                                                        
Query: 315  tccaccgtcagcggcgccatctcgaacaccttggtgcgcacaaccttggtgagcacggtc 374
            ||||||| |||||||| |||||||||||||||||||||||| |||||||||||||| || 
Sbjct: 935  tccaccgacagcggcggcatctcgaacaccttggtgcgcaccaccttggtgagcaccgtg 876

                               
Query: 375  tcctcgtcctcggcgccga 393
            |||||||||||||||||||
Sbjct: 875  tcctcgtcctcggcgccga 857



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                    
Query: 488 cttggtgcccttgaggtggcgcacgtccgtctccttctncttgatcttgcggagctt 544
           |||||| |||||||||||||| ||||| |||||||||| ||||||||| | ||||||
Sbjct: 771 cttggtccccttgaggtggcggacgtcggtctccttctccttgatcttcctgagctt 715
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>dbj|AK071750.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023111O04, full
           insert sequence
          Length = 1206

 Score =  204 bits (103), Expect = 2e-49
 Identities = 175/199 (87%)
 Strand = Plus / Minus

                                                                       
Query: 195 gggatgatgagcccgaaccctccctccttcctcttgtacaggatgttcacctcgcctgtc 254
           |||| |||||| ||||| ||||| ||||||||||||||||||| ||||| ||| || |||
Sbjct: 922 gggacgatgagaccgaagcctccttccttcctcttgtacaggacgttcatctccccggtc 863

                                                                       
Query: 255 tgctcgttcctgaaggcgtagaagtcatggtcgacgttctcgagctgctccagcgcctcg 314
           | |||||  ||||||||||||||||  ||||| || ||| | |||||||||| |||||| 
Sbjct: 862 ttctcgtctctgaaggcgtagaagttgtggtccacattcactagctgctccatcgcctcc 803

                                                                       
Query: 315 tccaccgtcagcggcgccatctcgaacaccttggtgcgcacaaccttggtgagcacggtc 374
           ||||||| |||||||| |||||||||||||||||||||||| |||||||||||||| || 
Sbjct: 802 tccaccgacagcggcggcatctcgaacaccttggtgcgcaccaccttggtgagcaccgtg 743

                              
Query: 375 tcctcgtcctcggcgccga 393
           |||||||||||||||||||
Sbjct: 742 tcctcgtcctcggcgccga 724



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                    
Query: 488 cttggtgcccttgaggtggcgcacgtccgtctccttctncttgatcttgcggagctt 544
           |||||| |||||||||||||| ||||| |||||||||| ||||||||| | ||||||
Sbjct: 638 cttggtccccttgaggtggcggacgtcggtctccttctccttgatcttcctgagctt 582
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>dbj|AK104733.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-038-C09, full
            insert sequence
          Length = 1330

 Score =  196 bits (99), Expect = 5e-47
 Identities = 174/199 (87%)
 Strand = Plus / Minus

                                                                        
Query: 195  gggatgatgagcccgaaccctccctccttcctcttgtacaggatgttcacctcgcctgtc 254
            |||| |||||| ||||| ||||| ||||||||||||||||||| ||||| ||| || |||
Sbjct: 1055 gggacgatgagaccgaagcctccttccttcctcttgtacaggacgttcatctccccggtc 996

                                                                        
Query: 255  tgctcgttcctgaaggcgtagaagtcatggtcgacgttctcgagctgctccagcgcctcg 314
            | |||||  ||||||||||||||||  ||||| || ||| | |||||||||| |||||| 
Sbjct: 995  ttctcgtctctgaaggcgtagaagttgtggtccacattcactagctgctccatcgcctcc 936

                                                                        
Query: 315  tccaccgtcagcggcgccatctcgaacaccttggtgcgcacaaccttggtgagcacggtc 374
            ||||| | |||||||| |||||||||||||||||||||||| |||||||||||||| || 
Sbjct: 935  tccactgacagcggcggcatctcgaacaccttggtgcgcaccaccttggtgagcaccgtg 876

                               
Query: 375  tcctcgtcctcggcgccga 393
            |||||||||||||||||||
Sbjct: 875  tcctcgtcctcggcgccga 857



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                    
Query: 488 cttggtgcccttgaggtggcgcacgtccgtctccttctncttgatcttgcggagctt 544
           |||||| |||||||||||||| ||||| |||||||||| ||||||||| | ||||||
Sbjct: 771 cttggtccccttgaggtggcggacgtcggtctccttctccttgatcttcctgagctt 715
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>dbj|AK061449.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-307-E04, full
            insert sequence
          Length = 1330

 Score =  196 bits (99), Expect = 5e-47
 Identities = 174/199 (87%)
 Strand = Plus / Minus

                                                                        
Query: 195  gggatgatgagcccgaaccctccctccttcctcttgtacaggatgttcacctcgcctgtc 254
            |||| |||||| ||||| ||||| ||||||||||||||||||| ||||| ||| || |||
Sbjct: 1055 gggacgatgagaccgaagcctccttccttcctcttgtacaggacgttcatctccccggtc 996

                                                                        
Query: 255  tgctcgttcctgaaggcgtagaagtcatggtcgacgttctcgagctgctccagcgcctcg 314
            | |||||  ||||||||||||||||  ||||| || ||| | |||||||||| |||||| 
Sbjct: 995  ttctcgtctctgaaggcgtagaagttgtggtccacattcactagctgctccatcgcctcc 936

                                                                        
Query: 315  tccaccgtcagcggcgccatctcgaacaccttggtgcgcacaaccttggtgagcacggtc 374
            ||||| | |||||||| |||||||||||||||||||||||| |||||||||||||| || 
Sbjct: 935  tccactgacagcggcggcatctcgaacaccttggtgcgcaccaccttggtgagcaccgtg 876

                               
Query: 375  tcctcgtcctcggcgccga 393
            |||||||||||||||||||
Sbjct: 875  tcctcgtcctcggcgccga 857



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                    
Query: 488 cttggtgcccttgaggtggcgcacgtccgtctccttctncttgatcttgcggagctt 544
           |||||| |||||||||||||| ||||| |||||||||| ||||||||| | ||||||
Sbjct: 771 cttggtccccttgaggtggcggacgtcggtctccttctccttgatcttcctgagctt 715
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>gb|AC128647.8| Oryza sativa (japonica cultivar-group) chromosome 3 clone
             OSJNBb0062G19, complete sequence
          Length = 92392

 Score =  155 bits (78), Expect = 2e-34
 Identities = 144/166 (86%)
 Strand = Plus / Minus

                                                                         
Query: 195   gggatgatgagcccgaaccctccctccttcctcttgtacaggatgttcacctcgcctgtc 254
             |||| |||||| ||||| ||||| ||||||||||||||||||| ||||| ||| || |||
Sbjct: 84299 gggacgatgagaccgaagcctccttccttcctcttgtacaggacgttcatctccccggtc 84240

                                                                         
Query: 255   tgctcgttcctgaaggcgtagaagtcatggtcgacgttctcgagctgctccagcgcctcg 314
             | |||||  ||||||||||||||||  ||||| || ||| | |||||||||| |||||| 
Sbjct: 84239 ttctcgtctctgaaggcgtagaagttgtggtccacattcactagctgctccatcgcctcc 84180

                                                           
Query: 315   tccaccgtcagcggcgccatctcgaacaccttggtgcgcacaacct 360
             ||||||| |||||||| |||||||||||||||||||||||| ||||
Sbjct: 84179 tccaccgacagcggcggcatctcgaacaccttggtgcgcaccacct 84134



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                      
Query: 488   cttggtgcccttgaggtggcgcacgtccgtctccttctncttgatcttgcggagctt 544
             |||||| |||||||||||||| ||||| |||||||||| ||||||||| | ||||||
Sbjct: 83939 cttggtccccttgaggtggcggacgtcggtctccttctccttgatcttcctgagctt 83883



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                  
Query: 357   accttggtgagcacggtctcctcgtcctcggcgccga 393
             |||||||||||||| || |||||||||||||||||||
Sbjct: 84061 accttggtgagcaccgtgtcctcgtcctcggcgccga 84025
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  155 bits (78), Expect = 2e-34
 Identities = 144/166 (86%)
 Strand = Plus / Minus

                                                                            
Query: 195      gggatgatgagcccgaaccctccctccttcctcttgtacaggatgttcacctcgcctgtc 254
                |||| |||||| ||||| ||||| ||||||||||||||||||| ||||| ||| || |||
Sbjct: 35830360 gggacgatgagaccgaagcctccttccttcctcttgtacaggacgttcatctccccggtc 35830301

                                                                            
Query: 255      tgctcgttcctgaaggcgtagaagtcatggtcgacgttctcgagctgctccagcgcctcg 314
                | |||||  ||||||||||||||||  ||||| || ||| | |||||||||| |||||| 
Sbjct: 35830300 ttctcgtctctgaaggcgtagaagttgtggtccacattcactagctgctccatcgcctcc 35830241

                                                              
Query: 315      tccaccgtcagcggcgccatctcgaacaccttggtgcgcacaacct 360
                ||||||| |||||||| |||||||||||||||||||||||| ||||
Sbjct: 35830240 tccaccgacagcggcggcatctcgaacaccttggtgcgcaccacct 35830195



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                         
Query: 488      cttggtgcccttgaggtggcgcacgtccgtctccttctncttgatcttgcggagctt 544
                |||||| |||||||||||||| ||||| |||||||||| ||||||||| | ||||||
Sbjct: 35830000 cttggtccccttgaggtggcggacgtcggtctccttctccttgatcttcctgagctt 35829944



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                     
Query: 357      accttggtgagcacggtctcctcgtcctcggcgccga 393
                |||||||||||||| || |||||||||||||||||||
Sbjct: 35830122 accttggtgagcaccgtgtcctcgtcctcggcgccga 35830086
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>gb|AC096690.5| Oryza sativa chromosome 3 BAC OSJNBa0059G06 genomic sequence, complete
              sequence
          Length = 145115

 Score =  155 bits (78), Expect = 2e-34
 Identities = 144/166 (86%)
 Strand = Plus / Plus

                                                                          
Query: 195    gggatgatgagcccgaaccctccctccttcctcttgtacaggatgttcacctcgcctgtc 254
              |||| |||||| ||||| ||||| ||||||||||||||||||| ||||| ||| || |||
Sbjct: 130765 gggacgatgagaccgaagcctccttccttcctcttgtacaggacgttcatctccccggtc 130824

                                                                          
Query: 255    tgctcgttcctgaaggcgtagaagtcatggtcgacgttctcgagctgctccagcgcctcg 314
              | |||||  ||||||||||||||||  ||||| || ||| | |||||||||| |||||| 
Sbjct: 130825 ttctcgtctctgaaggcgtagaagttgtggtccacattcactagctgctccatcgcctcc 130884

                                                            
Query: 315    tccaccgtcagcggcgccatctcgaacaccttggtgcgcacaacct 360
              ||||||| |||||||| |||||||||||||||||||||||| ||||
Sbjct: 130885 tccaccgacagcggcggcatctcgaacaccttggtgcgcaccacct 130930



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 51/57 (89%)
 Strand = Plus / Plus

                                                                       
Query: 488    cttggtgcccttgaggtggcgcacgtccgtctccttctncttgatcttgcggagctt 544
              |||||| |||||||||||||| ||||| |||||||||| ||||||||| | ||||||
Sbjct: 131125 cttggtccccttgaggtggcggacgtcggtctccttctccttgatcttcctgagctt 131181



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                   
Query: 357    accttggtgagcacggtctcctcgtcctcggcgccga 393
              |||||||||||||| || |||||||||||||||||||
Sbjct: 131003 accttggtgagcaccgtgtcctcgtcctcggcgccga 131039
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  155 bits (78), Expect = 2e-34
 Identities = 144/166 (86%)
 Strand = Plus / Minus

                                                                            
Query: 195      gggatgatgagcccgaaccctccctccttcctcttgtacaggatgttcacctcgcctgtc 254
                |||| |||||| ||||| ||||| ||||||||||||||||||| ||||| ||| || |||
Sbjct: 35920490 gggacgatgagaccgaagcctccttccttcctcttgtacaggacgttcatctccccggtc 35920431

                                                                            
Query: 255      tgctcgttcctgaaggcgtagaagtcatggtcgacgttctcgagctgctccagcgcctcg 314
                | |||||  ||||||||||||||||  ||||| || ||| | |||||||||| |||||| 
Sbjct: 35920430 ttctcgtctctgaaggcgtagaagttgtggtccacattcactagctgctccatcgcctcc 35920371

                                                              
Query: 315      tccaccgtcagcggcgccatctcgaacaccttggtgcgcacaacct 360
                ||||||| |||||||| |||||||||||||||||||||||| ||||
Sbjct: 35920370 tccaccgacagcggcggcatctcgaacaccttggtgcgcaccacct 35920325



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                         
Query: 488      cttggtgcccttgaggtggcgcacgtccgtctccttctncttgatcttgcggagctt 544
                |||||| |||||||||||||| ||||| |||||||||| ||||||||| | ||||||
Sbjct: 35920130 cttggtccccttgaggtggcggacgtcggtctccttctccttgatcttcctgagctt 35920074



 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 35/37 (94%)
 Strand = Plus / Minus

                                                     
Query: 357      accttggtgagcacggtctcctcgtcctcggcgccga 393
                |||||||||||||| || |||||||||||||||||||
Sbjct: 35920252 accttggtgagcaccgtgtcctcgtcctcggcgccga 35920216
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>gb|AY149882.1| Ananas comosus polyphenol oxidase (PPO2) gene, complete cds
          Length = 3930

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                         
Query: 365  gagcacggtctcctcgtcctcggcgccgatgacctcgaccaggtc 409
            ||||||| |||| |||||||||||||||||| |||||| ||||||
Sbjct: 3465 gagcacgctctcgtcgtcctcggcgccgatgtcctcgagcaggtc 3421
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>gb|AF261958.1|AF261958 Ananas comosus polyphenol oxidase mRNA, partial cds
          Length = 1319

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 41/45 (91%)
 Strand = Plus / Minus

                                                        
Query: 365 gagcacggtctcctcgtcctcggcgccgatgacctcgaccaggtc 409
           ||||||| |||| |||||||||||||||||| |||||| ||||||
Sbjct: 984 gagcacgctctcgtcgtcctcggcgccgatgtcctcgagcaggtc 940
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>gb|AE005983.1| Caulobacter crescentus CB15 section 309 of 359 of the complete genome
          Length = 13041

 Score = 48.1 bits (24), Expect = 0.031
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                    
Query: 381  tcctcggcgccgatgacctcgacc 404
            ||||||||||||||||||||||||
Sbjct: 5449 tcctcggcgccgatgacctcgacc 5472
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>gb|AF119361.1|AF119361 Frankia sp. EuIK1 NifK (nifK), NifE (nifE), NifN (nifN), NifX (nifX),
            NifW (nifW), NifZ (nifZ), NifB (nifB), NifV (nifV), NifS
            (nifS), ferredoxin oxidoreductase a-subunit, ferredoxin
            oxidoreductase b-subunit, and ferredoxin I (fdxI) genes,
            complete cds; and unknown genes
          Length = 15056

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                       
Query: 298  gctgctccagcgcctcgtccaccgtca 324
            ||||||||||||||||| |||||||||
Sbjct: 9174 gctgctccagcgcctcggccaccgtca 9200
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>gb|AE017347.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7, complete
              sequence
          Length = 1347793

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 403    ccaggtcgtcctcctcgagctc 424
              ||||||||||||||||||||||
Sbjct: 723471 ccaggtcgtcctcctcgagctc 723492
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>ref|XM_572001.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 7
          Length = 608

 Score = 44.1 bits (22), Expect = 0.48
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 403 ccaggtcgtcctcctcgagctc 424
           ||||||||||||||||||||||
Sbjct: 263 ccaggtcgtcctcctcgagctc 242
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>gb|AC109646.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0017K22, complete sequence
          Length = 176399

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 372   gtctcctcgtcctcggcgccg 392
             |||||||||||||||||||||
Sbjct: 46935 gtctcctcgtcctcggcgccg 46955
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>gb|AC122669.6| Rattus norvegicus 4 BAC CH230-172C22 (Children's Hospital Oakland
             Research Institute) complete sequence
          Length = 227955

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 80    aaaaacagaccaactaatgcagcta 104
             |||||||||||||||| ||||||||
Sbjct: 54463 aaaaacagaccaactactgcagcta 54487
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>gb|AF182374.6| Bradyrhizobium sp. ORS278 photosynthetic gene cluser, complete
             sequence; and bacteriophytochrome (bphP), PpsR protein
             (ppsR), cytochrome C2 (cycA), geranylgeranyl
             bacteriochlorophyll reductase (bchP), light harvesting
             pigment major facilitator family (bch2),
             geranylgeranyl-bacteriochlorophyll synthetase (bchG),
             PpsR1 (ppsR1), and transcriptional regulator, AerR (aerR)
             genes, complete cds; and 2-vinyl bacteriochlorophillide
             hydratase BchF subunit (bchF) gene, partial cds
          Length = 30040

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 383   ctcggcgccgatgacctcgaccagg 407
             ||||||||||||| |||||||||||
Sbjct: 12593 ctcggcgccgatgccctcgaccagg 12569
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>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 301     gctccagcgcctcgtccaccg 321
               |||||||||||||||||||||
Sbjct: 1821156 gctccagcgcctcgtccaccg 1821176
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>emb|AJ632270.1| Actinoplanes teichomyceticus teicoplanin gene cluster
          Length = 89976

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 301   gctccagcgcctcgtccaccg 321
             |||||||||||||||||||||
Sbjct: 89100 gctccagcgcctcgtccaccg 89080
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>gb|AC116662.1| Rattus norvegicus, clone RP31-256A2, complete sequence
          Length = 112570

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 80    aaaaacagaccaactaatgcagcta 104
             |||||||||||||||| ||||||||
Sbjct: 60784 aaaaacagaccaactactgcagcta 60760
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 372      gtctcctcgtcctcggcgccg 392
                |||||||||||||||||||||
Sbjct: 15992245 gtctcctcgtcctcggcgccg 15992265
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>gb|AY059630.2| Toxoplasma gondii carbamoyl phosphate synthetase II gene, complete cds
          Length = 27377

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 369   acggtctcctcgtcctcggcg 389
             |||||||||||||||||||||
Sbjct: 12737 acggtctcctcgtcctcggcg 12717
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                     
Query: 372      gtctcctcgtcctcggcgccg 392
                |||||||||||||||||||||
Sbjct: 16085427 gtctcctcgtcctcggcgccg 16085447
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>gb|CP000094.1| Pseudomonas fluorescens PfO-1, complete genome
          Length = 6438405

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 374     ctcctcgtcctcggcgccga 393
               ||||||||||||||||||||
Sbjct: 2785832 ctcctcgtcctcggcgccga 2785813
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>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome
          Length = 4403837

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 304     ccagcgcctcgtccaccgtc 323
               ||||||||||||||||||||
Sbjct: 1128456 ccagcgcctcgtccaccgtc 1128437
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>ref|XM_590344.2| PREDICTED: Bos taurus similar to plexin A1 (LOC512770), mRNA
          Length = 2178

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 242 cacctcgcctgtctgctcgt 261
           ||||||||||||||||||||
Sbjct: 624 cacctcgcctgtctgctcgt 605
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>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome
          Length = 3345170

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 497     cttgaggtggcgcacgtccgtctc 520
               |||||||||||||||| |||||||
Sbjct: 2662377 cttgaggtggcgcacgaccgtctc 2662354
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>gb|AC139578.4| Mus musculus BAC clone RP23-188P12 from chromosome 18, complete sequence
          Length = 179415

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 218    ctccttcctcttgtacagga 237
              ||||||||||||||||||||
Sbjct: 156013 ctccttcctcttgtacagga 156032
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>ref|XM_953743.1| Neurospora crassa OR74A hypothetical protein (NCU08898.1) partial
           mRNA
          Length = 2355

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 142 cggggtgctccttggcgttgacggtggccttg 173
           ||||||| ||| ||||| ||||||||||||||
Sbjct: 976 cggggtgttccatggcggtgacggtggccttg 945
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>ref|XM_331289.1| Neurospora crassa OR74A hypothetical protein (NCU08898.1) partial
           mRNA
          Length = 2355

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                           
Query: 142 cggggtgctccttggcgttgacggtggccttg 173
           ||||||| ||| ||||| ||||||||||||||
Sbjct: 976 cggggtgttccatggcggtgacggtggccttg 945
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>gb|AY437641.1| Leptosphaeria maculans serine/threonine kinase (ST1) gene, complete
            cds; two component histidine kinase 1 (HK1) gene,
            complete cds, alternatively spliced; and dehydrogenase
            and RNA binding protein genes, complete cds
          Length = 10313

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 372  gtctcctcgtcctcggcgcc 391
            ||||||||||||||||||||
Sbjct: 9733 gtctcctcgtcctcggcgcc 9752
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>emb|CR931997.1| Corynebacterium jeikeium K411 complete genome
          Length = 2462499

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 301     gctccagcgcctcgtccacc 320
               ||||||||||||||||||||
Sbjct: 2175035 gctccagcgcctcgtccacc 2175054
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>emb|BX842575.1| Mycobacterium tuberculosis H37Rv complete genome; segment 4/13
          Length = 349306

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 304   ccagcgcctcgtccaccgtc 323
             ||||||||||||||||||||
Sbjct: 94625 ccagcgcctcgtccaccgtc 94606
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>emb|BX294091.1|NCB14A21 Neurospora crassa DNA linkage group V BAC contig B14A21
          Length = 113206

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                             
Query: 142   cggggtgctccttggcgttgacggtggccttg 173
             ||||||| ||| ||||| ||||||||||||||
Sbjct: 58511 cggggtgttccatggcggtgacggtggccttg 58480
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>emb|BX248337.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 4/14
          Length = 327650

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 304    ccagcgcctcgtccaccgtc 323
              ||||||||||||||||||||
Sbjct: 141863 ccagcgcctcgtccaccgtc 141844
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>gb|AC120797.9| Mus musculus chromosome 18, clone RP24-81D18, complete sequence
          Length = 210631

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 218   ctccttcctcttgtacagga 237
             ||||||||||||||||||||
Sbjct: 80846 ctccttcctcttgtacagga 80865
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>gb|AC022276.35| Homo sapiens 12 BAC RP11-161A14 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 177505

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 213   cctccctccttcctcttgta 232
             ||||||||||||||||||||
Sbjct: 49427 cctccctccttcctcttgta 49446
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>ref|NM_143700.3| Drosophila melanogaster CG17724-RA, transcript variant A (CG17724),
            mRNA
          Length = 3873

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 397  cctcgaccaggtcgtcctcctcgagctc 424
            ||||||||||||||||||| | ||||||
Sbjct: 2025 cctcgaccaggtcgtcctcgttgagctc 1998
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>gb|AY070882.1| Drosophila melanogaster LD16673 full length cDNA
          Length = 3009

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 397  cctcgaccaggtcgtcctcctcgagctc 424
            ||||||||||||||||||| | ||||||
Sbjct: 1145 cctcgaccaggtcgtcctcgttgagctc 1118
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>gb|AC099026.1| Drosophila melanogaster, chromosome 2R, region 49F-50A, BAC clone
              BACR05M17, complete sequence
          Length = 182039

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 397    cctcgaccaggtcgtcctcctcgagctc 424
              ||||||||||||||||||| | ||||||
Sbjct: 175871 cctcgaccaggtcgtcctcgttgagctc 175844
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>gb|AY060442.1| Drosophila melanogaster LD47433 full length cDNA
          Length = 3433

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 397  cctcgaccaggtcgtcctcctcgagctc 424
            ||||||||||||||||||| | ||||||
Sbjct: 2025 cctcgaccaggtcgtcctcgttgagctc 1998
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>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome
          Length = 4352825

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 383     ctcggcgccgatgacctcgaccag 406
               ||||||||||||| ||||||||||
Sbjct: 3429444 ctcggcgccgatgccctcgaccag 3429467
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>gb|AE016817.2| Ashbya gossypii (= Eremothecium gossypii) ATCC 10895 chromosome IV,
               complete sequence
          Length = 1466886

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 396     acctcgaccaggtcgtcctc 415
               ||||||||||||||||||||
Sbjct: 1320223 acctcgaccaggtcgtcctc 1320204
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>gb|AY129331.1| Mycobacteriophage CJW1, complete genome
          Length = 75931

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 152   cttggcgttgacggtggccttgtc 175
             ||||||| ||||||||||||||||
Sbjct: 42649 cttggcgatgacggtggccttgtc 42626
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>gb|AC006247.12|AC006247 Drosophila melanogaster, chromosome 2R, region 49E6-49F8, BAC clone
             BACR48I10, complete sequence
          Length = 163162

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 397   cctcgaccaggtcgtcctcctcgagctc 424
             ||||||||||||||||||| | ||||||
Sbjct: 24125 cctcgaccaggtcgtcctcgttgagctc 24098
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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 389     gccgatgacctcgaccaggtcgtc 412
               ||||||| ||||||||||||||||
Sbjct: 1337796 gccgatggcctcgaccaggtcgtc 1337773
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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 378     tcgtcctcggcgccgatgacctcg 401
               |||||||||||||||| |||||||
Sbjct: 5271559 tcgtcctcggcgccgaggacctcg 5271582
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>dbj|AK110015.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-159-H03, full
            insert sequence
          Length = 3575

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 297  agctgctccagcgcctcgtc 316
            ||||||||||||||||||||
Sbjct: 1263 agctgctccagcgcctcgtc 1282
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>ref|NM_209798.1| Eremothecium gossypii ADR349Wp (ADR349W), mRNA
          Length = 963

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 396 acctcgaccaggtcgtcctc 415
           ||||||||||||||||||||
Sbjct: 749 acctcgaccaggtcgtcctc 730
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>gb|AY105772.1| Zea mays PCO147980 mRNA sequence
          Length = 2226

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 369 acggtctcctcgtcctcggcgccg 392
           |||||||||||| |||||||||||
Sbjct: 426 acggtctcctcgccctcggcgccg 403
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>gb|AE003819.3| Drosophila melanogaster chromosome 2R, section 31 of 73 of the complete
             sequence
          Length = 221945

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 397   cctcgaccaggtcgtcctcctcgagctc 424
             ||||||||||||||||||| | ||||||
Sbjct: 98322 cctcgaccaggtcgtcctcgttgagctc 98349
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>gb|AC005471.1|AC005471 Drosophila melanogaster, chromosome 2R, region 49F11-49F13, P1 clone
             DS01087, complete sequence
          Length = 50714

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 397   cctcgaccaggtcgtcctcctcgagctc 424
             ||||||||||||||||||| | ||||||
Sbjct: 37324 cctcgaccaggtcgtcctcgttgagctc 37351
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>gb|U26427.1|ABU26427 Azospirillum brasilense ATP-binding protein, nifU, nifS, and nifV
            genes, complete cds; and unknown gene
          Length = 5115

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 304  ccagcgcctcgtccaccgtc 323
            ||||||||||||||||||||
Sbjct: 1048 ccagcgcctcgtccaccgtc 1029
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>gb|AF018954.1|AF018954 Rhodospirillum rubrum chlorin reductase subunit (bchX) gene, partial
            cds; and chlorin reductase subunits (bchY) and (bchZ)
            genes, complete cds
          Length = 3700

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 383  ctcggcgccgatgacctcgaccag 406
            ||||||||||||| ||||||||||
Sbjct: 2637 ctcggcgccgatgccctcgaccag 2614
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>gb|U62660.1|TGU62660 Toxoplasma gondii micronemal protein MIC2, complete cds
          Length = 7396

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 255  tgctcgttcctgaaggcgtagaag 278
            ||||||||||||||||||| ||||
Sbjct: 3500 tgctcgttcctgaaggcgttgaag 3523
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>gb|L34354.1|AZSNIFU Azospirillum brasilense nitrogen fixation protein (nifU) gene,
           complete cds
          Length = 924

 Score = 40.1 bits (20), Expect = 7.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 304 ccagcgcctcgtccaccgtc 323
           ||||||||||||||||||||
Sbjct: 259 ccagcgcctcgtccaccgtc 240


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,668,371
Number of Sequences: 3902068
Number of extensions: 3668371
Number of successful extensions: 97221
Number of sequences better than 10.0: 56
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 96443
Number of HSP's gapped (non-prelim): 778
length of query: 551
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 528
effective length of database: 17,143,297,704
effective search space: 9051661187712
effective search space used: 9051661187712
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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