ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27k23 |
|---|---|
| Clone Library Name | barley_pub |
>RPOC2_WHEAT (Q9XPS9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1479 Score = 409 bits (1050), Expect = e-114 Identities = 211/213 (99%), Positives = 211/213 (99%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER Sbjct: 1208 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 1267 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ Sbjct: 1268 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 1327 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 VTSKVRVSEDGMSNVF PGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE Sbjct: 1328 VTSKVRVSEDGMSNVFSPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 1387 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1388 ASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1420 Score = 53.1 bits (126), Expect = 8e-07 Identities = 25/31 (80%), Positives = 26/31 (83%) Frame = -2 Query: 93 KA*KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K K+ LGGIIPVGTGFQKFVHRSPQDKN Sbjct: 1410 KGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 1440
>RPOC2_SACOF (Q6ENX1) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1534 Score = 405 bits (1041), Expect = e-113 Identities = 209/213 (98%), Positives = 211/213 (99%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LAT GATV+GHYG+ILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER Sbjct: 1252 LATIGATVHGHYGKILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 1311 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ Sbjct: 1312 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 1371 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE Sbjct: 1372 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 1431 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1432 ASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1464 Score = 53.1 bits (126), Expect = 8e-07 Identities = 25/31 (80%), Positives = 26/31 (83%) Frame = -2 Query: 93 KA*KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K K+ LGGIIPVGTGFQKFVHRSPQDKN Sbjct: 1454 KGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 1484
>RPOC2_SACHY (Q6L3A5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1534 Score = 405 bits (1041), Expect = e-113 Identities = 209/213 (98%), Positives = 211/213 (99%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LAT GATV+GHYG+ILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER Sbjct: 1252 LATIGATVHGHYGKILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 1311 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ Sbjct: 1312 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 1371 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE Sbjct: 1372 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 1431 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1432 ASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1464 Score = 53.1 bits (126), Expect = 8e-07 Identities = 25/31 (80%), Positives = 26/31 (83%) Frame = -2 Query: 93 KA*KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K K+ LGGIIPVGTGFQKFVHRSPQDKN Sbjct: 1454 KGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 1484
>RPOC2_MAIZE (P16025) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1527 Score = 405 bits (1041), Expect = e-113 Identities = 209/213 (98%), Positives = 211/213 (99%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LAT GATV+GHYG+ILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER Sbjct: 1245 LATIGATVHGHYGKILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 1304 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ Sbjct: 1305 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 1364 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE Sbjct: 1365 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 1424 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1425 ASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1457 Score = 53.1 bits (126), Expect = 8e-07 Identities = 25/31 (80%), Positives = 26/31 (83%) Frame = -2 Query: 93 KA*KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K K+ LGGIIPVGTGFQKFVHRSPQDKN Sbjct: 1447 KGLKENVVLGGIIPVGTGFQKFVHRSPQDKN 1477
>RPOC2_ORYSA (P12093) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1513 Score = 401 bits (1031), Expect = e-112 Identities = 207/213 (97%), Positives = 209/213 (98%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LATTGATV+GHYGEILYKGDRLVTFIYEK+RSSDITQGLPKVEQIFEARSIDSLSPNLER Sbjct: 1233 LATTGATVHGHYGEILYKGDRLVTFIYEKARSSDITQGLPKVEQIFEARSIDSLSPNLER 1292 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 RIEDWNERIPRILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ Sbjct: 1293 RIEDWNERIPRILGGPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 1352 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 VTSKVRVSEDGMSNVF PGELIGLLRAERAGRALDESIYYRAILLGITR SLNTQSFISE Sbjct: 1353 VTSKVRVSEDGMSNVFSPGELIGLLRAERAGRALDESIYYRAILLGITRVSLNTQSFISE 1412 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1413 ASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1445 Score = 48.9 bits (115), Expect = 2e-05 Identities = 23/31 (74%), Positives = 25/31 (80%) Frame = -2 Query: 93 KA*KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K K+ LGGIIPVGTGFQKFVHR PQ+KN Sbjct: 1435 KGLKENVVLGGIIPVGTGFQKFVHRYPQNKN 1465
>RPOC2_ORYNI (Q6ENI2) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1513 Score = 401 bits (1031), Expect = e-112 Identities = 207/213 (97%), Positives = 209/213 (98%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LATTGATV+GHYGEILYKGDRLVTFIYEK+RSSDITQGLPKVEQIFEARSIDSLSPNLER Sbjct: 1233 LATTGATVHGHYGEILYKGDRLVTFIYEKARSSDITQGLPKVEQIFEARSIDSLSPNLER 1292 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 RIEDWNERIPRILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ Sbjct: 1293 RIEDWNERIPRILGGPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 1352 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 VTSKVRVSEDGMSNVF PGELIGLLRAERAGRALDESIYYRAILLGITR SLNTQSFISE Sbjct: 1353 VTSKVRVSEDGMSNVFSPGELIGLLRAERAGRALDESIYYRAILLGITRVSLNTQSFISE 1412 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1413 ASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1445 Score = 50.8 bits (120), Expect = 4e-06 Identities = 24/31 (77%), Positives = 25/31 (80%) Frame = -2 Query: 93 KA*KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K K+ LGGIIPVGTGFQKFVHR PQDKN Sbjct: 1435 KGLKENVVLGGIIPVGTGFQKFVHRYPQDKN 1465
>RPOC2_CUCSA (Q4VZP3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1394 Score = 362 bits (930), Expect(2) = e-104 Identities = 183/213 (85%), Positives = 199/213 (93%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LAT+GATV+ HYGEILY+GD LVTFIYEKSRS DITQGLPKVEQ+ E RSIDS+S +LE+ Sbjct: 1114 LATSGATVHRHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMSLEK 1173 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 RIE WNERI RILG+PWGFLIGAELTI QSRISLVNKIQKVYRSQGV+IHNRHIEII+RQ Sbjct: 1174 RIEGWNERITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVEIHNRHIEIIVRQ 1233 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 +TSKV VSEDGMSNVF PGELIGLLRAER GRAL+E+I YRA+LLGIT+ASLNTQSFISE Sbjct: 1234 ITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAVLLGITKASLNTQSFISE 1293 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQETARVLAKAALRGRIDWL+GLKENVV GG Sbjct: 1294 ASFQETARVLAKAALRGRIDWLRGLKENVVLGG 1326 Score = 36.6 bits (83), Expect(2) = e-104 Identities = 16/28 (57%), Positives = 20/28 (71%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K+ LGG+IPVGTGF++ HRS Q N Sbjct: 1319 KENVVLGGMIPVGTGFRELAHRSRQHNN 1346
>RPOC2_EUCGG (Q49L08) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 369 bits (946), Expect = e-102 Identities = 188/213 (88%), Positives = 198/213 (92%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LAT GATV+GHYGEILY+GD LVTFIYEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+ Sbjct: 1112 LATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEK 1171 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 RIE WNE I +ILG+PWGFLIGAELTI QSRISLVNKIQKVYRSQGVQIHNRHIEII+RQ Sbjct: 1172 RIEGWNEHIKKILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 1231 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 +TSKV VSEDGMSNVFLPGELIGLLRA R GRAL+ESI YRAILLGITRASLNTQSFISE Sbjct: 1232 ITSKVLVSEDGMSNVFLPGELIGLLRAARTGRALEESICYRAILLGITRASLNTQSFISE 1291 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1292 ASFQETARVLAKAALRGRIDWLKGLKENVVIGG 1324 Score = 38.5 bits (88), Expect = 0.021 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -2 Query: 93 KA*KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K K+ +GG+IPVGTGF+ VHRS Q KN Sbjct: 1314 KGLKENVVIGGMIPVGTGFKGLVHRSRQHKN 1344
>RPOC2_CALFE (Q7YJY0) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1377 Score = 367 bits (943), Expect = e-101 Identities = 187/213 (87%), Positives = 200/213 (93%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LAT GATV+GH GEILY+GD LVTFIYEKSRS DITQGLPKVEQ+ EARSIDS+S NLE+ Sbjct: 1106 LATPGATVHGHCGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEARSIDSISMNLEK 1165 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 R+E WNERI +ILG+PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEII+RQ Sbjct: 1166 RVEGWNERITKILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 1225 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 +TS+V VSEDGMSNVF PGELIGLLRAER GRAL+E+I YRAILLGITRASLNTQSFISE Sbjct: 1226 ITSRVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISE 1285 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1286 ASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1318 Score = 33.1 bits (74), Expect = 0.87 Identities = 16/31 (51%), Positives = 20/31 (64%) Frame = -2 Query: 93 KA*KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K K+ LGG++PVGTGF+ V RS Q N Sbjct: 1308 KGLKENVVLGGMMPVGTGFKGLVRRSRQHNN 1338
>RPOC2_SPIOL (P11704) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1361 Score = 366 bits (939), Expect = e-101 Identities = 186/213 (87%), Positives = 198/213 (92%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LAT GAT++GHYGEI+Y+GD LVTFIYEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+ Sbjct: 1096 LATPGATLHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISINLEK 1155 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 RI+ WNERI RILG PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEII+RQ Sbjct: 1156 RIDSWNERITRILGSPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 1215 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 +TSKV VSEDGMSNVFLPGELIGL RAER GRAL+E+I YRA LLGITRASLNTQSFISE Sbjct: 1216 ITSKVLVSEDGMSNVFLPGELIGLFRAERTGRALEEAICYRATLLGITRASLNTQSFISE 1275 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1276 ASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1308 Score = 38.1 bits (87), Expect = 0.027 Identities = 18/31 (58%), Positives = 22/31 (70%) Frame = -2 Query: 93 KA*KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K K+ LGG+IPVGTGF+ FVH S Q K+ Sbjct: 1298 KGLKENVVLGGMIPVGTGFKGFVHHSSQHKD 1328
>RPOC2_ACOCL (Q3V544) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 363 bits (933), Expect = e-100 Identities = 183/212 (86%), Positives = 197/212 (92%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LAT GATV+GHYGEILY GD L+TFIYEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+ Sbjct: 1105 LATPGATVHGHYGEILYGGDTLITFIYEKSRSGDITQGLPKVEQVLEVRSIDSISTNLEK 1164 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 R+E WNE I +ILG+PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHN+HIEII+RQ Sbjct: 1165 RVEGWNEHITKILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNKHIEIIVRQ 1224 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 +TSKV VSEDGMSNVF PGELIGLLRAER GRAL+E+I YRAILLGITRASLNTQSFISE Sbjct: 1225 ITSKVLVSEDGMSNVFSPGELIGLLRAERTGRALEEAICYRAILLGITRASLNTQSFISE 1284 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 ASFQETARVLAKAALRGR+DWLKGLKENVV G Sbjct: 1285 ASFQETARVLAKAALRGRVDWLKGLKENVVLG 1316 Score = 33.9 bits (76), Expect = 0.51 Identities = 16/31 (51%), Positives = 20/31 (64%) Frame = -2 Query: 93 KA*KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K K+ LG +IPVGTGF+ VHRS + N Sbjct: 1307 KGLKENVVLGAMIPVGTGFKALVHRSRKPNN 1337
>RPOC2_SILLA (Q589B8) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1373 Score = 363 bits (931), Expect = e-100 Identities = 181/213 (84%), Positives = 198/213 (92%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LAT GATV+GHYGEI+Y+GD LVTFIYEKSRS DITQGLPKVEQ+ E RS++S+S NLE+ Sbjct: 1098 LATPGATVHGHYGEIIYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSVESISMNLEK 1157 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 RI WNERI +ILG+PWGFL+GAELTIAQSRISLVNKIQKVYRSQGVQIH+RHIEII+RQ Sbjct: 1158 RINGWNERIKKILGIPWGFLVGAELTIAQSRISLVNKIQKVYRSQGVQIHDRHIEIIVRQ 1217 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 +TSKV VSEDGMSN+FLPGELIGL RAER GRAL+E+I YR ILLGITRASLNTQSFISE Sbjct: 1218 ITSKVLVSEDGMSNIFLPGELIGLFRAERTGRALEEAICYRTILLGITRASLNTQSFISE 1277 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1278 ASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1310 Score = 39.7 bits (91), Expect = 0.009 Identities = 19/31 (61%), Positives = 23/31 (74%) Frame = -2 Query: 93 KA*KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K K+ LGG+IPVGTGF+ FVHRS Q K+ Sbjct: 1300 KGLKENVVLGGMIPVGTGFKGFVHRSNQHKS 1330
>RPOC2_PHAAO (Q3BAQ2) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1388 Score = 362 bits (929), Expect = e-100 Identities = 184/213 (86%), Positives = 196/213 (92%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 L T GATV+GHYGE Y+GD L+TFIYEKSRS DITQGLPKVEQI E RSIDS+S NLER Sbjct: 1110 LVTPGATVHGHYGETFYEGDTLITFIYEKSRSGDITQGLPKVEQILEVRSIDSISMNLER 1169 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 R+E W+ERI RILG+PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRH+EII+RQ Sbjct: 1170 RVEGWDERIRRILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHLEIIVRQ 1229 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 VTS+V VSEDGMSNVFLPGE IGLLRAERAGR L ESI YRAILLGIT++SLNTQSFISE Sbjct: 1230 VTSRVLVSEDGMSNVFLPGEFIGLLRAERAGRVLAESICYRAILLGITKSSLNTQSFISE 1289 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1290 ASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1322 Score = 45.8 bits (107), Expect = 1e-04 Identities = 22/31 (70%), Positives = 23/31 (74%) Frame = -2 Query: 93 KA*KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K K+ LGGIIPVGTGF K VHRS QDKN Sbjct: 1312 KGLKENVVLGGIIPVGTGFNKLVHRSKQDKN 1342
>RPOC2_NICTO (Q33C48) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 362 bits (928), Expect = e-100 Identities = 184/213 (86%), Positives = 197/213 (92%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LAT GATV+GHYGE LY+GD LVTFIYEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+ Sbjct: 1112 LATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEK 1171 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 RIE WN+ I RILG+PWGFLIGAELTIAQSRISLVNKIQ+VYRSQGVQIHNRHIEII+RQ Sbjct: 1172 RIEGWNKCITRILGIPWGFLIGAELTIAQSRISLVNKIQQVYRSQGVQIHNRHIEIIVRQ 1231 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 +TSKV VSEDGMSNVF PGELIGLLRAER GRAL+E+I YR +LLGITRASLNTQSFISE Sbjct: 1232 ITSKVLVSEDGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGITRASLNTQSFISE 1291 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1292 ASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1324 Score = 35.8 bits (81), Expect = 0.13 Identities = 17/31 (54%), Positives = 20/31 (64%) Frame = -2 Query: 93 KA*KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K K+ LGG+IPVGTGF+ VH S Q N Sbjct: 1314 KGLKENVVLGGVIPVGTGFKGLVHPSKQHNN 1344
>RPOC2_PANGI (Q68S16) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1387 Score = 362 bits (928), Expect = e-100 Identities = 183/213 (85%), Positives = 197/213 (92%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LAT GATV+GHYGEILY+GD LVTFIYEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+ Sbjct: 1107 LATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEK 1166 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 R+E WNE I R LG+PWGFLIGAELTI QSRISLVNKIQKVYRSQGVQIHNRHIEII+RQ Sbjct: 1167 RVEGWNECITRNLGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 1226 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 +TSKV VSEDGMSNVFLPGE IGLLRAER GRAL+E+I Y+A+LLGIT+ASLNTQSFISE Sbjct: 1227 ITSKVLVSEDGMSNVFLPGEFIGLLRAERMGRALEEAICYQAVLLGITKASLNTQSFISE 1286 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1287 ASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1319 Score = 32.7 bits (73), Expect = 1.1 Identities = 17/31 (54%), Positives = 20/31 (64%) Frame = -2 Query: 93 KA*KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K K+ LGG+IPVGTGF+ V S Q KN Sbjct: 1309 KGLKENVVLGGMIPVGTGFKGLVPPSRQHKN 1339
>RPOC2_ATRBE (Q8S8Y1) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1389 Score = 361 bits (927), Expect = 1e-99 Identities = 183/213 (85%), Positives = 197/213 (92%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LAT GATV+GHYGE LY+GD LVTFIYEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+ Sbjct: 1109 LATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEK 1168 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 R+E WN+ I RILG+PWGFLIGAELTIAQSRISLVNKIQ+VYRSQGVQIHNRHIEII+RQ Sbjct: 1169 RVEGWNKCITRILGIPWGFLIGAELTIAQSRISLVNKIQQVYRSQGVQIHNRHIEIIVRQ 1228 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 +TSKV VSEDGMSNVF PGELIGLLRAER GRAL+E+I YR +LLGITRASLNTQSFISE Sbjct: 1229 ITSKVLVSEDGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGITRASLNTQSFISE 1288 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1289 ASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1321 Score = 35.8 bits (81), Expect = 0.13 Identities = 17/31 (54%), Positives = 20/31 (64%) Frame = -2 Query: 93 KA*KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K K+ LGG+IPVGTGF+ VH S Q N Sbjct: 1311 KGLKENVVLGGVIPVGTGFKGLVHPSKQHNN 1341
>RPOC2_NICSY (Q3C1G9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 360 bits (925), Expect = 2e-99 Identities = 182/213 (85%), Positives = 197/213 (92%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LAT GATV+GHYGE LY+GD LVTFIYEKSRS DITQGLPKVEQ+ E RS+DS+S NLE+ Sbjct: 1112 LATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSVDSISMNLEK 1171 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 RIE WN+ I RILG+PWGFLIGAELTIAQSRISLVNKIQ+VYRSQGVQIHNRH+EII+RQ Sbjct: 1172 RIEGWNKCITRILGIPWGFLIGAELTIAQSRISLVNKIQQVYRSQGVQIHNRHLEIIVRQ 1231 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 +TSKV VSEDGMSNVF PGELIGLLRAER GRAL+E+I YR +LLGITRASLNTQSFISE Sbjct: 1232 ITSKVLVSEDGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGITRASLNTQSFISE 1291 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1292 ASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1324 Score = 35.8 bits (81), Expect = 0.13 Identities = 17/31 (54%), Positives = 20/31 (64%) Frame = -2 Query: 93 KA*KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K K+ LGG+IPVGTGF+ VH S Q N Sbjct: 1314 KGLKENVVLGGVIPVGTGFKGLVHPSKQHNN 1344
>RPOC2_OENHO (Q9MTM3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 360 bits (925), Expect = 2e-99 Identities = 182/213 (85%), Positives = 195/213 (91%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LAT GATV+GHYGEILY GD +VTF+YEKSRS DITQGLPKVEQ+ E RS+DS+S NLE+ Sbjct: 1107 LATPGATVHGHYGEILYDGDTVVTFLYEKSRSGDITQGLPKVEQVLEVRSVDSISVNLEK 1166 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 R+E+WNE I RILG PWGFLIGAELTI QSRISLVNKIQKVYRSQGVQIHNRHIEII+RQ Sbjct: 1167 RVENWNEHITRILGFPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 1226 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 +TSKV VSEDGMSNVFLP ELIGLLRAER GRAL+ESI Y+A LLGITR SLNTQSFISE Sbjct: 1227 ITSKVLVSEDGMSNVFLPRELIGLLRAERTGRALEESICYKAFLLGITRTSLNTQSFISE 1286 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1287 ASFQETARVLAKAALRGRIDWLKGLKENVVIGG 1319 Score = 33.9 bits (76), Expect = 0.51 Identities = 16/31 (51%), Positives = 21/31 (67%) Frame = -2 Query: 93 KA*KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K K+ +GG+IPVGTGF+ VH S Q K+ Sbjct: 1309 KGLKENVVIGGMIPVGTGFKGLVHCSKQHKS 1339
>RPOC2_TOBAC (P38550) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1388 Score = 360 bits (925), Expect = 2e-99 Identities = 182/213 (85%), Positives = 197/213 (92%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LAT GATV+GHYGE LY+GD LVTFIYEKSRS DITQGLPKVEQ+ E RS+DS+S NLE+ Sbjct: 1108 LATPGATVHGHYGETLYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSVDSISMNLEK 1167 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 RIE WN+ I RILG+PWGFLIGAELTIAQSRISLVNKIQ+VYRSQGVQIHNRH+EII+RQ Sbjct: 1168 RIEGWNKCITRILGIPWGFLIGAELTIAQSRISLVNKIQQVYRSQGVQIHNRHLEIIVRQ 1227 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 +TSKV VSEDGMSNVF PGELIGLLRAER GRAL+E+I YR +LLGITRASLNTQSFISE Sbjct: 1228 ITSKVLVSEDGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGITRASLNTQSFISE 1287 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1288 ASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1320 Score = 35.8 bits (81), Expect = 0.13 Identities = 17/31 (54%), Positives = 20/31 (64%) Frame = -2 Query: 93 KA*KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K K+ LGG+IPVGTGF+ VH S Q N Sbjct: 1310 KGLKENVVLGGVIPVGTGFKGLVHPSKQHNN 1340
>RPOC2_NYMAL (Q6EW58) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1401 Score = 360 bits (923), Expect = 3e-99 Identities = 182/213 (85%), Positives = 196/213 (92%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LAT GATV+G YGEI Y+GD LVTFIYEKSRS DIT GLPKVEQ+ E RSIDS+S NLE+ Sbjct: 1108 LATRGATVHGDYGEIFYEGDTLVTFIYEKSRSGDITHGLPKVEQVLEVRSIDSISMNLEK 1167 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 R+E WNE I ILG+PWGFLIGAELTIAQSR+SLVNKIQKVYRSQGVQIHN+HIEII+RQ Sbjct: 1168 RVEGWNEHITGILGIPWGFLIGAELTIAQSRVSLVNKIQKVYRSQGVQIHNKHIEIIVRQ 1227 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 +TSKV VSEDGMSNVF PGELIGLLRAERAGRAL+E+I YRA+LLGITRASLNTQSFISE Sbjct: 1228 ITSKVLVSEDGMSNVFSPGELIGLLRAERAGRALEEAICYRAVLLGITRASLNTQSFISE 1287 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1288 ASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1320 Score = 39.3 bits (90), Expect = 0.012 Identities = 18/31 (58%), Positives = 23/31 (74%) Frame = -2 Query: 93 KA*KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K K+ LGG+IPVGTGF++FVHRS + N Sbjct: 1310 KGLKENVVLGGMIPVGTGFKRFVHRSREYNN 1340
>RPOC2_ARATH (P56764) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1376 Score = 360 bits (923), Expect = 3e-99 Identities = 183/213 (85%), Positives = 197/213 (92%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LAT GA V+GHY EILY+GD LVTFIYEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+ Sbjct: 1103 LATPGAKVHGHYSEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISLNLEK 1162 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 RI+ WN+ I RILG+PWGFLIGAELTI QSRISLVNKIQKVYRSQGVQIHNRHIEII+RQ Sbjct: 1163 RIKGWNKCITRILGIPWGFLIGAELTIVQSRISLVNKIQKVYRSQGVQIHNRHIEIIVRQ 1222 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 +TSKV VSE+GMSNVFLPGELIGLLRAER GRAL+E+I YRA+LLGITRASLNTQSFISE Sbjct: 1223 ITSKVLVSEEGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISE 1282 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1283 ASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1315 Score = 30.8 bits (68), Expect = 4.3 Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 1/32 (3%) Frame = -2 Query: 93 KA*KKT*XLGGIIPVGTGFQK-FVHRSPQDKN 1 K K+ LGG+IP GTGF K VH S Q N Sbjct: 1305 KGLKENVVLGGVIPAGTGFNKGLVHCSRQHTN 1336
>RPOC2_SOYBN (Q8HVY3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 358 bits (918), Expect = 1e-98 Identities = 181/216 (83%), Positives = 198/216 (91%) Frame = -1 Query: 709 NLILATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPN 530 N LAT GATV+GHYGEIL +GD LVTFIYEKSRS DITQGLPKVEQ+ E RSIDS+S N Sbjct: 1107 NPYLATPGATVHGHYGEILSEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMN 1166 Query: 529 LERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEII 350 LE+R++ WN RI +ILG+PWGFLIGAELTIAQSRISLVNKIQKVYRSQGV IHNRHIEII Sbjct: 1167 LEKRVDTWNGRITKILGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEII 1226 Query: 349 IRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSF 170 +RQ+TSKV VSEDGMSNVFLPGELIGLLRAERAGR+L+E+I YR +LLGIT+ SLNTQSF Sbjct: 1227 VRQITSKVLVSEDGMSNVFLPGELIGLLRAERAGRSLEEAICYRVLLLGITKTSLNTQSF 1286 Query: 169 ISEASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ISEASFQETARVL+KAALRGRIDWLKGLKENVV GG Sbjct: 1287 ISEASFQETARVLSKAALRGRIDWLKGLKENVVLGG 1322 Score = 33.5 bits (75), Expect = 0.67 Identities = 15/28 (53%), Positives = 21/28 (75%) Frame = -2 Query: 93 KA*KKT*XLGGIIPVGTGFQKFVHRSPQ 10 K K+ LGG+IPVGTGF++ ++RS Q Sbjct: 1312 KGLKENVVLGGMIPVGTGFKRIMNRSKQ 1339
>RPOC2_PEA (P12227) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) (Fragment) Length = 1163 Score = 358 bits (918), Expect = 1e-98 Identities = 181/216 (83%), Positives = 198/216 (91%) Frame = -1 Query: 709 NLILATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPN 530 N LAT GAT++GHYGEIL +GD LVTFIYEKSRS DITQGLPKVEQI E RSIDS+S N Sbjct: 894 NPYLATPGATIHGHYGEILSQGDILVTFIYEKSRSGDITQGLPKVEQILEIRSIDSISMN 953 Query: 529 LERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEII 350 LE+RI+ WNE I +I+G+PWGFLIGAELTIAQSRISLVNKIQKVYRSQGV IHNRHIEII Sbjct: 954 LEKRIDAWNECITKIIGIPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVHIHNRHIEII 1013 Query: 349 IRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSF 170 +RQ+TSKV VSEDGMSN+FLPGELIGLLRAER GRAL+E+I YRA+LLG+T+ SLNTQSF Sbjct: 1014 VRQITSKVLVSEDGMSNIFLPGELIGLLRAERTGRALEEAICYRALLLGVTKTSLNTQSF 1073 Query: 169 ISEASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ISEASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1074 ISEASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1109 Score = 34.7 bits (78), Expect = 0.30 Identities = 15/26 (57%), Positives = 20/26 (76%) Frame = -2 Query: 93 KA*KKT*XLGGIIPVGTGFQKFVHRS 16 K K+ LGG+IPVGTGF++ +HRS Sbjct: 1099 KGLKENVVLGGMIPVGTGFKRIMHRS 1124
>RPOC2_SOLTU (Q2VEI6) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 356 bits (913), Expect = 5e-98 Identities = 180/213 (84%), Positives = 196/213 (92%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LAT GATV+GHYGE L +G+ LVTFIYEKS S DITQGLPKVEQ+ E RSIDS+S NLE+ Sbjct: 1112 LATPGATVHGHYGETLNQGNTLVTFIYEKSISDDITQGLPKVEQVLEVRSIDSISMNLEK 1171 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 R+E WN+ IPRILG+PWGFLIGAELTIAQSRISLVNKIQ+VYRSQGVQIHNRHIEII+RQ Sbjct: 1172 RVESWNKCIPRILGIPWGFLIGAELTIAQSRISLVNKIQQVYRSQGVQIHNRHIEIIVRQ 1231 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 +TSKV +SEDGMSNVF PGELIGLLRAER GRAL+E+I YR +LLGITRASLNTQSFISE Sbjct: 1232 ITSKVLISEDGMSNVFSPGELIGLLRAERMGRALEEAICYRVVLLGITRASLNTQSFISE 1291 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1292 ASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1324 Score = 35.8 bits (81), Expect = 0.13 Identities = 17/31 (54%), Positives = 20/31 (64%) Frame = -2 Query: 93 KA*KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K K+ LGG+IPVGTGF+ VH S Q N Sbjct: 1314 KGLKENVVLGGVIPVGTGFKGLVHPSKQHNN 1344
>RPOC2_SINAL (Q9THV5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1384 Score = 355 bits (912), Expect = 6e-98 Identities = 181/213 (84%), Positives = 196/213 (92%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LAT GA V+GHY EILY+GD LVTFIYEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+ Sbjct: 1111 LATPGAKVHGHYREILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISLNLEK 1170 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 RI+ WN I RILG+PWGFLIGAELTI QSRISLVNKI++VYRSQGVQIHNRHIEII+RQ Sbjct: 1171 RIKGWNRCITRILGIPWGFLIGAELTIVQSRISLVNKIKQVYRSQGVQIHNRHIEIIVRQ 1230 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 +TSKV VSE+GMSNVFLPGELIGLLRAER GRAL+E+I YRA+LLGITRASLNTQSFISE Sbjct: 1231 ITSKVLVSEEGMSNVFLPGELIGLLRAERTGRALEEAICYRAVLLGITRASLNTQSFISE 1290 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQETARVLAKAALRGRIDWLKGLKENVV GG Sbjct: 1291 ASFQETARVLAKAALRGRIDWLKGLKENVVLGG 1323
>RPOC2_LACSA (Q56P11) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1381 Score = 355 bits (911), Expect = 8e-98 Identities = 180/213 (84%), Positives = 195/213 (91%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LAT GATV+GHYGEILY+GD LVTFIYEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+ Sbjct: 1105 LATPGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEK 1164 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 RIE WN+ I RILG+PW FLIGAELTI QSRISLVNK+QKVYRSQGVQIHNRHIEII+RQ Sbjct: 1165 RIEGWNKSITRILGIPWAFLIGAELTIVQSRISLVNKVQKVYRSQGVQIHNRHIEIIVRQ 1224 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 +TSKV VSED MSNVF PGELIGLLRAER GRAL+E+I Y+A+LLGITRAS+NTQSFISE Sbjct: 1225 ITSKVLVSEDEMSNVFSPGELIGLLRAERMGRALEEAICYQAVLLGITRASMNTQSFISE 1284 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQETARVLAKAAL GRIDWLKGLKENVV GG Sbjct: 1285 ASFQETARVLAKAALLGRIDWLKGLKENVVLGG 1317
>RPOC2_LOTJA (Q9BBS7) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1332 Score = 354 bits (908), Expect = 2e-97 Identities = 179/216 (82%), Positives = 196/216 (90%) Frame = -1 Query: 709 NLILATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPN 530 N LAT GAT++GHYGE+LY+GD LVTFIYEKSRS DITQGLPKVEQ+ E RSIDS+S N Sbjct: 1082 NPYLATPGATIHGHYGEMLYEGDILVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMN 1141 Query: 529 LERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEII 350 LE+RI+ WNERI ILG+PW FLIGAELTIAQSRISLVNKIQ+VYRSQGV IHNRHIEII Sbjct: 1142 LEKRIDAWNERITGILGIPWRFLIGAELTIAQSRISLVNKIQRVYRSQGVHIHNRHIEII 1201 Query: 349 IRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSF 170 +RQ+TSKV VSEDGMSNVF PGELIGLLRA+R GRAL+ESI YR +LLGIT+ SLNTQSF Sbjct: 1202 VRQITSKVLVSEDGMSNVFSPGELIGLLRAQRTGRALEESICYRTLLLGITKTSLNTQSF 1261 Query: 169 ISEASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ISEASFQETARVLAKAALRGRIDWLKGLKEN+V GG Sbjct: 1262 ISEASFQETARVLAKAALRGRIDWLKGLKENLVLGG 1297 Score = 32.0 bits (71), Expect = 1.9 Identities = 16/26 (61%), Positives = 18/26 (69%) Frame = -2 Query: 93 KA*KKT*XLGGIIPVGTGFQKFVHRS 16 K K+ LGGIIPVGTGF+K RS Sbjct: 1287 KGLKENLVLGGIIPVGTGFKKIGDRS 1312
>RPOC2_AMBTC (P60289) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1373 Score = 347 bits (890), Expect = 2e-95 Identities = 177/213 (83%), Positives = 189/213 (88%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LAT GATV+GHYGEILY+GD LVTFIYEKSRS DITQGLPKVEQ+ E RSIDS+S NLE+ Sbjct: 1101 LATRGATVHGHYGEILYEGDTLVTFIYEKSRSGDITQGLPKVEQVLEVRSIDSISMNLEK 1160 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 R+E WNERI LG+PW F I A+LTI QSRISLVNKIQKVYRSQGVQIHNRHIE I+RQ Sbjct: 1161 RVEGWNERITGFLGIPWEFFISAQLTIVQSRISLVNKIQKVYRSQGVQIHNRHIETIVRQ 1220 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 +TSKV VSEDGMSNVF P ELIGLLRAER GRAL++ I YRAILLGITRASLNTQSFISE Sbjct: 1221 ITSKVLVSEDGMSNVFSPRELIGLLRAERIGRALEDDICYRAILLGITRASLNTQSFISE 1280 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQET RVLAKAALR RIDWLKGLKENVV GG Sbjct: 1281 ASFQETTRVLAKAALRSRIDWLKGLKENVVLGG 1313 Score = 36.6 bits (83), Expect = 0.079 Identities = 17/31 (54%), Positives = 21/31 (67%) Frame = -2 Query: 93 KA*KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K K+ LGG+IPVGTGF+ FVH S + N Sbjct: 1303 KGLKENVVLGGMIPVGTGFKGFVHHSREHNN 1333
>RPOC2_PINKO (Q85X62) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1209 Score = 291 bits (745), Expect = 1e-78 Identities = 149/213 (69%), Positives = 177/213 (83%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LAT ATV+GHYGEIL KGD L+T IYE+ +SSDI QGLPKVEQ+ EAR +S+S NL+ Sbjct: 934 LATRKATVHGHYGEILDKGDTLITLIYERLKSSDIIQGLPKVEQLSEARLNNSISMNLKE 993 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 E+W + R LG WG I A +T+ QS+I LVN+IQKVYRSQGV+I ++HIEII+RQ Sbjct: 994 SFENWTGDMTRFLGSLWGLFISARITMEQSQIHLVNQIQKVYRSQGVRIGDKHIEIIVRQ 1053 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 +TSKV +SEDG +NVF PGELIGL RA+R RAL+E+IYY+ +LLGITRASLNTQSFISE Sbjct: 1054 MTSKVLISEDGTANVFSPGELIGLSRAQRMDRALEETIYYQTMLLGITRASLNTQSFISE 1113 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQETARVLAKAAL+GRIDWLKGLKENV+ GG Sbjct: 1114 ASFQETARVLAKAALQGRIDWLKGLKENVILGG 1146
>RPOC2_PINTH (P41606) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1224 Score = 283 bits (725), Expect = 3e-76 Identities = 145/213 (68%), Positives = 175/213 (82%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LAT ATV+ HYG+IL KGD L+T IYE+ +SSDI QGLPKVEQ+ EAR +S+S NL+ Sbjct: 948 LATRKATVHSHYGKILDKGDTLITLIYERFKSSDIIQGLPKVEQLSEARLNNSISMNLKE 1007 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 E+W + R LG WG I A +T+ QS+I LVN+IQKVYRSQGV+I ++HIE+I+RQ Sbjct: 1008 SFENWTGDMTRFLGSLWGLFISARITMEQSQIHLVNQIQKVYRSQGVRIGDKHIEVIVRQ 1067 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 +TSKV +SEDG +NVF PGELI L RA+R RAL+E+IYY+ +LLGITRASLNTQSFISE Sbjct: 1068 MTSKVLISEDGTANVFSPGELIVLSRAQRMDRALEEAIYYQTMLLGITRASLNTQSFISE 1127 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQETARVLAKAAL+GRIDWLKGLKENV+ GG Sbjct: 1128 ASFQETARVLAKAALQGRIDWLKGLKENVILGG 1160
>RPOC2_ANTFO (Q85C71) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1445 Score = 278 bits (711), Expect = 1e-74 Identities = 139/213 (65%), Positives = 173/213 (81%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LAT GAT++ HYG+I+ KGD L+T +YE+ +S DI QGLPKVEQ+ EAR I+S S NLE Sbjct: 1158 LATGGATIHSHYGQIIKKGDVLITLVYERLKSGDIIQGLPKVEQLLEARPINSTSINLEN 1217 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 E+WN + + LG WGFL+ A+ T+ QS+I+LV++IQ+VY+SQGV I ++HIEI++RQ Sbjct: 1218 GFENWNRDMTKSLGSLWGFLLSAKTTMNQSQINLVDQIQEVYQSQGVYISDKHIEIVVRQ 1277 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 +TSKV EDGM+N FLPGELI RA+R R L+ES+ Y+ ILLGIT+ASLNTQSFISE Sbjct: 1278 MTSKVLTLEDGMANGFLPGELIESSRAQRMNRVLEESVLYKPILLGITKASLNTQSFISE 1337 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQET RVLAKAALRGRIDWLKGLKENV+ GG Sbjct: 1338 ASFQETTRVLAKAALRGRIDWLKGLKENVIFGG 1370
>RPOC2_MARPO (P06274) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 276 bits (707), Expect = 3e-74 Identities = 136/213 (63%), Positives = 173/213 (81%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LAT GAT++ +YGE + +GD L+T IYE+ +S DI QGLPKVEQ+ EAR I+S+S NLE Sbjct: 1101 LATGGATIHNNYGEFIKEGDTLITLIYERLKSGDIIQGLPKVEQLLEARPINSVSINLEN 1160 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 EDWN + + +G WGF + ++++ Q +I+LV++IQKVY+SQGVQI N+HIEII+RQ Sbjct: 1161 GFEDWNNDMIKFIGNLWGFFLSTKISMEQGQINLVDQIQKVYQSQGVQISNKHIEIIVRQ 1220 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 +TSKV EDGM+NVFLPGELI R ++ RAL+E++ Y+ ILLGIT+ASLNTQSFISE Sbjct: 1221 MTSKVITLEDGMTNVFLPGELIEFSRTQKMNRALEEAVPYKPILLGITKASLNTQSFISE 1280 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQET RVLAKAAL+GRIDWLKGLKENV+ GG Sbjct: 1281 ASFQETTRVLAKAALKGRIDWLKGLKENVILGG 1313
>RPOC2_PHYPA (P60290) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1330 Score = 268 bits (686), Expect = 9e-72 Identities = 134/213 (62%), Positives = 170/213 (79%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LAT GA ++ +YGEI+ +GD L+T IYE+ +S DI QGLPKVEQ+ EAR + +S NLE+ Sbjct: 1059 LATGGAIIHNNYGEIVKEGDILITLIYERLKSGDIIQGLPKVEQLLEARLTNPVSINLEK 1118 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 +WN+ + G WG+ + A++++ QS+++LVN+IQKVYRSQGV I ++HIEII+RQ Sbjct: 1119 GFGEWNKDMTNFFGSLWGYFLSAQISMEQSQVNLVNQIQKVYRSQGVNISDKHIEIIVRQ 1178 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 +TSKV EDGM+N FLPGELI RA+R RAL+E I Y+ +LLGIT+ASLNTQSFISE Sbjct: 1179 MTSKVFTLEDGMTNGFLPGELIEFARAKRMNRALEEVIPYKPVLLGITKASLNTQSFISE 1238 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQET RVLAKAALRGRIDWLKGLKENV+ GG Sbjct: 1239 ASFQETTRVLAKAALRGRIDWLKGLKENVILGG 1271
>RPOC2_PSINU (Q8WI26) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1408 Score = 263 bits (672), Expect = 4e-70 Identities = 131/215 (60%), Positives = 168/215 (78%) Frame = -1 Query: 706 LILATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNL 527 L LAT GAT++ HYG++L +GD L+T YE+ +S DI QGLPKVEQ+ EARS++++S N+ Sbjct: 1123 LYLATKGATIHNHYGDLLREGDTLITLTYERFKSGDIIQGLPKVEQLLEARSVNAVSRNI 1182 Query: 526 ERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIII 347 E + N I + + PW F A+++ QSR LV++IQ VY+SQGVQI ++HIEII+ Sbjct: 1183 EDNFKKCNRVIAKFIESPWSFFFSAKISTEQSRKDLVDQIQGVYQSQGVQISDKHIEIIV 1242 Query: 346 RQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFI 167 RQ+TSKV EDG++ VFLPGELI L RA+R RAL + IYY+ ILLGIT+ASLNT SF+ Sbjct: 1243 RQMTSKVLTLEDGIATVFLPGELIELPRAQRMNRALKQLIYYKPILLGITKASLNTTSFL 1302 Query: 166 SEASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 SEASFQET RVLA+AA+RGRIDWLKGLKENV+ GG Sbjct: 1303 SEASFQETTRVLARAAIRGRIDWLKGLKENVIIGG 1337
>RPOC2_CHAGL (Q8MA10) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1373 Score = 254 bits (648), Expect(2) = 1e-69 Identities = 123/213 (57%), Positives = 164/213 (76%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LAT A + G+Y +I+ GD +T +YE+ ++ DI QGLPKVEQ+ EAR +++LS NL+ Sbjct: 1094 LATKNAIIYGNYKQIITSGDNFITIVYERFKTRDIIQGLPKVEQLLEARPLNNLSSNLDF 1153 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 DWN I R+LG PWGF + + + I QS++ LVN+IQKVY+SQGVQI ++H+EII+RQ Sbjct: 1154 GFLDWNTDISRLLGNPWGFFLSSLIIIRQSQLELVNQIQKVYQSQGVQISDKHLEIIVRQ 1213 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 +TS+V +E+ N FLPGEL+ L +A+R + L+ S+ Y+ ILLGITRASLNT SFISE Sbjct: 1214 MTSRVLTTEENGPNAFLPGELVDLFKAQRMNQILENSLAYKPILLGITRASLNTYSFISE 1273 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGG 62 ASFQET +VL KAAL+GRIDWL+GLKENV+ GG Sbjct: 1274 ASFQETTKVLTKAALQGRIDWLQGLKENVILGG 1306 Score = 30.0 bits (66), Expect(2) = 1e-69 Identities = 12/22 (54%), Positives = 17/22 (77%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHR 19 K+ LGGIIP GTG+QK +++ Sbjct: 1299 KENVILGGIIPAGTGYQKILNK 1320
>RPOC2_ADICA (Q85FM9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1420 Score = 244 bits (623), Expect = 2e-64 Identities = 125/233 (53%), Positives = 169/233 (72%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 LAT GA + G+IL +GD L+T Y++ +S DITQGLPKVEQ+ E+RSI S+S + Sbjct: 1135 LATRGANPHKSSGDILEEGDTLITLPYDRLKSGDITQGLPKVEQLLESRSIASISAGIGD 1194 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQ 341 E W + I +++G PW L+GA ++ ++ L+++I+KVY SQGV+I ++H+EII+RQ Sbjct: 1195 LFEKWCQNITKLIGNPWSHLLGAGRSMEHCQLILIDQIRKVYESQGVRICDKHLEIIVRQ 1254 Query: 340 VTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISE 161 +TS+V SEDG++NVFLPGEL+ L +AER R L +SI+Y I+LG+TRASL+T SF++E Sbjct: 1255 LTSRVVASEDGVTNVFLPGELVELSQAERINRVLKKSIFYEPIVLGMTRASLSTTSFLAE 1314 Query: 160 ASFQETARVLAKAALRGRIDWLKGLKENVVXGGDYTCWYRIPKICASFPTRQE 2 ASFQET RVLAKAALRGRIDWLKGLKENVV G P+I +E Sbjct: 1315 ASFQETTRVLAKAALRGRIDWLKGLKENVVIGDSVPVGTGSPEIYCQLNINKE 1367
>RPOC2_MESVI (Q9MUS7) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1223 Score = 177 bits (449), Expect(2) = 4e-44 Identities = 94/200 (47%), Positives = 131/200 (65%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIPRI 485 G+ + GD LV I+E+S++ DI QGLP++E++ EAR L P L + D + Sbjct: 972 GDFVKSGDTLVMLIFEQSKTGDIVQGLPRIEELLEARRTKGLKP-LPNNLHDLLQSFFDE 1030 Query: 484 LGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGM 305 +G A+ + + ++ LVN++Q VY++QGV I ++HIE+I+RQ+TSKV + E G Sbjct: 1031 ATEKYGIQKAAKKSFEKLQLFLVNEVQSVYKAQGVHISDKHIEVIVRQMTSKVMIEEGG- 1089 Query: 304 SNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAK 125 LPGELI L R E R + Y+ I+LGIT+ASLNT+SFIS ASFQET RVL K Sbjct: 1090 DTTLLPGELIELHRIENMNRNVSVHAKYKPIVLGITKASLNTESFISAASFQETTRVLTK 1149 Query: 124 AALRGRIDWLKGLKENVVXG 65 AA+ G+ DWL+GLKENV+ G Sbjct: 1150 AAIEGKTDWLRGLKENVIIG 1169 Score = 21.2 bits (43), Expect(2) = 4e-44 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGF 37 K+ +G +IP GTGF Sbjct: 1163 KENVIIGRLIPAGTGF 1178
>RPOC2_PORPU (P51250) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1224 Score = 161 bits (407), Expect(2) = 1e-39 Identities = 89/219 (40%), Positives = 143/219 (65%), Gaps = 7/219 (3%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 L + A ++ ++ KG+ L +++++++ DI QGLP++E+I EAR + N Sbjct: 952 LVSNAAILHVDNNALIRKGETLAVLVFDRAKTGDIIQGLPRIEEILEARKKTDVLLNPHD 1011 Query: 520 RIE-DWNERIPRILGVPWGFLI--GAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEII 350 ++ +N L + G + A L+ + ++ LV ++Q VY+SQGV I ++HIE+I Sbjct: 1012 ILDASFN------LYIECGLALYEAARLSFQEIQLLLVKEVQLVYQSQGVNISDKHIEVI 1065 Query: 349 IRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDE----SIYYRAILLGITRASLN 182 +RQ+TSKV++ E+G +LPGEL+ L + E+ +++ + YR ILLGIT+ASLN Sbjct: 1066 VRQMTSKVKI-ENGEETGYLPGELVELQKIEQTNKSMTSRNKLNASYRPILLGITQASLN 1124 Query: 181 TQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 T+SFIS ASFQET +VL +AA+ G++DWL+GLKENV+ G Sbjct: 1125 TESFISAASFQETTKVLTEAAISGKLDWLRGLKENVIIG 1163 Score = 21.9 bits (45), Expect(2) = 1e-39 Identities = 8/19 (42%), Positives = 12/19 (63%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTGF + Sbjct: 1157 KENVIIGRLIPAGTGFNMY 1175
>RPOC2_GLOVI (Q7NDF7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1262 Score = 156 bits (395), Expect(2) = 3e-38 Identities = 101/262 (38%), Positives = 147/262 (56%), Gaps = 50/262 (19%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 L + GA + G+++ +GD L ++E++++ DI QGLP+VE++ E R + +ER Sbjct: 951 LVSGGAILLVVDGDLIQRGDNLALLVFERAKTGDIIQGLPRVEELLEGRKPKEMCVLVER 1010 Query: 520 -------RIEDWNERIPRIL---GVPWGFLIGAELTIAQSRIS----------------- 422 ++ D + ++ + GV +IG L + + Sbjct: 1011 PGKVQITQMPDESYQVSVVEDDGGVTNYPIIGQSLVVVDGQQVQTGESITDGPSNPHDIL 1070 Query: 421 -------------------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSN 299 LVN++Q+VYRSQGV+IH++HIEII+RQ+TSKVRV EDG Sbjct: 1071 RIFTAREGLQKGIESVQRYLVNEVQQVYRSQGVEIHDKHIEIIVRQMTSKVRV-EDGGDT 1129 Query: 298 VFLPGELIGLLRAERAGRALDESIYYRA----ILLGITRASLNTQSFISEASFQETARVL 131 FLPGEL+ L + E+ A+ + A +LLGIT+ASLNT SFIS ASFQET RVL Sbjct: 1130 TFLPGELVELRQIEQVNEAMAVTGGAPADCTPVLLGITKASLNTDSFISAASFQETTRVL 1189 Query: 130 AKAALRGRIDWLKGLKENVVXG 65 +AA+ G+ DWL+GLKENV+ G Sbjct: 1190 TEAAIEGKSDWLRGLKENVIIG 1211 Score = 21.9 bits (45), Expect(2) = 3e-38 Identities = 8/19 (42%), Positives = 12/19 (63%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTGF + Sbjct: 1205 KENVIIGRLIPAGTGFNAY 1223
>RPOC2_SYNEL (Q8DL57) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1324 Score = 154 bits (389), Expect(2) = 4e-38 Identities = 95/270 (35%), Positives = 142/270 (52%), Gaps = 58/270 (21%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS---------- 551 L + GA + G+++ +GD L ++E++++ DI QGLP++E++ EAR Sbjct: 951 LVSPGAVLQIEEGDLVQRGDNLALLVFERAKTGDIIQGLPRIEELLEARHPKEKCVLAVR 1010 Query: 550 --------------------------------------IDSLSPNLERRIEDWNERIPRI 485 +D NL + D I Sbjct: 1011 PGTCQVTYNSDDSVEIKVIEEDGTIQEYPVLPGQNPLVVDGQKVNLADPLTDGPVDPHDI 1070 Query: 484 LGV------PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVR 323 L + P G L A+ ++ + + LVN++Q VY SQG++I ++HIE+I+RQ+TSKVR Sbjct: 1071 LSIYFEYYKPQGLLKAAQTSLEKVQSFLVNEVQSVYLSQGIEIADKHIEVIVRQMTSKVR 1130 Query: 322 VSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRASLNTQSFISEAS 155 + + G + L GEL+ L +AE+A + Y +LLGIT+ASLNT SFIS AS Sbjct: 1131 IDDAG-DTILLSGELMTLRQAEQANEPMALTGGAPAQYTPVLLGITKASLNTDSFISAAS 1189 Query: 154 FQETARVLAKAALRGRIDWLKGLKENVVXG 65 FQET RVL +AA+ G+ DWL+GLKENV+ G Sbjct: 1190 FQETTRVLTEAAIEGKSDWLRGLKENVIIG 1219 Score = 23.9 bits (50), Expect(2) = 4e-38 Identities = 10/27 (37%), Positives = 15/27 (55%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHRSPQDK 4 K+ +G +IP GTGF + S D+ Sbjct: 1213 KENVIIGRLIPAGTGFNSYEESSNGDE 1239
>RPOC2_GRATL (Q6B8R6) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1228 Score = 155 bits (393), Expect(2) = 1e-37 Identities = 89/219 (40%), Positives = 143/219 (65%), Gaps = 7/219 (3%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR--SIDSLSPNL 527 L + G+ ++ + ++ +G+ + T I+E+ ++ DI QGLP++E+I EAR S +P++ Sbjct: 956 LISEGSFLHVNNQALIQRGENIATLIFERVKTGDIVQGLPRIEEILEARKKSDSFFNPHV 1015 Query: 526 ERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIII 347 + + + + L++ ++ LV ++Q VY+SQGV+I ++HIE+I+ Sbjct: 1016 VL-----DSKFRQYVNQGLNLYDATRLSLLILQLYLVKELQLVYQSQGVEIADKHIEVIV 1070 Query: 346 RQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL-----DESIYYRAILLGITRASLN 182 RQ+TSKV++ E+G LPGE+I L + E +AL +E++YY ILLGIT+ASLN Sbjct: 1071 RQMTSKVKI-ENGGDTDHLPGEIIELQKIEMLNKALRLASKEEALYY-PILLGITKASLN 1128 Query: 181 TQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 T+SFIS ASFQET +VL AA+ ++DWL+GLKENV+ G Sbjct: 1129 TESFISAASFQETTKVLTDAAISCKLDWLRGLKENVIIG 1167 Score = 21.2 bits (43), Expect(2) = 1e-37 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGF 37 K+ +G +IP GTGF Sbjct: 1161 KENVIIGRLIPAGTGF 1176
>RPOC2_EUGGR (P23581) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 830 Score = 147 bits (370), Expect(2) = 7e-36 Identities = 88/199 (44%), Positives = 127/199 (63%) Frame = -1 Query: 661 EILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIPRIL 482 ++LY+ V F+ EK+ DI QGLPKVE++ EAR SL + + E L Sbjct: 629 QLLYR----VNFVREKTY--DIVQGLPKVEKLLEARMTSSLKEIINNPHDILTESFFTFL 682 Query: 481 GVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMS 302 + L+ A + + L++ +Q VY+SQGV+I ++HIE+I++Q+TSKV V+ G S Sbjct: 683 D-DYENLVAARKSFEVIQKYLIDGVQTVYKSQGVKIADKHIELIVKQITSKVIVTNPGDS 741 Query: 301 NVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKA 122 + F+ G+ + L E + L SI Y I++G+TR SL++QSFI++ASFQET RVL KA Sbjct: 742 S-FMVGDFLDLNLVEVLNKRLVNSIVYEPIIMGLTRFSLSSQSFIAQASFQETTRVLTKA 800 Query: 121 ALRGRIDWLKGLKENVVXG 65 AL+GR DWL GLKEN+V G Sbjct: 801 ALQGRADWLSGLKENLVLG 819 Score = 23.9 bits (50), Expect(2) = 7e-36 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQ 34 K+ LG IIP GTGF+ Sbjct: 813 KENLVLGNIIPAGTGFK 829
>RPOC2_PROMA (Q7VA30) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1367 Score = 146 bits (368), Expect(2) = 9e-36 Identities = 95/260 (36%), Positives = 138/260 (53%), Gaps = 60/260 (23%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR----------- 518 G+++ +GD L ++E+ ++ DI QGLP++E++ EAR + +RR Sbjct: 989 GDLVQRGDGLALLVFERQKTGDIVQGLPRIEELLEARRPRDSAILCKRRGIVEINQGDDD 1048 Query: 517 ---------IEDWNERIPRILG----------VPWGFLI--------------------- 458 +D E P +LG V G L+ Sbjct: 1049 DSVVVKVIESDDLIEEYPILLGKNVMISDGQEVKAGELLTDGPVNPHELLECFFGDLRDR 1108 Query: 457 -----GAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVF 293 A+ IA+ + LV ++Q VY+SQGV I ++HIE+I+RQ+TSKVR+ ED Sbjct: 1109 KPLMEAAQEAIAKLQHRLVTEVQNVYKSQGVAIDDKHIEVIVRQMTSKVRI-EDAGDTTL 1167 Query: 292 LPGELIGLLRAERAGRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAK 125 LPGELI + + E +A+ + + +LLGIT+ASLNT SFIS ASFQET RVL + Sbjct: 1168 LPGELIEIRQVEDTNQAISITGGAPAEFTPVLLGITKASLNTDSFISAASFQETTRVLTE 1227 Query: 124 AALRGRIDWLKGLKENVVXG 65 AA+ G+ DWL+GLKENV+ G Sbjct: 1228 AAIEGKSDWLRGLKENVIIG 1247 Score = 24.3 bits (51), Expect(2) = 9e-36 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFV 25 K+ +G +IP GTGF FV Sbjct: 1241 KENVIIGRLIPAGTGFSGFV 1260
>RPOC2_GUITH (O78483) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1286 Score = 144 bits (364), Expect(2) = 7e-35 Identities = 97/271 (35%), Positives = 140/271 (51%), Gaps = 59/271 (21%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR----------- 554 L + GA + E++ + D L ++E+S++ DI QGLP++E+I EAR Sbjct: 945 LVSAGAILQIKDHELVQRNDTLAILVFERSKTGDIVQGLPRIEEILEARKPKEPCKLSQK 1004 Query: 553 --SIDSLSPNLERRI--------------------------------EDWNERIP---RI 485 I++ + N E + E + P + Sbjct: 1005 PGKINTTNSNDETEVIQLIDTDGYTTDYIINNNQKLIISNGENVLLAEPLTDGAPNPHEM 1064 Query: 484 LGVPWGFLIGAELTIAQSRISL-------VNKIQKVYRSQGVQIHNRHIEIIIRQVTSKV 326 L + + F +++SL V+++QKVY+SQ V I ++HIE+I+RQ+TSKV Sbjct: 1065 LNLYFNFYTSIITLYESAKLSLQKVQTYLVDEVQKVYQSQNVDISDKHIEVIVRQMTSKV 1124 Query: 325 RVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRASLNTQSFISEA 158 +V EDG LPGEL+ L + E A+ Y ILLGIT+ASLNT SFIS A Sbjct: 1125 KV-EDGGDTTLLPGELVELQQIENINEAMMLTKGVPATYCPILLGITKASLNTDSFISAA 1183 Query: 157 SFQETARVLAKAALRGRIDWLKGLKENVVXG 65 SFQET RVL +AA+ G+ DWL+GLKENV+ G Sbjct: 1184 SFQETTRVLTEAAIEGKADWLRGLKENVIIG 1214 Score = 22.7 bits (47), Expect(2) = 7e-35 Identities = 9/28 (32%), Positives = 15/28 (53%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K+ +G +IP GTGF + + K+ Sbjct: 1208 KENVIIGRLIPAGTGFNAYNEQHKSSKS 1235
>RPOC2_ANASP (P22705) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1355 Score = 142 bits (357), Expect(2) = 2e-33 Identities = 94/267 (35%), Positives = 139/267 (52%), Gaps = 59/267 (22%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIE- 512 GA + G+++ +GD LV ++E++++ DI QGLP++E++ EAR +R E Sbjct: 982 GAVLQIEDGDLVQRGDNLVLLVFERAKTGDIIQGLPRIEELLEARKPKEACILAKRGGEV 1041 Query: 511 -----DWNERIP------------------RILGVPWG---------------------- 467 D +E I + L +P G Sbjct: 1042 KVVYGDGDEAIAIKVIESNGVVTDYPLGPGQNLAMPDGSVVPAGQPLSDGPSNPHEILEV 1101 Query: 466 -FLIGAELTIAQSRISLVNKIQ--------KVYRSQGVQIHNRHIEIIIRQVTSKVRVSE 314 F +G+E + + K+Q VY+SQG+ I ++HIE+I+RQ+T+KVR+ + Sbjct: 1102 FFSLGSEDGVYACASHALQKVQTFLVNEVQMVYQSQGIDIADKHIEVIVRQMTNKVRI-D 1160 Query: 313 DGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRASLNTQSFISEASFQE 146 DG LPGEL+ L + E+ A+ Y +LLGIT+ASLNT SFIS ASFQE Sbjct: 1161 DGGDTTMLPGELVELRQVEQVNEAMAITGGARAQYTPVLLGITKASLNTDSFISAASFQE 1220 Query: 145 TARVLAKAALRGRIDWLKGLKENVVXG 65 T RVL +AA+ G+ DWL+GLKENV+ G Sbjct: 1221 TTRVLTEAAIEGKSDWLRGLKENVIIG 1247 Score = 20.8 bits (42), Expect(2) = 2e-33 Identities = 7/19 (36%), Positives = 12/19 (63%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTG+ + Sbjct: 1241 KENVIIGRLIPAGTGYNTY 1259
>RPOC2_PROMP (Q7V008) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1366 Score = 137 bits (346), Expect(2) = 3e-33 Identities = 93/261 (35%), Positives = 139/261 (53%), Gaps = 61/261 (23%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPK---------------------VEQIFEARSI 548 G+++ +GD L ++E+ ++ DI QGLP+ V QI E Sbjct: 989 GDLVLRGDGLALLVFERQKTGDIVQGLPRIEELLEARRPRDSSILCKKSGVVQIKEGTDE 1048 Query: 547 DSLSPNLERRIEDWNERIPRILG----------VPWGFLI-------------------- 458 +S+S ++ R + +E ++G V G L+ Sbjct: 1049 ESVSLSVIERDDSISE-YQLLMGQNIMVSDGQQVTGGELLTDGPINPHDLLDCLFTDLKD 1107 Query: 457 ------GAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNV 296 A+ +I++ + +VN++Q VY+SQGV I ++HIE+I+RQ+TSKVR+ ED Sbjct: 1108 QKPLMEAAQESISKLQRKMVNEVQNVYKSQGVAISDKHIEVIVRQMTSKVRI-EDAGDTT 1166 Query: 295 FLPGELIGLLRAERAGRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLA 128 LPGELI L + E +A+ + + +LLGIT+ASLNT SFIS ASFQET RVL Sbjct: 1167 LLPGELIELRQVEDTNQAMSITGGAPAEFTPVLLGITKASLNTDSFISAASFQETTRVLT 1226 Query: 127 KAALRGRIDWLKGLKENVVXG 65 +AA+ G+ DWL+GLKENV+ G Sbjct: 1227 EAAIEGKSDWLRGLKENVIIG 1247 Score = 24.3 bits (51), Expect(2) = 3e-33 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFV 25 K+ +G +IP GTGF FV Sbjct: 1241 KENVIIGRLIPAGTGFSGFV 1260
>RPOC_CYAME (Q85FR6) Bifunctional DNA-directed RNA polymerase beta' and beta''| chain (EC 2.7.7.6) (PEP) [Includes: DNA-directed RNA polymerase beta' chain (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit); DNA-directed RNA poly Length = 1676 Score = 140 bits (352), Expect = 5e-33 Identities = 88/242 (36%), Positives = 140/242 (57%), Gaps = 42/242 (17%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNL-------ERRIEDW 506 G+++ +GD L + ++E+ ++ DI QGLP++E+I EAR + E+ + Sbjct: 1429 GDLVNEGDHLASLVFEQVKTGDIIQGLPRIEEILEARKPKNSCELAQFDGVIQEQSLVSD 1488 Query: 505 NERIPRILG----------------------------------VPW-GFLIGAELTIAQS 431 + R+ I G VP+ G + A + A+ Sbjct: 1489 DGRVQAIKGTLIVCEGTRVQAGEPLTDGAVNAHEWLQIHFNNAVPYRGMVEAARESFAKL 1548 Query: 430 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 251 + L++++Q+VY+SQGV I ++HIE+I+RQ+TSKV + + G S+ FLPG+L+ L Sbjct: 1549 QAKLLHQVQQVYKSQGVDIADKHIEVILRQMTSKVILDDPGDSD-FLPGQLVYLNEI--- 1604 Query: 250 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 71 A + + + +LLGIT+A+LNT+SFIS ASFQET R+LA+AA+ G+ID L+GLKENV+ Sbjct: 1605 --ASYKHVIFHPVLLGITKAALNTESFISAASFQETTRILAQAAMEGQIDQLRGLKENVI 1662 Query: 70 XG 65 G Sbjct: 1663 MG 1664
>RPOC2_PROMT (Q46J24) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1369 Score = 133 bits (335), Expect(2) = 5e-32 Identities = 71/134 (52%), Positives = 97/134 (72%), Gaps = 4/134 (2%) Frame = -1 Query: 454 AELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 275 A+ IA+ + +V+++Q VY+SQGV I ++HIE+I+RQ+TSKVR+ ED FLPGELI Sbjct: 1117 AQEAIAKLQHRMVSEVQNVYKSQGVAIDDKHIEVIVRQMTSKVRI-EDAGDTTFLPGELI 1175 Query: 274 GLLRAERAGRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGR 107 L + E +A+ + + +LLGIT+ASLNT SFIS ASFQET RVL +AA+ G+ Sbjct: 1176 ELRQVEDTNQAISITGGAPSEFTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGK 1235 Query: 106 IDWLKGLKENVVXG 65 DWL+GLKENV+ G Sbjct: 1236 SDWLRGLKENVIIG 1249 Score = 43.5 bits (101), Expect = 6e-04 Identities = 15/37 (40%), Positives = 28/37 (75%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR 554 G+++ +GD L ++E+ ++ DI QGLP++E++ EAR Sbjct: 991 GDLVQRGDGLALLVFERQKTGDIVQGLPRIEELLEAR 1027 Score = 24.3 bits (51), Expect(2) = 5e-32 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFV 25 K+ +G +IP GTGF FV Sbjct: 1243 KENVIIGRLIPAGTGFSGFV 1262
>RPOC2_SYNPX (Q7U8K2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1364 Score = 132 bits (332), Expect(2) = 3e-31 Identities = 78/159 (49%), Positives = 100/159 (62%), Gaps = 4/159 (2%) Frame = -1 Query: 529 LERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEII 350 LE ED R P + A+ IA + LV ++Q VY+SQGV I ++HIE+I Sbjct: 1098 LECFFEDLRSRKP--------LMDAAQEAIANLQHRLVTEVQNVYKSQGVSIDDKHIEVI 1149 Query: 349 IRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRASLN 182 +RQ+TSKVRV ED LPGELI L + E +A+ + +LLGIT+ASLN Sbjct: 1150 VRQMTSKVRV-EDAGDTTLLPGELIELRQVEDTNQAMAITGGAPAEFTPVLLGITKASLN 1208 Query: 181 TQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 T SFIS ASFQET RVL +AA+ G+ DWL+GLKENV+ G Sbjct: 1209 TDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIG 1247 Score = 43.5 bits (101), Expect = 6e-04 Identities = 15/37 (40%), Positives = 28/37 (75%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR 554 G+++ +GD L ++E+ ++ DI QGLP++E++ EAR Sbjct: 989 GDLVQRGDGLALLVFERQKTGDIVQGLPRIEELLEAR 1025 Score = 22.7 bits (47), Expect(2) = 3e-31 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTGF F Sbjct: 1241 KENVIIGRLIPAGTGFSGF 1259
>RPOC2_PROMM (Q7V5P3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1374 Score = 131 bits (330), Expect(2) = 6e-31 Identities = 71/134 (52%), Positives = 94/134 (70%), Gaps = 4/134 (2%) Frame = -1 Query: 454 AELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 275 A+ IA+ + LV ++Q VY+SQGV I ++HIE+I+RQ+TSKVR+ ED LPGELI Sbjct: 1123 AQEAIAKLQHRLVTEVQNVYKSQGVSIDDKHIEVIVRQMTSKVRI-EDAGDTTLLPGELI 1181 Query: 274 GLLRAERAGRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGR 107 L + E +A+ + +LLGIT+ASLNT SFIS ASFQET RVL +AA+ G+ Sbjct: 1182 ELRQVEDTNQAMAITGGAPSEFTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGK 1241 Query: 106 IDWLKGLKENVVXG 65 DWL+GLKENV+ G Sbjct: 1242 SDWLRGLKENVIIG 1255 Score = 43.5 bits (101), Expect = 6e-04 Identities = 15/37 (40%), Positives = 28/37 (75%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR 554 G+++ +GD L ++E+ ++ DI QGLP++E++ EAR Sbjct: 997 GDLVQRGDGLALLVFERQKTGDIVQGLPRIEELLEAR 1033 Score = 22.7 bits (47), Expect(2) = 6e-31 Identities = 9/19 (47%), Positives = 12/19 (63%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTGF F Sbjct: 1249 KENVIIGRLIPAGTGFSGF 1267
>RPOC2_SYNY3 (P73334) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1317 Score = 133 bits (334), Expect(2) = 6e-31 Identities = 68/123 (55%), Positives = 90/123 (73%), Gaps = 4/123 (3%) Frame = -1 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 LVN++Q VY+SQGV I ++HIE+I+RQ+T+KVR+ +DG LPGEL+ L + E+ A Sbjct: 1093 LVNEVQTVYQSQGVDISDKHIEVIVRQMTAKVRI-DDGGDTTMLPGELVELRQVEQVNEA 1151 Query: 241 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 + Y +LLGIT+ASLNT SFIS ASFQET RVL +AA+ G+ DWL+GLKENV Sbjct: 1152 MGITGSAPARYTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENV 1211 Query: 73 VXG 65 + G Sbjct: 1212 IIG 1214 Score = 48.1 bits (113), Expect = 3e-05 Identities = 18/45 (40%), Positives = 34/45 (75%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR 554 GA ++ G+++ +GD LV ++E++++ DI QGLP++E++ EAR Sbjct: 949 GAVLHIEDGDLVQRGDNLVLLVFERAKTGDIVQGLPRIEELLEAR 993 Score = 21.2 bits (43), Expect(2) = 6e-31 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGF 37 K+ +G +IP GTGF Sbjct: 1208 KENVIIGRLIPAGTGF 1223
>RPOC2_CYAPA (P48120) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1265 Score = 131 bits (330), Expect(2) = 6e-31 Identities = 90/261 (34%), Positives = 137/261 (52%), Gaps = 61/261 (23%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR----------------------- 554 G+++ G+ L ++E++++ DI QGLP++E++ EAR Sbjct: 953 GDLVQSGESLALLVFERAKTGDIIQGLPRIEELLEARKPKDNCVLSTHPGFTQLYYSETI 1012 Query: 553 -----SIDSLSPNLERR------------------IEDWNERIPRILGVPWGFLIGAE-- 449 S+D ++ LE + + + + + IL + + Sbjct: 1013 ELKIKSLDKINTLLELQPGVFPTVTNNQFIEAGAPLSEGDISVHEILEIFFNLYFKNRVN 1072 Query: 448 -LTIAQSRISLVNKIQK--------VYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNV 296 L++A + + KIQ+ VY+SQG+ I ++HIEIII+Q+T+KV++ E+G Sbjct: 1073 CLSLADAIHLSLQKIQQFLVSEVQSVYQSQGIDISDKHIEIIIKQMTNKVKI-EEGGDTT 1131 Query: 295 FLPGELIGLLRAERAGRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLA 128 LP ELI + E+ S Y ILLGIT++SLNTQSFIS ASFQET RVLA Sbjct: 1132 LLPNELIEFQQIEKMNEKFSTSNGQLASYTPILLGITKSSLNTQSFISAASFQETTRVLA 1191 Query: 127 KAALRGRIDWLKGLKENVVXG 65 KAA+ G+ID L+GLKENV+ G Sbjct: 1192 KAAVEGKIDQLRGLKENVIIG 1212 Score = 22.7 bits (47), Expect(2) = 6e-31 Identities = 8/19 (42%), Positives = 12/19 (63%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTGF + Sbjct: 1206 KENVIIGNLIPAGTGFSAY 1224
>RPOC2_NEPOL (Q9TL04) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1463 Score = 133 bits (334), Expect = 6e-31 Identities = 81/194 (41%), Positives = 119/194 (61%), Gaps = 3/194 (1%) Frame = -1 Query: 637 LVTFIYEKSRSSDITQGLPKVEQIFEAR---SIDSLSPNLERRIEDWNERIPRILGVPWG 467 L +Y K+++ DI QGLPK+E+I EAR + + NL+ ++ + + L + Sbjct: 1146 LAHLLYFKTKTGDIVQGLPKIEEILEARRKKGNEIIRSNLQDFVQQFYQDN---LDEGFS 1202 Query: 466 FLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLP 287 + T+ ++ ++ ++Q VYRSQGVQI ++H+EII ++TS+V V E LP Sbjct: 1203 RKYASTRTMRAMQVLILRRVQLVYRSQGVQISDKHLEIISLRMTSRVLV-EKAYGTGILP 1261 Query: 286 GELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGR 107 GE+I RA+ + I Y I+LGIT+ASL T+ FIS ASFQET RVL +A L+G+ Sbjct: 1262 GEIIEKRRADMLNQGRTR-IRYCPIVLGITKASLTTKGFISSASFQETTRVLTQAVLQGK 1320 Query: 106 IDWLKGLKENVVXG 65 DWL GLKENV+ G Sbjct: 1321 SDWLLGLKENVILG 1334
>RPOC2_CYACA (Q9TM34) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1269 Score = 132 bits (333), Expect = 8e-31 Identities = 66/126 (52%), Positives = 96/126 (76%), Gaps = 4/126 (3%) Frame = -1 Query: 430 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 251 R+ L+ +IQ+VY+SQ ++I+++HIE+IIRQ+TSKV + E G + +F PGEL+ + + E+ Sbjct: 1098 RLELLKEIQQVYQSQKIEINDKHIEVIIRQMTSKVLIQERGDTTLF-PGELVTINQIEKI 1156 Query: 250 GRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 83 A+ + Y+ +LLGIT+ASLNT SFIS ASFQET R+L +AA+ G++DWLKGLK Sbjct: 1157 NSAIIAVNKKEAKYKPVLLGITKASLNTDSFISAASFQETTRILTEAAIEGKVDWLKGLK 1216 Query: 82 ENVVXG 65 ENV+ G Sbjct: 1217 ENVIIG 1222 Score = 50.1 bits (118), Expect = 7e-06 Identities = 20/49 (40%), Positives = 35/49 (71%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR 554 L + G ++ ++GE++ KGD L +++K ++ DI QGLP++E+I EAR Sbjct: 953 LISPGTLIHVNHGELIRKGDYLALLVFDKIKTGDIIQGLPRIEEILEAR 1001
>RPOC2_ASTLO (P58132) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 817 Score = 126 bits (317), Expect(2) = 6e-30 Identities = 77/204 (37%), Positives = 119/204 (58%), Gaps = 6/204 (2%) Frame = -1 Query: 658 ILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS--IDSLSPNLERRIED----WNER 497 I+ K L + +K ++ DI QGL ++E++FEA+ I + NL ++D +N++ Sbjct: 613 IMKKNALLYKAVTKKEKNKDIIQGLVEIEKLFEAKKSFIIDKTKNLHEILKDLFVNYNKK 672 Query: 496 IPRILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVS 317 + I Q I + +IQ +Y+ QG+ I N+HIEIII+Q+TSKV + Sbjct: 673 YNNSTSTR------KSIEIIQKYI--LEEIQSIYKEQGINISNKHIEIIIKQMTSKVIIK 724 Query: 316 EDGMSNVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETAR 137 G S F+ GE+ + + + + I Y ILLGIT++SL TQSFIS+ +FQE+ + Sbjct: 725 NAGNSP-FIVGEICNINSIDNLNKNYEHKIIYEPILLGITKSSLYTQSFISQITFQESIK 783 Query: 136 VLAKAALRGRIDWLKGLKENVVXG 65 L KAA+ +IDWL GLKEN++ G Sbjct: 784 SLIKAAIENKIDWLYGLKENLILG 807 Score = 24.3 bits (51), Expect(2) = 6e-30 Identities = 9/17 (52%), Positives = 13/17 (76%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQ 34 K+ LG +IP+GTGF+ Sbjct: 801 KENLILGNLIPIGTGFK 817
>RPOC2_SYNP6 (Q5MZ21) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1318 Score = 126 bits (317), Expect(2) = 2e-29 Identities = 65/123 (52%), Positives = 88/123 (71%), Gaps = 4/123 (3%) Frame = -1 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 LVN++Q VY+SQG+ I ++HIE+I+RQ+TSKVR+ +DG + LPGEL L + Sbjct: 1106 LVNEVQSVYQSQGIDISDKHIEVIVRQMTSKVRI-DDGGDTIMLPGELHELREVYNSNNT 1164 Query: 241 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 + + + +LLGIT+ASLNT SFIS ASFQET RVL +AA+ G+ DWL+GLKENV Sbjct: 1165 MALTGMAPAQFTPVLLGITKASLNTNSFISAASFQETTRVLTEAAIEGKSDWLRGLKENV 1224 Query: 73 VXG 65 + G Sbjct: 1225 IIG 1227 Score = 43.5 bits (101), Expect = 6e-04 Identities = 17/45 (37%), Positives = 32/45 (71%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR 554 GA ++ ++ +GD LV ++E++++ DI QGLP++E++ EAR Sbjct: 961 GAVLHVEDKGLVQRGDNLVLLVFERAKTGDIIQGLPRIEELLEAR 1005 Score = 22.3 bits (46), Expect(2) = 2e-29 Identities = 8/19 (42%), Positives = 13/19 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTGF+ + Sbjct: 1221 KENVIIGRLIPAGTGFKAY 1239
>RPOC_METCA (Q60A05) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 127 bits (319), Expect = 3e-29 Identities = 95/251 (37%), Positives = 132/251 (52%), Gaps = 43/251 (17%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE----- 524 GA + G+++ GD L E S++ DIT GLP+V +FEAR + E Sbjct: 1104 GAIIGIRDGDLVEVGDVLARIPQESSKTRDITGGLPRVADLFEARKTKDPAILAEATGTV 1163 Query: 523 ---------RRI-------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS-------- 422 RR+ E +P R + V G + TIA+ ++ Sbjct: 1164 SFGKETKGKRRLIITDASGEQHEVMVPKWRNITVFEGEHVEQGETIAEGELTPHDILRLR 1223 Query: 421 --------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLL 266 LV +IQ VYR QGV+I+++HIE+IIRQ+ KV +++ G S+ FL GE + Sbjct: 1224 GTAELASYLVKEIQDVYRLQGVKINDKHIEVIIRQMLRKVEITDPGDSS-FLRGEQVDRS 1282 Query: 265 RAERAGRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW 98 R L+E Y +LLGIT+ASL+T+SFIS ASFQET RVL +AA+RG D Sbjct: 1283 RLLEENDRLEEEGKVPACYEPVLLGITKASLSTESFISAASFQETTRVLTEAAIRGSTDR 1342 Query: 97 LKGLKENVVXG 65 L+GLKENV+ G Sbjct: 1343 LQGLKENVIVG 1353
>RPOC_THETN (Q8R7U7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1183 Score = 127 bits (318), Expect(2) = 5e-29 Identities = 87/222 (39%), Positives = 125/222 (56%), Gaps = 43/222 (19%) Frame = -1 Query: 601 DITQGLPKVEQIFEARS---------------IDSLSPNLERRIEDWNERIPRILGVPWG 467 DITQGLP+VE++FEAR I+ E + D I + +P+G Sbjct: 923 DITQGLPRVEELFEARKPKGLAVITEISGVVRINESKKRREITVVDEENNISKTYLIPYG 982 Query: 466 FLI----------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHNRHI 359 + G ELT I + L+ ++QKVYR QGV+I+++HI Sbjct: 983 SRLKVRDGQWVQAGDELTEGSVNPHDLLKIKGIYAVQSYLLQEVQKVYRLQGVEINDKHI 1042 Query: 358 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR-ALDESIYY---RAILLGITRA 191 EIIIRQ+ KV+V + G +++ LPGELI + + E + A+++ + R LLGIT+A Sbjct: 1043 EIIIRQMMKKVKVEDPGDTSM-LPGELIDMFKFEEENKKAIEKGLRPATGRRALLGITKA 1101 Query: 190 SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 +L T SF+S ASFQET RVL AA++G++D L GLKENV+ G Sbjct: 1102 ALATDSFLSAASFQETTRVLTDAAIKGKVDPLIGLKENVIIG 1143 Score = 20.8 bits (42), Expect(2) = 5e-29 Identities = 7/19 (36%), Positives = 12/19 (63%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTG ++ Sbjct: 1137 KENVIIGKLIPAGTGLSRY 1155
>RPOC_CLOPE (Q93R87) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1178 Score = 124 bits (311), Expect(2) = 1e-28 Identities = 87/222 (39%), Positives = 125/222 (56%), Gaps = 42/222 (18%) Frame = -1 Query: 604 SDITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNER----------------IP-- 491 +DITQGLP+VE++FEAR L+ E RIE+ ++ IP Sbjct: 924 ADITQGLPRVEELFEARKPKGLAIVSEVAGTVRIEETKKKRTVYVVTDSGEEYSYDIPFG 983 Query: 490 RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHNRHI 359 L V G IGA I + ++ L++++QKVYR QGV I+++H+ Sbjct: 984 SRLKVKDGIAIGAGDEITEGSVNPHDIMSIKGVDGAREYLLSEVQKVYRLQGVDINDKHL 1043 Query: 358 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLL----RAERAGRALDESIYYRAILLGITRA 191 E+++RQ+T K++V+E G +N+ LPG +I + ER E +LLGIT+A Sbjct: 1044 EVVVRQMTRKIKVTEQGDTNL-LPGVMIDMFDFRAENERVESFGGEKAQGDIVLLGITKA 1102 Query: 190 SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 +L T SF+S ASFQET RVL AA++G+ID L GLKENV+ G Sbjct: 1103 ALATDSFLSAASFQETTRVLTDAAIKGKIDPLVGLKENVIIG 1144 Score = 21.9 bits (45), Expect(2) = 1e-28 Identities = 8/19 (42%), Positives = 12/19 (63%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTG K+ Sbjct: 1138 KENVIIGKLIPAGTGMMKY 1156
>RPOC_LACLA (Q9CEN7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 123 bits (309), Expect(2) = 4e-28 Identities = 89/229 (38%), Positives = 124/229 (54%), Gaps = 48/229 (20%) Frame = -1 Query: 607 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRI------------- 485 SSDITQGLP+V++IFEAR+ I ++ +E +ED R I Sbjct: 947 SSDITQGLPRVQEIFEARNPKGEAIITEVTGTVESIVEDPATRTREITVKGKTDTRSYTV 1006 Query: 484 -----LGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHN 368 L V G I + Q I L+ ++QK YRSQGV+I + Sbjct: 1007 GMADVLMVEEGEFIHRGAPLIQGSIEPKHLLQVRDALSVETYLLGEVQKTYRSQGVEIGD 1066 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYY--------RAI 212 +HIE+++RQ+ KVRV ++G +++ LPG L+ + E AL+E+ R + Sbjct: 1067 KHIEVMVRQMLRKVRVMDNGSTDI-LPGTLMDISDFE----ALNETALLNGEMPATGRPV 1121 Query: 211 LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 L+GIT+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1122 LMGITKASLETNSFLSAASFQETTRVLTDAAIRGKEDHLLGLKENVIIG 1170 Score = 21.2 bits (43), Expect(2) = 4e-28 Identities = 9/24 (37%), Positives = 14/24 (58%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHRSP 13 K+ +G IIP GTG ++ + P Sbjct: 1164 KENVIIGKIIPAGTGMFRYRNIEP 1187
>RPOC_PSEAE (Q9HWC9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 121 bits (304), Expect = 2e-27 Identities = 95/251 (37%), Positives = 134/251 (53%), Gaps = 44/251 (17%) Frame = -1 Query: 685 ATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL- 527 A VN G + GD + E S++ DIT GLP+V +FEAR + +S + Sbjct: 1105 ALVNLTDGAKVSIGDVVARIPQETSKTRDITGGLPRVADLFEARRPKEPSILAEISGTIS 1164 Query: 526 -------ERRI--------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS-------- 422 +RR+ + + E IP R L V G + I+ + Sbjct: 1165 FGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFEGEQVNRGEVISDGPSNPHDILRLL 1224 Query: 421 --------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLL 266 +VN+IQ VYR QGV+I+++HIE I+RQ+ KV VSE G S+ F+ G+ + L Sbjct: 1225 GVSSLAKYIVNEIQDVYRLQGVKINDKHIETILRQMLRKVEVSESGDSS-FIKGDQVELT 1283 Query: 265 RA----ERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW 98 + E+ G Y +LLGIT+ASL+T+SFIS ASFQET RVL +AA+ G+ D+ Sbjct: 1284 QVLEENEQLGTEDKFPAKYERVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDF 1343 Query: 97 LKGLKENVVXG 65 L+GLKENVV G Sbjct: 1344 LRGLKENVVVG 1354
>RPOC_PELUB (Q4FLL3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1389 Score = 121 bits (303), Expect = 2e-27 Identities = 87/243 (35%), Positives = 125/243 (51%), Gaps = 43/243 (17%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE------------- 524 G+ ++ GD + E +++ DIT GLP+V ++FEAR + E Sbjct: 1105 GQKIFAGDIIARLPKETTKTKDITGGLPRVAELFEARKAKDSAIIAENDGQVLFGKEVRG 1164 Query: 523 -RRI-------EDWNERIPR------------------ILGVPWGFLIGAELTIAQSRIS 422 +RI E N IP+ + G P I L I Sbjct: 1165 KQRISIQPDNGEPSNYLIPKGKHINFNQGEKIKKGEYLLDGQPLPHDILRILGIKDLTEY 1224 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 VN++Q+VYR QGV I+++HIE I+RQ+ KV + E G S+ +LPGE+I ++ + Sbjct: 1225 FVNQVQEVYRLQGVIINDKHIETILRQMLKKVEIKESGDSS-YLPGEMIDRIKFDNTNEK 1283 Query: 241 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 L +L+GIT+ASL T+SFIS ASFQET RVL AA++G++D L GLKENV Sbjct: 1284 LVAEGKNPASGERVLMGITKASLQTESFISAASFQETTRVLTDAAIKGKVDPLNGLKENV 1343 Query: 73 VXG 65 + G Sbjct: 1344 IVG 1346
>RPOC_LACSS (Q38UQ3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1214 Score = 115 bits (288), Expect(2) = 3e-27 Identities = 83/225 (36%), Positives = 123/225 (54%), Gaps = 46/225 (20%) Frame = -1 Query: 601 DITQGLPKVEQIFEARSIDSLSPNLE----------------RRIEDWNERIPRILGVPW 470 DITQGLP++++IFEAR+ +++ E R I E R VP+ Sbjct: 949 DITQGLPRIQEIFEARNPKAIATITEVTGEVIAVEENPAEHTREITVQGETDTRSYSVPY 1008 Query: 469 --------GFLI--GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHNRH 362 G +I G ++T + + L++++QKVYR QG++I ++H Sbjct: 1009 TSNIIVSEGDMIHRGEKITGGSVDPKQLIKVRDVLSTENYLLHEVQKVYRMQGIEIGDKH 1068 Query: 361 IEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIY------YRAILLGI 200 +E+++RQ+ KVRV + G + + LPG L+ + +E R D I R +LLGI Sbjct: 1069 VEVMVRQMLRKVRVMDPGDTEI-LPGTLMDI--SEFTDRNHDTLISGGVPATCRPVLLGI 1125 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 T+ASL T SF+S ASFQET RVL A++RG+ D L GLKENV+ G Sbjct: 1126 TKASLETNSFLSAASFQETTRVLTDASIRGKSDPLLGLKENVIIG 1170 Score = 26.6 bits (57), Expect(2) = 3e-27 Identities = 10/25 (40%), Positives = 15/25 (60%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHRSPQ 10 K+ +G I+P GTG K+ H P+ Sbjct: 1164 KENVIIGKIVPAGTGMAKYRHMEPK 1188
>RPOC_CARHZ (Q3A9Q8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1152 Score = 119 bits (298), Expect(2) = 3e-27 Identities = 82/222 (36%), Positives = 122/222 (54%), Gaps = 43/222 (19%) Frame = -1 Query: 601 DITQGLPKVEQIFEAR------------SIDSLSPNLERR-IEDWNERIPRILGVPWGF- 464 DITQGLP+VE++FEAR + + N RR IE N+ P + Sbjct: 909 DITQGLPRVEELFEARRPKGQAIITEIDGVVEVRDNKGRREIEVINQETGERKVYPITYQ 968 Query: 463 -----------LIGAELT--------------IAQSRISLVNKIQKVYRSQGVQIHNRHI 359 G ELT I +++ L+ ++QKVYR QGV+I+++HI Sbjct: 969 ARIKVQTGDKVYAGDELTEGPINPHDLIKVKGIEGAQLYLLQEVQKVYRMQGVEINDKHI 1028 Query: 358 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRA 191 E++IRQ+ KV++ + G +++ LPG L+ + E + + + +LLGIT+A Sbjct: 1029 EVVIRQMLRKVKIEDSGDTDL-LPGSLVDIFEFEDENAKVIAKGGKPATAKRVLLGITKA 1087 Query: 190 SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 SL T SF+S ASFQET RVL +AA++G++D L GLKENV+ G Sbjct: 1088 SLATDSFLSAASFQETTRVLTEAAIKGKVDPLLGLKENVIIG 1129 Score = 22.7 bits (47), Expect(2) = 3e-27 Identities = 10/28 (35%), Positives = 16/28 (57%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K+ +G +IP GTG ++ + Q KN Sbjct: 1123 KENVIIGKLIPAGTGMARYRNIMVQAKN 1150
>RPOC_PSEPU (P19176) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1398 Score = 120 bits (302), Expect = 3e-27 Identities = 94/237 (39%), Positives = 128/237 (54%), Gaps = 43/237 (18%) Frame = -1 Query: 646 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 515 GD + E S++ DIT GLP+V +FEAR S E RR+ Sbjct: 1118 GDVIARIPQETSKTRDITGGLPRVADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVI 1177 Query: 514 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 407 E + E IP R L V G + I+ + N+I Sbjct: 1178 TPTDGSEPYEELIPKWRHLNVFEGEQVNRGEVISDGPSDPDDILRLLGVSALGKYIDNEI 1237 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA--ERAGRALDE 233 Q VYR QGV+I+++HIE I+RQ+ KVR+SE G S+ F+ G+ + A ERA + D+ Sbjct: 1238 QDVYRLQGVKINDKHIETILRQMLRKVRISESGDSS-FIKGDQMEYPGAGRERASASEDK 1296 Query: 232 SIY-YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 I + +LLGIT+ASL+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENVV G Sbjct: 1297 FISKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVG 1353
>RPOC_ZYMMO (Q5NPK4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1391 Score = 120 bits (302), Expect = 3e-27 Identities = 93/258 (36%), Positives = 134/258 (51%), Gaps = 46/258 (17%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSL 539 + + G ++ G+ + G L E +++ DIT GLP+V ++FEAR I + Sbjct: 1084 MLSPGTVISVDDGQEVLAGTVLARVSRESAKTRDITGGLPRVAELFEARKPKENAIIAKV 1143 Query: 538 SPNLER------------RIEDWNERIPRILGVPWGFLIGAE------------------ 449 S +E R +D +E I + VP +I A+ Sbjct: 1144 SGRVEFGKDYKAKRKVIIRPDDGSEPIEYL--VPKSKVIDAQEGDHVKRGDNLISGSPDP 1201 Query: 448 ------LTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLP 287 L + LV++IQ+VYR QGV+I+++HIE I+RQ+ KV ++ G S +FLP Sbjct: 1202 HDILEVLGVEALAEYLVSEIQEVYRLQGVKINDKHIETIVRQMLLKVEITHAGDS-IFLP 1260 Query: 286 GELIGLLRAERAGRALD----ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAA 119 GE + E L+ E ILLGIT+ASL T+SFIS ASFQET RVL +AA Sbjct: 1261 GEQVEKEDFEAVNAKLESQGQEPAQATPILLGITKASLQTRSFISAASFQETTRVLTEAA 1320 Query: 118 LRGRIDWLKGLKENVVXG 65 ++G+ID L GLKENV+ G Sbjct: 1321 VQGKIDTLSGLKENVIVG 1338
>RPOC_FUSNN (Q8RHI7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1319 Score = 118 bits (296), Expect(2) = 3e-27 Identities = 89/254 (35%), Positives = 133/254 (52%), Gaps = 46/254 (18%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS-------------I 548 GA + G + KGD + I + DIT GLP+V+++FEAR+ I Sbjct: 1039 GAYMMVRDGAKVKKGDIIAKIIKLGEGTKDITGGLPRVQELFEARNPKGKATLAEIDGRI 1098 Query: 547 DSLSP-----------NLERRIEDWNERIP--RILGVPWGFLIGAELTIAQSRIS----- 422 + L+ +LE E IP L V G I A I + IS Sbjct: 1099 EILTTKKKQMRVVNVRSLENPEEFKEYLIPMGERLVVTDGLKIKAGDKITEGAISPYDVL 1158 Query: 421 -----------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 275 ++ +Q+VYR QGV ++++HIEII++Q+ KVR+ + G S +FL E+I Sbjct: 1159 NIKGLVAAEQFILESVQQVYRDQGVTVNDKHIEIIVKQMFRKVRIIDSGAS-LFLEDEVI 1217 Query: 274 GLLRAERAGRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGR 107 + + L+E I Y ++ GIT+A++NT SFIS ASFQET +VL+ AA+ G+ Sbjct: 1218 EKRVVDLENKKLEEQGKALIKYEPVIQGITKAAVNTGSFISAASFQETTKVLSNAAIEGK 1277 Query: 106 IDWLKGLKENVVXG 65 +D+L+GLKENV+ G Sbjct: 1278 VDYLEGLKENVILG 1291 Score = 23.1 bits (48), Expect(2) = 3e-27 Identities = 10/19 (52%), Positives = 12/19 (63%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ LG IP GTGF K+ Sbjct: 1285 KENVILGKKIPAGTGFNKY 1303
>RPOC_STRPM (Q48VR0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 116 bits (291), Expect(2) = 3e-27 Identities = 86/225 (38%), Positives = 128/225 (56%), Gaps = 44/225 (19%) Frame = -1 Query: 607 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRI-------LG---V 476 ++DITQGLP++++IFEAR+ I + N+ ED + R ++ +G V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGNVVEIEEDASTRTKKVYVQGKTGMGEYVV 1007 Query: 475 PWGFLI----------GAELT---IAQSRIS-----------LVNKIQKVYRSQGVQIHN 368 P+ + GA LT I R+ L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVNRGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 200 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 T+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIG 1171 Score = 25.0 bits (53), Expect(2) = 3e-27 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K+ +G IIP GTG ++ + PQ N Sbjct: 1165 KENVIIGKIIPAGTGMARYRNIEPQAMN 1192
>RPOC_STRP8 (Q8P2Y2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 116 bits (291), Expect(2) = 3e-27 Identities = 86/225 (38%), Positives = 128/225 (56%), Gaps = 44/225 (19%) Frame = -1 Query: 607 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRI-------LG---V 476 ++DITQGLP++++IFEAR+ I + N+ ED + R ++ +G V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGNVVEIEEDASTRTKKVYVQGKTGMGEYVV 1007 Query: 475 PWGFLI----------GAELT---IAQSRIS-----------LVNKIQKVYRSQGVQIHN 368 P+ + GA LT I R+ L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVNRGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 200 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 T+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIG 1171 Score = 25.0 bits (53), Expect(2) = 3e-27 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K+ +G IIP GTG ++ + PQ N Sbjct: 1165 KENVIIGKIIPAGTGMARYRNIEPQAMN 1192
>RPOC_STRP6 (Q5XE96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 116 bits (291), Expect(2) = 3e-27 Identities = 86/225 (38%), Positives = 128/225 (56%), Gaps = 44/225 (19%) Frame = -1 Query: 607 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRI-------LG---V 476 ++DITQGLP++++IFEAR+ I + N+ ED + R ++ +G V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGNVVEIEEDASTRTKKVYVQGKTGMGEYVV 1007 Query: 475 PWGFLI----------GAELT---IAQSRIS-----------LVNKIQKVYRSQGVQIHN 368 P+ + GA LT I R+ L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVNRGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 200 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 T+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIG 1171 Score = 25.0 bits (53), Expect(2) = 3e-27 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K+ +G IIP GTG ++ + PQ N Sbjct: 1165 KENVIIGKIIPAGTGMARYRNIEPQAMN 1192
>RPOC_STRP3 (Q8K8W2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 116 bits (291), Expect(2) = 3e-27 Identities = 86/225 (38%), Positives = 128/225 (56%), Gaps = 44/225 (19%) Frame = -1 Query: 607 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRI-------LG---V 476 ++DITQGLP++++IFEAR+ I + N+ ED + R ++ +G V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGNVVEIEEDASTRTKKVYVQGKTGMGEYVV 1007 Query: 475 PWGFLI----------GAELT---IAQSRIS-----------LVNKIQKVYRSQGVQIHN 368 P+ + GA LT I R+ L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVNRGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 200 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 T+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIG 1171 Score = 25.0 bits (53), Expect(2) = 3e-27 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K+ +G IIP GTG ++ + PQ N Sbjct: 1165 KENVIIGKIIPAGTGMARYRNIEPQAMN 1192
>RPOC_STRP1 (P0C0E0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 116 bits (290), Expect(2) = 4e-27 Identities = 80/225 (35%), Positives = 122/225 (54%), Gaps = 44/225 (19%) Frame = -1 Query: 607 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRI------------- 485 ++DITQGLP++++IFEAR+ I + N+ ED + R ++ Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGNVVEIEEDASTRTKKVYVQGKTGMGEYVI 1007 Query: 484 -----LGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHN 368 + V G + + + I L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVNRGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 200 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 T+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIG 1171 Score = 25.0 bits (53), Expect(2) = 4e-27 Identities = 11/28 (39%), Positives = 16/28 (57%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K+ +G IIP GTG ++ + PQ N Sbjct: 1165 KENVIIGKIIPAGTGMARYRNIEPQAMN 1192
>RPOC_CLOAB (Q97EH0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1182 Score = 120 bits (300), Expect(2) = 4e-27 Identities = 86/222 (38%), Positives = 123/222 (55%), Gaps = 42/222 (18%) Frame = -1 Query: 604 SDITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNER----------------IP-- 491 SDITQGLP+VE++FEAR L+ E RIE+ ++ IP Sbjct: 923 SDITQGLPRVEELFEARKPKGLAIVSEVSGTVRIEETKKKRIVFIATESGEEVSYDIPFG 982 Query: 490 RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHNRHI 359 L V G IGA I + ++ L++++QKVYR QGV I+++H+ Sbjct: 983 SSLKVKNGETIGAGDEITEGSVNPHDIIRIKGVNAVKNYLLSEVQKVYRLQGVDINDKHL 1042 Query: 358 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGITRA 191 E++IRQ+T KV+V + G + + LPG +I + + ++E+ R LLGIT+A Sbjct: 1043 EVVIRQMTRKVKVEDSGDTEL-LPGTMIDIFDFRDENKKVEENGGRPAQARVSLLGITKA 1101 Query: 190 SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 +L T SF+S ASFQET RVL AA++G+ D L GLKENV G Sbjct: 1102 ALATDSFLSAASFQETTRVLTDAAIKGKSDPLVGLKENVTIG 1143 Score = 21.2 bits (43), Expect(2) = 4e-27 Identities = 7/19 (36%), Positives = 12/19 (63%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTG ++ Sbjct: 1137 KENVTIGKLIPAGTGMNRY 1155
>RPOC_BACHK (Q6HPR5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 120 bits (300), Expect = 5e-27 Identities = 84/222 (37%), Positives = 124/222 (55%), Gaps = 43/222 (19%) Frame = -1 Query: 601 DITQGLPKVEQIFEARS---------IDSLSPNLERRIEDWNERI------PRILGVPWG 467 DITQGLP++++IFEAR+ ID + + ++D E + R +P+G Sbjct: 948 DITQGLPRIQEIFEARNPKGQAVISEIDGVIAAIND-VKDRQEVVVQGEVEARTYAIPYG 1006 Query: 466 FLI----------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHNRHI 359 + G ELT I + L+ ++QKVYR QGV+I ++H+ Sbjct: 1007 ARLKVIPGQKISHGKELTEGSIDPKELLKVTDITAVQEYLLREVQKVYRMQGVEIGDKHV 1066 Query: 358 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRA 191 E+++RQ+ KVRVS+ G ++V LPG L+ + + A + + R +LLGIT+A Sbjct: 1067 EVMVRQMLRKVRVSDAGETDV-LPGTLLDIHQFTDANAKVLLQGKQPATARPVLLGITKA 1125 Query: 190 SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 SL T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1126 SLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIG 1167
>RPOC_BACCZ (Q63H97) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 120 bits (300), Expect = 5e-27 Identities = 84/222 (37%), Positives = 124/222 (55%), Gaps = 43/222 (19%) Frame = -1 Query: 601 DITQGLPKVEQIFEARS---------IDSLSPNLERRIEDWNERI------PRILGVPWG 467 DITQGLP++++IFEAR+ ID + + ++D E + R +P+G Sbjct: 948 DITQGLPRIQEIFEARNPKGQAVISEIDGVIAAIND-VKDRQEVVVQGEVEARTYAIPYG 1006 Query: 466 FLI----------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHNRHI 359 + G ELT I + L+ ++QKVYR QGV+I ++H+ Sbjct: 1007 ARLKVIPGQKISHGKELTEGSIDPKELLKVTDITAVQEYLLREVQKVYRMQGVEIGDKHV 1066 Query: 358 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRA 191 E+++RQ+ KVRVS+ G ++V LPG L+ + + A + + R +LLGIT+A Sbjct: 1067 EVMVRQMLRKVRVSDAGETDV-LPGTLLDIHQFTDANAKVLLQGKQPATARPVLLGITKA 1125 Query: 190 SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 SL T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1126 SLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIG 1167
>RPOC_BACCR (Q81J47) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 120 bits (300), Expect = 5e-27 Identities = 84/222 (37%), Positives = 124/222 (55%), Gaps = 43/222 (19%) Frame = -1 Query: 601 DITQGLPKVEQIFEARS---------IDSLSPNLERRIEDWNERI------PRILGVPWG 467 DITQGLP++++IFEAR+ ID + + ++D E + R +P+G Sbjct: 948 DITQGLPRIQEIFEARNPKGQAVISEIDGVIAAIND-VKDRQEVVVQGEVEARTYAIPYG 1006 Query: 466 FLI----------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHNRHI 359 + G ELT I + L+ ++QKVYR QGV+I ++H+ Sbjct: 1007 ARLKVTPGQPISHGKELTEGSIDPKELLKVTDITAVQEYLLREVQKVYRMQGVEIGDKHV 1066 Query: 358 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRA 191 E+++RQ+ KVRVS+ G ++V LPG L+ + + A + + R +LLGIT+A Sbjct: 1067 EVMVRQMLRKVRVSDAGETDV-LPGTLLDIHQFTDANAKVLLQGKQPATARPVLLGITKA 1125 Query: 190 SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 SL T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1126 SLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIG 1167
>RPOC_BACC1 (Q73FA3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 120 bits (300), Expect = 5e-27 Identities = 84/222 (37%), Positives = 124/222 (55%), Gaps = 43/222 (19%) Frame = -1 Query: 601 DITQGLPKVEQIFEARS---------IDSLSPNLERRIEDWNERI------PRILGVPWG 467 DITQGLP++++IFEAR+ ID + + ++D E + R +P+G Sbjct: 948 DITQGLPRIQEIFEARNPKGQAVISEIDGVIAAIND-VKDRQEVVVQGEVETRTYAIPYG 1006 Query: 466 FLI----------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHNRHI 359 + G ELT I + L+ ++QKVYR QGV+I ++H+ Sbjct: 1007 ARLKVIPGQQISHGKELTEGSIDPKELLKVTDITAVQEYLLREVQKVYRMQGVEIGDKHV 1066 Query: 358 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRA 191 E+++RQ+ KVRVS+ G ++V LPG L+ + + A + + R +LLGIT+A Sbjct: 1067 EVMVRQMLRKVRVSDAGETDV-LPGTLLDIHQFTDANAKVLLQGKQPATARPVLLGITKA 1125 Query: 190 SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 SL T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1126 SLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIG 1167
>RPOC_BACAN (P77819) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 120 bits (300), Expect = 5e-27 Identities = 84/222 (37%), Positives = 124/222 (55%), Gaps = 43/222 (19%) Frame = -1 Query: 601 DITQGLPKVEQIFEARS---------IDSLSPNLERRIEDWNERI------PRILGVPWG 467 DITQGLP++++IFEAR+ ID + + ++D E + R +P+G Sbjct: 948 DITQGLPRIQEIFEARNPKGQAVISEIDGVIAAIND-VKDRQEVVVQGEVEARTYAIPYG 1006 Query: 466 FLI----------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHNRHI 359 + G ELT I + L+ ++QKVYR QGV+I ++H+ Sbjct: 1007 ARLKVIPGQKISHGKELTEGSIDPKELLKVTDITAVQEYLLREVQKVYRMQGVEIGDKHV 1066 Query: 358 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRA 191 E+++RQ+ KVRVS+ G ++V LPG L+ + + A + + R +LLGIT+A Sbjct: 1067 EVMVRQMLRKVRVSDAGETDV-LPGTLLDIHQFTDANAKVLLQGKQPATARPVLLGITKA 1125 Query: 190 SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 SL T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1126 SLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIG 1167
>RPOC2_EMIHU (Q4G3A5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1267 Score = 119 bits (299), Expect(2) = 6e-27 Identities = 66/136 (48%), Positives = 91/136 (66%), Gaps = 7/136 (5%) Frame = -1 Query: 451 ELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG 272 +L+ ++ L+ +IQ+ YRSQGV I ++H+E+I++Q+TSKV + + G + FLPGE++ Sbjct: 1087 KLSFKLLQLFLIGEIQRTYRSQGVDIADKHVELIVKQMTSKVCIEDSG-TTTFLPGEVLN 1145 Query: 271 L-------LRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALR 113 L AE G Y +LLGIT+ASLN+ SFIS ASFQET RVL +AA+ Sbjct: 1146 FQKMADIALVAENKGEIPPS---YVPLLLGITKASLNSDSFISAASFQETTRVLTEAAIE 1202 Query: 112 GRIDWLKGLKENVVXG 65 GR DWL GLKENV+ G Sbjct: 1203 GRKDWLTGLKENVIIG 1218 Score = 46.2 bits (108), Expect = 1e-04 Identities = 20/51 (39%), Positives = 32/51 (62%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSI 548 L + G ++ ++ GD L T +YE +++DI QGLPKVE++ EAR + Sbjct: 949 LISAGTILHATSNNLVKAGDILATLVYETIKTTDIVQGLPKVEELLEARKV 999 Score = 21.2 bits (43), Expect(2) = 6e-27 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGF 37 K+ +G +IP GTGF Sbjct: 1212 KENVIIGRLIPAGTGF 1227
>RPOC2_ODOSI (P49468) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1481 Score = 119 bits (299), Expect = 7e-27 Identities = 86/252 (34%), Positives = 125/252 (49%), Gaps = 52/252 (20%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNL-----------ERR 518 GE + G + +EK + DI QGLP+VEQ+ EAR ++ NL Sbjct: 1206 GEFVKNGQTIGLLNFEKEITGDIVQGLPRVEQLLEARKKKQITKNLPINKKKGLLTQTTS 1265 Query: 517 IEDW------------NERI--PRILGVPWGF-----LIGAELTIAQSRISLVNKIQKVY 395 I+ + NE+I +L V + + E + + L N + Y Sbjct: 1266 IDSYFEFKKLGTSIKENEKINPHNLLKVYFNYYGLIKTFFCENSYTKDSYRLFNNYEASY 1325 Query: 394 R------------------SQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGL 269 R SQGV I ++H+E+II+Q+T+KV ++ G +++ LP E+I L Sbjct: 1326 RSFKKVQSLILNSVQSVYKSQGVSIADKHLEVIIKQMTTKVLITHQGNTSL-LPREVIDL 1384 Query: 268 LRAERAGRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRID 101 E + Y +LLGIT+A+LN SFIS ASFQET RVL KAA+ GR+D Sbjct: 1385 YHIEYINKIARIHKKHPALYVPLLLGITKAALNNPSFISAASFQETTRVLTKAAIEGRVD 1444 Query: 100 WLKGLKENVVXG 65 WL+GLKEN++ G Sbjct: 1445 WLRGLKENIIIG 1456
>RPOC_TROWT (Q820D6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1286 Score = 119 bits (298), Expect(2) = 8e-27 Identities = 88/222 (39%), Positives = 123/222 (55%), Gaps = 43/222 (19%) Frame = -1 Query: 601 DITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNERIPRIL-------GVPWGFLIG 455 DITQGLP+V+++FEAR+ + +P E IED +R R++ + L Sbjct: 1001 DITQGLPRVQELFEARTPRAAAPIAEADGTVSIED-GDRARRLILKSDNNEEFSYTVLKR 1059 Query: 454 AELTIAQ-SRISL---------------------------VNKIQKVYRSQGVQIHNRHI 359 A+L + SR+SL VN +Q+VYRSQGV IHN+HI Sbjct: 1060 AQLRVKDGSRVSLGDQLVEGSLDPKEVLRVKGIRAVQEYLVNGVQQVYRSQGVPIHNKHI 1119 Query: 358 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALD----ESIYYRAILLGITRA 191 E+I+RQ+ KV V + G +++ LPGELI R + R ++ R + GIT+A Sbjct: 1120 EVIVRQMLRKVTVVDHGDTSM-LPGELIDQSRYQELNREAQAEGRKTASARQEVTGITKA 1178 Query: 190 SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 SL T+S++S ASFQET RVL +A + GR D L GLKENV+ G Sbjct: 1179 SLATESWLSAASFQETTRVLTQAVISGRRDPLIGLKENVIIG 1220 Score = 21.2 bits (43), Expect(2) = 8e-27 Identities = 8/27 (29%), Positives = 14/27 (51%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHRSPQDK 4 K+ +G +IP GTG + P+ + Sbjct: 1214 KENVIIGNLIPAGTGLSVYRDVEPEPR 1240
>RPOC_TROW8 (Q820D9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1286 Score = 119 bits (298), Expect(2) = 8e-27 Identities = 88/222 (39%), Positives = 123/222 (55%), Gaps = 43/222 (19%) Frame = -1 Query: 601 DITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNERIPRIL-------GVPWGFLIG 455 DITQGLP+V+++FEAR+ + +P E IED +R R++ + L Sbjct: 1001 DITQGLPRVQELFEARTPRAAAPIAEADGTVSIED-GDRARRLILKSDNNEEFSYTVLKR 1059 Query: 454 AELTIAQ-SRISL---------------------------VNKIQKVYRSQGVQIHNRHI 359 A+L + SR+SL VN +Q+VYRSQGV IHN+HI Sbjct: 1060 AQLRVKDGSRVSLGDQLVEGSLDPKEVLRVKGIRAVQEYLVNGVQQVYRSQGVPIHNKHI 1119 Query: 358 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALD----ESIYYRAILLGITRA 191 E+I+RQ+ KV V + G +++ LPGELI R + R ++ R + GIT+A Sbjct: 1120 EVIVRQMLRKVTVVDHGDTSM-LPGELIDQSRYQELNREAQAEGRKTASARQEVTGITKA 1178 Query: 190 SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 SL T+S++S ASFQET RVL +A + GR D L GLKENV+ G Sbjct: 1179 SLATESWLSAASFQETTRVLTQAVISGRRDPLIGLKENVIIG 1220 Score = 21.2 bits (43), Expect(2) = 8e-27 Identities = 8/27 (29%), Positives = 14/27 (51%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHRSPQDK 4 K+ +G +IP GTG + P+ + Sbjct: 1214 KENVIIGNLIPAGTGLSVYRDVEPEPR 1240
>RPOC_BACSK (Q5WLR9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1206 Score = 119 bits (298), Expect = 9e-27 Identities = 82/220 (37%), Positives = 119/220 (54%), Gaps = 41/220 (18%) Frame = -1 Query: 601 DITQGLPKVEQIFEARSI-------------------DSLSPNLERRIEDWNERIP--RI 485 DITQGLP+++++FEAR+ D ++ +E N IP Sbjct: 948 DITQGLPRIQELFEARNPKGQAVITEIDGDVVDVRDGDKREVTVQSELETKNYSIPYGSR 1007 Query: 484 LGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHNRHIEI 353 L V G + A T+ + I L+ ++QKVYR QGV+I ++H+E+ Sbjct: 1008 LKVAVGDKVVAGQTLTEGSIDPKELLKVTGMGGVQEYLLREVQKVYRLQGVEIGDKHVEV 1067 Query: 352 IIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYY----RAILLGITRASL 185 ++RQ+ KVRV + G + + LPG L+ + R A + + S R +LLGIT+ASL Sbjct: 1068 MVRQMLRKVRVVDAGDTGI-LPGSLVEIQRFNEANKKVLLSNMRPATGRPVLLGITKASL 1126 Query: 184 NTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1127 ETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIG 1166
>RPOC2_PSEAK (Q3ZJ90) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 3462 Score = 119 bits (298), Expect = 9e-27 Identities = 80/223 (35%), Positives = 124/223 (55%), Gaps = 11/223 (4%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER 521 L +G + G+ + L+ Y+ ++ DI QG+PK+EQ+FEAR Sbjct: 3226 LLASGGICDLVQGDFVKNQSPLLNLKYKSLKTEDIVQGIPKIEQLFEAR----------- 3274 Query: 520 RIEDWNERIPRILGVPWGFLIGAELTIAQSRIS---------LVNKIQKVYRSQGVQIHN 368 E++ + + + FL+ L + + +++ IQ VY+SQGV I + Sbjct: 3275 --ENFQDELGINNLLKNKFLVYKTLYHPKEAVRKSFEFIQHYIIDGIQYVYQSQGVNISD 3332 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL--DESIYYRAILLGITR 194 +HIEII++Q+TSKVR+ E S + L G+++ L ER + + Y I+LGIT+ Sbjct: 3333 KHIEIIVKQMTSKVRILEPRNSGL-LRGDVVDLDWIERINLDILTGKKAQYEPIVLGITK 3391 Query: 193 ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 ASL+ + FIS ASFQET +VL KA + R D+L+GLKENV+ G Sbjct: 3392 ASLDRRGFISAASFQETIKVLTKATILQRRDYLRGLKENVILG 3434
>RPOC_NEIG1 (Q5F5R6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1391 Score = 119 bits (297), Expect = 1e-26 Identities = 88/251 (35%), Positives = 130/251 (51%), Gaps = 43/251 (17%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------SIDSLSPNL 527 GA + G+ + KGD L S++ DIT GLP+V ++FEAR + ++ + Sbjct: 1108 GAVITVREGQEIGKGDVLARIPQASSKTRDITGGLPRVAELFEARVPKDAGMLAEITGTV 1167 Query: 526 ERRIEDWNER---IPRILGVPWGFLIGAEL--------------TIAQSRIS-------- 422 E ++ I + GV + LI E TI + Sbjct: 1168 SFGKETKGKQRLIITDVDGVAYETLISKEKQILVHDGQVVNRGETIVDGAVDPHDILRLQ 1227 Query: 421 --------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG-- 272 +V ++Q+VYR QGV+I ++HIE+IIRQ+ +V +++ G + F+ GE + Sbjct: 1228 GIEALARYIVQEVQEVYRLQGVKISDKHIEVIIRQMLRRVNIADAGETG-FITGEQVERG 1286 Query: 271 --LLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW 98 + E+A E Y ILLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D Sbjct: 1287 DVMAANEKALEEGKEPARYENILLGITKASLSTDSFISAASFQETTRVLTEAAIMGKQDE 1346 Query: 97 LKGLKENVVXG 65 L+GLKENV+ G Sbjct: 1347 LRGLKENVIVG 1357
>RPOC_STRCO (Q8CJT1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1299 Score = 119 bits (297), Expect(2) = 1e-26 Identities = 83/222 (37%), Positives = 122/222 (54%), Gaps = 43/222 (19%) Frame = -1 Query: 601 DITQGLPKVEQIFEARSIDSLSPNLER----RIEDW---------------------NER 497 DITQGLP+V ++FEAR+ ++P E RIE+ ++R Sbjct: 1018 DITQGLPRVVELFEARTPKGVAPISEASGRVRIEETEKTKKIVVTPDDGSDETAFPISKR 1077 Query: 496 IPRILGVPWGFLIGAELTIAQS--------------RISLVNKIQKVYRSQGVQIHNRHI 359 ++G +G +LT+ + ++ LV ++QKVY SQGV IH++HI Sbjct: 1078 ARLLVGEGDHVEVGQKLTVGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKHI 1137 Query: 358 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYY----RAILLGITRA 191 EIIIRQ+ +V + E G + + LPGEL+ + E R + + + R L+GIT+A Sbjct: 1138 EIIIRQMLRRVTIIESGDAEL-LPGELVERTKFETENRRVVQEGGHPASGRPQLMGITKA 1196 Query: 190 SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 SL T+S++S ASFQET RVL AA+ + D L GLKENV+ G Sbjct: 1197 SLATESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIG 1238 Score = 20.8 bits (42), Expect(2) = 1e-26 Identities = 7/19 (36%), Positives = 12/19 (63%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTG ++ Sbjct: 1232 KENVIIGKLIPAGTGLSRY 1250
>RPOC_PSEPK (Q88QP1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 118 bits (296), Expect = 2e-26 Identities = 91/238 (38%), Positives = 126/238 (52%), Gaps = 44/238 (18%) Frame = -1 Query: 646 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 515 GD + E S++ DIT GLP+V +FEAR S E RR+ Sbjct: 1118 GDVIARIPQETSKTRDITGGLPRVADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVI 1177 Query: 514 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 407 E + E IP R L V G + I+ +VN+I Sbjct: 1178 TPTDGSEPYEELIPKWRHLNVFEGEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEI 1237 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA--ERAGRALDE 233 Q VYR QGV+I+++HIE I+RQ+ KV +SE G S+ F+ G+ + L + E A ++ Sbjct: 1238 QDVYRLQGVKINDKHIETILRQMLRKVEISESGDSS-FIKGDQMELTQVLVENERLASED 1296 Query: 232 SIY--YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 + +LLGIT+ASL+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENVV G Sbjct: 1297 KFISKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVG 1354
>RPOC_COLP3 (Q47UW0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 118 bits (296), Expect = 2e-26 Identities = 88/250 (35%), Positives = 129/250 (51%), Gaps = 43/250 (17%) Frame = -1 Query: 685 ATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------------IDS 542 A VN G + GD L S++ DIT GLP+V +FEAR + + Sbjct: 1105 AIVNLEDGADVGVGDALARIPQASSKTRDITGGLPRVADLFEARKPKLPAILAEKTGVVA 1164 Query: 541 LSPNLERRI---------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS--------- 422 + ++ E + E IP R+L + G + IA S Sbjct: 1165 FGKETKGKVRLLITQPSGEVYEEMIPKTRLLNIYEGEPVIKGEVIADGPESPHDILRLRG 1224 Query: 421 -------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLR 263 +VN++Q+VYR QGV+I+++HIE+I+RQ+ K + + G S FL GE + + R Sbjct: 1225 VAPVANYIVNEVQEVYRLQGVKINDKHIEVIVRQMIRKCEILDAGDST-FLKGEQVEVAR 1283 Query: 262 AERAGRALD----ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWL 95 + R L+ + Y ++GIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L Sbjct: 1284 VNISNRELEAEGKQPAEYEMQMMGITKASLATESFISAASFQETTRVLTEAAVAGKKDGL 1343 Query: 94 KGLKENVVXG 65 +GLKENV+ G Sbjct: 1344 RGLKENVIVG 1353
>RPOC_SHEON (Q8EK73) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 118 bits (296), Expect = 2e-26 Identities = 92/238 (38%), Positives = 126/238 (52%), Gaps = 44/238 (18%) Frame = -1 Query: 646 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL--------ERRI-- 515 GD L E S++ DIT GLP+V +FEAR + +S + +RR+ Sbjct: 1118 GDALARIPQESSKTRDITGGLPRVADLFEARKPKEPAILAEISGTISFGKETKGKRRLVI 1177 Query: 514 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 407 E + E IP R L V G + IA + +VN++ Sbjct: 1178 TPADGGEQYEEMIPKWRNLNVFEGEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEV 1237 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES- 230 Q VYR QGV+I+++HIE+IIRQ+ K ++ G S FL GE + + R + A R L E Sbjct: 1238 QDVYRLQGVKINDKHIEVIIRQMLRKCVITAAGDSE-FLEGEQVEVSRVKIANRELVEQG 1296 Query: 229 ---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1297 KVPATFERELLGITKASLATESFISAASFQETTRVLTEAAVGGKSDNLRGLKENVIVG 1354
>RPOC_BACHD (Q9Z9M1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1206 Score = 118 bits (295), Expect = 2e-26 Identities = 78/220 (35%), Positives = 119/220 (54%), Gaps = 41/220 (18%) Frame = -1 Query: 601 DITQGLPKVEQIFEARS-------------IDSLSPNLERRIEDWNERIPRILGVPWGFL 461 DITQGLP+++++FEAR+ + +++ +R I E + +P+G Sbjct: 948 DITQGLPRIQELFEARNPKGQAVITEIEGEVTNINEADKREITVKGEMETKTYSIPYGAR 1007 Query: 460 IGAEL--------TIAQSRIS----------------LVNKIQKVYRSQGVQIHNRHIEI 353 I EL ++ + I L+ ++QKVYR QGV+I ++H+E+ Sbjct: 1008 IKVELGEQVVPGQSLTEGSIDPKELLKVQGMTGVQEYLLREVQKVYRMQGVEIGDKHVEV 1067 Query: 352 IIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRASL 185 ++RQ+ K+RV + G + V LPG LI + + + R +LLGIT+ASL Sbjct: 1068 MVRQMLRKIRVIDAGDTEV-LPGSLIEIQHFNDENKKVLLSGKRPATGRPVLLGITKASL 1126 Query: 184 NTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1127 ETDSFLSAASFQETTRVLTDAAIKGKRDELVGLKENVIIG 1166
>RPOC_NEIMB (Q9K1J1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1391 Score = 118 bits (295), Expect = 2e-26 Identities = 86/251 (34%), Positives = 130/251 (51%), Gaps = 43/251 (17%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------SIDSLSPNL 527 GA + G+ + KGD L S++ DIT GLP+V ++FEAR + ++ + Sbjct: 1108 GAVITVREGQEIGKGDVLARIPQASSKTRDITGGLPRVAELFEARVPKDAGMLAEITGTV 1167 Query: 526 ERRIEDWNER---IPRILGVPWGFLIGAEL--------------TIAQSRIS-------- 422 E ++ + + GV + LI E TI + Sbjct: 1168 SFGKETKGKQRLIVTDVDGVAYETLISKEKQILVHDGQVVNRGETIVDGAVDPHDILRLQ 1227 Query: 421 --------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG-- 272 +V ++Q+VYR QGV+I ++HIE+IIRQ+ +V +++ G + F+ GE + Sbjct: 1228 GIEALARYIVQEVQEVYRLQGVKISDKHIEVIIRQMLRRVNIADAGETG-FITGEQVERG 1286 Query: 271 --LLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW 98 + E+A E Y +LLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D Sbjct: 1287 DVMAANEKALEEGKEPARYENVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKQDE 1346 Query: 97 LKGLKENVVXG 65 L+GLKENV+ G Sbjct: 1347 LRGLKENVIVG 1357
>RPOC_NEIMA (Q9JX03) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1391 Score = 118 bits (295), Expect = 2e-26 Identities = 86/251 (34%), Positives = 130/251 (51%), Gaps = 43/251 (17%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------SIDSLSPNL 527 GA + G+ + KGD L S++ DIT GLP+V ++FEAR + ++ + Sbjct: 1108 GAVITVREGQEIGKGDVLARIPQASSKTRDITGGLPRVAELFEARVPKDAGMLAEITGTV 1167 Query: 526 ERRIEDWNER---IPRILGVPWGFLIGAEL--------------TIAQSRIS-------- 422 E ++ + + GV + LI E TI + Sbjct: 1168 SFGKETKGKQRLIVTDVDGVAYETLISKEKQILVHDGQVVNRGETIVDGAVDPHDILRLQ 1227 Query: 421 --------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG-- 272 +V ++Q+VYR QGV+I ++HIE+IIRQ+ +V +++ G + F+ GE + Sbjct: 1228 GIEALARYIVQEVQEVYRLQGVKISDKHIEVIIRQMLRRVNIADAGETG-FITGEQVERG 1286 Query: 271 --LLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW 98 + E+A E Y +LLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D Sbjct: 1287 DVMAANEKALEEGKEPARYENVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKQDE 1346 Query: 97 LKGLKENVVXG 65 L+GLKENV+ G Sbjct: 1347 LRGLKENVIVG 1357
>RPOC_STRAW (Q82DQ4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1299 Score = 118 bits (295), Expect(2) = 2e-26 Identities = 84/223 (37%), Positives = 122/223 (54%), Gaps = 44/223 (19%) Frame = -1 Query: 601 DITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNERIPRILGVPWG----------- 467 DITQGLP+V ++FEAR+ ++P E RIE+ E+ +I+ P Sbjct: 1018 DITQGLPRVVELFEARTPKGVAPISEASGRVRIEE-TEKTKKIVVTPDDGSDETAFPISK 1076 Query: 466 -----------FLIGAELTIAQS--------------RISLVNKIQKVYRSQGVQIHNRH 362 +G +LT+ + ++ LV ++QKVY SQGV IH++H Sbjct: 1077 RARVLVTEGEHVEVGQKLTVGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKH 1136 Query: 361 IEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYY----RAILLGITR 194 IEIIIRQ+ +V + E G + + LPGEL+ + E R + + + R L+GIT+ Sbjct: 1137 IEIIIRQMLRRVTIIESGDAEL-LPGELVERSKFETENRRVVQEGGHPASGRPQLMGITK 1195 Query: 193 ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 ASL T+S++S ASFQET RVL AA+ + D L GLKENV+ G Sbjct: 1196 ASLATESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIG 1238 Score = 20.8 bits (42), Expect(2) = 2e-26 Identities = 7/19 (36%), Positives = 12/19 (63%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTG ++ Sbjct: 1232 KENVIIGKLIPAGTGLSRY 1250
>RPOC_PSEPF (Q3K5Y2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 117 bits (294), Expect = 3e-26 Identities = 92/238 (38%), Positives = 126/238 (52%), Gaps = 44/238 (18%) Frame = -1 Query: 646 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 515 GD + E S++ DIT GLP+V +FEAR S E RR+ Sbjct: 1118 GDVIARIPQETSKTRDITGGLPRVADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVI 1177 Query: 514 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 407 + + E IP R L V G + I+ +VN+I Sbjct: 1178 TPNDGSDPYEELIPKWRHLNVFEGEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEI 1237 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPG---ELIGLLRAERAGRALD 236 Q VYR QGV+I+++HIE I+RQ+ KV +SE G S+ F+ G EL +L A D Sbjct: 1238 QDVYRLQGVKINDKHIETILRQMLRKVEISESGDSS-FIKGDQMELTHVLVENERLNAED 1296 Query: 235 ESIY-YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 + + + +LLGIT+ASL+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENVV G Sbjct: 1297 KFVSKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVG 1354
>RPOC_PSESM (Q889X7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 117 bits (293), Expect = 4e-26 Identities = 90/238 (37%), Positives = 124/238 (52%), Gaps = 44/238 (18%) Frame = -1 Query: 646 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 515 GD + E S++ DIT GLP+V +FEAR S E RR+ Sbjct: 1118 GDVIARIPQETSKTRDITGGLPRVADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVI 1177 Query: 514 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 407 + + E IP R L V G + I+ +VN+I Sbjct: 1178 TPNDGSDPYEELIPKWRHLNVFEGEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEI 1237 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA----ERAGRAL 239 Q VYR QGV+I+++HIE I+RQ+ KV ++E G S+ F+ G+ + L ER G Sbjct: 1238 QDVYRLQGVKINDKHIETILRQMLRKVEIAESGDSS-FIKGDQMELTHVLVENERLGADD 1296 Query: 238 DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 + +LLGIT+ASL+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENVV G Sbjct: 1297 KFVSKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVG 1354
>RPOC_THEFY (Q47LI6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1291 Score = 117 bits (293), Expect = 4e-26 Identities = 85/233 (36%), Positives = 126/233 (54%), Gaps = 44/233 (18%) Frame = -1 Query: 631 TFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNERIPRILGVPWG- 467 TF + DIT GLP+V+++FEAR ++P E RIE+ ++ +I+ VP Sbjct: 1000 TFHMGGTAGQDITHGLPRVQELFEARVPKGVAPISEVEGRVRIEE-TDKSRKIIVVPDDG 1058 Query: 466 -------------FLI--GAELTIAQSRIS--------------------LVNKIQKVYR 392 L+ G + + Q + LV+++Q+VY+ Sbjct: 1059 SDEVSYQVPMRAPLLVQDGQRVEVGQQLVQGTVNPHEILRILGPRAVQQHLVSEVQEVYK 1118 Query: 391 SQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIY 224 SQGV IH++HIEII+RQ+ +V V E G + + LPGE+I + E R + + Sbjct: 1119 SQGVSIHDKHIEIIVRQMLKRVNVLESGDTKL-LPGEMIERPKFEEINRRVVAEGGQPAS 1177 Query: 223 YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 R +LLGIT+ASL T+S++S ASFQET RVL + A+ G+ D L GLKENV+ G Sbjct: 1178 ARPVLLGITKASLATESWLSAASFQETTRVLTENAIHGKSDPLLGLKENVIIG 1230
>RPOC_ACIAD (Q6FF89) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1397 Score = 117 bits (293), Expect(2) = 4e-26 Identities = 95/262 (36%), Positives = 133/262 (50%), Gaps = 44/262 (16%) Frame = -1 Query: 718 EQLNLILATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR----- 554 EQ + T TV GE + GD L E SR+ DIT GLP+V +FEAR Sbjct: 1092 EQFYFLPQNTIVTVRD--GETIGVGDVLGRVPQETSRTRDITGGLPRVADLFEARKPKEH 1149 Query: 553 ----------SIDSLSPNLERRI-------EDWNERIP--RILGVPWGFLIGAELTIAQS 431 S + R + E + E IP R + V G + TI+ Sbjct: 1150 AILAEVSGIVSFGKETKGKNRLVITPDDGSEIYEELIPKWRTINVFEGEHVNRGETISDG 1209 Query: 430 RIS----------------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSN 299 + +VN++Q VYR QGV+I+++HIE+I+RQ+ KV ++ DG Sbjct: 1210 PQNPHDILRLKGEVALTNYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKVDIT-DGGDT 1268 Query: 298 VFLPGELIGLLRAERAGRALDESIYYRAI----LLGITRASLNTQSFISEASFQETARVL 131 F+ GE + +R + +A+ + A L+GIT+ASL+T SFIS ASFQET RVL Sbjct: 1269 SFIKGEQVDYIRVVQENQAVLAQNKFPAKFERQLMGITKASLSTDSFISAASFQETTRVL 1328 Query: 130 AKAALRGRIDWLKGLKENVVXG 65 +AA+ G+ D L+GLKENVV G Sbjct: 1329 TEAAVTGKEDDLRGLKENVVVG 1350 Score = 20.8 bits (42), Expect(2) = 4e-26 Identities = 9/26 (34%), Positives = 14/26 (53%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHRSPQD 7 K+ +G +IP GTG + R Q+ Sbjct: 1344 KENVVVGRLIPAGTGLAYHLERRRQE 1369
>RPOC_BRUSU (Q8G070) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 117 bits (292), Expect = 5e-26 Identities = 86/242 (35%), Positives = 124/242 (51%), Gaps = 48/242 (19%) Frame = -1 Query: 646 GDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------SIDS---------------L 539 GD + E +++ DIT GLP+V ++FEAR ID + Sbjct: 1112 GDVIARLPMESAKTKDITGGLPRVAELFEARRPKDHAIIAEIDGTVRFGRDYKNKRRIII 1171 Query: 538 SPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRIS--------------------L 419 PN + IE IP+ G P+ G + + + L Sbjct: 1172 EPN-DDTIEPVEYLIPK--GKPFHLQDGDVIEKGEYILDGNPAPHDILAIKGVEALASYL 1228 Query: 418 VNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL 239 VN+IQ+VYR QGV I+++HIE+I+RQ+ KV ++E G + ++PG+ + + E L Sbjct: 1229 VNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEITESGDTG-YIPGDHVDRIELEEINERL 1287 Query: 238 DESIYY----RAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 71 E +LLGIT+ASL T SFIS ASFQET RVL +AA+ G++D L+GLKENV+ Sbjct: 1288 IEEGKKPGSGNPVLLGITKASLQTPSFISAASFQETTRVLTEAAVAGKMDTLQGLKENVI 1347 Query: 70 XG 65 G Sbjct: 1348 VG 1349
>RPOC_BRUME (Q8YHP7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 117 bits (292), Expect = 5e-26 Identities = 86/242 (35%), Positives = 124/242 (51%), Gaps = 48/242 (19%) Frame = -1 Query: 646 GDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------SIDS---------------L 539 GD + E +++ DIT GLP+V ++FEAR ID + Sbjct: 1112 GDVIARLPMESAKTKDITGGLPRVAELFEARRPKDHAIIAEIDGTVRFGRDYKNKRRIII 1171 Query: 538 SPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRIS--------------------L 419 PN + IE IP+ G P+ G + + + L Sbjct: 1172 EPN-DDTIEPVEYLIPK--GKPFHLQDGDVIEKGEYILDGNPAPHDILAIKGVEALASYL 1228 Query: 418 VNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL 239 VN+IQ+VYR QGV I+++HIE+I+RQ+ KV ++E G + ++PG+ + + E L Sbjct: 1229 VNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEITESGDTG-YIPGDHVDRIELEEINERL 1287 Query: 238 DESIYY----RAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 71 E +LLGIT+ASL T SFIS ASFQET RVL +AA+ G++D L+GLKENV+ Sbjct: 1288 IEEGKKPGSGNPVLLGITKASLQTPSFISAASFQETTRVLTEAAVAGKMDTLQGLKENVI 1347 Query: 70 XG 65 G Sbjct: 1348 VG 1349
>RPOC_BRUAB (Q57CP9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 117 bits (292), Expect = 5e-26 Identities = 86/242 (35%), Positives = 124/242 (51%), Gaps = 48/242 (19%) Frame = -1 Query: 646 GDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------SIDS---------------L 539 GD + E +++ DIT GLP+V ++FEAR ID + Sbjct: 1112 GDVIARLPMESAKTKDITGGLPRVAELFEARRPKDHAIIAEIDGTVRFGRDYKNKRRIII 1171 Query: 538 SPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRIS--------------------L 419 PN + IE IP+ G P+ G + + + L Sbjct: 1172 EPN-DDTIEPVEYLIPK--GKPFHLQDGDVIEKGEYILDGNPAPHDILAIKGVEALASYL 1228 Query: 418 VNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL 239 VN+IQ+VYR QGV I+++HIE+I+RQ+ KV ++E G + ++PG+ + + E L Sbjct: 1229 VNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEITESGDTG-YIPGDHVDRIELEEINERL 1287 Query: 238 DESIYY----RAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 71 E +LLGIT+ASL T SFIS ASFQET RVL +AA+ G++D L+GLKENV+ Sbjct: 1288 IEEGKKPGSGNPVLLGITKASLQTPSFISAASFQETTRVLTEAAVAGKMDTLQGLKENVI 1347 Query: 70 XG 65 G Sbjct: 1348 VG 1349
>RPOC_SHEVI (Q9KW13) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1409 Score = 117 bits (292), Expect = 5e-26 Identities = 95/251 (37%), Positives = 132/251 (52%), Gaps = 44/251 (17%) Frame = -1 Query: 685 ATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL- 527 A VN + GD L E S++ DIT GLP+V +FEAR + S + Sbjct: 1106 AIVNQDDNAEINVGDALARIPQESSKTRDITGGLPRVADLFEARKPKEPAILAEYSGTIS 1165 Query: 526 -------ERRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS 422 +RR+ + + E IP R L V G + GAE R+ Sbjct: 1166 FGKETKGKRRLLITPADGGKPYEEMIPKWRNLNVFEGEKVERGEVIADGAEAAHDILRLR 1225 Query: 421 --------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLL 266 +VN++Q VYR QGV+I+++HIE+IIRQ+ K +++ G S FL GE + Sbjct: 1226 GIHKVANYIVNEVQDVYRLQGVKINDKHIEVIIRQMLRKCLITDAGDSQ-FLAGEQAEVA 1284 Query: 265 RAERAGRALD----ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW 98 R + A R L+ + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D Sbjct: 1285 RVKIANRELEAQGKKPATFDRELLGITKASLATESFISAASFQETTRVLTEAAVGGKSDK 1344 Query: 97 LKGLKENVVXG 65 L+GLKENV+ G Sbjct: 1345 LRGLKENVIVG 1355
>RPOC_ANAMM (Q5PBG3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1415 Score = 117 bits (292), Expect(2) = 5e-26 Identities = 87/254 (34%), Positives = 125/254 (49%), Gaps = 46/254 (18%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEA---------------- 557 GA +N G+ ++ GD + E ++ DIT GLP+V ++FEA Sbjct: 1093 GAVLNVQDGQKVHAGDVITRIPRESIKTRDITGGLPRVIELFEARRPKEHAIVSDVDGYV 1152 Query: 556 ---------------RSIDSLSPNLERRIEDWNERIPR-----------ILGVPWGFLIG 455 R +D P +E + I + G P I Sbjct: 1153 EFGKDYYRSKRRIFIRPVDKSLPAVEYLVPKGKHTIVNEGDFVHKGDLLMDGDPDQHDIL 1212 Query: 454 AELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 275 L ++++IQ+VYR QGV+I N+HIE+I+RQ+ KV +++ G ++L GE Sbjct: 1213 RVLGAEALASYMISEIQQVYRLQGVRIDNKHIEVILRQMLQKVEITDPG-DTMYLVGEHA 1271 Query: 274 GLLRAERAGRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGR 107 G R R L+E+ + Y IL GIT+ASL+T SFIS ASFQET +VL +AA G+ Sbjct: 1272 GREEVMRLNRKLEEAGKKPVAYVPILQGITKASLDTNSFISAASFQETTKVLTEAAFSGK 1331 Query: 106 IDWLKGLKENVVXG 65 D L GLKENV+ G Sbjct: 1332 EDPLYGLKENVIVG 1345 Score = 20.8 bits (42), Expect(2) = 5e-26 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGF 37 K+ +G +IP GTGF Sbjct: 1339 KENVIVGRLIPAGTGF 1354
>RPOC_PHOLL (Q7N9A3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 116 bits (291), Expect = 6e-26 Identities = 90/244 (36%), Positives = 125/244 (51%), Gaps = 44/244 (18%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 524 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVSISAGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEVSGIVSFGKETKG 1171 Query: 523 -RRI--------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS--------------- 422 RR+ + + E IP R L V G ++ I+ S Sbjct: 1172 KRRLVISPLDGGDAYEEMIPKWRQLNVFEGEVVERGDVISDGPESPHDILRLRGVHAVTR 1231 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 + N++Q+VYR QGV+I+++HIE+I+RQ+ K + G S FL GE + R + A R Sbjct: 1232 YITNEVQEVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSE-FLEGEQVEYARVKVANR 1290 Query: 244 ALDE----SIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 L++ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKEN Sbjct: 1291 KLEQEGKVAATYGRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 Query: 76 VVXG 65 V+ G Sbjct: 1351 VIVG 1354
>RPOC_PSEHT (Q3ILP8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1390 Score = 115 bits (289), Expect(2) = 6e-26 Identities = 90/243 (37%), Positives = 123/243 (50%), Gaps = 43/243 (17%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------------SIDSLSPN 530 G + GD L E S++ DIT GLP+V +FEAR S + Sbjct: 1098 GTTVNPGDVLARIPQEGSKTRDITGGLPRVADLFEARKPKEPAILAEVTGTISFGKETKG 1157 Query: 529 LERRI------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS---------------- 422 +R + + + E IP R L V G + IA S Sbjct: 1158 KKRLVITPDEGDHYEEMIPKWRQLNVFEGERVSKGEVIADGPESPHDILRLRGVTHVANY 1217 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 +VN++Q+VYR QGV+I+++HIE IIRQ+ K + G ++ FL GE I + R A R Sbjct: 1218 IVNEVQEVYRLQGVKINDKHIETIIRQMLRKCTIMHGGDTD-FLAGEQIEVARVNIANRD 1276 Query: 241 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 L+ + L+GIT+ASL T+SFIS ASFQET RVL AA+ G+ D L+GLKENV Sbjct: 1277 LEAQGKIPAKFEIQLMGITKASLATESFISAASFQETTRVLTDAAVNGKSDELRGLKENV 1336 Query: 73 VXG 65 + G Sbjct: 1337 IVG 1339 Score = 21.6 bits (44), Expect(2) = 6e-26 Identities = 10/27 (37%), Positives = 14/27 (51%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHRSPQDK 4 K+ +G +IP GTGF R + K Sbjct: 1333 KENVIVGRLIPAGTGFSYHQERMARRK 1359
>RPOC_BLOPB (Q492C0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1416 Score = 116 bits (290), Expect = 8e-26 Identities = 93/244 (38%), Positives = 129/244 (52%), Gaps = 44/244 (18%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL-------- 527 G + GD L +E S + DIT GLP+V +FEAR + +S + Sbjct: 1116 GSRIICGDILARLPHESSGTKDITGGLPRVADLFEARRPKESAILAEISGTISFGKETKG 1175 Query: 526 ERR-----IED---WNERIP--RILGVPWGFLIGAELTIAQSRIS--------------- 422 +RR IED + E IP R L V G + I+ S Sbjct: 1176 KRRLMISPIEDGDVYEEMIPKWRHLNVFEGEYVDRGDIISDGPESPHDILRLRGVHAVTR 1235 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 +VN++Q VYR QGV+I+++HIE+I+RQ+ K V G S+ FL GE + R + A R Sbjct: 1236 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATVIRSGSSD-FLVGEQVEYSRIKIANR 1294 Query: 244 ALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 L+ I + LLGIT+ASL T+SFIS ASFQET RVL ++++ G+ D L+GLKEN Sbjct: 1295 KLENEGKVKISFIRNLLGITKASLATESFISAASFQETTRVLTESSVAGKRDELRGLKEN 1354 Query: 76 VVXG 65 V+ G Sbjct: 1355 VIVG 1358
>RPOC_PSEF5 (Q4K527) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 115 bits (289), Expect = 1e-25 Identities = 89/238 (37%), Positives = 123/238 (51%), Gaps = 44/238 (18%) Frame = -1 Query: 646 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 515 GD + E S++ DIT GLP+V +FEAR S E RR+ Sbjct: 1118 GDVIARIPQETSKTRDITGGLPRVADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVI 1177 Query: 514 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 407 + + E IP R L V G + I+ +VN+I Sbjct: 1178 TPNDGSDPYEELIPKWRHLNVFEGEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEI 1237 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA----ERAGRAL 239 Q VYR QGV+I+++HIE I+RQ+ KV ++E G S+ F+ G+ + L ER Sbjct: 1238 QDVYRLQGVKINDKHIETILRQMLRKVEIAESGDSS-FIKGDQMELTHVLVENERLSTED 1296 Query: 238 DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 + +LLGIT+ASL+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENVV G Sbjct: 1297 KFVAKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVG 1354
>RPOC_DEIRA (Q9RVW0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1546 Score = 115 bits (289), Expect = 1e-25 Identities = 80/223 (35%), Positives = 122/223 (54%), Gaps = 44/223 (19%) Frame = -1 Query: 601 DITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNER-------------------IP 491 DIT GLP+V ++FEAR + + +R RIE+ ER +P Sbjct: 1268 DITMGLPRVIELFEARKPKTQAVVADRDGVIRIEEEEERYLVRIEADDEQYSSKTATKVP 1327 Query: 490 RILG--VPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHNR 365 R+L V G + A I + ++ LV ++Q+VYRSQGV++H++ Sbjct: 1328 RVLRMTVKDGERVEAGQPITRGAVNPHDLLMYKDTDAAQRYLVEEVQRVYRSQGVKVHDK 1387 Query: 364 HIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES---IYYRAILLGITR 194 HIE+I+RQ+ V V+ DG L G+ + ++A AL E ++ +LLGIT+ Sbjct: 1388 HIEVIVRQMLRWVEVT-DGGDTTLLEGQTVEHWEVDQANEALAEGQTPASWKPVLLGITK 1446 Query: 193 ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 +SL T+S++S ASFQ T VL +A++RG++D L GLKENV+ G Sbjct: 1447 SSLTTKSWLSAASFQHTTHVLTEASMRGQVDDLIGLKENVILG 1489
>RPOC_LISMO (Q8YA96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1201 Score = 115 bits (289), Expect = 1e-25 Identities = 78/222 (35%), Positives = 118/222 (53%), Gaps = 43/222 (19%) Frame = -1 Query: 601 DITQGLPKVEQIFEARS-------------IDSLSPNLERRIE----------DWNERIP 491 DITQGLP++++IFEAR+ + S+ +R+ E +N Sbjct: 948 DITQGLPRIQEIFEARNPKGQAIITEVGGEVVSIEEGRDRQQEITIQGTDDRRSYNIPYT 1007 Query: 490 RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHNRHI 359 L V G ++ + + + L+ ++QKVYR QGV+I ++H+ Sbjct: 1008 ARLRVEEGTIVERGEALTEGSVDPKALIRVRDVLSVQEYLLAEVQKVYRMQGVEIGDKHV 1067 Query: 358 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRA 191 E+++RQ+ K+RV + G +N+ LPG L+ + A R + R +LLGIT+A Sbjct: 1068 EVMVRQMLRKIRVMDTGDTNI-LPGTLMDIHTFTEANREAILSGSQPATGRPVLLGITKA 1126 Query: 190 SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 SL T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1127 SLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVILG 1168
>RPOC_OCEIH (Q8ETY7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 115 bits (288), Expect = 1e-25 Identities = 80/221 (36%), Positives = 120/221 (54%), Gaps = 42/221 (19%) Frame = -1 Query: 601 DITQGLPKVEQIFEARSIDSLSPNLE--------RRIEDWNERI------PRILGVPWGF 464 DITQGLP+++++FEAR+ + E + ++D E + R VP+ Sbjct: 948 DITQGLPRIQELFEARNPKGQAVITEIDGTVLEFKEVKDKQEIVVQGEVEQRSYAVPYNA 1007 Query: 463 LI----------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHNRHIE 356 + G ELT + + L+ ++Q+VYR QGV+I ++H+E Sbjct: 1008 RMKVSIGDTVEAGQELTEGSVDPKELLQIKGVEGVQDYLLKEVQRVYRMQGVEIGDKHVE 1067 Query: 355 IIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRAS 188 +++RQ+ K+RV G + V LPG L+ L + + A + E R +LLGIT+AS Sbjct: 1068 VMVRQMLRKIRVVSSGDTEV-LPGSLLELHQFKEANHKVLMEEGEPATGRPVLLGITKAS 1126 Query: 187 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 L T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1127 LETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIG 1167
>RPOC_GLUOX (Q5FTX8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1439 Score = 115 bits (288), Expect = 1e-25 Identities = 93/259 (35%), Positives = 129/259 (49%), Gaps = 44/259 (16%) Frame = -1 Query: 709 NLILATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR--SIDSLS 536 +++ GA VN GD L E S++ DIT GLP+V ++FEAR ++ Sbjct: 1151 SILSVENGAEVNA--------GDVLARIPREGSKTRDITGGLPRVAELFEARRPKDHAII 1202 Query: 535 PNLERRIE---DWNERIPRIL-----GVPWGFLI--GAELTIAQSRIS------------ 422 E RIE D+ + I+ G +LI G +++ + Sbjct: 1203 AEGEGRIEFGKDYKSKRCVIVKNDDTGEETQYLIPKGKHVSVQEGDFVQKGDPLVDGPRV 1262 Query: 421 ----------------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFL 290 LVN+IQ VYR QGV+I+++HIE+I+RQ+ KV + E G S +L Sbjct: 1263 PHDILKVMGVEALSDYLVNEIQDVYRLQGVKINDKHIEVIVRQMLQKVEILEPGDST-YL 1321 Query: 289 PGELIGLLRAERAGRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKA 122 GE + + E + L D +L GIT+ASL TQSFIS ASFQET RVL A Sbjct: 1322 IGETVDRIEYEGENQRLMENGDTPAKAMPVLQGITKASLQTQSFISAASFQETTRVLTDA 1381 Query: 121 ALRGRIDWLKGLKENVVXG 65 A G++D L GLKENV+ G Sbjct: 1382 ATSGKVDTLNGLKENVIVG 1400
>RPOC_PSEU2 (Q4ZMN8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 115 bits (288), Expect = 1e-25 Identities = 89/238 (37%), Positives = 123/238 (51%), Gaps = 44/238 (18%) Frame = -1 Query: 646 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 515 GD + E S++ DIT GLP+V +FEAR S E RR+ Sbjct: 1118 GDVIARIPQETSKTRDITGGLPRVADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVI 1177 Query: 514 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 407 + + E IP R L V G + I+ +VN+I Sbjct: 1178 TPNDGSDPYEELIPKWRHLNVFEGEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEI 1237 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA----ERAGRAL 239 Q VYR QGV+I+++HIE I+RQ+ KV ++E G S+ F+ G+ + L ER Sbjct: 1238 QDVYRLQGVKINDKHIETILRQMLRKVEIAESGDSS-FIKGDQMELTHVLVENERLSTED 1296 Query: 238 DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 + +LLGIT+ASL+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENVV G Sbjct: 1297 KFVSKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVG 1354
>RPOC_PSE14 (Q48D30) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 115 bits (288), Expect = 1e-25 Identities = 89/238 (37%), Positives = 123/238 (51%), Gaps = 44/238 (18%) Frame = -1 Query: 646 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 515 GD + E S++ DIT GLP+V +FEAR S E RR+ Sbjct: 1118 GDVIARIPQETSKTRDITGGLPRVADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVI 1177 Query: 514 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 407 + + E IP R L V G + I+ +VN+I Sbjct: 1178 TPNDGSDPYEELIPKWRHLNVFEGEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEI 1237 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA----ERAGRAL 239 Q VYR QGV+I+++HIE I+RQ+ KV ++E G S+ F+ G+ + L ER Sbjct: 1238 QDVYRLQGVKINDKHIETILRQMLRKVEIAESGDSS-FIKGDQMELTHVLVENERLSTED 1296 Query: 238 DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 + +LLGIT+ASL+T+SFIS ASFQET RVL +AA+ G+ D+L+GLKENVV G Sbjct: 1297 KFVSKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVG 1354
>RPOC_NITOC (Q3J8Q8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1403 Score = 115 bits (288), Expect = 1e-25 Identities = 89/251 (35%), Positives = 127/251 (50%), Gaps = 43/251 (17%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR--------------- 554 GA V+ ++ GD L E S++ DIT GLP+V +FEAR Sbjct: 1104 GAVVSVEDEAMVGVGDVLARLPQESSKTRDITGGLPRVADLFEARKPKDPAVLAEISGTV 1163 Query: 553 SIDSLSPNLERRI------EDWNERIPR------------------ILGVPWGFLIGAEL 446 S + +R I E E IP+ + G P I Sbjct: 1164 SFGKETKGKQRLIITGSDGERHEELIPKWRQVNVFEGEHVEKGEAIVDGPPVPHDILRLR 1223 Query: 445 TIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLL 266 + + +VN++Q+VYR QGV+I+++HIE+II Q+ KV + E G ++ FL GE I Sbjct: 1224 GVEELTYYIVNEVQEVYRLQGVKINDKHIEVIICQMLRKVEIIEPGDTS-FLKGEQIDKP 1282 Query: 265 RAERAGRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW 98 R +++ + +LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D Sbjct: 1283 RLLEENEKMEKEDKLPARFEPVLLGITKASLATESFISAASFQETTRVLTEAAVTGKCDE 1342 Query: 97 LKGLKENVVXG 65 L+GLKENV+ G Sbjct: 1343 LRGLKENVIVG 1353
>RPOC_LISMF (Q724E9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1201 Score = 115 bits (288), Expect = 1e-25 Identities = 78/222 (35%), Positives = 118/222 (53%), Gaps = 43/222 (19%) Frame = -1 Query: 601 DITQGLPKVEQIFEARS-------------IDSLSPNLERRIE----------DWNERIP 491 DITQGLP++++IFEAR+ + S+ +R+ E +N Sbjct: 948 DITQGLPRIQEIFEARNPKGQAIITEVGGEVVSIEEGRDRQQEITIQGTDDRRSYNIPYT 1007 Query: 490 RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHNRHI 359 L V G ++ + + + L+ ++QKVYR QGV+I ++H+ Sbjct: 1008 ARLRVEEGTIVERGEALTEGSVDPKALIRVRDVLSVQEYLLAEVQKVYRMQGVEIGDKHV 1067 Query: 358 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRA 191 E+++RQ+ K+RV + G +N+ LPG L+ + A R + R +LLGIT+A Sbjct: 1068 EVMVRQMLRKIRVMDTGDTNI-LPGTLMDIHTFTEANRDAILSGSQPATGRPVLLGITKA 1126 Query: 190 SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 SL T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1127 SLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVILG 1168
>RPOC_LISIN (P77879) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1201 Score = 115 bits (288), Expect = 1e-25 Identities = 78/222 (35%), Positives = 118/222 (53%), Gaps = 43/222 (19%) Frame = -1 Query: 601 DITQGLPKVEQIFEARS-------------IDSLSPNLERRIE----------DWNERIP 491 DITQGLP++++IFEAR+ + S+ +R+ E +N Sbjct: 948 DITQGLPRIQEIFEARNPKGQAIITEVGGEVVSIEEGRDRQQEITIQGTDDRRSYNIPYT 1007 Query: 490 RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHNRHI 359 L V G ++ + + + L+ ++QKVYR QGV+I ++H+ Sbjct: 1008 ARLRVEEGSIVERGEALTEGSVDPKALIRVRDVLSVQEYLLAEVQKVYRMQGVEIGDKHV 1067 Query: 358 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRA 191 E+++RQ+ K+RV + G +N+ LPG L+ + A R + R +LLGIT+A Sbjct: 1068 EVMVRQMLRKIRVMDTGDTNI-LPGTLMDIHTFTEANRDAILSGSQPATGRPVLLGITKA 1126 Query: 190 SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 SL T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1127 SLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVILG 1168
>RPOBC_WOLPM (Q73IW9) Bifunctional DNA-directed RNA polymerase, beta and beta'| chain (EC 2.7.7.6) [Includes: DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit); DNA-directed RNA polymerase beta' chain (Transcri Length = 2837 Score = 115 bits (288), Expect = 1e-25 Identities = 88/259 (33%), Positives = 126/259 (48%), Gaps = 51/259 (19%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------SIDSLS 536 GA +N G+ ++ GD + E ++ DIT GLP+V ++FEAR ID Sbjct: 2523 GAVLNVQDGQKVHAGDVITRTPRESVKTRDITGGLPRVIELFEARRPKEHAIVSEIDGYV 2582 Query: 535 PNLER--------RIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNK---------- 410 E+ I+ +E+I P +L+ + + V K Sbjct: 2583 AFSEKDRRGKRSILIKPVDEQIS-----PVEYLVSRSKHVIVNESDFVRKGDLLMDGDPD 2637 Query: 409 --------------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFL 290 IQ+VYR QGV+I N+H+E+I++Q+ KV +++ G ++L Sbjct: 2638 LHDILRVLGLEALAHYMISEIQQVYRLQGVRIDNKHLEVILKQMLQKVEITDPG-DTMYL 2696 Query: 289 PGELIGLLRAERAGRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKA 122 GE I L +R A+ S +Y IL GITRASL T SFIS ASFQET +VL +A Sbjct: 2697 VGESIDKLEVDRENDAMSNSGKRPTHYLPILQGITRASLETSSFISAASFQETTKVLTEA 2756 Query: 121 ALRGRIDWLKGLKENVVXG 65 A G+ D L GLKENV+ G Sbjct: 2757 AFCGKSDPLSGLKENVIVG 2775
>RPOC_BARHE (Q6G3X4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1402 Score = 115 bits (288), Expect = 1e-25 Identities = 86/246 (34%), Positives = 122/246 (49%), Gaps = 46/246 (18%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDS------------------- 542 G + GD + E +++ DIT GLP+V ++FEAR Sbjct: 1107 GSHVKAGDVIARLPMESAKTKDITGGLPRVAELFEARRPKDHAIIAEVSGTIRFGRGYKN 1166 Query: 541 -----LSPNLERRIEDWNERIPR------------------ILGVPWGFLIGAELTIAQS 431 + PN + +E IP+ + G P I A + Sbjct: 1167 KRRIIIEPN-DETLEPVEYLIPKGKLFHFQEGDQIEKGDYILDGNPAPHDILAIKGVEAL 1225 Query: 430 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 251 LVN+IQ+VYR QGV I+++HIE+I+RQ+ KV ++E G S ++PG+ + + + Sbjct: 1226 ASYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEITESGDSG-YIPGDHVDRIELDEI 1284 Query: 250 GRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 83 L ILLGIT+ASL T SFIS ASFQET RVL +AA+ G+ID L+GLK Sbjct: 1285 NDNLLAEGKRPASGNPILLGITKASLQTPSFISAASFQETTRVLTEAAVSGKIDTLQGLK 1344 Query: 82 ENVVXG 65 ENV+ G Sbjct: 1345 ENVIVG 1350
>RPOC_ENTFA (Q82Z41) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1217 Score = 112 bits (280), Expect(2) = 1e-25 Identities = 83/225 (36%), Positives = 119/225 (52%), Gaps = 46/225 (20%) Frame = -1 Query: 601 DITQGLPKVEQIFEARS----------------IDSLSPNLERRIEDWNERIPRILGVPW 470 DITQGLP++++IFEAR+ I ++ + + R VP+ Sbjct: 948 DITQGLPRIQEIFEARNPKGQAVITEVTGEVIDISEDPATRQKEVTIKGKTDTRTYTVPY 1007 Query: 469 --------GFLI--GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHNRH 362 G +I GA LT + L+ ++Q+VYR QGV+I ++H Sbjct: 1008 TARMKVAEGDIIHRGAPLTEGSIDPKQLLQVRDVLSVENYLLREVQRVYRMQGVEIGDKH 1067 Query: 361 IEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIY------YRAILLGI 200 IE+++RQ+ K+RV + G + + LPG L+ + AE R D + R +LLGI Sbjct: 1068 IEVMVRQMLRKIRVMDPGDTEI-LPGTLMDI--AEFKDRNYDTLVAGGVPATSRPVLLGI 1124 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 T+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1125 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDPLLGLKENVIIG 1169 Score = 23.9 bits (50), Expect(2) = 1e-25 Identities = 9/26 (34%), Positives = 16/26 (61%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHRSPQD 7 K+ +G IIP GTG ++ + P++ Sbjct: 1163 KENVIIGKIIPAGTGMARYRNMEPKE 1188
>RPOC_BARQU (Q6FZM0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1402 Score = 115 bits (287), Expect = 2e-25 Identities = 85/240 (35%), Positives = 120/240 (50%), Gaps = 46/240 (19%) Frame = -1 Query: 646 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDS------------------------L 539 GD + E +++ DIT GLP+V ++FEAR + Sbjct: 1113 GDVIARLPMESAKTKDITGGLPRVAELFEARRPKDHAIIAEVSGTIQFGRGYKNKRRIII 1172 Query: 538 SPNLERRIEDWNERIPR------------------ILGVPWGFLIGAELTIAQSRISLVN 413 PN + +E IP+ + G P I A + LVN Sbjct: 1173 EPN-DETLEPVEYLIPKGKLFHFQEGDQIEKGDYILDGNPAPHDILAIKGVEALASYLVN 1231 Query: 412 KIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL-- 239 +IQ+VYR QGV I+++HIE+I+RQ+ KV ++E G S ++PG+ + + + L Sbjct: 1232 EIQEVYRLQGVLINDKHIEVIVRQMLQKVEITESGDSG-YIPGDHVDRIELDEINDNLIA 1290 Query: 238 --DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 ILLGIT+ASL T SFIS ASFQET RVL +AA+ G+ID L+GLKENV+ G Sbjct: 1291 EGKRPASGNPILLGITKASLQTPSFISAASFQETTRVLTEAAVSGKIDTLQGLKENVIVG 1350
>RPOC_PHOPR (Q6LLW3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 114 bits (284), Expect(2) = 2e-25 Identities = 90/237 (37%), Positives = 120/237 (50%), Gaps = 43/237 (18%) Frame = -1 Query: 646 GDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------------SIDSLSPNLERRIE 512 GD L E + DIT GLP+V +FEAR S + R I Sbjct: 1119 GDILSRIPQESGGTRDITGGLPRVADLFEARKPKEPAILAEITGAVSFGKETKGKRRLII 1178 Query: 511 DWNERIP--------RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQ 404 +E P R L V G + IA + +VN++Q Sbjct: 1179 TPSEGQPYEEMIHKWRQLNVFEGEKVECGDVIADGPEAPHDILRLRGVHAVAEYIVNEVQ 1238 Query: 403 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALD---- 236 +VYR QGV+I+++HIE IIRQ+ KV + + G S FLPGE + R A R L+ Sbjct: 1239 EVYRLQGVKINDKHIETIIRQMLRKVTIVKAGDSE-FLPGEQVEFSRVNIANRKLEADGK 1297 Query: 235 ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 + + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1298 DIVTFSRDLLGITKASLATESFISAASFQETTRVLTEAAVSGKRDPLRGLKENVIVG 1354 Score = 21.9 bits (45), Expect(2) = 2e-25 Identities = 10/25 (40%), Positives = 13/25 (52%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHRSPQ 10 K+ +G +IP GTGF R Q Sbjct: 1348 KENVIVGRLIPAGTGFSYHQRRQNQ 1372
>RPOC_PARUW (Q6MDM0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1388 Score = 114 bits (285), Expect(2) = 2e-25 Identities = 87/252 (34%), Positives = 130/252 (51%), Gaps = 44/252 (17%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL 527 GA ++ GE G L ++ DIT GLP+V ++FEAR I + + Sbjct: 1105 GAIISVEEGEFATAGKMLARLPRSAIKTKDITGGLPRVAELFEARKPKDSAEIAKIDGVV 1164 Query: 526 ERRIEDWNERI----PRILGVPWGFLI----------------GAELT------------ 443 + R N+RI + G+ LI G +LT Sbjct: 1165 DFRGVQKNKRIVVVRDEMTGMEEEHLISHTKHLIIQRGDHVVKGQQLTDGLVIPHEILDI 1224 Query: 442 --IAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGL 269 + + + LVN++Q+VYR QGV I+++HIEII+RQ+ KVRV + G +++ L GE + Sbjct: 1225 CGVRELQKYLVNQVQEVYRLQGVDINDKHIEIIVRQMLKKVRVIDPGDTSL-LYGEEVDK 1283 Query: 268 LRAERAGRALDE----SIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRID 101 E + + + + +LLGIT+ASL+T+SFIS ASFQ+T RVL +AA G+ D Sbjct: 1284 KEFEVENQKVSQEGGKAAQATPVLLGITKASLSTESFISAASFQDTTRVLTEAACAGKTD 1343 Query: 100 WLKGLKENVVXG 65 +L G KENV+ G Sbjct: 1344 YLVGFKENVIMG 1355 Score = 21.6 bits (44), Expect(2) = 2e-25 Identities = 9/18 (50%), Positives = 12/18 (66%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQK 31 K+ +G IIP GTGF + Sbjct: 1349 KENVIMGHIIPGGTGFDR 1366
>RPOC_STRA5 (Q8E238) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1216 Score = 114 bits (284), Expect(2) = 2e-25 Identities = 84/225 (37%), Positives = 125/225 (55%), Gaps = 44/225 (19%) Frame = -1 Query: 607 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRILG----------V 476 ++DITQGLP++++IFEAR+ I + + ED + R ++ V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGEVVAIEEDSSTRTKKVFVKGQTGEGEYVV 1007 Query: 475 PWGFLI----------GAELT---IAQSRIS-----------LVNKIQKVYRSQGVQIHN 368 P+ + GA LT I R+ L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVARGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 200 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 T+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIG 1171 Score = 21.9 bits (45), Expect(2) = 2e-25 Identities = 9/24 (37%), Positives = 14/24 (58%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHRSP 13 K+ +G IIP GTG ++ + P Sbjct: 1165 KENVIIGKIIPAGTGMARYRNIEP 1188
>RPOC_STRA3 (Q8E7J7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1216 Score = 114 bits (284), Expect(2) = 2e-25 Identities = 84/225 (37%), Positives = 125/225 (55%), Gaps = 44/225 (19%) Frame = -1 Query: 607 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRILG----------V 476 ++DITQGLP++++IFEAR+ I + + ED + R ++ V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGEVVAIEEDSSTRTKKVFVKGQTGEGEYVV 1007 Query: 475 PWGFLI----------GAELT---IAQSRIS-----------LVNKIQKVYRSQGVQIHN 368 P+ + GA LT I R+ L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVARGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 200 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 T+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIG 1171 Score = 21.9 bits (45), Expect(2) = 2e-25 Identities = 9/24 (37%), Positives = 14/24 (58%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHRSP 13 K+ +G IIP GTG ++ + P Sbjct: 1165 KENVIIGKIIPAGTGMARYRNIEP 1188
>RPOC_STRA1 (Q3K3L1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1216 Score = 114 bits (284), Expect(2) = 2e-25 Identities = 84/225 (37%), Positives = 125/225 (55%), Gaps = 44/225 (19%) Frame = -1 Query: 607 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRILG----------V 476 ++DITQGLP++++IFEAR+ I + + ED + R ++ V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGEVVAIEEDSSTRTKKVFVKGQTGEGEYVV 1007 Query: 475 PWGFLI----------GAELT---IAQSRIS-----------LVNKIQKVYRSQGVQIHN 368 P+ + GA LT I R+ L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVARGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 200 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 T+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIG 1171 Score = 21.9 bits (45), Expect(2) = 2e-25 Identities = 9/24 (37%), Positives = 14/24 (58%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHRSP 13 K+ +G IIP GTG ++ + P Sbjct: 1165 KENVIIGKIIPAGTGMARYRNIEP 1188
>RPOC_STAHJ (Q4L3K4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1206 Score = 114 bits (286), Expect(2) = 2e-25 Identities = 82/225 (36%), Positives = 120/225 (53%), Gaps = 45/225 (20%) Frame = -1 Query: 604 SDITQGLPKVEQIFEARSI--DSLSPNLERRIED-------------------------W 506 SDITQGLP++++IFEAR+ ++ +E +ED Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGANETRSYLASG 1010 Query: 505 NERIPRILGV--------------PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHN 368 R+ +G P FL A L +S L+ ++QKVYR QGV+I + Sbjct: 1011 TSRLKVEVGQSVERGEVLTEGSIEPKNFLAVAGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 200 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R + + +LLGI Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHSFTDANREAFKERKRPATAKPVLLGI 1127 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 T+ASL T+SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1128 TKASLETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIG 1172 Score = 21.2 bits (43), Expect(2) = 2e-25 Identities = 7/19 (36%), Positives = 13/19 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTG +++ Sbjct: 1166 KENVIIGKLIPAGTGMRRY 1184
>RPOC_GEOKA (Q5L404) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1199 Score = 114 bits (286), Expect = 2e-25 Identities = 84/222 (37%), Positives = 123/222 (55%), Gaps = 43/222 (19%) Frame = -1 Query: 601 DITQGLPKVEQIFEARS---------IDSLSPNLERRIEDWNERI------PRILGVPWG 467 DITQGLP+V+++FEAR+ ID ++ + ++ E + R P+ Sbjct: 948 DITQGLPRVQELFEARNPKGQAVISEIDGTVISINKTRDNQYEVVVQGEVETRTYVAPYN 1007 Query: 466 FLI----------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHNRHI 359 + G ELT I + L+ ++QKVYR QGV+I ++HI Sbjct: 1008 ARLKVEEGQRVERGQELTEGSVDPKQLLRVRDITSVQEYLLREVQKVYRMQGVEISDKHI 1067 Query: 358 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLR-AERAGRALDES---IYYRAILLGITRA 191 E+++RQ+ KVRV + G ++V LPG L+ + + + +AL E R +LLGIT+A Sbjct: 1068 EVMVRQMLRKVRVIDAGDTDV-LPGTLLDVHQFTDVNAKALREGKRPATARQVLLGITKA 1126 Query: 190 SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 SL T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1127 SLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIG 1168
>RPOC_VIBVY (Q7MGS0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 114 bits (286), Expect(2) = 2e-25 Identities = 92/250 (36%), Positives = 125/250 (50%), Gaps = 43/250 (17%) Frame = -1 Query: 685 ATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------------S 551 A VN G + GD L + + DIT GLP+V +FEAR S Sbjct: 1105 AIVNIEDGAEVGIGDTLARIPQKSGGNKDITGGLPRVADLFEARKPKEPAILAEYSGTVS 1164 Query: 550 IDSLSPNLERRI------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS--------- 422 + R I E + E IP R L V G + IA + Sbjct: 1165 FGKETKGKRRLIITREGGETYEEMIPKHRQLNVFEGERVERGDVIADGPEAPHDILRLRG 1224 Query: 421 -------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLR 263 + N++Q+VYR QGV+I+++HIE I+RQ+ K ++ G S FLPGE + + Sbjct: 1225 IHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQMLRKCTITHAGDSE-FLPGETVEYSQ 1283 Query: 262 AERAGRALD----ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWL 95 + A R L+ E + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L Sbjct: 1284 VKIANRNLEAEGKEPARFERELLGITKASLATESFISAASFQETTRVLTEAAVSGKRDDL 1343 Query: 94 KGLKENVVXG 65 +GLKENV+ G Sbjct: 1344 RGLKENVIVG 1353 Score = 20.8 bits (42), Expect(2) = 2e-25 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGF 37 K+ +G +IP GTGF Sbjct: 1347 KENVIVGRLIPAGTGF 1362
>RPOC_VIBVU (Q8DD19) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 114 bits (286), Expect(2) = 2e-25 Identities = 92/250 (36%), Positives = 125/250 (50%), Gaps = 43/250 (17%) Frame = -1 Query: 685 ATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------------S 551 A VN G + GD L + + DIT GLP+V +FEAR S Sbjct: 1105 AIVNIEDGAEVGIGDTLARIPQKSGGNKDITGGLPRVADLFEARKPKEPAILAEYSGTVS 1164 Query: 550 IDSLSPNLERRI------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS--------- 422 + R I E + E IP R L V G + IA + Sbjct: 1165 FGKETKGKRRLIITREGGETYEEMIPKHRQLNVFEGERVERGDVIADGPEAPHDILRLRG 1224 Query: 421 -------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLR 263 + N++Q+VYR QGV+I+++HIE I+RQ+ K ++ G S FLPGE + + Sbjct: 1225 IHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQMLRKCTITHAGDSE-FLPGETVEYSQ 1283 Query: 262 AERAGRALD----ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWL 95 + A R L+ E + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L Sbjct: 1284 VKIANRNLEAEGKEPARFERELLGITKASLATESFISAASFQETTRVLTEAAVSGKRDDL 1343 Query: 94 KGLKENVVXG 65 +GLKENV+ G Sbjct: 1344 RGLKENVIVG 1353 Score = 20.8 bits (42), Expect(2) = 2e-25 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGF 37 K+ +G +IP GTGF Sbjct: 1347 KENVIVGRLIPAGTGF 1362
>RPOC_VIBPA (Q87KQ5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 114 bits (286), Expect(2) = 2e-25 Identities = 93/250 (37%), Positives = 126/250 (50%), Gaps = 43/250 (17%) Frame = -1 Query: 685 ATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE------ 524 A VN G + GD L + + DIT GLP+V +FEAR + E Sbjct: 1105 AIVNIEDGAEVGVGDTLARIPQKSGGNKDITGGLPRVADLFEARKPKEPAILAEHTGTVS 1164 Query: 523 --------RRI-------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS--------- 422 RR+ E + E IP R L V G + IA S Sbjct: 1165 FGKETKGKRRLVITRDSGEVYEEMIPKHRQLNVFEGERVERGDVIADGPESPHDILRLRG 1224 Query: 421 -------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLR 263 + N++Q+VYR QGV+I+++HIE I+RQ+ K ++ G S FLPGE + + Sbjct: 1225 VHAVTQYIANEVQEVYRLQGVKINDKHIETIVRQMLRKCTITHAGDSE-FLPGEQVEYSQ 1283 Query: 262 AERAGRALD----ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWL 95 + A R L+ E + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L Sbjct: 1284 VKIANRNLEAEGKEPARFERELLGITKASLATESFISAASFQETTRVLTEAAVSGKRDDL 1343 Query: 94 KGLKENVVXG 65 +GLKENV+ G Sbjct: 1344 RGLKENVIVG 1353 Score = 20.8 bits (42), Expect(2) = 2e-25 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGF 37 K+ +G +IP GTGF Sbjct: 1347 KENVIVGRLIPAGTGF 1362
>RPOC_STAES (Q8CQ83) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 114 bits (285), Expect(2) = 2e-25 Identities = 81/225 (36%), Positives = 119/225 (52%), Gaps = 45/225 (20%) Frame = -1 Query: 604 SDITQGLPKVEQIFEARS-------------IDSLSPNLERRIE--------------DW 506 SDITQGLP++++IFEAR+ +D + +R+ E Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVDDIKLAKDRQQEIIVKGANETRSYLASG 1010 Query: 505 NERIPRILGV--------------PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHN 368 R+ +G P +L A L +S L+ ++QKVYR QGV+I + Sbjct: 1011 TSRLKVEIGQSVERGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGI 200 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R + +LLGI Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANRDAFKHRKRPATAKPVLLGI 1127 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 T+ASL T+SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1128 TKASLETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIG 1172 Score = 21.2 bits (43), Expect(2) = 2e-25 Identities = 7/19 (36%), Positives = 13/19 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTG +++ Sbjct: 1166 KENVIIGKLIPAGTGMRRY 1184
>RPOC_STAEQ (Q5HRK9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 114 bits (285), Expect(2) = 2e-25 Identities = 81/225 (36%), Positives = 119/225 (52%), Gaps = 45/225 (20%) Frame = -1 Query: 604 SDITQGLPKVEQIFEARS-------------IDSLSPNLERRIE--------------DW 506 SDITQGLP++++IFEAR+ +D + +R+ E Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVDDIKLAKDRQQEIIVKGANETRSYLASG 1010 Query: 505 NERIPRILGV--------------PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHN 368 R+ +G P +L A L +S L+ ++QKVYR QGV+I + Sbjct: 1011 TSRLKVEIGQSVERGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGI 200 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R + +LLGI Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANRDAFKHRKRPATAKPVLLGI 1127 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 T+ASL T+SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1128 TKASLETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIG 1172 Score = 21.2 bits (43), Expect(2) = 2e-25 Identities = 7/19 (36%), Positives = 13/19 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTG +++ Sbjct: 1166 KENVIIGKLIPAGTGMRRY 1184
>RPOC_STAAW (P60286) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 114 bits (285), Expect(2) = 2e-25 Identities = 84/228 (36%), Positives = 122/228 (53%), Gaps = 48/228 (21%) Frame = -1 Query: 604 SDITQGLPKVEQIFEARSI--DSLSPNLERRIED-------------------------W 506 SDITQGLP++++IFEAR+ ++ +E +ED Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGANETRSYLASG 1010 Query: 505 NERIPRILGVPW--------------GFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHN 368 RI +G P +L A L +S L+ ++QKVYR QGV+I + Sbjct: 1011 TSRIIVEIGQPVQRGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRA-------IL 209 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R E+ +R +L Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANR---EAFKHRKRPATAKPVL 1124 Query: 208 LGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 LGIT+ASL T+SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1125 LGITKASLETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIG 1172 Score = 21.2 bits (43), Expect(2) = 2e-25 Identities = 7/19 (36%), Positives = 13/19 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTG +++ Sbjct: 1166 KENVIIGKLIPAGTGMRRY 1184
>RPOC_STAAS (Q6GBU4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 114 bits (285), Expect(2) = 2e-25 Identities = 84/228 (36%), Positives = 122/228 (53%), Gaps = 48/228 (21%) Frame = -1 Query: 604 SDITQGLPKVEQIFEARSI--DSLSPNLERRIED-------------------------W 506 SDITQGLP++++IFEAR+ ++ +E +ED Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGANETRSYLASG 1010 Query: 505 NERIPRILGVPW--------------GFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHN 368 RI +G P +L A L +S L+ ++QKVYR QGV+I + Sbjct: 1011 TSRIIVEIGQPVQRGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRA-------IL 209 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R E+ +R +L Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANR---EAFKHRKRPATAKPVL 1124 Query: 208 LGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 LGIT+ASL T+SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1125 LGITKASLETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIG 1172 Score = 21.2 bits (43), Expect(2) = 2e-25 Identities = 7/19 (36%), Positives = 13/19 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTG +++ Sbjct: 1166 KENVIIGKLIPAGTGMRRY 1184
>RPOC_STAAR (Q6GJC5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 114 bits (285), Expect(2) = 2e-25 Identities = 84/228 (36%), Positives = 122/228 (53%), Gaps = 48/228 (21%) Frame = -1 Query: 604 SDITQGLPKVEQIFEARSI--DSLSPNLERRIED-------------------------W 506 SDITQGLP++++IFEAR+ ++ +E +ED Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGANETRSYLASG 1010 Query: 505 NERIPRILGVPW--------------GFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHN 368 RI +G P +L A L +S L+ ++QKVYR QGV+I + Sbjct: 1011 TSRIIVEIGQPVQRGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRA-------IL 209 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R E+ +R +L Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANR---EAFKHRKRPATAKPVL 1124 Query: 208 LGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 LGIT+ASL T+SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1125 LGITKASLETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIG 1172 Score = 21.2 bits (43), Expect(2) = 2e-25 Identities = 7/19 (36%), Positives = 13/19 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTG +++ Sbjct: 1166 KENVIIGKLIPAGTGMRRY 1184
>RPOC_STAAN (P60285) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 114 bits (285), Expect(2) = 2e-25 Identities = 84/228 (36%), Positives = 122/228 (53%), Gaps = 48/228 (21%) Frame = -1 Query: 604 SDITQGLPKVEQIFEARSI--DSLSPNLERRIED-------------------------W 506 SDITQGLP++++IFEAR+ ++ +E +ED Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGANETRSYLASG 1010 Query: 505 NERIPRILGVPW--------------GFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHN 368 RI +G P +L A L +S L+ ++QKVYR QGV+I + Sbjct: 1011 TSRIIVEIGQPVQRGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRA-------IL 209 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R E+ +R +L Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANR---EAFKHRKRPATAKPVL 1124 Query: 208 LGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 LGIT+ASL T+SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1125 LGITKASLETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIG 1172 Score = 21.2 bits (43), Expect(2) = 2e-25 Identities = 7/19 (36%), Positives = 13/19 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTG +++ Sbjct: 1166 KENVIIGKLIPAGTGMRRY 1184
>RPOC_STAAM (P60284) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 114 bits (285), Expect(2) = 2e-25 Identities = 84/228 (36%), Positives = 122/228 (53%), Gaps = 48/228 (21%) Frame = -1 Query: 604 SDITQGLPKVEQIFEARSI--DSLSPNLERRIED-------------------------W 506 SDITQGLP++++IFEAR+ ++ +E +ED Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGANETRSYLASG 1010 Query: 505 NERIPRILGVPW--------------GFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHN 368 RI +G P +L A L +S L+ ++QKVYR QGV+I + Sbjct: 1011 TSRIIVEIGQPVQRGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRA-------IL 209 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R E+ +R +L Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANR---EAFKHRKRPATAKPVL 1124 Query: 208 LGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 LGIT+ASL T+SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1125 LGITKASLETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIG 1172 Score = 21.2 bits (43), Expect(2) = 2e-25 Identities = 7/19 (36%), Positives = 13/19 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTG +++ Sbjct: 1166 KENVIIGKLIPAGTGMRRY 1184
>RPOC_STAAC (Q5HID2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 114 bits (285), Expect(2) = 2e-25 Identities = 84/228 (36%), Positives = 122/228 (53%), Gaps = 48/228 (21%) Frame = -1 Query: 604 SDITQGLPKVEQIFEARSI--DSLSPNLERRIED-------------------------W 506 SDITQGLP++++IFEAR+ ++ +E +ED Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGANETRSYLASG 1010 Query: 505 NERIPRILGVPW--------------GFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHN 368 RI +G P +L A L +S L+ ++QKVYR QGV+I + Sbjct: 1011 TSRIIVEIGQPVQRGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRA-------IL 209 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R E+ +R +L Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANR---EAFKHRKRPATAKPVL 1124 Query: 208 LGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 LGIT+ASL T+SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1125 LGITKASLETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIG 1172 Score = 21.2 bits (43), Expect(2) = 2e-25 Identities = 7/19 (36%), Positives = 13/19 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTG +++ Sbjct: 1166 KENVIIGKLIPAGTGMRRY 1184
>RPOC_BUCAP (P41185) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1413 Score = 114 bits (285), Expect = 3e-25 Identities = 90/238 (37%), Positives = 123/238 (51%), Gaps = 44/238 (18%) Frame = -1 Query: 646 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 515 GD L E + DIT GLP+V +FEAR L+ E RR+ Sbjct: 1118 GDTLARVPQESGGTKDITGGLPRVADLFEARRPKELAILAEISGIISFGKETKGKRRLII 1177 Query: 514 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 407 + + E IP R L V G + I+ S +VN++ Sbjct: 1178 TPVDGSDAYEEMIPKWRQLNVFEGERVERGDVISDGPESPHDILRLRGVQAVTKYIVNEV 1237 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESI 227 Q+VYR QGV+I+++HIE+IIRQ+ K V + G S FL GE + R + + R L++ Sbjct: 1238 QEVYRLQGVKINDKHIEVIIRQMLRKATVIKSGNSE-FLDGEQVEFSRIKISNRILNKQS 1296 Query: 226 YYRAI----LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 A LLGIT+ASL T+SFIS ASFQET RVL ++A+ G+ D L+GLKENV+ G Sbjct: 1297 KIPATFSRDLLGITKASLATESFISAASFQETTRVLTESAVAGKKDELRGLKENVIVG 1354
>RPOC_RALSO (Q8XUZ9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1409 Score = 114 bits (285), Expect = 3e-25 Identities = 89/257 (34%), Positives = 131/257 (50%), Gaps = 49/257 (19%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE----- 524 GA + G+ ++ G+ L E ++ DIT GLP+V ++FEARS + E Sbjct: 1111 GALITVKDGQQVHVGEVLARIPTESQKTRDITGGLPRVAELFEARSPKDAAVLAEVTGTT 1170 Query: 523 --RRIEDWNER--IPRILGVPWGFLIGAELTIAQSRISLVNK------------------ 410 + +R I + G FLI E + +VNK Sbjct: 1171 SFGKDTKGKQRLVITDLDGNAHEFLIAKEKQVLVHDGQVVNKGEMIVEGPADPHDILRLK 1230 Query: 409 ------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLL 266 +Q VYR QGV+I+++HIE+I+RQ+ +V++ + G + F+PGE + Sbjct: 1231 GVEELATYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQIVDVGDTK-FIPGEQV--- 1286 Query: 265 RAERAGRALDES----------IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAL 116 ER+ LDE+ Y +LLGIT+ASL+T SFIS ASFQET RVL +AA+ Sbjct: 1287 --ERS-ELLDENDKVIAEGKRPATYENLLLGITKASLSTDSFISAASFQETTRVLTEAAI 1343 Query: 115 RGRIDWLKGLKENVVXG 65 G++D L+GLKENV+ G Sbjct: 1344 MGKVDDLRGLKENVIVG 1360
>RPOC_RALEJ (Q46WD5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1415 Score = 114 bits (285), Expect = 3e-25 Identities = 90/257 (35%), Positives = 131/257 (50%), Gaps = 49/257 (19%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE----- 524 GA + G+ ++ G+ L E ++ DIT GLP+V ++FEARS + E Sbjct: 1111 GALITVKDGQQVHVGEVLARIPTESQKTRDITGGLPRVAELFEARSPKDAAVLAEVTGTT 1170 Query: 523 --RRIEDWNER--IPRILGVPWGFLIGAELTIAQSRISLVNK------------------ 410 + +R I + G FLI E + +VNK Sbjct: 1171 SFGKDTKGKQRLVITDLDGNAHEFLIAKEKQVLVHDGQVVNKGEMIVEGPADPHDILRLK 1230 Query: 409 ------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLL 266 +Q VYR QGV+I+++HIE+I+RQ+ +V+V++ G + F+PGE + Sbjct: 1231 GIEELAHYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQVADVGDTK-FIPGEQV--- 1286 Query: 265 RAERAGRALDES----------IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAL 116 ER+ LDE+ Y +LLGIT+ASL+T SFIS ASFQET RVL +AA+ Sbjct: 1287 --ERS-ELLDENDRVIAEGKRPATYENLLLGITKASLSTDSFISAASFQETTRVLTEAAI 1343 Query: 115 RGRIDWLKGLKENVVXG 65 G+ D L+GLKENV+ G Sbjct: 1344 MGKTDDLRGLKENVIVG 1360
>RPOC_SHISS (Q3YUZ6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 114 bits (285), Expect = 3e-25 Identities = 92/244 (37%), Positives = 125/244 (51%), Gaps = 44/244 (18%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 524 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKG 1171 Query: 523 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 422 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 244 ALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 L+ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKEN Sbjct: 1291 ELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 Query: 76 VVXG 65 V+ G Sbjct: 1351 VIVG 1354
>RPOC_SHIFL (P0A8T9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 114 bits (285), Expect = 3e-25 Identities = 92/244 (37%), Positives = 125/244 (51%), Gaps = 44/244 (18%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 524 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKG 1171 Query: 523 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 422 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 244 ALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 L+ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKEN Sbjct: 1291 ELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 Query: 76 VVXG 65 V+ G Sbjct: 1351 VIVG 1354
>RPOC_SHIDS (Q32AG0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 114 bits (285), Expect = 3e-25 Identities = 92/244 (37%), Positives = 125/244 (51%), Gaps = 44/244 (18%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 524 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKG 1171 Query: 523 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 422 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 244 ALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 L+ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKEN Sbjct: 1291 ELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 Query: 76 VVXG 65 V+ G Sbjct: 1351 VIVG 1354
>RPOC_SHIBS (Q31U09) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 114 bits (285), Expect = 3e-25 Identities = 92/244 (37%), Positives = 125/244 (51%), Gaps = 44/244 (18%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 524 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKG 1171 Query: 523 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 422 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 244 ALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 L+ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKEN Sbjct: 1291 ELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 Query: 76 VVXG 65 V+ G Sbjct: 1351 VIVG 1354
>RPOC_ECOLI (P0A8T7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 114 bits (285), Expect = 3e-25 Identities = 92/244 (37%), Positives = 125/244 (51%), Gaps = 44/244 (18%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 524 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKG 1171 Query: 523 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 422 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 244 ALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 L+ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKEN Sbjct: 1291 ELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 Query: 76 VVXG 65 V+ G Sbjct: 1351 VIVG 1354
>RPOC_ECOL6 (Q8FB83) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 114 bits (285), Expect = 3e-25 Identities = 92/244 (37%), Positives = 125/244 (51%), Gaps = 44/244 (18%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 524 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKG 1171 Query: 523 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 422 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 244 ALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 L+ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKEN Sbjct: 1291 ELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 Query: 76 VVXG 65 V+ G Sbjct: 1351 VIVG 1354
>RPOC_ECO57 (P0A8T8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 114 bits (285), Expect = 3e-25 Identities = 92/244 (37%), Positives = 125/244 (51%), Gaps = 44/244 (18%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 524 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEISGIVSFGKETKG 1171 Query: 523 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 422 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 244 ALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 L+ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKEN Sbjct: 1291 ELEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 Query: 76 VVXG 65 V+ G Sbjct: 1351 VIVG 1354
>RPOC_RHOPA (Q6N4S0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1402 Score = 114 bits (285), Expect = 3e-25 Identities = 88/257 (34%), Positives = 136/257 (52%), Gaps = 45/257 (17%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR----------- 554 + + A ++ G + GD L E +++ DIT GLP+V ++FEAR Sbjct: 1095 MLSVDAILSVDVGAQVKPGDILARISTESAKTRDITGGLPRVAELFEARRPKDAAIIAEI 1154 Query: 553 ----------------SIDSLSPNLERR-----------IEDWN--ERIPRIL-GVPWGF 464 SI+ L N E R ++D + E+ I+ G P Sbjct: 1155 AGTIRFGRDYKNKRRLSIEPLDKNEEAREYLIPKGKHIHLQDGDVVEKGDFIVEGNPAPH 1214 Query: 463 LIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPG 284 I A I + LVN+IQ+VYR QGV I+++HIE+I+RQ+ K+ +++ G +++ + G Sbjct: 1215 DILAIKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKIEITDQGDTDM-ISG 1273 Query: 283 ELIGLLRAERAG-RALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAL 116 E + + +A++E +LLGIT+ASL T+SF S ASFQET RVL +AA+ Sbjct: 1274 EQVDKIEFNALNAKAVEEGKKPATGNPVLLGITKASLQTRSFFSAASFQETTRVLTEAAV 1333 Query: 115 RGRIDWLKGLKENVVXG 65 G++D L+GLKENV+ G Sbjct: 1334 NGKVDPLEGLKENVIVG 1350
>RPOC_AGRT5 (Q8UE09) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1402 Score = 114 bits (285), Expect = 3e-25 Identities = 83/244 (34%), Positives = 127/244 (52%), Gaps = 44/244 (18%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL-------- 527 G + +GD L E +++ DIT GLP+V ++FEAR I + + Sbjct: 1106 GSKVSQGDVLARSPLESAKTKDITGGLPRVAELFEARRPKDHAIIAEIDGTIRLGRDYKN 1165 Query: 526 ERRI-----EDWNERIPRIL--GVPWGFLIGAELTIAQSRIS------------------ 422 +RR+ ED E + ++ G P+ G + + + Sbjct: 1166 KRRVMIEPAEDGVEPVEYLIPKGKPFHLQEGDYIEKGEYILDGNPAPHDILAIKGVEALA 1225 Query: 421 --LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG 248 LVN+IQ+VYR QGV I+++HIE+I+RQ+ KV +++ G S + + + + Sbjct: 1226 SYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVEITDAGDSQYIVGDNVDRIEMEDMND 1285 Query: 247 RALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 R ++E Y +LLGIT+ASL T SFIS ASFQET +VL +AA+ G+ D L+GLKEN Sbjct: 1286 RLIEEGKKPAYGEPVLLGITKASLQTPSFISAASFQETTKVLTEAAIAGKTDTLQGLKEN 1345 Query: 76 VVXG 65 V+ G Sbjct: 1346 VIVG 1349
>RPOBC_WOLTR (Q5GRY9) Bifunctional DNA-directed RNA polymerase, beta and beta'| chain (EC 2.7.7.6) [Includes: DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit); DNA-directed RNA polymerase beta' chain (Transcri Length = 2839 Score = 114 bits (285), Expect = 3e-25 Identities = 89/254 (35%), Positives = 129/254 (50%), Gaps = 46/254 (18%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------SIDS-- 542 GA +N G+ ++ GD + E ++ DIT GLP+V ++FEAR ID Sbjct: 2526 GAVLNVQDGQKVHAGDVITRTPRESVKTRDITGGLPRVIELFEARRPREHAIVSEIDGHV 2585 Query: 541 LSPNLERR------IEDWNERIPRIL-------------------------GVPWGFLIG 455 + +RR I+ NE+I I G P I Sbjct: 2586 VFSEKDRRGKRSVLIKPLNEQISPIEYLVSRSKHVIVNEGDFVRKGDLLMDGDPDLHDIL 2645 Query: 454 AELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 275 L + ++++IQ+VYR QGV+I N+H+E+I++Q+ KV +++ G ++L GE I Sbjct: 2646 RVLGLEALAHYMISEIQQVYRLQGVRIDNKHLEVILKQMLQKVEITDPG-DTMYLVGESI 2704 Query: 274 GLLRAERAGRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGR 107 L ++ + S Y IL GITRASL T+SFIS ASFQET +VL +AA G+ Sbjct: 2705 DKLEVDKGNDVMSNSGKRPACYLPILQGITRASLETKSFISAASFQETTKVLTEAAFCGK 2764 Query: 106 IDWLKGLKENVVXG 65 D L GLKENV+ G Sbjct: 2765 EDPLSGLKENVIVG 2778
>RPOC_BIFLO (Q8G515) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1345 Score = 114 bits (285), Expect = 3e-25 Identities = 84/233 (36%), Positives = 125/233 (53%), Gaps = 52/233 (22%) Frame = -1 Query: 607 SSDITQGLPKVEQIFEARSIDSLSPNLE-------------RRI------------EDW- 506 +SDITQGLP+V ++FEAR+ +P E R+I ED Sbjct: 1029 ASDITQGLPRVTELFEARTPKGEAPITEFAGSIKIVENDRGRQIILTPDADSGAPKEDGV 1088 Query: 505 --------NERIPRILGVPWGFLIGAEL-----------TIAQSR---ISLVNKIQKVYR 392 ++R+P + +G +L TI R +++V ++ VYR Sbjct: 1089 IKPITYQVSKRVPLKVADGDHIKVGTQLVEGSVDPKKILTILGKRAAQVNIVEEVHTVYR 1148 Query: 391 SQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IY 224 SQGV IH++HIE+I+ Q+T +V + + G +++ LPGEL+ R R + ++ Sbjct: 1149 SQGVDIHDKHIEVIVHQMTRRVTIIDSGDTDL-LPGELVDNARFREINRNIVKNGGRPAV 1207 Query: 223 YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 R L+GIT+ASL T S++S ASFQET RVL +AAL ++D LKGLKENV+ G Sbjct: 1208 GRPALMGITKASLATDSWLSAASFQETTRVLTEAALSEKVDDLKGLKENVIIG 1260
>RPOC_LEIXX (Q6ACX6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1291 Score = 114 bits (285), Expect(2) = 3e-25 Identities = 82/224 (36%), Positives = 122/224 (54%), Gaps = 43/224 (19%) Frame = -1 Query: 607 SSDITQGLPKVEQIFEARSIDSLSPNLE---RRIEDWNERIPRILGVPWG---------- 467 + DITQGLP+V+++FEAR+ SP E R + + ++ +++ P Sbjct: 1006 ADDITQGLPRVQELFEARTPKGASPIAEAAGRIVIEETDKSRKVILTPDNGDEPHVYPVL 1065 Query: 466 ------------FLIGAELTIA--------------QSRISLVNKIQKVYRSQGVQIHNR 365 +G +L + + + LV +Q VYRSQGV IH++ Sbjct: 1066 KRSTLLVEDRQQVELGQQLIVGTVDPKEVLRVKGVREVQKHLVGGVQGVYRSQGVPIHDK 1125 Query: 364 HIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR-ALDE---SIYYRAILLGIT 197 HIE+I+RQ+ KV V + G +++ LPGEL+ R R AL E + R ++GIT Sbjct: 1126 HIEVIVRQMLRKVTVVDHGDTDL-LPGELVDRSRYNEINRGALQEGKKTASARQEVMGIT 1184 Query: 196 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 +ASL T+S++S ASFQET RVL +AA+ G+ D L GLKENV+ G Sbjct: 1185 KASLATESWLSAASFQETTRVLTQAAMEGKSDPLIGLKENVIIG 1228 Score = 20.8 bits (42), Expect(2) = 3e-25 Identities = 7/19 (36%), Positives = 12/19 (63%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTG ++ Sbjct: 1222 KENVIIGKLIPAGTGLSRY 1240
>RPOC_PELCD (Q3A6Q3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 112 bits (281), Expect(2) = 4e-25 Identities = 86/257 (33%), Positives = 136/257 (52%), Gaps = 43/257 (16%) Frame = -1 Query: 706 LILATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------ID 545 +I+A+ TV+G G IL K R E +++ DIT GLP+V ++FEAR I Sbjct: 1093 IIVASEDETVSG--GAILAKIPR------ETTKTKDITGGLPRVAELFEARKPKEYAIIS 1144 Query: 544 SLSPNLERRIEDWNERIPRI---LGVPWGFLI----------GAELTIAQSRIS------ 422 + + + +R + +G P +LI G + ++ + Sbjct: 1145 EIDGVVSFGKDSKGKRKVHVTPEVGSPKEYLIPKGKHISVHEGDHIKAGEALMDGSSNPH 1204 Query: 421 --------------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPG 284 LV+++Q+VYR QGV+I+++HIE+I+RQ+ +VR+ E G + FL Sbjct: 1205 DILRVLGEKELAKYLVDEVQEVYRLQGVKINDKHIEVIVRQMLRRVRIKEPGNTR-FLAD 1263 Query: 283 ELIGLLRAERAGRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAL 116 + + E R + ++LGIT+ASL+T+SFIS ASFQET +VL +AA+ Sbjct: 1264 DQVERWEFECENRKVVGEGGAPAVGEPLMLGITKASLSTESFISAASFQETTKVLTQAAI 1323 Query: 115 RGRIDWLKGLKENVVXG 65 G+ID+L+GLKENV+ G Sbjct: 1324 EGKIDYLRGLKENVIMG 1340 Score = 21.9 bits (45), Expect(2) = 4e-25 Identities = 8/19 (42%), Positives = 12/19 (63%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTG K+ Sbjct: 1334 KENVIMGRLIPAGTGISKY 1352
>RPOC_DESVH (Q727C6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1385 Score = 111 bits (277), Expect(2) = 4e-25 Identities = 86/252 (34%), Positives = 127/252 (50%), Gaps = 44/252 (17%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL 527 GA + G+ L GD + E S++ DI GLP+V ++FE R + ++ + Sbjct: 1093 GAIIMVKNGQDLQAGDIIARKPRETSKTKDIVGGLPRVAELFEVRKPKDMAVVSEIAGIV 1152 Query: 526 ERRIEDWNER---IPRILGVPWGFLI--GAELTIAQSRIS-------------------- 422 E +R + +G +L+ G +T+ Sbjct: 1153 TYAGETKGKRKLVVTPEIGEAKEYLVPKGKHITVTDGDFVEAGDLLTEGHPELHDILRTR 1212 Query: 421 --------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI--G 272 L ++IQ+VYR QGV I ++HIE+I+RQ+ KV V + G FL GE + G Sbjct: 1213 GEKYLARYLTDEIQEVYRFQGVAIDDKHIEVIVRQMLKKVTVLDPG-GTTFLVGEQVDKG 1271 Query: 271 LLRAERAGRALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRID 101 R E RA+ E ++LGIT+ASL T SFIS ASFQET +VL +A+LRG++D Sbjct: 1272 EFRVENT-RAMGEGRTPATAEPLVLGITQASLTTSSFISAASFQETTKVLTEASLRGKMD 1330 Query: 100 WLKGLKENVVXG 65 +L+GLKENV+ G Sbjct: 1331 YLRGLKENVIVG 1342 Score = 23.5 bits (49), Expect(2) = 4e-25 Identities = 8/21 (38%), Positives = 16/21 (76%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVH 22 K+ +G +IP GTG++++V+ Sbjct: 1336 KENVIVGRLIPAGTGYREYVN 1356
>RPOC_STAS1 (Q49V53) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 113 bits (283), Expect(2) = 4e-25 Identities = 82/225 (36%), Positives = 123/225 (54%), Gaps = 45/225 (20%) Frame = -1 Query: 604 SDITQGLPKVEQIFEARS-------------IDSLSPNLERR----IEDWNE-------- 500 SDITQGLP++++IFEAR+ +D + +R+ I+ NE Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVDDIKLAKDRQQEIVIKGANETKSYLASG 1010 Query: 499 --RIPRILGV--------------PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHN 368 R+ +G P +L + L +S L+ ++QKVYR QGV+I + Sbjct: 1011 TSRLKVEVGQSVERGEVLTEGSIEPKNYLSVSGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 200 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R + + +LLGI Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANREAFKERKRPATAKPVLLGI 1127 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 T+ASL T+SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1128 TKASLETESFLSAASFQETTRVLTDAAIKGKRDNLLGLKENVIIG 1172 Score = 21.2 bits (43), Expect(2) = 4e-25 Identities = 7/19 (36%), Positives = 13/19 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTG +++ Sbjct: 1166 KENVIIGKLIPAGTGMRRY 1184
>RPOC_NITWN (Q3SSX9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 113 bits (283), Expect = 5e-25 Identities = 90/257 (35%), Positives = 133/257 (51%), Gaps = 45/257 (17%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSL 539 + + A ++ G + GD L E +++ DIT GLP+V ++FEAR I + Sbjct: 1093 MLSVDAILSVDVGAKVKPGDILARISTESAKTRDITGGLPRVAELFEARRPKDAAIIAEI 1152 Query: 538 SPNL--------ERRIE----DWNER-----IPR------------------ILGVPWGF 464 + + +RRI D E IP+ + G P Sbjct: 1153 AGTIRFGRDYKNKRRISIEPVDQEEETREYLIPKGKHIHLQDGDIVEKGDFIVDGNPAPH 1212 Query: 463 LIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPG 284 I A I + LVN+IQ+VYR QGV I+++HIE+I+RQ+ KV + + G +++ + G Sbjct: 1213 DILAIKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEIIDQGETDM-ISG 1271 Query: 283 ELIGLLRAERAGRALDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAAL 116 E I + +R E A +LLGIT+ASL T+SF S ASFQET RVL +AA+ Sbjct: 1272 EQIDKIEFDRLNLKAQEEGKKIATGTPVLLGITKASLQTRSFFSAASFQETTRVLTEAAV 1331 Query: 115 RGRIDWLKGLKENVVXG 65 G++D L+GLKENV+ G Sbjct: 1332 NGKVDPLEGLKENVIVG 1348
>RPOC_RHILO (Q98N65) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1398 Score = 113 bits (283), Expect = 5e-25 Identities = 62/123 (50%), Positives = 85/123 (69%), Gaps = 4/123 (3%) Frame = -1 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 LVN+IQ+VYR QGV I+++HIE+I+RQ+ KV ++ G S ++PG+ + ++ E Sbjct: 1227 LVNEIQEVYRLQGVSINDKHIEVIVRQMLQKVEITTQGDST-YIPGDHVDVIELEEVNER 1285 Query: 241 LDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 L E A +LLGIT+ASL T SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1286 LIEDGKKPAEGQPVLLGITKASLQTPSFISAASFQETTRVLTEAAVAGKTDMLQGLKENV 1345 Query: 73 VXG 65 + G Sbjct: 1346 IVG 1348 Score = 34.3 bits (77), Expect = 0.39 Identities = 18/49 (36%), Positives = 28/49 (57%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR 554 L + A ++ G + GD L E +++ DIT GLP+V ++FEAR Sbjct: 1093 LLSVEAILSVEPGAQVRPGDVLARIPMESAKTKDITGGLPRVAELFEAR 1141
>RPOC_XANCP (Q8PC55) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 113 bits (283), Expect = 5e-25 Identities = 93/248 (37%), Positives = 125/248 (50%), Gaps = 43/248 (17%) Frame = -1 Query: 679 VNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR------ 518 VN G + GD + E S++ DIT GLP+V +FEAR + ER Sbjct: 1109 VNLQDGAAVGVGDVVAKIPQEASKTRDITGGLPRVADLFEARKPKDPAILAERSGIISFG 1168 Query: 517 ----------IEDWN-----ERIPR------------------ILGVPWGFLIGAELTIA 437 I+D + E IP+ + G P I L + Sbjct: 1169 KDTKGKQRLIIKDTDGSEHEELIPKYRQIIVFEGEHVTKGETVVDGEPSPQDILRLLGVE 1228 Query: 436 QSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA- 260 LV +IQ VYR QGV+I+++HIE+I RQ+ KV +++ G S FL GE + R Sbjct: 1229 PLAAYLVKEIQDVYRLQGVKINDKHIEVITRQMLRKVEITDQGNSK-FLNGEQVERQRVI 1287 Query: 259 ERAGRALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKG 89 E R + + Y +LLGIT+ASL T+SFIS ASFQET RVL +AA+RG D L+G Sbjct: 1288 EENARLVTRNELPAKYDPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLRG 1347 Query: 88 LKENVVXG 65 LKENV+ G Sbjct: 1348 LKENVIVG 1355
>RPOC_XANC8 (Q4URD3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 113 bits (283), Expect = 5e-25 Identities = 93/248 (37%), Positives = 125/248 (50%), Gaps = 43/248 (17%) Frame = -1 Query: 679 VNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR------ 518 VN G + GD + E S++ DIT GLP+V +FEAR + ER Sbjct: 1109 VNLQDGAAVGVGDVVAKIPQEASKTRDITGGLPRVADLFEARKPKDPAILAERSGIISFG 1168 Query: 517 ----------IEDWN-----ERIPR------------------ILGVPWGFLIGAELTIA 437 I+D + E IP+ + G P I L + Sbjct: 1169 KDTKGKQRLIIKDTDGSEHEELIPKYRQIIVFEGEHVTKGETVVDGEPSPQDILRLLGVE 1228 Query: 436 QSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA- 260 LV +IQ VYR QGV+I+++HIE+I RQ+ KV +++ G S FL GE + R Sbjct: 1229 PLAAYLVKEIQDVYRLQGVKINDKHIEVITRQMLRKVEITDQGNSK-FLNGEQVERQRVI 1287 Query: 259 ERAGRALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKG 89 E R + + Y +LLGIT+ASL T+SFIS ASFQET RVL +AA+RG D L+G Sbjct: 1288 EENARLVTRNELPAKYDPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLRG 1347 Query: 88 LKENVVXG 65 LKENV+ G Sbjct: 1348 LKENVIVG 1355
>RPOC_SALTY (P0A2R4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 113 bits (283), Expect = 5e-25 Identities = 91/244 (37%), Positives = 125/244 (51%), Gaps = 44/244 (18%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 524 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEIAGIVSFGKETKG 1171 Query: 523 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 422 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 244 ALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 L+ + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKEN Sbjct: 1291 ELEANGKVGATFSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 Query: 76 VVXG 65 V+ G Sbjct: 1351 VIVG 1354
>RPOC_SALTI (P0A2R5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 113 bits (283), Expect = 5e-25 Identities = 91/244 (37%), Positives = 125/244 (51%), Gaps = 44/244 (18%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 524 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEIAGIVSFGKETKG 1171 Query: 523 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 422 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 244 ALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 L+ + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKEN Sbjct: 1291 ELEANGKVGATFSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 Query: 76 VVXG 65 V+ G Sbjct: 1351 VIVG 1354
>RPOC_SALPA (Q5PK92) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 113 bits (283), Expect = 5e-25 Identities = 91/244 (37%), Positives = 125/244 (51%), Gaps = 44/244 (18%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 524 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEIAGIVSFGKETKG 1171 Query: 523 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 422 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 244 ALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 L+ + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKEN Sbjct: 1291 ELEANGKVGATFSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 Query: 76 VVXG 65 V+ G Sbjct: 1351 VIVG 1354
>RPOC_SALCH (Q57H68) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 113 bits (283), Expect = 5e-25 Identities = 91/244 (37%), Positives = 125/244 (51%), Gaps = 44/244 (18%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 524 G + GD L E + DIT GLP+V +FEAR I S + Sbjct: 1112 GVQISSGDTLARIPQESGGTKDITGGLPRVADLFEARRPKEPAILAEIAGIVSFGKETKG 1171 Query: 523 -RRI--------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS------- 422 RR+ + + E IP R L V G + G E R+ Sbjct: 1172 KRRLVITPVDGSDPYEEMIPKWRQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTR 1231 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSD-FLEGEQVEYSRVKIANR 1290 Query: 244 ALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 L+ + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKEN Sbjct: 1291 ELEANGKVGATFSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 Query: 76 VVXG 65 V+ G Sbjct: 1351 VIVG 1354
>RPOC_HAEDU (Q7VKL8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1420 Score = 113 bits (283), Expect(2) = 5e-25 Identities = 88/237 (37%), Positives = 125/237 (52%), Gaps = 43/237 (18%) Frame = -1 Query: 646 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 515 G+ L E + DIT GLP+V +FEAR + E RR+ Sbjct: 1119 GEALARIPQESVGTKDITGGLPRVADLFEARKPKEAAILAEISGIVSFGKETKGKRRLVI 1178 Query: 514 -----EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS--------LVNKIQ 404 E + E IP R L V G ++ GAE R+ +VN++Q Sbjct: 1179 TPAEGEAFEEMIPKWRQLNVFEGEMVQRGDIISDGAETPHDILRLRGVHAVTDYIVNEVQ 1238 Query: 403 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES-- 230 +VYR QGV+I+++HIE+I+RQ+ K ++ + + FL GE + + R + A R E Sbjct: 1239 EVYRLQGVKINDKHIEVIVRQMLRKAVIT-NAYDSEFLEGEQVEVARVKIANRKRAEEGK 1297 Query: 229 --IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1298 PLVEFERELLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354 Score = 20.8 bits (42), Expect(2) = 5e-25 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGF 37 K+ +G +IP GTGF Sbjct: 1348 KENVIVGRLIPAGTGF 1363
>RPOC_VIBCH (Q9KV29) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1401 Score = 113 bits (283), Expect(2) = 5e-25 Identities = 93/250 (37%), Positives = 124/250 (49%), Gaps = 43/250 (17%) Frame = -1 Query: 685 ATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------------S 551 A VN G + GD L + + DIT GLP+V +FEAR S Sbjct: 1105 AIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGLPRVADLFEARKPKEPAILAEHSGTVS 1164 Query: 550 IDSLSPNLERRI------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS--------- 422 + R I + + E IP R L V G I IA S Sbjct: 1165 FGKETKGKRRLIITRDSGDTYEEMIPKHRQLNVFEGERIERGDVIADGPESPHDILRLRG 1224 Query: 421 -------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLR 263 + N++Q+VYR QGV+I+++HIE I+RQ+ K ++ G S FLPGE + + Sbjct: 1225 IHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQMLRKCTITFAGDSE-FLPGETVEYSQ 1283 Query: 262 AERAGRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWL 95 + A R L E + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L Sbjct: 1284 VKIANRKLVEEGKEPARFERELLGITKASLATESFISAASFQETTRVLTEAAVSGKRDDL 1343 Query: 94 KGLKENVVXG 65 +GLKENV+ G Sbjct: 1344 RGLKENVIVG 1353 Score = 20.8 bits (42), Expect(2) = 5e-25 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGF 37 K+ +G +IP GTGF Sbjct: 1347 KENVIVGRLIPAGTGF 1362
>RPOC_STRR6 (Q8DNF1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1225 Score = 111 bits (277), Expect(2) = 5e-25 Identities = 82/225 (36%), Positives = 121/225 (53%), Gaps = 44/225 (19%) Frame = -1 Query: 607 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRILG----------V 476 ++DITQGLP+V++IFEAR+ I + + ED + R ++ V Sbjct: 947 NTDITQGLPRVQEIFEARNPKGEAVITEVKGQVTAIEEDASTRTKKVFVKGETGEGEYVV 1006 Query: 475 PWGFLI----------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHN 368 P+ + GA LT + L+ ++QKVYRSQGV+I + Sbjct: 1007 PFTARMRVEVGGQVARGAALTEGSIQPKRLLAVRDVLSVETYLLGEVQKVYRSQGVEIGD 1066 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR----ALDESIYYRAILLGI 200 +HIE+++RQ+ KVRV + G +++ + G L+ + A + A R +L+GI Sbjct: 1067 KHIEVMVRQMIRKVRVMDPGDTDLLM-GTLMDINDFTDANKDVLIAGGVPATGRPVLMGI 1125 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 T+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1126 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIG 1170 Score = 23.1 bits (48), Expect(2) = 5e-25 Identities = 10/28 (35%), Positives = 15/28 (53%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K+ +G IIP GTG ++ + P N Sbjct: 1164 KENVIIGKIIPAGTGMARYRNLEPHAVN 1191
>RPOC_STRPN (Q97NQ8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1225 Score = 111 bits (277), Expect(2) = 5e-25 Identities = 82/225 (36%), Positives = 121/225 (53%), Gaps = 44/225 (19%) Frame = -1 Query: 607 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRILG----------V 476 ++DITQGLP+V++IFEAR+ I + + ED + R ++ V Sbjct: 947 NTDITQGLPRVQEIFEARNPKGEAVITEVKGQVTAIEEDASTRTKKVFVKGETGEGEYVV 1006 Query: 475 PWGFLI----------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHN 368 P+ + GA LT + L+ ++QKVYRSQGV+I + Sbjct: 1007 PFTARMRVEVGGQVARGAALTEGSIQPKRLLAVRDVLSVETYLLGEVQKVYRSQGVEIGD 1066 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR----ALDESIYYRAILLGI 200 +HIE+++RQ+ KVRV + G +++ + G L+ + A + A R +L+GI Sbjct: 1067 KHIEVMVRQMIRKVRVMDPGDTDLLM-GTLMDINDFTDANKDVLIAGGVPATGRPVLMGI 1125 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 T+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1126 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIG 1170 Score = 23.1 bits (48), Expect(2) = 5e-25 Identities = 10/28 (35%), Positives = 15/28 (53%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHRSPQDKN 1 K+ +G IIP GTG ++ + P N Sbjct: 1164 KENVIIGKIIPAGTGMARYRNLEPHAVN 1191
>RPOC_STRT2 (Q5M2F6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1212 Score = 112 bits (280), Expect(2) = 5e-25 Identities = 82/225 (36%), Positives = 123/225 (54%), Gaps = 44/225 (19%) Frame = -1 Query: 607 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRILG----------V 476 ++DITQGLP++++IFEAR+ I + + ED R ++ V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGTVIEIEEDAATRTKKVFVQGKTGMGEYVV 1007 Query: 475 PWGFLIGAEL-------------TIAQSRIS-----------LVNKIQKVYRSQGVQIHN 368 P+ + E+ +I R+ L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVHRGEALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 200 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +LLGI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGVPATSRPVLLGI 1126 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 T+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLIGLKENVIIG 1171 Score = 21.9 bits (45), Expect(2) = 5e-25 Identities = 9/24 (37%), Positives = 14/24 (58%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHRSP 13 K+ +G IIP GTG ++ + P Sbjct: 1165 KENVIIGKIIPAGTGMARYRNIEP 1188
>RPOC_STRT1 (Q5LXV4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1212 Score = 112 bits (280), Expect(2) = 5e-25 Identities = 82/225 (36%), Positives = 123/225 (54%), Gaps = 44/225 (19%) Frame = -1 Query: 607 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRILG----------V 476 ++DITQGLP++++IFEAR+ I + + ED R ++ V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGTVIEIEEDAATRTKKVFVQGKTGMGEYVV 1007 Query: 475 PWGFLIGAEL-------------TIAQSRIS-----------LVNKIQKVYRSQGVQIHN 368 P+ + E+ +I R+ L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVHRGEALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 200 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +LLGI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGVPATSRPVLLGI 1126 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 T+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLIGLKENVIIG 1171 Score = 21.9 bits (45), Expect(2) = 5e-25 Identities = 9/24 (37%), Positives = 14/24 (58%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHRSP 13 K+ +G IIP GTG ++ + P Sbjct: 1165 KENVIIGKIIPAGTGMARYRNIEP 1188
>RPOC_BURS3 (Q39KH4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1414 Score = 113 bits (282), Expect = 7e-25 Identities = 89/257 (34%), Positives = 130/257 (50%), Gaps = 49/257 (19%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE----- 524 GA + G+ + G+ L E ++ DIT GLP+V ++FEARS E Sbjct: 1111 GALITVKDGQQVQVGEVLARIPTEAQKTRDITGGLPRVAELFEARSPKDAGILAEVTGTT 1170 Query: 523 --RRIEDWNER--IPRILGVPWGFLIGAELTIAQSRISLVNK------------------ 410 + +R I + G FLI E + +VNK Sbjct: 1171 SFGKDTKGKQRLVITDLEGNQHEFLIAKEKQVLVHDAQVVNKGEMIVDGPADPHDILRLQ 1230 Query: 409 ------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLL 266 +Q VYR QGV+I+++HIE+I+RQ+ +V+++++G + F+PGE + Sbjct: 1231 GIEALSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQITDNGDTR-FIPGEQV--- 1286 Query: 265 RAERAGRALDES----------IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAL 116 ER+ LDE+ Y +LLGIT+ASL+T SFIS ASFQET RVL +AA+ Sbjct: 1287 --ERSDM-LDENDRMIAEDKRPASYDNVLLGITKASLSTDSFISAASFQETTRVLTEAAI 1343 Query: 115 RGRIDWLKGLKENVVXG 65 G+ D L+GLKENV+ G Sbjct: 1344 MGKRDDLRGLKENVIVG 1360
>RPOC_EHRCJ (Q3YST4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1410 Score = 112 bits (281), Expect(2) = 9e-25 Identities = 86/254 (33%), Positives = 127/254 (50%), Gaps = 46/254 (18%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR--SIDSLSPNLERRI 515 GA +N G+ ++ GD + E ++ DIT GLP+V ++FEAR ++ +++ + Sbjct: 1098 GAVLNVQDGQKVHAGDVITRIPRESIKTRDITGGLPRVIELFEARRPKEHAIVSDIDGYV 1157 Query: 514 E---DWNERIPRILGVPW-GFLIGAELTIAQSRISLVN---------------------- 413 E D+ RI P L E + + + ++VN Sbjct: 1158 EFGKDYYRSKRRIFIKPVDDKLTPVEYLVPKGKHTIVNEGDFVHKGDLLMDGDPDPHDIL 1217 Query: 412 --------------KIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 275 +IQ+VYR QGV+I N+HIEII+RQ+ KV + E G ++L GE I Sbjct: 1218 RVLGVEALANYMISEIQQVYRLQGVRIDNKHIEIILRQMLQKVEIFEPG-DTMYLVGENI 1276 Query: 274 GLLRAERAGRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGR 107 + + ++ Y IL GITRASL+T SF+S ASFQET +VL +AA G+ Sbjct: 1277 DMEEVIKTNNSMVKMGKSPAKYAPILQGITRASLDTNSFVSAASFQETTKVLTEAAFSGK 1336 Query: 106 IDWLKGLKENVVXG 65 D L GLKENV+ G Sbjct: 1337 EDSLYGLKENVIVG 1350 Score = 20.8 bits (42), Expect(2) = 9e-25 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGF 37 K+ +G +IP GTGF Sbjct: 1344 KENVIVGRLIPAGTGF 1359
>RPOC_LACPL (Q88XZ2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 109 bits (272), Expect(2) = 9e-25 Identities = 84/223 (37%), Positives = 120/223 (53%), Gaps = 44/223 (19%) Frame = -1 Query: 601 DITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRI--------------- 485 DITQGLP+V++I E+R+ I ++ +E E+ ER + Sbjct: 948 DITQGLPRVQEIVESRNPKGRAEISEVTGTVELIEENPAERTKEVTVKGETDTRTYTLPL 1007 Query: 484 ---LGVPWGFLI--GAELTIAQ--------------SRISLVNKIQKVYRSQGVQIHNRH 362 + V G I GA L I + L+ ++QKVYR QGV+I ++H Sbjct: 1008 TARMAVSEGDFIHRGAALNIGSIDPKQLIQVRDVLSTENYLLREVQKVYRMQGVEIGDKH 1067 Query: 361 IEIIIRQVTSKVRVSEDGMSNVFLPGELIGL--LRAERAGRALDESI--YYRAILLGITR 194 +EI+IRQ+ KVRV + G ++V LPG L+ + + E + I R ++LGIT+ Sbjct: 1068 VEIMIRQMLRKVRVMDPGDTDV-LPGTLMDIADFKDENYKTLIAGGIPATSRPVILGITK 1126 Query: 193 ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 A+L T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1127 AALETNSFLSAASFQETTRVLTDAAIRGKNDPLIGLKENVIIG 1169 Score = 24.3 bits (51), Expect(2) = 9e-25 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHRSPQD 7 K+ +G IIP GTG + H P++ Sbjct: 1163 KENVIIGKIIPAGTGMPVYRHIKPKE 1188
>RPOC_STRMU (Q8DS47) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1209 Score = 111 bits (277), Expect(2) = 9e-25 Identities = 81/225 (36%), Positives = 120/225 (53%), Gaps = 44/225 (19%) Frame = -1 Query: 607 SSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERIPRIL------------ 482 ++DITQGLP++++IFEAR+ I + + ED R ++ Sbjct: 948 NADITQGLPRIQEIFEARNPKGEAVITEVKGQVTDIEEDAATRTKKVYVKGATGEGEYTV 1007 Query: 481 ----------------GVPW--GFLIGAELTIAQSRIS----LVNKIQKVYRSQGVQIHN 368 G P G + L + +S L+ ++QKVYRSQGV+I + Sbjct: 1008 PFTARMKVQVGDEVHRGAPLTEGSIQPKHLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 200 +H+E+++RQ+ KVRV + G + + LPG L+ + A R + + R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTGL-LPGILMDIADFTDANRDIVIAGGIPATSRPVLMGI 1126 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 T+ASL T SF+S ASFQET RVL AA+RG+ D L GLKENV+ G Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIG 1171 Score = 22.3 bits (46), Expect(2) = 9e-25 Identities = 9/24 (37%), Positives = 14/24 (58%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHRSP 13 K+ +G IIP GTG ++ + P Sbjct: 1165 KENVIIGKIIPAGTGMARYRNLEP 1188
>RPOC_BORPE (Q7W0R8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1414 Score = 112 bits (281), Expect = 9e-25 Identities = 87/251 (34%), Positives = 124/251 (49%), Gaps = 43/251 (17%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE----- 524 GA + G+ + G+ L E ++ DIT GLP+V ++FEARS E Sbjct: 1104 GALITVRDGQQVAVGEVLARIPQESQKTRDITGGLPRVAELFEARSPKDAGMLAEVTGTV 1163 Query: 523 --RRIEDWNER--IPRILGVPWGFLIGAELTIAQSRISLVNK------------------ 410 + +R I + GV FLI E + +VNK Sbjct: 1164 SFGKDTKGKQRLVITDLEGVSHEFLILKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQ 1223 Query: 409 ------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG-- 272 +Q VYR QGV+I+++HIE+I+RQ+ +V + + G + F+PGE + Sbjct: 1224 GIEKLATYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVNIVDPGDTE-FIPGEQVERS 1282 Query: 271 --LLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW 98 L +R Y +LLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D Sbjct: 1283 ELLNENDRVVAEDKRPASYDNVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDD 1342 Query: 97 LKGLKENVVXG 65 L+GLKENV+ G Sbjct: 1343 LRGLKENVIVG 1353
>RPOC_BORPA (Q7W2G8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1414 Score = 112 bits (281), Expect = 9e-25 Identities = 87/251 (34%), Positives = 124/251 (49%), Gaps = 43/251 (17%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE----- 524 GA + G+ + G+ L E ++ DIT GLP+V ++FEARS E Sbjct: 1104 GALITVRDGQQVAVGEVLARIPQESQKTRDITGGLPRVAELFEARSPKDAGMLAEVTGTV 1163 Query: 523 --RRIEDWNER--IPRILGVPWGFLIGAELTIAQSRISLVNK------------------ 410 + +R I + GV FLI E + +VNK Sbjct: 1164 SFGKDTKGKQRLVITDLEGVSHEFLILKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQ 1223 Query: 409 ------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG-- 272 +Q VYR QGV+I+++HIE+I+RQ+ +V + + G + F+PGE + Sbjct: 1224 GIEKLATYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVNIVDPGDTE-FIPGEQVERS 1282 Query: 271 --LLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW 98 L +R Y +LLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D Sbjct: 1283 ELLNENDRVVAEDKRPASYDNVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDD 1342 Query: 97 LKGLKENVVXG 65 L+GLKENV+ G Sbjct: 1343 LRGLKENVIVG 1353
>RPOC_BORBR (Q7WRD8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1414 Score = 112 bits (281), Expect = 9e-25 Identities = 87/251 (34%), Positives = 124/251 (49%), Gaps = 43/251 (17%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE----- 524 GA + G+ + G+ L E ++ DIT GLP+V ++FEARS E Sbjct: 1104 GALITVRDGQQVAVGEVLARIPQESQKTRDITGGLPRVAELFEARSPKDAGMLAEVTGTV 1163 Query: 523 --RRIEDWNER--IPRILGVPWGFLIGAELTIAQSRISLVNK------------------ 410 + +R I + GV FLI E + +VNK Sbjct: 1164 SFGKDTKGKQRLVITDLEGVSHEFLILKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQ 1223 Query: 409 ------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG-- 272 +Q VYR QGV+I+++HIE+I+RQ+ +V + + G + F+PGE + Sbjct: 1224 GIEKLATYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVNIVDPGDTE-FIPGEQVERS 1282 Query: 271 --LLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW 98 L +R Y +LLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D Sbjct: 1283 ELLNENDRVVAEDKRPASYDNVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDD 1342 Query: 97 LKGLKENVVXG 65 L+GLKENV+ G Sbjct: 1343 LRGLKENVIVG 1353
>RPOC_LACJO (Q74L94) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1224 Score = 112 bits (279), Expect(2) = 1e-24 Identities = 80/225 (35%), Positives = 121/225 (53%), Gaps = 44/225 (19%) Frame = -1 Query: 607 SSDITQGLPKVEQIFEAR----------------SIDSLSPNLERRIEDWNERIPRILGV 476 ++DITQGLP+V+++FEAR SI+ R+I + R V Sbjct: 948 AADITQGLPRVQELFEARNPKGRATISEVTGEVTSIEEDPAEHTRQITVKGQTDTRTYDV 1007 Query: 475 PWGFLI----------GAELTIAQ--------------SRISLVNKIQKVYRSQGVQIHN 368 P+ + G +LT+ + ++++IQK YR QGV+I + Sbjct: 1008 PYTASVAVAEGDHVVRGDKLTLGSIDPKELIRVRDALTTEKYILSEIQKAYRMQGVEIAD 1067 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGEL--IGLLRAERAGRALDESIYYRA--ILLGI 200 +H+E++ RQ+ KVR+ + G +++ LPGEL IG +A + I A ++LGI Sbjct: 1068 KHVEVMARQMLQKVRILDPGETDI-LPGELMDIGEFKARNREVIISGGIPATAQSVILGI 1126 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 T+A+L T SF+S ASFQET RVL A++RG+ D L GLKENV+ G Sbjct: 1127 TKAALETNSFLSAASFQETTRVLTDASIRGKNDPLLGLKENVIIG 1171 Score = 21.2 bits (43), Expect(2) = 1e-24 Identities = 9/25 (36%), Positives = 13/25 (52%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHRSPQ 10 K+ +G IIP GTG + P+ Sbjct: 1165 KENVIIGKIIPAGTGMPVYREMEPK 1189
>RPOC2_CHLVU (P12465) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1562 Score = 112 bits (280), Expect = 1e-24 Identities = 66/199 (33%), Positives = 117/199 (58%), Gaps = 7/199 (3%) Frame = -1 Query: 661 EILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSI---DSLSPNLERRIEDWNERIP 491 ++L K L+T ++ ++ DI QG+PK+EQ+FEAR + + N+ R+ + Sbjct: 1353 DLLQKNHILMTLRSKQLQTEDIVQGIPKIEQLFEARETKDGEIIRYNMHFRLNSFFSLAK 1412 Query: 490 RILGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSED 311 R+ FL +L++ + LV + + Y +QGV I +H+E+++RQ+T++VR++ Sbjct: 1413 RVKP----FLEAFDLSLLYIQRFLVKTLLEAYSNQGVNIAEKHVEVVVRQMTARVRITF- 1467 Query: 310 GMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGITRASLNTQSFISEASFQET 143 G LPGE I L E R+L E+ Y ++LG+T++ L ++SF+ ASFQ+ Sbjct: 1468 GKDTSLLPGEFIQLRLLEEINRSLVEAKKEPALYEPVILGLTKSVLQSESFLLAASFQQV 1527 Query: 142 ARVLAKAALRGRIDWLKGL 86 ++VL ++AL + D+L+GL Sbjct: 1528 SKVLVRSALATKTDFLRGL 1546
>RPOC_BRAJA (Q89J75) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1398 Score = 112 bits (280), Expect = 1e-24 Identities = 86/258 (33%), Positives = 130/258 (50%), Gaps = 46/258 (17%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSID-------- 545 + + A ++ G + GD L E +++ DIT GLP+V ++FEAR Sbjct: 1092 MLSVDAILSVDIGAKVAPGDILARVSTESAKTRDITGGLPRVAELFEARRPKDAAIIAEI 1151 Query: 544 ----------------SLSPNLERRIEDWNERIPR------------------ILGVPWG 467 S+ P +++ E IP+ + G P Sbjct: 1152 AGTIRFGRDYKNKRRISIEP-MDKTDEPREYLIPKGKHIHLQDGDVVEKGDFIVEGNPAP 1210 Query: 466 FLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLP 287 I A I + LVN+IQ+VYR QGV I+++HIE+I+RQ+ KV V++ G +++ + Sbjct: 1211 HDILAVKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEVTDQGDTDM-IS 1269 Query: 286 GELIGLLRAERAGRALDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAA 119 GE + + + E A +LLGIT+ASL T+SF S ASFQET RVL +AA Sbjct: 1270 GEQVDKIEFDALNEKAKEEGKKIATGTPVLLGITKASLQTRSFFSAASFQETTRVLTEAA 1329 Query: 118 LRGRIDWLKGLKENVVXG 65 + G++D L+GLKENV+ G Sbjct: 1330 VNGKVDPLEGLKENVIVG 1347
>RPOC_XANOR (Q8KTH8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 112 bits (280), Expect = 1e-24 Identities = 93/248 (37%), Positives = 124/248 (50%), Gaps = 43/248 (17%) Frame = -1 Query: 679 VNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR------ 518 VN G + GD + E S++ DIT GLP+V +FEAR + ER Sbjct: 1109 VNLQDGAAVGVGDVVAKIPQEASKTRDITGGLPRVADLFEARKPKDPAILAERSGIISFG 1168 Query: 517 ----------IEDWN-----ERIPR------------------ILGVPWGFLIGAELTIA 437 I+D + E IP+ + G P I L + Sbjct: 1169 KDTKGKQRLIIKDTDGSEHEELIPKYRQIIVFEGEHVTKGETVVDGEPSPQDILRLLGVE 1228 Query: 436 QSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA- 260 LV +IQ VYR QGV+I+++HIE+I RQ+ KV + + G S FL GE + R Sbjct: 1229 PLAAYLVKEIQDVYRLQGVKINDKHIEVITRQMLRKVEIVDQGNSK-FLNGEQVERQRVI 1287 Query: 259 ERAGRALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKG 89 E R + + Y +LLGIT+ASL T+SFIS ASFQET RVL +AA+RG D L+G Sbjct: 1288 EENARLVKRNELPAKYDPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLRG 1347 Query: 88 LKENVVXG 65 LKENV+ G Sbjct: 1348 LKENVIVG 1355
>RPOC_XANC5 (Q3BWZ0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 112 bits (280), Expect = 1e-24 Identities = 93/248 (37%), Positives = 124/248 (50%), Gaps = 43/248 (17%) Frame = -1 Query: 679 VNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR------ 518 VN G + GD + E S++ DIT GLP+V +FEAR + ER Sbjct: 1108 VNLQDGAAVGVGDVVAKIPQEASKTRDITGGLPRVADLFEARKPKDPAILAERSGIISFG 1167 Query: 517 ----------IEDWN-----ERIPR------------------ILGVPWGFLIGAELTIA 437 I+D + E IP+ + G P I L + Sbjct: 1168 KDTKGKQRLIIKDTDGSEHEELIPKYRQIIVFEGEHVTKGETVVDGEPSPQDILRLLGVE 1227 Query: 436 QSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA- 260 LV +IQ VYR QGV+I+++HIE+I RQ+ KV + + G S FL GE + R Sbjct: 1228 PLAAYLVKEIQDVYRLQGVKINDKHIEVITRQMLRKVEIVDQGNSK-FLNGEQVERQRVI 1286 Query: 259 ERAGRALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKG 89 E R + + Y +LLGIT+ASL T+SFIS ASFQET RVL +AA+RG D L+G Sbjct: 1287 EENARLVKRNELPAKYDPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLRG 1346 Query: 88 LKENVVXG 65 LKENV+ G Sbjct: 1347 LKENVIVG 1354
>RPOC_XANAC (Q8PNS9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 112 bits (280), Expect = 1e-24 Identities = 93/248 (37%), Positives = 124/248 (50%), Gaps = 43/248 (17%) Frame = -1 Query: 679 VNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERR------ 518 VN G + GD + E S++ DIT GLP+V +FEAR + ER Sbjct: 1108 VNLQDGAAVGVGDVVAKIPQEASKTRDITGGLPRVADLFEARKPKDPAILAERSGIISFG 1167 Query: 517 ----------IEDWN-----ERIPR------------------ILGVPWGFLIGAELTIA 437 I+D + E IP+ + G P I L + Sbjct: 1168 KDTKGKQRLIIKDTDGSEHEELIPKYRQIIVFEGEHVTKGETVVDGEPSPQDILRLLGVE 1227 Query: 436 QSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA- 260 LV +IQ VYR QGV+I+++HIE+I RQ+ KV + + G S FL GE + R Sbjct: 1228 PLAAYLVKEIQDVYRLQGVKINDKHIEVITRQMLRKVEIVDQGNSK-FLNGEQVERQRVI 1286 Query: 259 ERAGRALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKG 89 E R + + Y +LLGIT+ASL T+SFIS ASFQET RVL +AA+RG D L+G Sbjct: 1287 EENARLVKRNELPAKYDPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLRG 1346 Query: 88 LKENVVXG 65 LKENV+ G Sbjct: 1347 LKENVIVG 1354
>RPOC_BUCAI (P57145) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 112 bits (280), Expect = 1e-24 Identities = 90/244 (36%), Positives = 124/244 (50%), Gaps = 44/244 (18%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE------------- 524 G + GD L E + DIT GLP+V +FEAR L+ E Sbjct: 1112 GVQISSGDTLARVPQESGGTKDITGGLPRVADLFEARRPKELAILAEISGIISFGKETKG 1171 Query: 523 -RRI--------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS--------------- 422 RR+ + + E IP R L V G + I+ S Sbjct: 1172 KRRLVITPVDGSDSYEEMIPKWRQLNVFEGERVDRGDVISDGPESPHDILRLRGVQAVTR 1231 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 +VN++Q+VYR QGV+I+++HIE+IIRQ+ K V + S+ FL GE + + + R Sbjct: 1232 YIVNEVQEVYRLQGVKINDKHIEVIIRQMLRKATVVKSRDSD-FLEGEQVEFSHIKISNR 1290 Query: 244 ALDESIYYRAI----LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKEN 77 LD+ A LLGIT+ASL T+SFIS ASFQET RVL ++A+ G+ D L+GLKEN Sbjct: 1291 MLDKKKKMPATFSRDLLGITKASLATESFISAASFQETTRVLTESAVAGKRDELRGLKEN 1350 Query: 76 VVXG 65 V+ G Sbjct: 1351 VIVG 1354
>RPOC_CLOTE (Q890N5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1135 Score = 112 bits (280), Expect = 1e-24 Identities = 78/216 (36%), Positives = 120/216 (55%), Gaps = 44/216 (20%) Frame = -1 Query: 604 SDITQGLPKVEQIFEARSIDSLSPNLE-----RRIEDWNERIPRILG--------VPWGF 464 SDITQGLP+VE++FEAR L+ E R E +R ++G +P+G Sbjct: 924 SDITQGLPRVEELFEARKPKGLAIVSEINGTIRIDETKKKRTVVVIGETEEISYDIPFGS 983 Query: 463 --------LIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHNRHIE 356 +I A I + ++ L++++QKVYR QGV I+++H+E Sbjct: 984 RLKVSNGDVISAGDEITEGSVNPHDVLRIKGPNGVKNYLLSEVQKVYRLQGVDINDKHLE 1043 Query: 355 IIIRQVTSKVRVSEDGMSNVFLPGELIGLL-------RAERAGRALDESIYYRAILLGIT 197 +++RQ+T K+++ E G + FLPG ++ + +AE G+ E+ R LLGIT Sbjct: 1044 VVVRQMTRKIKIEESGDTE-FLPGTMVDIFDFQEENAKAEEEGK---ETAKGRITLLGIT 1099 Query: 196 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKG 89 +A+L T SF+S ASFQET RVL AA++G++D L G Sbjct: 1100 KAALATDSFLSSASFQETTRVLTDAAIKGKVDPLLG 1135
>RPOC_NOCFA (Q5YPE1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1317 Score = 112 bits (279), Expect(2) = 1e-24 Identities = 82/234 (35%), Positives = 114/234 (48%), Gaps = 55/234 (23%) Frame = -1 Query: 601 DITQGLPKVEQIFEARS-------------------------------------IDSLSP 533 DIT GLP+V+++FEAR D LS Sbjct: 1023 DITGGLPRVQELFEARVPKGKAPIAEVSGRVRLEDDDRFYKITIIPDDGGEEVVYDKLSK 1082 Query: 532 NLERRIEDWNERIPRILGVPWGFLIGAELTIA--------------QSRISLVNKIQKVY 395 R+ ++ R+L +G +L Q ++ LV+++Q+VY Sbjct: 1083 RQRLRVFKHDDGTERLLSDGDHVEVGQQLLEGAADPHEVLRVMGPRQVQVHLVHEVQEVY 1142 Query: 394 RSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESI 227 RSQGV IH++HIE+I+RQ+ +V + + G S FLPG L E A R + E Sbjct: 1143 RSQGVSIHDKHIEVIVRQMLRRVTIIDSG-STEFLPGSLTERAEFEAANRRVVAEGGEPA 1201 Query: 226 YYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 R +L+GIT+ASL T S++S ASFQET RVL AA+ R D L GLKENV+ G Sbjct: 1202 SGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIGLKENVIIG 1255 Score = 20.8 bits (42), Expect(2) = 1e-24 Identities = 7/19 (36%), Positives = 12/19 (63%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTG ++ Sbjct: 1249 KENVIIGKLIPAGTGINRY 1267
>RPOC_THIDA (Q3SLQ5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1398 Score = 112 bits (279), Expect = 1e-24 Identities = 88/251 (35%), Positives = 126/251 (50%), Gaps = 43/251 (17%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE----- 524 G+ + G+ + GD L E S++ DIT GLP+V ++FEARS E Sbjct: 1105 GSIITVKDGQDVAVGDVLARIPQETSKTRDITGGLPRVAELFEARSPKDAGVLAEVTGTV 1164 Query: 523 --RRIEDWNER--IPRILGVPWGFLIGAELTIAQSRISLVNK------------------ 410 + +R I + GV +LI E + +V K Sbjct: 1165 SFGKDTKGKQRLVITDLDGVAHEYLITKEKHVTAHDGQIVQKGEMIVDGPVDPHDILRLQ 1224 Query: 409 ------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG-- 272 +Q VYR QGV+I+++HIE+I+RQ+ +V V++ G + + +PGE + Sbjct: 1225 GVEALASYITDEVQDVYRLQGVKINDKHIEVIVRQMLRRVVVADPGDTGL-IPGEQVERS 1283 Query: 271 --LLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW 98 L + A E Y ILLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D Sbjct: 1284 EVLQINDEMIAAGKEPAVYDPILLGITKASLSTDSFISAASFQETTRVLTEAAIMGKKDE 1343 Query: 97 LKGLKENVVXG 65 L+GLKENV+ G Sbjct: 1344 LRGLKENVIVG 1354
>RPOC_BACSU (P37871) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1199 Score = 112 bits (279), Expect = 1e-24 Identities = 80/224 (35%), Positives = 119/224 (53%), Gaps = 45/224 (20%) Frame = -1 Query: 601 DITQGLPKVEQIFEARSIDSLSPNLE--------RRIED-------------------WN 503 DITQGLP+++++FEAR+ + E + D +N Sbjct: 948 DITQGLPRIQELFEARNPKGQATITEIDGTVVEINEVRDKQQEIVVQGAVETRSYTAPYN 1007 Query: 502 ERIPRILGV--------------PWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNR 365 R+ G P L +LT Q L++++QKVYR QGV+I ++ Sbjct: 1008 SRLKVAEGDKITRGQVLTGGSIDPKELLKVTDLTTVQEY--LLHEVQKVYRMQGVEIGDK 1065 Query: 364 HIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGIT 197 H+E+++RQ+ KVRV + G ++V LPG L+ + + A + + + R +LLGIT Sbjct: 1066 HVEVMVRQMLRKVRVIDAGDTDV-LPGTLLDIHQFTEANKKVLLEGNRPATGRPVLLGIT 1124 Query: 196 RASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 +ASL T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1125 KASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIG 1168
>RPOC_MYCLE (P30761) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 111 bits (278), Expect(2) = 2e-24 Identities = 84/235 (35%), Positives = 117/235 (49%), Gaps = 56/235 (23%) Frame = -1 Query: 601 DITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNERIPRILGVP------------- 473 DIT GLP+V+++FEAR +P + R+ED ER +I VP Sbjct: 1023 DITGGLPRVQELFEARVPRGKAPIADVTGRVRLED-GERFYKITIVPDDGGEEVVYDKLS 1081 Query: 472 -------WGFLIGAELTIAQS----------------------------RISLVNKIQKV 398 + G+E ++ +I LV ++Q+V Sbjct: 1082 KRQRLRVFKHADGSERVLSDGDYVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQEV 1141 Query: 397 YRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DES 230 YR+QGV IH++HIE+I+RQ+ +V + + G S FLPG LI E R + E Sbjct: 1142 YRAQGVSIHDKHIEVIVRQMLRRVTIIDSG-STEFLPGSLIDRAEFESENRRVVAESGEP 1200 Query: 229 IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 R +L+GIT+ASL T S++S ASFQET RVL AA+ R D L GLKENV+ G Sbjct: 1201 AAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIG 1255 Score = 20.8 bits (42), Expect(2) = 2e-24 Identities = 7/19 (36%), Positives = 12/19 (63%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTG ++ Sbjct: 1249 KENVIIGKLIPAGTGINRY 1267
>RPOC_BURPS (Q63Q04) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1412 Score = 111 bits (278), Expect = 2e-24 Identities = 88/257 (34%), Positives = 132/257 (51%), Gaps = 49/257 (19%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL 527 GA + G+ + G+ L E ++ DIT GLP+V ++FEARS + ++ + Sbjct: 1111 GALITVKDGQQVQVGEVLARIPTESQKTRDITGGLPRVAELFEARSPKDAGILAEVTGTV 1170 Query: 526 ERRIEDWNER---IPRILGVPWGFLIGAELTIAQSRISLVNK------------------ 410 + ++ I + G FLI E + +VNK Sbjct: 1171 SFGKDTKGKQRLVITDLEGNQHEFLIAKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQ 1230 Query: 409 ------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLL 266 +Q VYR QGV+I+++HIE+I+RQ+ +V++ ++G + F+PGE Sbjct: 1231 GIEALSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQIVDNGDTR-FIPGE----- 1284 Query: 265 RAERAGRALDES----------IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAL 116 + ER+ LDE+ Y ILLGIT+ASL+T SFIS ASFQET RVL +AA+ Sbjct: 1285 QVERSD-MLDENDRMIAEDKRPATYDNILLGITKASLSTDSFISAASFQETTRVLTEAAI 1343 Query: 115 RGRIDWLKGLKENVVXG 65 G+ D L+GLKENV+ G Sbjct: 1344 MGKRDDLRGLKENVIVG 1360
>RPOC_BURP1 (Q3JMQ4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1412 Score = 111 bits (278), Expect = 2e-24 Identities = 88/257 (34%), Positives = 132/257 (51%), Gaps = 49/257 (19%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL 527 GA + G+ + G+ L E ++ DIT GLP+V ++FEARS + ++ + Sbjct: 1111 GALITVKDGQQVQVGEVLARIPTESQKTRDITGGLPRVAELFEARSPKDAGILAEVTGTV 1170 Query: 526 ERRIEDWNER---IPRILGVPWGFLIGAELTIAQSRISLVNK------------------ 410 + ++ I + G FLI E + +VNK Sbjct: 1171 SFGKDTKGKQRLVITDLEGNQHEFLIAKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQ 1230 Query: 409 ------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLL 266 +Q VYR QGV+I+++HIE+I+RQ+ +V++ ++G + F+PGE Sbjct: 1231 GIEALSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQIVDNGDTR-FIPGE----- 1284 Query: 265 RAERAGRALDES----------IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAL 116 + ER+ LDE+ Y ILLGIT+ASL+T SFIS ASFQET RVL +AA+ Sbjct: 1285 QVERSD-MLDENDRMIAEDKRPATYDNILLGITKASLSTDSFISAASFQETTRVLTEAAI 1343 Query: 115 RGRIDWLKGLKENVVXG 65 G+ D L+GLKENV+ G Sbjct: 1344 MGKRDDLRGLKENVIVG 1360
>RPOC_BURMA (Q62GJ7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1412 Score = 111 bits (278), Expect = 2e-24 Identities = 88/257 (34%), Positives = 132/257 (51%), Gaps = 49/257 (19%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL 527 GA + G+ + G+ L E ++ DIT GLP+V ++FEARS + ++ + Sbjct: 1111 GALITVKDGQQVQVGEVLARIPTESQKTRDITGGLPRVAELFEARSPKDAGILAEVTGTV 1170 Query: 526 ERRIEDWNER---IPRILGVPWGFLIGAELTIAQSRISLVNK------------------ 410 + ++ I + G FLI E + +VNK Sbjct: 1171 SFGKDTKGKQRLVITDLEGNQHEFLIAKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQ 1230 Query: 409 ------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLL 266 +Q VYR QGV+I+++HIE+I+RQ+ +V++ ++G + F+PGE Sbjct: 1231 GIEALSRYIVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQIVDNGDTR-FIPGE----- 1284 Query: 265 RAERAGRALDES----------IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAL 116 + ER+ LDE+ Y ILLGIT+ASL+T SFIS ASFQET RVL +AA+ Sbjct: 1285 QVERSD-MLDENDRMIAEDKRPATYDNILLGITKASLSTDSFISAASFQETTRVLTEAAI 1343 Query: 115 RGRIDWLKGLKENVVXG 65 G+ D L+GLKENV+ G Sbjct: 1344 MGKRDDLRGLKENVIVG 1360
>RPOC_BACLD (Q65PB4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1199 Score = 111 bits (278), Expect = 2e-24 Identities = 81/222 (36%), Positives = 119/222 (53%), Gaps = 43/222 (19%) Frame = -1 Query: 601 DITQGLPKVEQIFEARS---------IDSL--------------------------SPNL 527 DITQGLP+++++FEAR+ ID + +P Sbjct: 948 DITQGLPRIQELFEARNPKGQATISEIDGVVAEINEVRDKQQEIVVQGEVESRSYTAPYN 1007 Query: 526 ERRIEDWNERIPRILGVPWGFLIGAELT----IAQSRISLVNKIQKVYRSQGVQIHNRHI 359 R E+I R + G + EL I + L++++QKVYR QGV+I ++H+ Sbjct: 1008 ARLKVTEGEKISRGQVLTEGSVDPKELLKVTDITTVQEYLLHEVQKVYRMQGVEIGDKHV 1067 Query: 358 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRA 191 E+++RQ+ KVRV + G + V LPG L+ + + A + + R +LLGIT+A Sbjct: 1068 EVMVRQMLRKVRVIDAGDTEV-LPGTLLDIHQFTEANKKVLLEGKRPATGRPVLLGITKA 1126 Query: 190 SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 SL T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1127 SLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIG 1168
>RPOC_RHIME (Q92QH6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1401 Score = 111 bits (278), Expect = 2e-24 Identities = 84/245 (34%), Positives = 128/245 (52%), Gaps = 45/245 (18%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPNL-------- 527 G+ + +GD L E +++ DIT GLP+V ++FEAR I + + Sbjct: 1105 GQKVSQGDVLARSPLESAKTKDITGGLPRVAELFEARRPKDHAIIAEIDGTIRFGRDYKN 1164 Query: 526 ERRI-----EDWNERIPRIL----------------------GVPWGFLIGAELTIAQSR 428 +RR+ ED E + ++ G P I A + Sbjct: 1165 KRRVMIEPAEDGVEPVEYLIPKGKPFHLQDGDYIEKGDYILDGNPAPHDILAIKGVEALA 1224 Query: 427 ISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG 248 LVN+IQ+VYR QGV I+++HIE+I+RQ+ KV +++ G S ++ G+ + + E Sbjct: 1225 SYLVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVEITDAGDST-YIVGDNVDRIELEDVN 1283 Query: 247 RAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKE 80 +L + + +LLGIT+ASL T SFIS ASFQET +VL +AA+ G+ D L+GLKE Sbjct: 1284 DSLLAEGKKPAFGEPVLLGITKASLQTPSFISAASFQETTKVLTEAAVAGKTDNLQGLKE 1343 Query: 79 NVVXG 65 NV+ G Sbjct: 1344 NVIVG 1348
>RPOC_XYLFT (Q87A33) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 111 bits (278), Expect = 2e-24 Identities = 92/243 (37%), Positives = 121/243 (49%), Gaps = 49/243 (20%) Frame = -1 Query: 646 GDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------------SIDSLSPNLERRI- 515 GD + E S++ DIT GLP+V +FEAR S + +R I Sbjct: 1119 GDVVAKIPQEASKTRDITGGLPRVADLFEARRPKDPAILAERSGVISFGKDTKGKQRLII 1178 Query: 514 -----EDWNERIPR------------------ILGVPWGFLIGAELTIAQSRISLVNKIQ 404 + E IP+ + G P I L I LV +IQ Sbjct: 1179 KDADGSEHEELIPKYRQIIVFEGEHVTKGETIVDGEPSPQDILRLLGIEPLAAYLVKEIQ 1238 Query: 403 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIY 224 VYR QGV+I+++HIE+I RQ+ KV + + G S FL GE + ER R +DE+ Sbjct: 1239 DVYRLQGVKINDKHIEVITRQMLRKVEIVDQGNSK-FLNGEQV-----ERQ-RVIDENAK 1291 Query: 223 ----------YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 Y +LLGIT+ASL T+SFIS ASFQET RVL +AA+RG D L+GLKENV Sbjct: 1292 LIARNELPAKYNPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLRGLKENV 1351 Query: 73 VXG 65 + G Sbjct: 1352 IVG 1354
>RPOC_XYLFA (Q9PA87) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 111 bits (278), Expect = 2e-24 Identities = 92/243 (37%), Positives = 121/243 (49%), Gaps = 49/243 (20%) Frame = -1 Query: 646 GDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------------SIDSLSPNLERRI- 515 GD + E S++ DIT GLP+V +FEAR S + +R I Sbjct: 1119 GDVVAKIPQEASKTRDITGGLPRVADLFEARRPKDPAILAERSGVISFGKDTKGKQRLII 1178 Query: 514 -----EDWNERIPR------------------ILGVPWGFLIGAELTIAQSRISLVNKIQ 404 + E IP+ + G P I L I LV +IQ Sbjct: 1179 KDADGSEHEELIPKYRQIIVFEGEHVTKGETIVDGEPSPQDILRLLGIEPLAAYLVKEIQ 1238 Query: 403 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIY 224 VYR QGV+I+++HIE+I RQ+ KV + + G S FL GE + ER R +DE+ Sbjct: 1239 DVYRLQGVKINDKHIEVITRQMLRKVEIVDQGNSK-FLNGEQV-----ERQ-RVIDENAK 1291 Query: 223 ----------YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 Y +LLGIT+ASL T+SFIS ASFQET RVL +AA+RG D L+GLKENV Sbjct: 1292 LIARNELPAKYNPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLRGLKENV 1351 Query: 73 VXG 65 + G Sbjct: 1352 IVG 1354
>RPOC_ERWCT (Q6DAM9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 111 bits (278), Expect = 2e-24 Identities = 88/238 (36%), Positives = 123/238 (51%), Gaps = 44/238 (18%) Frame = -1 Query: 646 GDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE--RRI-- 515 GD L E S + DIT GLP+V +FEAR I S + RR+ Sbjct: 1118 GDTLARLPQESSGTKDITGGLPRVADLFEARRPKEPAILAEISGIISFGKETKGKRRLVI 1177 Query: 514 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 407 + + E IP R L V G ++ ++ S + N++ Sbjct: 1178 SPLDGSDAYEEMIPKWRQLNVFEGEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEV 1237 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDE-- 233 Q+VYR QGV+I+++HIE+I+RQ+ K + G S FL GE + R + A R L+ Sbjct: 1238 QEVYRLQGVKINDKHIEVIVRQMLRKGTIVSAG-STEFLEGEQAEMSRIKIANRKLEADG 1296 Query: 232 --SIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1297 KITATFSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354
>RPOC_PASMU (Q9CK92) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1417 Score = 110 bits (275), Expect(2) = 2e-24 Identities = 88/237 (37%), Positives = 125/237 (52%), Gaps = 43/237 (18%) Frame = -1 Query: 646 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------------IDSLSPNLE--RRI-- 515 G+ L E + DIT GLP+V +FEAR I S + RR+ Sbjct: 1119 GEPLARIPQESVGTKDITGGLPRVADLFEARKPKEPAILAEISGIVSFGKETKGKRRLLI 1178 Query: 514 -----EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS--------LVNKIQ 404 E + E IP R L V G ++ GAE R+ +VN++Q Sbjct: 1179 TPAEGETYEEMIPKWRQLNVFEGEMVERGDLISDGAETPHDILRLRGVHAVTEYIVNEVQ 1238 Query: 403 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES-- 230 +VYR QGV+I+++HIE+I+RQ+ K V++ + FL GE + + R + R + Sbjct: 1239 EVYRLQGVKINDKHIEVIVRQMLRKGIVTK-AYDSEFLEGEQVEVARVKIVNRKREAEGK 1297 Query: 229 --IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1298 PLVEFERELLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354 Score = 21.6 bits (44), Expect(2) = 2e-24 Identities = 11/27 (40%), Positives = 16/27 (59%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHRSPQDK 4 K+ +G +IP GTGF H++ Q K Sbjct: 1348 KENVIVGRLIPAGTGFA--YHQNRQKK 1372
>RPOC_MYCPA (Q73SE3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 111 bits (277), Expect(2) = 2e-24 Identities = 81/234 (34%), Positives = 112/234 (47%), Gaps = 55/234 (23%) Frame = -1 Query: 601 DITQGLPKVEQIFEARS-------------------------------------IDSLSP 533 DIT GLP+V+++FEAR D LS Sbjct: 1023 DITGGLPRVQELFEARIPRGKAPIADVTGRVRLEDGERFYKITIVPDDGSEEVVYDKLSK 1082 Query: 532 NLERRIEDWNERIPRILGVPWGFLIGAELTIAQS--------------RISLVNKIQKVY 395 R+ + R+L +G +L + +I LV ++Q+VY Sbjct: 1083 RQRLRVFKHEDGSERVLSDGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLVREVQEVY 1142 Query: 394 RSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESI 227 R+QGV IH++HIE+I+RQ+ +V + + G S FLPG LI E R + E Sbjct: 1143 RAQGVSIHDKHIEVIVRQMLRRVTIIDSG-STEFLPGSLIDRAEFEAENRRVVAEGGEPA 1201 Query: 226 YYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 R +L+GIT+ASL T S++S ASFQET RVL AA+ R D L GLKENV+ G Sbjct: 1202 AGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLKENVIIG 1255 Score = 20.8 bits (42), Expect(2) = 2e-24 Identities = 7/19 (36%), Positives = 12/19 (63%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTG ++ Sbjct: 1249 KENVIIGKLIPAGTGINRY 1267
>RPOC_YERPS (Q66FQ1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 111 bits (277), Expect = 3e-24 Identities = 89/239 (37%), Positives = 126/239 (52%), Gaps = 45/239 (18%) Frame = -1 Query: 646 GDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE--RRI-- 515 GD L E S + DIT GLP+V +FEAR I S + RR+ Sbjct: 1118 GDTLARIPQESSGTKDITGGLPRVADLFEARRPKEPAILAEISGIISFGKETKGKRRLVI 1177 Query: 514 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 407 + + E IP R L V G ++ ++ S + N++ Sbjct: 1178 SPLDGSDAYEEMIPKWRQLNVFEGEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEV 1237 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALD--- 236 Q+VYR QGV+I+++HIE+I+RQ+ K + + G ++ FL GE + R + A R L Sbjct: 1238 QEVYRLQGVKINDKHIEVIVRQMLRKGTIVDAGSTD-FLEGEQAEMSRVKIANRKLAAEG 1296 Query: 235 --ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 E+ + R LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1297 KIEATFTRD-LLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354
>RPOC_YERPE (Q8D1H3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 111 bits (277), Expect = 3e-24 Identities = 89/239 (37%), Positives = 126/239 (52%), Gaps = 45/239 (18%) Frame = -1 Query: 646 GDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE--RRI-- 515 GD L E S + DIT GLP+V +FEAR I S + RR+ Sbjct: 1118 GDTLARIPQESSGTKDITGGLPRVADLFEARRPKEPAILAEISGIISFGKETKGKRRLVI 1177 Query: 514 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 407 + + E IP R L V G ++ ++ S + N++ Sbjct: 1178 SPLDGSDAYEEMIPKWRQLNVFEGEVVERGDVVSDGPESPHDILRLRGVHAVTRYITNEV 1237 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALD--- 236 Q+VYR QGV+I+++HIE+I+RQ+ K + + G ++ FL GE + R + A R L Sbjct: 1238 QEVYRLQGVKINDKHIEVIVRQMLRKGTIVDAGSTD-FLEGEQAEMSRVKIANRKLAAEG 1296 Query: 235 --ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 E+ + R LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1297 KIEATFTRD-LLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354
>RPOC_HAEI8 (Q4QN34) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1416 Score = 110 bits (276), Expect(2) = 3e-24 Identities = 88/243 (36%), Positives = 126/243 (51%), Gaps = 43/243 (17%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------------IDSLSPNLE- 524 G + G+ L E + DIT GLP+V +FEAR I S + Sbjct: 1113 GAAVKVGEPLARIPQESVGTKDITGGLPRVADLFEARKPKEPAILAEISGIVSFGKETKG 1172 Query: 523 -RRI-------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS-------- 422 RR+ E + E IP R L V G ++ GAE R+ Sbjct: 1173 KRRLLITPAEGETYEEMIPKWRQLNVFEGEMVQRGDVISDGAETPHDILRLRGVRAVTEY 1232 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 +VN++Q VYR QGV+I+++HIE+I+RQ+ K +++ + FL GE + + R + R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKAVITK-AYDSEFLEGEQVEVARVKIVNRQ 1291 Query: 241 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 + + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1292 REAEGKPPVEFERELLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 73 VXG 65 + G Sbjct: 1352 IVG 1354 Score = 20.8 bits (42), Expect(2) = 3e-24 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGF 37 K+ +G +IP GTGF Sbjct: 1348 KENVIVGRLIPAGTGF 1363
>RPOC_HAEIN (P43739) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1415 Score = 110 bits (276), Expect(2) = 3e-24 Identities = 88/243 (36%), Positives = 126/243 (51%), Gaps = 43/243 (17%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------------IDSLSPNLE- 524 G + G+ L E + DIT GLP+V +FEAR I S + Sbjct: 1113 GTAVKVGEPLARIPQESVGTKDITGGLPRVADLFEARKPKEPAILAEISGIVSFGKETKG 1172 Query: 523 -RRI-------EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS-------- 422 RR+ E + E IP R L V G ++ GAE R+ Sbjct: 1173 KRRLLITPAEGETYEEMIPKWRQLNVFEGEMVQRGDVISDGAETPHDILRLRGVRAVTEY 1232 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 +VN++Q VYR QGV+I+++HIE+I+RQ+ K +++ + FL GE + + R + R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKAVITK-AYDSEFLEGEQVEVARVKIVNRQ 1291 Query: 241 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 + + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV Sbjct: 1292 REAEGKPPVEFERELLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 73 VXG 65 + G Sbjct: 1352 IVG 1354 Score = 20.8 bits (42), Expect(2) = 3e-24 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGF 37 K+ +G +IP GTGF Sbjct: 1348 KENVIVGRLIPAGTGF 1363
>RPOC_WIGBR (Q8D232) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 110 bits (276), Expect = 3e-24 Identities = 90/242 (37%), Positives = 121/242 (50%), Gaps = 42/242 (17%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR------------SIDSLSPNLE- 524 G + GD L E S DIT GLP+V +FEAR I S + Sbjct: 1112 GTKINSGDVLARLSLETSGIKDITGGLPRVADLFEARRPKEPAILAEISGIISFGKETKG 1171 Query: 523 -RRI--------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS--------------- 422 RR+ + + E IP R L V G + I+ S Sbjct: 1172 KRRLVISPINGSDVYEEMIPKWRHLNVFEGERVEKGDVISDGPESPHDILRLRGVHAVTK 1231 Query: 421 -LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR 245 +VN++Q VYR QGV+I+++HIE+I+RQ+ K + +G + FL GE R A Sbjct: 1232 YIVNEVQDVYRLQGVKINDKHIEVIVRQMLKKATIL-NGSQSEFLEGEQTEFSRIRIANN 1290 Query: 244 ALDES--IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 71 S I Y LLGIT++SL T+SFIS ASFQET RVL ++A+ G+ID L+GLKENV+ Sbjct: 1291 NTKSSDKINYSRDLLGITKSSLATESFISAASFQETTRVLTESAVSGKIDELRGLKENVI 1350 Query: 70 XG 65 G Sbjct: 1351 VG 1352
>RPOC_LEGPH (Q5ZYP9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1401 Score = 110 bits (276), Expect = 3e-24 Identities = 93/250 (37%), Positives = 132/250 (52%), Gaps = 43/250 (17%) Frame = -1 Query: 685 ATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE------ 524 A VN G ++ GD + E+S++ DIT GLP+V +FEAR + E Sbjct: 1099 AIVNFEDGSLVGIGDVIARIPQERSKTRDITGGLPRVADLFEARKPKDSAVMAEVSGLVN 1158 Query: 523 --------RRI-----EDW--NERIP--RILGVPWGFLIGAELTIAQSRIS--------- 422 RR+ ED E IP R + V G + IA+ ++ Sbjct: 1159 FGKETKGKRRLIINVSEDQCHEELIPKWRHISVFEGEHVERGEIIAEGALNPHDILRLLG 1218 Query: 421 -------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI---G 272 +VN++Q VYR QGV+I+++HIE+I+RQ+ K ++ G S FL GE + Sbjct: 1219 VGALANYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKRVITFAGDSK-FLVGEQVEESA 1277 Query: 271 LLRAERAGRALDESIYYRA-ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWL 95 +L+ A + I ILLGIT+ASL T+SFIS ASFQET RVL +AA+ G++D L Sbjct: 1278 MLQENDKLLAEGKQIARGTPILLGITKASLATESFISAASFQETTRVLTEAAVSGKVDEL 1337 Query: 94 KGLKENVVXG 65 +GLKENV+ G Sbjct: 1338 RGLKENVMVG 1347
>RPOC_LEGPA (Q5X865) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1401 Score = 110 bits (276), Expect = 3e-24 Identities = 93/250 (37%), Positives = 132/250 (52%), Gaps = 43/250 (17%) Frame = -1 Query: 685 ATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE------ 524 A VN G ++ GD + E+S++ DIT GLP+V +FEAR + E Sbjct: 1099 AIVNFEDGSLVGIGDVIARIPQERSKTRDITGGLPRVADLFEARKPKDSAVMAEVSGLVN 1158 Query: 523 --------RRI-----EDW--NERIP--RILGVPWGFLIGAELTIAQSRIS--------- 422 RR+ ED E IP R + V G + IA+ ++ Sbjct: 1159 FGKETKGKRRLIINVSEDQCHEELIPKWRHISVFEGEHVERGEIIAEGALNPHDILRLLG 1218 Query: 421 -------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI---G 272 +VN++Q VYR QGV+I+++HIE+I+RQ+ K ++ G S FL GE + Sbjct: 1219 VGALANYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKRVITFAGDSK-FLVGEQVEESA 1277 Query: 271 LLRAERAGRALDESIYYRA-ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWL 95 +L+ A + I ILLGIT+ASL T+SFIS ASFQET RVL +AA+ G++D L Sbjct: 1278 MLQENDKLLAEGKQIARGTPILLGITKASLATESFISAASFQETTRVLTEAAVSGKVDEL 1337 Query: 94 KGLKENVVXG 65 +GLKENV+ G Sbjct: 1338 RGLKENVMVG 1347
>RPOC_CORJK (Q4JT33) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1323 Score = 110 bits (275), Expect(2) = 4e-24 Identities = 61/123 (49%), Positives = 84/123 (68%), Gaps = 4/123 (3%) Frame = -1 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI----GLLRAER 254 L+N++QKVYR QGV IH++HIEII+RQ+ +V V + G S FLPG L+ + ++ Sbjct: 1142 LINEVQKVYRDQGVAIHDKHIEIIVRQMLRRVTVIDSG-STEFLPGSLVDHADAVAASKE 1200 Query: 253 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 A + + RA ++GIT+ASL T+S++S ASFQET RVL AA+ R D L GLKENV Sbjct: 1201 AVKTGGRPVEVRAEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKENV 1260 Query: 73 VXG 65 + G Sbjct: 1261 IIG 1263 Score = 20.8 bits (42), Expect(2) = 4e-24 Identities = 7/19 (36%), Positives = 12/19 (63%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTG ++ Sbjct: 1257 KENVIIGKLIPAGTGISRY 1275
>RPOC_MYCTU (P0A674) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 110 bits (275), Expect(2) = 4e-24 Identities = 62/126 (49%), Positives = 83/126 (65%), Gaps = 4/126 (3%) Frame = -1 Query: 430 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 251 +I LV ++Q+VYR+QGV IH++HIE+I+RQ+ +V + + G S FLPG LI E Sbjct: 1131 QIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG-STEFLPGSLIDRAEFEAE 1189 Query: 250 GRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 83 R + E R +L+GIT+ASL T S++S ASFQET RVL AA+ R D L GLK Sbjct: 1190 NRRVVAEGGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLK 1249 Query: 82 ENVVXG 65 ENV+ G Sbjct: 1250 ENVIIG 1255 Score = 20.8 bits (42), Expect(2) = 4e-24 Identities = 7/19 (36%), Positives = 12/19 (63%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTG ++ Sbjct: 1249 KENVIIGKLIPAGTGINRY 1267
>RPOC_MYCBO (P0A675) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 110 bits (275), Expect(2) = 4e-24 Identities = 62/126 (49%), Positives = 83/126 (65%), Gaps = 4/126 (3%) Frame = -1 Query: 430 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 251 +I LV ++Q+VYR+QGV IH++HIE+I+RQ+ +V + + G S FLPG LI E Sbjct: 1131 QIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG-STEFLPGSLIDRAEFEAE 1189 Query: 250 GRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 83 R + E R +L+GIT+ASL T S++S ASFQET RVL AA+ R D L GLK Sbjct: 1190 NRRVVAEGGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLK 1249 Query: 82 ENVVXG 65 ENV+ G Sbjct: 1250 ENVIIG 1255 Score = 20.8 bits (42), Expect(2) = 4e-24 Identities = 7/19 (36%), Positives = 12/19 (63%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTG ++ Sbjct: 1249 KENVIIGKLIPAGTGINRY 1267
>RPOC_PROAC (Q6A6K7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1293 Score = 110 bits (275), Expect(2) = 4e-24 Identities = 87/232 (37%), Positives = 119/232 (51%), Gaps = 53/232 (22%) Frame = -1 Query: 601 DITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNER-----------------IPRI 485 DITQGLP+V ++FEARS SP E RI++ + R +PR Sbjct: 1006 DITQGLPRVVELFEARSPKGKSPLAEAAGVIRIDESDNRRKLVLVRDDGEDDVEYVVPRR 1065 Query: 484 LGVPWGFLIGAELTIAQS--------------------RIS--------LVNKIQKVYRS 389 + + L G I RIS LV ++QKVY + Sbjct: 1066 ARLEFD-LDGTHRVIRDGVRVAAGEQLMGGTADPQDVLRISGVRRVQEYLVKEVQKVYNT 1124 Query: 388 QGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR-ALDES---IYY 221 QG IH +HIEI+IRQ+ ++ V E G + + +PGEL+ E A R A+ E Sbjct: 1125 QGAGIHEKHIEIVIRQMLRRITVIESGDTQM-MPGELVDRGAYEAANRKAVAEGGRPAEG 1183 Query: 220 RAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 R +L+GIT+ASL T+S++S ASFQET +VL AA+ G+ D L GLKENV+ G Sbjct: 1184 RPVLMGITKASLATESWLSAASFQETTKVLTDAAINGKTDTLVGLKENVILG 1235 Score = 20.8 bits (42), Expect(2) = 4e-24 Identities = 8/19 (42%), Positives = 12/19 (63%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ LG +IP GTG + + Sbjct: 1229 KENVILGKLIPAGTGLEVY 1247
>RPOC_DEHSC (Q3ZX00) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1295 Score = 110 bits (275), Expect = 4e-24 Identities = 76/204 (37%), Positives = 120/204 (58%), Gaps = 4/204 (1%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIPRI 485 GE+ +G+ L+T Y +S + T +P QI + ++ D++ +++ D + I Sbjct: 1070 GEVTVEGN-LITIKYSESEEREYT--IPAAMQI-KVKTGDTIRAG--QQLTDGSINPQDI 1123 Query: 484 LGVPWGFLIGAELTIAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGM 305 L + +G + + LV ++QKVY SQGV I+++HIE+I RQ+ KVR+ G Sbjct: 1124 LSI-----LGRDAV----QKYLVEEVQKVYYSQGVHINDKHIEVIARQMLIKVRIDSSGD 1174 Query: 304 SNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRASLNTQSFISEASFQETAR 137 +++ +PGEL+ R E + E +L+GITRASL+T+S+++ ASFQET R Sbjct: 1175 TDL-VPGELVDKFRYEDINAKVLAEGGEPATAHTVLMGITRASLSTESWLAAASFQETTR 1233 Query: 136 VLAKAALRGRIDWLKGLKENVVXG 65 VL AA+ GR+D L GLKENV+ G Sbjct: 1234 VLTDAAIYGRVDKLSGLKENVIIG 1257 Score = 30.8 bits (68), Expect = 4.3 Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 5/44 (11%) Frame = -1 Query: 601 DITQGLPKVEQIFEAR-----SIDSLSPNLERRIEDWNERIPRI 485 DIT GLP+VE++FEAR SI S + IE+ N R RI Sbjct: 970 DITTGLPRVEELFEARPPKVQSIISEIDGVVEVIENENGRHIRI 1013
>RPOC_MANSM (Q65W40) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1420 Score = 109 bits (273), Expect(2) = 7e-24 Identities = 87/237 (36%), Positives = 125/237 (52%), Gaps = 43/237 (18%) Frame = -1 Query: 646 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------------IDSLSPNLE--RRI-- 515 G+ L E + DIT GLP+V +FEAR I S + RR+ Sbjct: 1119 GEPLARIPQESVGTKDITGGLPRVADLFEARKPKEPAILAEITGIVSFGKETKGKRRLVI 1178 Query: 514 -----EDWNERIP--RILGVPWGFLI--------GAELTIAQSRIS--------LVNKIQ 404 E + E IP R L V G ++ GAE R+ +VN++Q Sbjct: 1179 TPVEGEAYEEMIPKWRQLNVFEGEMVERGDVISDGAETPHDILRLRGVHAVTEYIVNEVQ 1238 Query: 403 KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES-- 230 +VYR QGV+I+++HIE+I+RQ+ K +++ + FL GE + + R + R + Sbjct: 1239 EVYRLQGVKINDKHIEVIVRQMLRKGIITK-AYDSEFLEGEQVEVARVKIVNRKREAEGK 1297 Query: 229 --IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 + + LLGIT+ASL T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1298 PPVEFERELLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVG 1354 Score = 20.8 bits (42), Expect(2) = 7e-24 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGF 37 K+ +G +IP GTGF Sbjct: 1348 KENVIVGRLIPAGTGF 1363
>RPOC_NITEU (Q82T76) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 109 bits (272), Expect = 1e-23 Identities = 84/251 (33%), Positives = 126/251 (50%), Gaps = 43/251 (17%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER---- 521 G+ + G+ + G+ L E S++ DIT GLP+V ++FEAR + E Sbjct: 1117 GSIITVRDGQQVNIGEVLARIPQETSKTRDITGGLPRVAELFEARVPKDVGFLAEATGTV 1176 Query: 520 ---RIEDWNER--IPRILGVPWGFLIGAELTIAQSRISLVNK------------------ 410 + +R I + GV +LI + + +VNK Sbjct: 1177 AFGKDTKGKQRLVITDLDGVAHEYLIPKDKHVTAHDGQVVNKGEVIVDGPIDPHDILRLQ 1236 Query: 409 ------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG-- 272 +Q VYR QGV+I+++HIE+I+RQ+ +V++ G S+ F+PGE + Sbjct: 1237 GVEALARYISNEVQDVYRLQGVRINDKHIEVIVRQMLRRVQIMNAGDSS-FIPGEQVERA 1295 Query: 271 --LLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW 98 L E+ Y +LLGIT+ASL+T SFIS ASFQET RVL +A++ G+ D Sbjct: 1296 EVLTENEKLIAENKMPATYEYVLLGITKASLSTDSFISAASFQETTRVLTEASIMGKKDD 1355 Query: 97 LKGLKENVVXG 65 L+GLKENV+ G Sbjct: 1356 LRGLKENVIVG 1366
>RPOC_DEHE1 (Q3Z8V3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1295 Score = 108 bits (271), Expect = 1e-23 Identities = 59/123 (47%), Positives = 84/123 (68%), Gaps = 4/123 (3%) Frame = -1 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 LV ++QKVY SQGV I+++HIE+I RQ+ KVR+ G +++ +PGEL+ R E Sbjct: 1136 LVEEVQKVYYSQGVHINDKHIEVIARQMLIKVRIDSSGDTDL-VPGELVDKFRYEDINAK 1194 Query: 241 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 + E +L+GITRASL+T+S+++ ASFQET RVL AA+ G++D L GLKENV Sbjct: 1195 VLAEGGEPATAHTVLMGITRASLSTESWLAAASFQETTRVLTDAAIYGKVDKLSGLKENV 1254 Query: 73 VXG 65 + G Sbjct: 1255 IIG 1257 Score = 30.0 bits (66), Expect = 7.4 Identities = 12/16 (75%), Positives = 15/16 (93%) Frame = -1 Query: 601 DITQGLPKVEQIFEAR 554 DIT GLP+VE++FEAR Sbjct: 970 DITTGLPRVEELFEAR 985
>RPOC_EHRRW (Q5HC04) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1411 Score = 108 bits (270), Expect(2) = 2e-23 Identities = 82/254 (32%), Positives = 128/254 (50%), Gaps = 46/254 (18%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR--SIDSLSPNLERRI 515 GA ++ G+ ++ GD + E ++ DIT GLP+V ++FEAR ++ +++ + Sbjct: 1097 GAVLSVQDGQKVHAGDVITRIPRESIKTRDITGGLPRVIELFEARRPKEHAIVSDIDGYV 1156 Query: 514 E---DWNERIPRILGVPWGFLIG-AELTIAQSRISLVNK--------------------- 410 E D+ RI P + E + + + ++VN+ Sbjct: 1157 EFGKDYYRSKRRIFIKPVDDKLSPVEYLVPKGKHTIVNEGDFVHKGDLLMDGDPDPHDIL 1216 Query: 409 ---------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 275 IQ+VYR QGV+I N+HIE+I+RQ+ KV + E G ++L GE + Sbjct: 1217 RVLGVEALANYMIAEIQQVYRLQGVRIDNKHIEVILRQMLQKVEIFEPG-DTMYLVGENV 1275 Query: 274 GLLRAERAGRALDE----SIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGR 107 + + +++ Y IL GITRASL+T SF+S ASFQET +VL +AA G+ Sbjct: 1276 DVEEVLKTNSNMEKIGKSPAKYIPILQGITRASLDTNSFVSAASFQETTKVLTEAAFSGK 1335 Query: 106 IDWLKGLKENVVXG 65 D L GLKENV+ G Sbjct: 1336 EDSLYGLKENVIVG 1349 Score = 20.8 bits (42), Expect(2) = 2e-23 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGF 37 K+ +G +IP GTGF Sbjct: 1343 KENVIVGRLIPAGTGF 1358
>RPOC_LEPIN (Q8F0S3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 108 bits (269), Expect(2) = 2e-23 Identities = 81/245 (33%), Positives = 126/245 (51%), Gaps = 45/245 (18%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER--RIEDWNERI- 494 G+IL+K + + EK+R DIT GLP+V+++FEAR + E +IE E + Sbjct: 1117 GDILFK----IPTVAEKTR--DITGGLPRVDELFEARRPKDATTLAETDGKIEISGEIVK 1170 Query: 493 -----------PRILGVPWGFLIGAELTIAQS---------------------------- 431 P + V IG ++ + Sbjct: 1171 EKRVLYIHPDNPDLEKVKVTIPIGKQIRVRNGDFVKRGDQIDDGNLDPHDILRVKGVTAL 1230 Query: 430 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 251 ++ LV ++Q+VYR QGV I+++HIE+++RQ+ KV +++ G ++ ++ L+ E Sbjct: 1231 QVYLVQEVQEVYRLQGVHINDKHIEVVVRQMLRKVLITDSGDTSFVNQQQIDRLVFNEEN 1290 Query: 250 GRALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKE 80 R + E ILLG+T+ASLNT+SF S ASFQET +VL AA++G+ D L GLKE Sbjct: 1291 KRVIAEGGSPAESVPILLGLTKASLNTESFFSAASFQETTKVLTDAAIKGKTDNLMGLKE 1350 Query: 79 NVVXG 65 NV+ G Sbjct: 1351 NVIIG 1355 Score = 21.2 bits (43), Expect(2) = 2e-23 Identities = 8/19 (42%), Positives = 13/19 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTG +K+ Sbjct: 1349 KENVIIGHMIPAGTGTKKY 1367
>RPOC_LEPIC (Q72UA7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 108 bits (269), Expect(2) = 2e-23 Identities = 81/245 (33%), Positives = 126/245 (51%), Gaps = 45/245 (18%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLER--RIEDWNERI- 494 G+IL+K + + EK+R DIT GLP+V+++FEAR + E +IE E + Sbjct: 1117 GDILFK----IPTVAEKTR--DITGGLPRVDELFEARRPKDATTLAETDGKIEISGEIVK 1170 Query: 493 -----------PRILGVPWGFLIGAELTIAQS---------------------------- 431 P + V IG ++ + Sbjct: 1171 EKRVLYIHPDNPDLEKVKVTIPIGKQIRVRNGDFVKRGDQIDDGNLDPHDILRVKGVTAL 1230 Query: 430 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 251 ++ LV ++Q+VYR QGV I+++HIE+++RQ+ KV +++ G ++ ++ L+ E Sbjct: 1231 QVYLVQEVQEVYRLQGVHINDKHIEVVVRQMLRKVLITDSGDTSFVNQQQIDRLVFNEEN 1290 Query: 250 GRALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKE 80 R + E ILLG+T+ASLNT+SF S ASFQET +VL AA++G+ D L GLKE Sbjct: 1291 KRVIAEGGSPAESVPILLGLTKASLNTESFFSAASFQETTKVLTDAAIKGKTDNLMGLKE 1350 Query: 79 NVVXG 65 NV+ G Sbjct: 1351 NVIIG 1355 Score = 21.2 bits (43), Expect(2) = 2e-23 Identities = 8/19 (42%), Positives = 13/19 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTG +K+ Sbjct: 1349 KENVIIGHMIPAGTGTKKY 1367
>RPOC_DESDG (Q30X04) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1386 Score = 103 bits (256), Expect(2) = 2e-23 Identities = 87/252 (34%), Positives = 130/252 (51%), Gaps = 44/252 (17%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------SIDSL- 539 GA + G+ + GD + E S++ DI GLP+V ++FE R ID + Sbjct: 1094 GAILMVRDGQEITAGDIIARKPRESSKTKDIVGGLPRVAELFEVRKPKDMAVVSQIDGIV 1153 Query: 538 ----SPNLERRI----EDWNER---IP--RILGVPWGFLIGAELTIAQSRISL------- 419 +R++ E +E+ +P + + V G + A + + L Sbjct: 1154 TFAGETKGKRKLVVTPETGDEKEYLVPKGKHITVTDGDFVEAGEMLTEGHPELHDILGVK 1213 Query: 418 ---------VNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI--G 272 V +IQ VYR QGV I ++HIE+I+RQ+ KV V + G ++ FL GE + Sbjct: 1214 GEKYLANYLVEEIQDVYRFQGVGIDDKHIEVIVRQMLKKVTVLDPGQTS-FLVGEQVDKA 1272 Query: 271 LLRAERAGRALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRID 101 R E +A++E ++LGIT+ASL T SFIS ASFQET +VL +A+LRG+ D Sbjct: 1273 EFRIENQ-KAIEEGRTPATAEPLVLGITQASLTTSSFISAASFQETTKVLTEASLRGKND 1331 Query: 100 WLKGLKENVVXG 65 L+GLKENV+ G Sbjct: 1332 HLRGLKENVIVG 1343 Score = 26.2 bits (56), Expect(2) = 2e-23 Identities = 9/21 (42%), Positives = 16/21 (76%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVH 22 K+ +G +IP GTG++++VH Sbjct: 1337 KENVIVGRLIPAGTGYREYVH 1357
>RPOC_FRATT (Q5NID1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1417 Score = 108 bits (270), Expect = 2e-23 Identities = 87/262 (33%), Positives = 135/262 (51%), Gaps = 45/262 (17%) Frame = -1 Query: 715 QLNLILATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDS-- 542 +L I GA +N IL GD + E S++ DIT GLP+V ++FEAR Sbjct: 1082 ELKSIPLAVGAVLNVADDSILEVGDIVAKIPLEGSKNKDITGGLPRVAELFEARRPKDAA 1141 Query: 541 -LSP------------NLERRIE--DWNERIPRILGVPWGFLI----GAELT-------- 443 LSP ++RIE D N I + +P + G +++ Sbjct: 1142 ILSPCDGMVRLGNRDTKEKQRIEIIDKNGHIVEEILLPKSRHLVVFDGEQVSRGDVLADG 1201 Query: 442 ------------IAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSN 299 + + ++ + Q VYR QGV I+++HIE I+RQ+ K + ++G S Sbjct: 1202 PTDPHDLLKYKGLEEFADYILIEAQSVYRMQGVVINDKHIETIVRQMLRKAVILDEGDSK 1261 Query: 298 VFLPGELIGLLRA----ERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVL 131 F+ E I L+R ++ + + + Y +L+GITR+SL+T+SF+S ASFQET RVL Sbjct: 1262 -FVKDESIELVRILEENDKLRKQGKKEVEYELVLMGITRSSLSTESFLSAASFQETTRVL 1320 Query: 130 AKAALRGRIDWLKGLKENVVXG 65 +A++ +ID L+GLKENV+ G Sbjct: 1321 TEASINSQIDNLRGLKENVLIG 1342
>RPOC_IDILO (Q5QWA4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1411 Score = 108 bits (270), Expect = 2e-23 Identities = 89/241 (36%), Positives = 126/241 (52%), Gaps = 47/241 (19%) Frame = -1 Query: 646 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 515 GD L E S++ DIT GLP+V +FEAR + E RR+ Sbjct: 1118 GDTLARIPQEGSKTRDITGGLPRVADLFEARKPKEPAILAEKTGTVSFGKETKGKRRLLI 1177 Query: 514 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 407 + E IP R L V G + IA + +VN++ Sbjct: 1178 TPTDGGDQHEEMIPKWRQLNVFEGEQVTKGEVIADGPEAPHDILRLRGVSAVANYIVNEV 1237 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGL-------LRAERAG 248 Q+VYR QGV+I+++HIE I+RQ+ K + G +N+ L GE++ + +AE G Sbjct: 1238 QEVYRLQGVKINDKHIETIVRQMLRKALILRAGDTNL-LEGEMVEMSEVLAANAKAEADG 1296 Query: 247 RALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVX 68 + +I+ R LLGIT+ASL+T+SFIS ASFQET RVL +AA+ G+ D L+GLKENV+ Sbjct: 1297 KK--PAIFERQ-LLGITKASLSTESFISAASFQETTRVLTEAAVGGKKDSLRGLKENVIV 1353 Query: 67 G 65 G Sbjct: 1354 G 1354
>RPOC_SYMTH (Q67JT4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1179 Score = 108 bits (270), Expect = 2e-23 Identities = 80/221 (36%), Positives = 119/221 (53%), Gaps = 42/221 (19%) Frame = -1 Query: 601 DITQGLPKVEQIFEARSI--DSLSPNLERRIEDWNERIPRIL------------GVPWGF 464 DITQGLP+VE++FEAR ++ L+ + ++ R + +P+G Sbjct: 927 DITQGLPRVEELFEARKPKGQAIIAELDGEVSITEQKGRREITITSEDGESVTYSIPYGA 986 Query: 463 LI----------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIHNRHIE 356 + G ELT + + L+ ++QKVY QGV I+++HIE Sbjct: 987 RVKVRSGQFVEAGDELTEGSVNPHDLLRVKGLRGVQRYLLREVQKVYNLQGVDINDKHIE 1046 Query: 355 IIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG-RALDES---IYYRAILLGITRAS 188 I++RQ+ KV+V + G +++ LPG + + E R + E R +LLGIT+AS Sbjct: 1047 IMVRQMLRKVKVEDPGDTDL-LPGGFVDIFDFEDENERVIMEGGVPAVARPMLLGITKAS 1105 Query: 187 LNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 L T SF+S ASFQET RVL AA++G+ D L GLKENV+ G Sbjct: 1106 LATDSFLSAASFQETTRVLTDAAIKGKRDPLLGLKENVIIG 1146
>RPOC_EHRRG (Q5FFD8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1411 Score = 108 bits (269), Expect(2) = 2e-23 Identities = 82/254 (32%), Positives = 128/254 (50%), Gaps = 46/254 (18%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR--SIDSLSPNLERRI 515 GA ++ G+ ++ GD + E ++ DIT GLP+V ++FEAR ++ +++ + Sbjct: 1097 GAVLSVQDGQKVHAGDVITRIPRESIKTRDITGGLPRVIELFEARRPKEHAIVSDIDGYV 1156 Query: 514 E---DWNERIPRILGVPWGFLIG-AELTIAQSRISLVNK--------------------- 410 E D+ RI P + E + + + ++VN+ Sbjct: 1157 EFGKDYYRSKRRIFIKPVDDKLSPVEYLVPKGKHTIVNEGDFVHKGDLLMDGDPDPHDIL 1216 Query: 409 ---------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 275 IQ+VYR QGV+I N+HIE+I+RQ+ KV + E G ++L GE + Sbjct: 1217 RVLGVEALANYMIAEIQQVYRLQGVRIDNKHIEVILRQMLQKVEIFEPG-DTMYLIGENV 1275 Query: 274 GLLRAERAGRALDE----SIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGR 107 + + +++ Y IL GITRASL+T SF+S ASFQET +VL +AA G+ Sbjct: 1276 DVEEVLKTNSNMEKIGKSPAKYIPILQGITRASLDTNSFVSAASFQETTKVLTEAAFSGK 1335 Query: 106 IDWLKGLKENVVXG 65 D L GLKENV+ G Sbjct: 1336 EDSLYGLKENVIVG 1349 Score = 20.8 bits (42), Expect(2) = 2e-23 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGF 37 K+ +G +IP GTGF Sbjct: 1343 KENVIVGRLIPAGTGF 1358
>RPOC_PSYAR (Q4FQH4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 108 bits (269), Expect = 2e-23 Identities = 60/123 (48%), Positives = 84/123 (68%), Gaps = 4/123 (3%) Frame = -1 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 +VN++Q VYR QGV+I+++HIE+IIRQ+ KV +++ G SN F G+ + + Sbjct: 1226 IVNEVQDVYRLQGVKINDKHIEVIIRQMLRKVEITDGGDSNHF-KGDQVEYADIKALNAK 1284 Query: 241 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 L+ + + LLGIT+ASL T+SFIS ASFQET RVL AA+ G++D L+GLKENV Sbjct: 1285 LEAEDKFPVQFERQLLGITKASLATESFISAASFQETTRVLTAAAVTGKVDELRGLKENV 1344 Query: 73 VXG 65 V G Sbjct: 1345 VVG 1347
>RPOC_CHRVO (Q7NQE7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 108 bits (269), Expect = 2e-23 Identities = 81/251 (32%), Positives = 127/251 (50%), Gaps = 43/251 (17%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIF------------------ 563 GA + G+ + KG+ L E S++ DIT GLP+V ++F Sbjct: 1106 GAIITVRDGQDVGKGEVLARIPQESSKTRDITGGLPRVAELFEARSPKDAGMLAEVTGTV 1165 Query: 562 -----------------EARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQ 434 E ++L P + + + + R + G + ++ Q Sbjct: 1166 SFGKDTKGKQRLIITDLEGNGYENLIPKDKHVLVHDGQVVNRGESIVDGPVDPHDILRLQ 1225 Query: 433 SRISL----VNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG-- 272 +L V ++Q+VYR QGV+I+++HIE+IIRQ+ +V +++ G + F+ GE + Sbjct: 1226 GIEALARYIVQEVQEVYRLQGVKINDKHIEVIIRQMLRRVIITDSGDTE-FIQGEQVERA 1284 Query: 271 --LLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW 98 L ++ E Y +LLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D Sbjct: 1285 DVLEMNDKMMAENKEPAQYENVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDD 1344 Query: 97 LKGLKENVVXG 65 L+GLKENV+ G Sbjct: 1345 LRGLKENVIVG 1355
>RPOC_BUCBP (Q89B21) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 108 bits (269), Expect = 2e-23 Identities = 87/238 (36%), Positives = 121/238 (50%), Gaps = 44/238 (18%) Frame = -1 Query: 646 GDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE--------------RRI-- 515 GD L E + DIT GLP+V +FEAR L+ E RR+ Sbjct: 1118 GDTLARIPQESGGTKDITGGLPRVADLFEARRPKELAILAEISGFISFGKDTKGKRRLII 1177 Query: 514 ------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS----------------LVNKI 407 + E IP R L V G + I+ S ++N++ Sbjct: 1178 TPYNNNTPYEEMIPKWRQLNVFEGERVEKGDVISDGPESPHDILRLRGVQAVTKYIINEV 1237 Query: 406 QKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESI 227 Q+VYR QGV+I+++HIE+IIRQ+ K + + S FL GE + R + + R L + Sbjct: 1238 QEVYRLQGVKINDKHIEVIIRQMLRKATIIKSEHSE-FLDGEQVEYSRIKVSNRNLSKIG 1296 Query: 226 YYRAI----LLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 AI LLGIT+ASL T+SFIS ASFQET RVL ++++ G+ D L+GLKENV+ G Sbjct: 1297 KKTAIFSRDLLGITKASLATESFISAASFQETTRVLTESSVAGKKDELRGLKENVIVG 1354
>RPOC_RICCN (Q9RH40) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1372 Score = 108 bits (269), Expect = 2e-23 Identities = 86/252 (34%), Positives = 130/252 (51%), Gaps = 44/252 (17%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR--SIDSLSPNLERRI 515 GA ++ G + GD + E + + DIT GLP+V ++ EAR ++ ++ R+ Sbjct: 1096 GAVLSVEDGVQISVGDIIARIPKESTTTKDITGGLPRVAELVEARRPKDHAVIAEIDGRV 1155 Query: 514 E---DWNERIPRILG-----------VPWG---------FLIGAELTIAQSRIS------ 422 E D+ + I+ VP G F+ +L I + + Sbjct: 1156 EFGKDYKSKRRIIIHPIDETMSIEYMVPKGKHVVVNEGDFVKKGDLLIDGNPVLQDILKV 1215 Query: 421 ---------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGL 269 +VN++Q VYR QGV+I ++HIE+IIRQ+ KV V++ G L GE I Sbjct: 1216 MGVEVLANYIVNEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEVTDSG-GTTLLVGEKIDR 1274 Query: 268 LRAERAG-RALDESIY---YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRID 101 + +A+ + + IL GIT+ASL T+SFIS ASFQET RVL +AA+ G++D Sbjct: 1275 HEFDEINEKAMKNGLKPAEAQLILQGITKASLQTRSFISAASFQETTRVLTEAAIAGKVD 1334 Query: 100 WLKGLKENVVXG 65 L+GLKENV+ G Sbjct: 1335 KLRGLKENVIVG 1346
>RPOC_RICFE (Q4UKD5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1372 Score = 107 bits (268), Expect = 3e-23 Identities = 84/253 (33%), Positives = 127/253 (50%), Gaps = 45/253 (17%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR--SIDSLSPNLERRI 515 GA ++ G + GD + E + + DIT GLP+V ++ EAR ++ ++ R+ Sbjct: 1096 GAVLSVEDGVQISVGDIIARIPKESTTTKDITGGLPRVAELVEARRPKDHAVIAEIDGRV 1155 Query: 514 E---DWNERIPRILGVPWGFLIGAELTIAQSRISLVNK---------------------- 410 E D+ + RI+ P + E + + + +VN+ Sbjct: 1156 EFGKDYKSK-RRIIIHPIDETMSIEYMVPKGKHVVVNEGDFVKKGDLLIDGNPVLQDILK 1214 Query: 409 --------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG 272 +Q VYR QGV+I ++HIE+IIRQ+ KV +++ G L GE I Sbjct: 1215 VMGVEVLANYIVKEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEITDSG-GTTLLAGEKID 1273 Query: 271 LLRAERAG-RALDESIY---YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRI 104 E +A+ + + IL GIT+ASL T+SFIS ASFQET RVL +AA+ G+I Sbjct: 1274 RHEFEEINEKAIKNGLKPAEAQLILQGITKASLQTRSFISAASFQETTRVLTEAAIAGKI 1333 Query: 103 DWLKGLKENVVXG 65 D L+GLKENV+ G Sbjct: 1334 DKLRGLKENVIVG 1346
>RPOC_LEGPL (Q5WZL8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1401 Score = 107 bits (268), Expect = 3e-23 Identities = 92/250 (36%), Positives = 131/250 (52%), Gaps = 43/250 (17%) Frame = -1 Query: 685 ATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE------ 524 A VN ++ GD + E+S++ DIT GLP+V +FEAR + E Sbjct: 1099 AIVNFEDRSLVGIGDVIARIPQERSKTRDITGGLPRVADLFEARKPKDSAVMAEVSGLVN 1158 Query: 523 --------RRI-----EDW--NERIP--RILGVPWGFLIGAELTIAQSRIS--------- 422 RR+ ED E IP R + V G + IA+ ++ Sbjct: 1159 FGKETKGKRRLIINVSEDQCHEELIPKWRHISVFEGEHVERGEIIAEGALNPHDILRLLG 1218 Query: 421 -------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI---G 272 +VN++Q VYR QGV+I+++HIE+I+RQ+ K ++ G S FL GE + Sbjct: 1219 VGALANYIVNEVQDVYRLQGVKINDKHIEVIVRQMLRKRVITFAGDSK-FLVGEQVEESA 1277 Query: 271 LLRAERAGRALDESIYYRA-ILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWL 95 +L+ A + I ILLGIT+ASL T+SFIS ASFQET RVL +AA+ G++D L Sbjct: 1278 MLQENDKLLAEGKQIARGTPILLGITKASLATESFISAASFQETTRVLTEAAVSGKVDEL 1337 Query: 94 KGLKENVVXG 65 +GLKENV+ G Sbjct: 1338 RGLKENVMVG 1347
>RPOC_LACAC (Q5FM96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1217 Score = 107 bits (267), Expect(2) = 3e-23 Identities = 81/225 (36%), Positives = 118/225 (52%), Gaps = 44/225 (19%) Frame = -1 Query: 607 SSDITQGLPKVEQIFEARS-------------IDSLSPNLE---RRIEDWNERIPRILGV 476 + DITQGLP+V+++FEAR+ IDS+ N R I + R V Sbjct: 950 AEDITQGLPRVQELFEARNPKGRATISEVDGVIDSIQENPAEHTREITVKGKIDTRSYSV 1009 Query: 475 PWGFLI----------GAELTIAQ--------------SRISLVNKIQKVYRSQGVQIHN 368 P+ + G +LT+ + ++ ++QK YR QGV I + Sbjct: 1010 PYTASVAVSEGDYVHRGDKLTLGSVDPKELIQVTDTLTTEKYILAEVQKAYRMQGVDIAD 1069 Query: 367 RHIEIIIRQVTSKVRVSEDGMSNVFLPGEL--IGLLRAERAGRALDESIYYRA--ILLGI 200 +H+E++ RQ+ KVRV + G +++ LPGE+ IG R + I A I+L I Sbjct: 1070 KHVEVLTRQMLQKVRVLDPGETDI-LPGEVMDIGQFRDRNKEVIISGGIPATAQSIILSI 1128 Query: 199 TRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 T+A+L T SF+S ASFQET RVL A++RG+ D L GLKENV+ G Sbjct: 1129 TKAALETNSFLSAASFQETTRVLTDASIRGKNDPLLGLKENVIIG 1173 Score = 20.8 bits (42), Expect(2) = 3e-23 Identities = 9/25 (36%), Positives = 13/25 (52%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKFVHRSPQ 10 K+ +G IIP GTG + P+ Sbjct: 1167 KENVIIGKIIPAGTGMPIYRSMEPE 1191
>RPOC_BLOFL (Q7VRP8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1420 Score = 107 bits (266), Expect = 5e-23 Identities = 87/247 (35%), Positives = 126/247 (51%), Gaps = 47/247 (19%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFE------ARSIDSLSPNL-------- 527 G + GD L +E S + DIT GLP+V +FE A + +S + Sbjct: 1120 GSRIISGDVLARLPHETSGTKDITGGLPRVADLFEARRPKEAAILAEISGVISFGKETKG 1179 Query: 526 ERRI-----------EDWNERIP--RILGVPWGFLIGAELTIAQSRIS------------ 422 +RR+ + E IP R L V G + I+ S Sbjct: 1180 KRRLMICSTDENGGENIYEEMIPKWRHLNVFEGEYVERGDVISDGPESPHDILRLRGVHA 1239 Query: 421 ----LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAER 254 +VN++Q+VYR QGV+I+++HIE+IIRQ+ K V G S+ FL GE + R + Sbjct: 1240 VTNYIVNEVQEVYRLQGVKINDKHIEVIIRQMLRKAIVIRSGDSD-FLAGEQVEYARIKI 1298 Query: 253 AGRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGL 86 + L+ + + LLGIT+ASL T+SFIS ASFQET RVL ++++ G+ D L+GL Sbjct: 1299 VNQTLEREGKVKVSFVRNLLGITKASLATESFISAASFQETTRVLTESSVAGKKDDLRGL 1358 Query: 85 KENVVXG 65 KENV+ G Sbjct: 1359 KENVIVG 1365
>RPOC_CORGL (Q8NT25) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1333 Score = 106 bits (264), Expect(2) = 8e-23 Identities = 62/123 (50%), Positives = 83/123 (67%), Gaps = 4/123 (3%) Frame = -1 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR- 245 L++++Q VYR+QGV IH++HIEIIIRQ+ + V E G S FLPG L+ L A+ A Sbjct: 1155 LIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIESG-STEFLPGSLVDLSEAKLANSE 1213 Query: 244 ---ALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 A + R+ ++GIT+ASL T+S++S ASFQET RVL AA+ R D L GLKENV Sbjct: 1214 AIGAGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKENV 1273 Query: 73 VXG 65 + G Sbjct: 1274 IIG 1276 Score = 20.8 bits (42), Expect(2) = 8e-23 Identities = 7/19 (36%), Positives = 12/19 (63%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTG ++ Sbjct: 1270 KENVIIGKLIPAGTGISRY 1288
>RPOC_SILPO (Q5LMQ6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1413 Score = 106 bits (264), Expect = 8e-23 Identities = 82/246 (33%), Positives = 123/246 (50%), Gaps = 46/246 (18%) Frame = -1 Query: 664 GEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR---------SID----------- 545 G+++ GD + E +++ DIT GLP+V ++FEAR ID Sbjct: 1106 GQVIEAGDVIARIPREGAKTKDITGGLPRVAELFEARRPKDHAIIAEIDGYVRFGRDYKN 1165 Query: 544 ----SLSPNLERRIEDWNERIPR------------------ILGVPWGFLIGAELTIAQS 431 S+ P+ E +E +P+ + G P I + L + Sbjct: 1166 KRRISIEPSNEA-MEPVEYMVPKGKHIPVQEGDFVQKGDYIMDGNPAPHDILSILGVEAL 1224 Query: 430 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 251 +V ++Q+VYR QGV+I+++HIE+I+RQ+ K +S+ G L GE + + A Sbjct: 1225 ANYMVKEVQEVYRLQGVKINDKHIEVIVRQMLQKWEISDSG-DTTLLKGEHVDKQEFDAA 1283 Query: 250 GRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLK 83 ILLGIT+ASL T+SFIS ASFQET RVL +A+++G+ D L GLK Sbjct: 1284 NEKTIARGGRPASGEPILLGITKASLQTRSFISAASFQETTRVLTEASVQGKKDKLVGLK 1343 Query: 82 ENVVXG 65 ENV+ G Sbjct: 1344 ENVIVG 1349
>RPOC_CORDI (Q6NJF6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1336 Score = 105 bits (263), Expect(2) = 1e-22 Identities = 62/123 (50%), Positives = 82/123 (66%), Gaps = 4/123 (3%) Frame = -1 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 LV+++Q VYR+QGV IH++HIEIIIRQ+ + V E G S FLPG L+ L A+ A Sbjct: 1156 LVDEVQDVYRAQGVAIHDKHIEIIIRQMLRRGTVIESG-STEFLPGTLVDLSEAKAANAE 1214 Query: 241 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 + R+ ++GIT+ASL T+S++S ASFQET RVL AA+ R D L GLKENV Sbjct: 1215 ALANGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKENV 1274 Query: 73 VXG 65 + G Sbjct: 1275 IIG 1277 Score = 20.8 bits (42), Expect(2) = 1e-22 Identities = 7/19 (36%), Positives = 12/19 (63%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTG ++ Sbjct: 1271 KENVIIGKLIPAGTGISRY 1289
>RPOC_RICTY (Q68XM7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1372 Score = 105 bits (263), Expect = 1e-22 Identities = 83/253 (32%), Positives = 127/253 (50%), Gaps = 45/253 (17%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR--SIDSLSPNLERRI 515 GA ++ G + GD + E + + DIT GLP+V ++ EAR ++ ++ R+ Sbjct: 1096 GAVLSVEDGIQISVGDIIARIPKESTTTKDITGGLPRVAELVEARRPKDHAVIAEVDGRV 1155 Query: 514 E---DWNERIPRILGVPWGFLIGAELTIAQSRISLVNK---------------------- 410 E D+ + RI+ P + E + + + +VN+ Sbjct: 1156 EFGKDYKSK-RRIIIHPIDGTLSIEYMVPKGKHVVVNEGDFVKKGDLLIDGNPVLQDILK 1214 Query: 409 --------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG 272 +Q VYR QGV+I ++HIE+IIRQ+ KV V++ G L GE I Sbjct: 1215 VMGVEVLANYIVKEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEVTDSG-GTTLLVGEKID 1273 Query: 271 LLRAERAG-RALDESIY---YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRI 104 + +A+ + + IL GIT+ASL T+SFIS ASFQET RVL +AA+ G++ Sbjct: 1274 RHEFDEINEKAMKNGLKPAEAQLILQGITKASLQTRSFISAASFQETTRVLTEAAIAGKV 1333 Query: 103 DWLKGLKENVVXG 65 D L+GLKENV+ G Sbjct: 1334 DKLRGLKENVIVG 1346
>RPOC_COREF (Q8FS96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1333 Score = 105 bits (262), Expect(2) = 1e-22 Identities = 61/123 (49%), Positives = 82/123 (66%), Gaps = 4/123 (3%) Frame = -1 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 L++++Q VYR+QGV IH++HIEIIIRQ+ + V E G S FLPG L+ L A+ A Sbjct: 1155 LIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIESG-STEFLPGSLVDLSEAKLANSE 1213 Query: 241 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 + R+ ++GIT+ASL T+S++S ASFQET RVL AA+ R D L GLKENV Sbjct: 1214 AIANGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKENV 1273 Query: 73 VXG 65 + G Sbjct: 1274 IIG 1276 Score = 31.2 bits (69), Expect = 3.3 Identities = 13/23 (56%), Positives = 19/23 (82%) Frame = -1 Query: 601 DITQGLPKVEQIFEARSIDSLSP 533 DIT GLP+V+++FEAR +L+P Sbjct: 1038 DITGGLPRVQELFEARVPKNLAP 1060 Score = 20.8 bits (42), Expect(2) = 1e-22 Identities = 7/19 (36%), Positives = 12/19 (63%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQKF 28 K+ +G +IP GTG ++ Sbjct: 1270 KENVIIGKLIPAGTGISRY 1288
>RPOC_RICPR (Q9ZE20) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1372 Score = 105 bits (262), Expect = 1e-22 Identities = 83/253 (32%), Positives = 127/253 (50%), Gaps = 45/253 (17%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR--SIDSLSPNLERRI 515 GA ++ G + GD + E + + DIT GLP+V ++ EAR ++ ++ R+ Sbjct: 1096 GAVLSVEDGIQISVGDIIARIPKESTTTKDITGGLPRVAELVEARRPKDHAVIAEVDGRV 1155 Query: 514 E---DWNERIPRILGVPWGFLIGAELTIAQSRISLVNK---------------------- 410 E D+ + RI+ P + E + + + +VN+ Sbjct: 1156 EFGKDYKSK-RRIIIHPIDGTMSIEYMVPKGKHVVVNEGDFVKKGDLLIDGNPVLQDILK 1214 Query: 409 --------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG 272 +Q VYR QGV+I ++HIE+IIRQ+ KV V++ G L GE I Sbjct: 1215 VMGVEVLANYIVKEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEVTDSG-GTTLLVGEKID 1273 Query: 271 LLRAERAG-RALDESIY---YRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRI 104 + +A+ + + IL GIT+ASL T+SFIS ASFQET RVL +AA+ G++ Sbjct: 1274 RHEFDEINAKAMKNGLKPAEAQLILQGITKASLQTRSFISAASFQETTRVLTEAAIAGKV 1333 Query: 103 DWLKGLKENVVXG 65 D L+GLKENV+ G Sbjct: 1334 DKLRGLKENVIVG 1346
>RPOC_CHLTR (O84316) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 105 bits (261), Expect = 2e-22 Identities = 84/253 (33%), Positives = 125/253 (49%), Gaps = 44/253 (17%) Frame = -1 Query: 691 TGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPN 530 +GA ++ G+ + G L ++ DIT GLP+V ++ EAR I + Sbjct: 1106 SGAIISVEEGQRIAPGMLLARLPRGAIKTKDITGGLPRVAELVEARKPEDAADIAKIDGV 1165 Query: 529 LERRIEDWNERI----PRILGVPWGFLI----------------GAELT----------- 443 ++ + N+RI I G+ LI G +LT Sbjct: 1166 VDFKGIQKNKRILVVRDEITGMEEEHLISLTKHLIVQRGDSVIKGQQLTDGLVVPHEILE 1225 Query: 442 ---IAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG 272 + + + LVN++Q+VYR QGV I+++H+EII+RQ+ KVR+++ G L GE + Sbjct: 1226 ICGVRELQKYLVNEVQEVYRLQGVDINDKHVEIIVRQMLQKVRITDPG-DTTLLFGEDVD 1284 Query: 271 LLRAERAGRALDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAALRGRI 104 R +E A +LLGIT+ASL T+SFIS ASFQ+T RVL AA + Sbjct: 1285 KKEFYEENRRTEEDGGKPAQAVPVLLGITKASLGTESFISAASFQDTTRVLTDAACSSKT 1344 Query: 103 DWLKGLKENVVXG 65 D+L G KENV+ G Sbjct: 1345 DYLLGFKENVIMG 1357
>RPOC_CHLTA (Q3KM48) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 105 bits (261), Expect = 2e-22 Identities = 84/253 (33%), Positives = 125/253 (49%), Gaps = 44/253 (17%) Frame = -1 Query: 691 TGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPN 530 +GA ++ G+ + G L ++ DIT GLP+V ++ EAR I + Sbjct: 1106 SGAIISVEEGQRIAPGMLLARLPRGAIKTKDITGGLPRVAELVEARKPEDAADIAKIDGV 1165 Query: 529 LERRIEDWNERI----PRILGVPWGFLI----------------GAELT----------- 443 ++ + N+RI I G+ LI G +LT Sbjct: 1166 VDFKGIQKNKRILVVRDEITGMEEEHLISLTKHLIVQRGDSVIKGQQLTDGLVVPHEILE 1225 Query: 442 ---IAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG 272 + + + LVN++Q+VYR QGV I+++H+EII+RQ+ KVR+++ G L GE + Sbjct: 1226 ICGVRELQKYLVNEVQEVYRLQGVDINDKHVEIIVRQMLQKVRITDPG-DTTLLFGEDVD 1284 Query: 271 LLRAERAGRALDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAALRGRI 104 R +E A +LLGIT+ASL T+SFIS ASFQ+T RVL AA + Sbjct: 1285 KKEFYEENRRTEEDGGKPAQAVPVLLGITKASLGTESFISAASFQDTTRVLTDAACSSKT 1344 Query: 103 DWLKGLKENVVXG 65 D+L G KENV+ G Sbjct: 1345 DYLLGFKENVIMG 1357
>RPOC_CHLMU (Q9PK79) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 105 bits (261), Expect = 2e-22 Identities = 84/253 (33%), Positives = 125/253 (49%), Gaps = 44/253 (17%) Frame = -1 Query: 691 TGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPN 530 +GA ++ G+ + G L ++ DIT GLP+V ++ EAR I + Sbjct: 1106 SGAIISVEEGQRIAPGMLLARLPRGAIKTKDITGGLPRVAELVEARKPEDAADIAKIDGV 1165 Query: 529 LERRIEDWNERI----PRILGVPWGFLI----------------GAELT----------- 443 ++ + N+RI + G+ LI G +LT Sbjct: 1166 VDFKGIQKNKRILVVRDEVTGMEEEHLISLTKHLIVQRGDSVIKGQQLTDGLVVPHEILE 1225 Query: 442 ---IAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG 272 + + + LVN++Q+VYR QGV I+++HIEII+RQ+ KVR+++ G L GE + Sbjct: 1226 ICGVRELQKYLVNEVQEVYRLQGVDINDKHIEIIVRQMLQKVRITDPG-DTTLLFGEDVD 1284 Query: 271 LLRAERAGRALDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAALRGRI 104 R +E A +LLGIT+ASL T+SFIS ASFQ+T RVL AA + Sbjct: 1285 KKEFYEENRRTEEDGGKPAQAVPVLLGITKASLGTESFISAASFQDTTRVLTDAACSSKT 1344 Query: 103 DWLKGLKENVVXG 65 D+L G KENV+ G Sbjct: 1345 DYLLGFKENVIMG 1357
>RPOC_AZOSE (Q5P338) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1409 Score = 105 bits (261), Expect = 2e-22 Identities = 85/265 (32%), Positives = 126/265 (47%), Gaps = 57/265 (21%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEAR--------------- 554 G+ + G+ + GD L E +++ DIT GLP+V ++FEAR Sbjct: 1109 GSLITVKDGQEVSVGDILARIPQESAKTRDITGGLPRVAELFEARPPKDAGVLAEYTGTV 1168 Query: 553 SIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQSRISLVNK------------ 410 S + +R + I G FLI + + +VNK Sbjct: 1169 SFGKDTKGKQRLV------ITEADGTAHEFLIPKDKHVMVHDGQVVNKGELIVDGPADPH 1222 Query: 409 ------------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPG 284 +Q VYR QGV+I+++HIE+I+RQ+ +V +++ G S Sbjct: 1223 DILRLQGIEALARYIIDEVQDVYRLQGVKINDKHIEVIVRQMLRRVVINDAGNSR----- 1277 Query: 283 ELIGLLRAERAGRA--LDES----------IYYRAILLGITRASLNTQSFISEASFQETA 140 +R E+ R+ LDE+ Y+ +LLGIT+ASL+T SFIS ASFQET Sbjct: 1278 ----FIREEQVERSEVLDENDRIEAEGKLPAQYQNVLLGITKASLSTDSFISAASFQETT 1333 Query: 139 RVLAKAALRGRIDWLKGLKENVVXG 65 RVL +AA+ G+ D L+GLKENV+ G Sbjct: 1334 RVLTEAAIMGKRDDLRGLKENVIVG 1358
>RPOC_DECAR (Q47JA9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1403 Score = 104 bits (260), Expect = 2e-22 Identities = 84/251 (33%), Positives = 124/251 (49%), Gaps = 43/251 (17%) Frame = -1 Query: 688 GATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARSIDSLSPNLE----- 524 G+ ++ G+ + GD L E +++ DIT GLP+V ++FEAR+ S E Sbjct: 1108 GSIISVVDGQQVGVGDVLARMPQESAKTRDITGGLPRVAELFEARTPKDASVLAEVTGTI 1167 Query: 523 --RRIEDWNER--IPRILGVPWGFLIGAELTIAQSRISLVNK------------------ 410 + +R I + G FLI + + +VNK Sbjct: 1168 SFGKDTKGKQRLVITDLEGNVHEFLISKDKHVLVHDGQVVNKGEKIVEGEPDPHDILRLQ 1227 Query: 409 ------------IQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG-- 272 +Q VYR QGV+I+++HIE+I+RQ+ +V + E G + F+ E + Sbjct: 1228 GIEALARYITDEVQDVYRLQGVKINDKHIEVIVRQMLRRVTIVEPGDTK-FIKSEQVERA 1286 Query: 271 --LLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDW 98 L +RA +LLGIT+ASL+T SFIS ASFQET RVL +AA+ G+ D Sbjct: 1287 ELLAENDRANAEGKIPATIEHMLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDE 1346 Query: 97 LKGLKENVVXG 65 L+GLKENV+ G Sbjct: 1347 LRGLKENVIVG 1357
>RPOC_DESPS (Q6AP77) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1349 Score = 103 bits (258), Expect = 4e-22 Identities = 87/228 (38%), Positives = 124/228 (54%), Gaps = 43/228 (18%) Frame = -1 Query: 619 EKSRSSDITQGLPKVEQIFEARS---------ID---SLSPNLE--RRI-------EDWN 503 E S++ DIT GLP+V ++FE R ID S L+ RR+ E Sbjct: 1110 ETSKTKDITGGLPRVAELFEVRKPKDPAIIARIDGKVSFGKELKGKRRVVVTPEYGEQQE 1169 Query: 502 ERIPRI--LGVPWGFLIGA-----ELTIAQSRIS-----------LVNKIQKVYRSQGVQ 377 +P+ + V G + A E TI + I LV++IQ+VYR QGV+ Sbjct: 1170 YLVPKAKHIIVHEGDYVQAGEPLMEGTIVPNDILSVLGVKALAKFLVDEIQEVYRLQGVK 1229 Query: 376 IHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLR-AERAGRALDESIYYRA---IL 209 I+++HIE+I+RQ+ +V ++ S F+ GE + + E R L E A +L Sbjct: 1230 INDKHIEVIVRQMLKRVHITRANDSK-FMIGENVEWWKFEEERDRLLAEGKKPGAAEPLL 1288 Query: 208 LGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 LG+T+ASL+T+SFIS ASFQET +VL AA+ GR+D L GLKENV+ G Sbjct: 1289 LGVTKASLSTESFISAASFQETTKVLTNAAMSGRVDELLGLKENVIMG 1336
>RPOC_THET8 (Q8RQE8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1524 Score = 103 bits (257), Expect = 5e-22 Identities = 75/223 (33%), Positives = 121/223 (54%), Gaps = 42/223 (18%) Frame = -1 Query: 607 SSDITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNERIP----------------- 491 ++DITQGLP+V ++FEAR + + E RIE+ E++ Sbjct: 1249 AADITQGLPRVIELFEARRPKAKAVISEIDGVVRIEETEEKLSVFVESEGFSKEYKLPKE 1308 Query: 490 -RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHNRH 362 R+L V G + A + + I LV +IQKVYR+QGV++H++H Sbjct: 1309 ARLL-VKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKH 1367 Query: 361 IEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITR 194 IEI++RQ+ V V++ G S + L G+++ E L + ++ +L+G+T+ Sbjct: 1368 IEIVVRQMMKYVEVTDPGDSRL-LEGQVLEKWDVEALNERLIAEGKTPVAWKPLLMGVTK 1426 Query: 193 ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 ++L+T+S++S ASFQ T VL +AA+ G+ D L GLKENV+ G Sbjct: 1427 SALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILG 1469
>RPOC_CHLCV (Q822J2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1393 Score = 103 bits (257), Expect = 5e-22 Identities = 80/226 (35%), Positives = 115/226 (50%), Gaps = 44/226 (19%) Frame = -1 Query: 610 RSSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERI----PRILGVPWGFL 461 ++ DIT GLP+V ++ EAR I + ++ + N+RI I G+ L Sbjct: 1131 KTKDITGGLPRVAELVEARKPEDAADIAKIDGVVDFKGIQKNKRILVVRDEITGMEEEHL 1190 Query: 460 I----------------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIH 371 I G +LT + + + LVN++Q+VYR QGV I+ Sbjct: 1191 IPLTKHLIVQRGDNVMKGQQLTDGLVVPHEILEICGVRELQKYLVNEVQEVYRLQGVDIN 1250 Query: 370 NRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRA----ILLG 203 ++HIEII+RQ+ KVR+++ G L GE + R +E A +LLG Sbjct: 1251 DKHIEIIVRQMLQKVRITDPG-DTTLLFGEEVNKKEFYEENRRTEEDGGKPAQAVPVLLG 1309 Query: 202 ITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 IT+ASL T+SFIS ASFQ+T RVL AA + D+L G KENV+ G Sbjct: 1310 ITKASLGTESFISAASFQDTTRVLTDAACSSKTDYLLGFKENVIMG 1355
>RPOC_CAUCR (Q9AAU1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 103 bits (256), Expect = 7e-22 Identities = 87/261 (33%), Positives = 132/261 (50%), Gaps = 49/261 (18%) Frame = -1 Query: 700 LATTGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSL 539 L + GA ++ G+ + G+ + E +++ DIT GLP+V ++FEAR I + Sbjct: 1091 LLSAGAILSVADGDEVKPGEVIARIPTEGAKTRDITGGLPRVAELFEARRPKDCAVIAEM 1150 Query: 538 SPNLE--------RRIE-------DWNERIPRILGVPWGFLI----GAELTIAQSRIS-- 422 +E RRI+ D N+ +P G I G +T + I Sbjct: 1151 DGRVEFGKDYKNKRRIKITPDVDADGNQPEAVEFLIPKGKHIAVHDGDYITKGEYIIDGN 1210 Query: 421 ------------------LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNV 296 LV++IQ+VYR QGV I+++HIE I+RQ+ KV + E G + + Sbjct: 1211 PDPHDILRILGVEALANFLVDEIQEVYRLQGVPINDKHIETIVRQMLQKVEILEPGDTGL 1270 Query: 295 FLPGELIGL----LRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLA 128 + G+ + E+A + +LLGIT+ASL T+SFIS ASFQET RVL Sbjct: 1271 -IKGDHLDKPEFDKEQEKAIARGGRPAVTQPVLLGITKASLQTKSFISAASFQETTRVLT 1329 Query: 127 KAALRGRIDWLKGLKENVVXG 65 +A++ G+ D L+GLKENV+ G Sbjct: 1330 EASVHGKTDTLEGLKENVIVG 1350
>RPOC_THEAQ (Q9KWU6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1524 Score = 103 bits (256), Expect = 7e-22 Identities = 75/222 (33%), Positives = 121/222 (54%), Gaps = 42/222 (18%) Frame = -1 Query: 604 SDITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNERIP------------------ 491 +DITQGLP+V ++FEAR + + E RIE+ +R+ Sbjct: 1250 TDITQGLPRVIELFEARRPKAKAVISEIDGVVRIEEGEDRLSVFVESEGFSKEYKLPKDA 1309 Query: 490 RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHNRHI 359 R+L V G + A + + I LV++IQKVYR+QGV++H++HI Sbjct: 1310 RLL-VKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVDEIQKVYRAQGVKLHDKHI 1368 Query: 358 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGITRA 191 EI++RQ+ V V++ G S + L G+++ E L + ++ +L+G+T++ Sbjct: 1369 EIVVRQMLKYVEVTDPGDSRL-LEGQVLEKWDVEALNERLIAEGKVPVAWKPLLMGVTKS 1427 Query: 190 SLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 +L+T+S++S ASFQ T VL +AA+ G+ D L GLKENV+ G Sbjct: 1428 ALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILG 1469
>RPOC_CHLPN (Q9Z999) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1393 Score = 103 bits (256), Expect = 7e-22 Identities = 84/253 (33%), Positives = 125/253 (49%), Gaps = 44/253 (17%) Frame = -1 Query: 691 TGATVNGHYGEILYKGDRLVTFIYEKSRSSDITQGLPKVEQIFEARS------IDSLSPN 530 +GA ++ G+ + G L ++ DIT GLP+V ++ EAR I + Sbjct: 1104 SGAIISVEEGQRVDPGMLLARLPRGAIKTKDITGGLPRVAELVEARKPEDAADIAKIDGV 1163 Query: 529 LERRIEDWNERI----PRILGVPWGFLI----------------GAELT----------- 443 ++ + N+RI + G+ LI G +LT Sbjct: 1164 VDFKGIQKNKRILVVCDEMTGMEEEHLIPLTKHLIVQRGDSVIKGQQLTDGLVVPHEILE 1223 Query: 442 ---IAQSRISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG 272 + + + LVN++Q+VYR QGV I+++HIEII+RQ+ KVR+++ G L GE + Sbjct: 1224 ICGVRELQKYLVNEVQEVYRLQGVDINDKHIEIIVRQMLQKVRITDPG-DTTLLFGEDVN 1282 Query: 271 LLRAERAGRALDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAALRGRI 104 R +E A +LLGIT+ASL T+SFIS ASFQ+T RVL AA + Sbjct: 1283 KKEFYEENRRTEEDGGKPAQAVPVLLGITKASLGTESFISAASFQDTTRVLTDAACCSKT 1342 Query: 103 DWLKGLKENVVXG 65 D+L G KENV+ G Sbjct: 1343 DYLLGFKENVIMG 1355
>RPOC_THET2 (Q72HM6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1513 Score = 102 bits (255), Expect = 9e-22 Identities = 74/223 (33%), Positives = 120/223 (53%), Gaps = 42/223 (18%) Frame = -1 Query: 607 SSDITQGLPKVEQIFEARSIDSLSPNLER----RIEDWNERIP----------------- 491 ++DITQGLP+V ++FEAR + + E RIE+ E++ Sbjct: 1238 AADITQGLPRVIELFEARRPKAKAVISEIDGVVRIEETEEKLSVFVESEGFSKEYKLPKE 1297 Query: 490 -RILGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQIHNRH 362 R+L G + A + + I LV +IQKVYR+QGV++H++H Sbjct: 1298 ARLLAKD-GDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKH 1356 Query: 361 IEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITR 194 IEI++RQ+ V V++ G S + L G+++ E L + ++ +L+G+T+ Sbjct: 1357 IEIVVRQMMKYVEVTDPGDSRL-LEGQVLEKWDVEALNERLIAEGKTPVAWKPLLMGVTK 1415 Query: 193 ASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 ++L+T+S++S ASFQ T VL +AA+ G+ D L GLKENV+ G Sbjct: 1416 SALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILG 1458
>RPOBC_WOLSU (Q7MA56) Bifunctional DNA-directed RNA polymerase, beta and beta'| chain (EC 2.7.7.6) [Includes: DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit); DNA-directed RNA polymerase beta' chain (Transcri Length = 2883 Score = 100 bits (249), Expect(2) = 1e-21 Identities = 77/227 (33%), Positives = 117/227 (51%), Gaps = 44/227 (19%) Frame = -1 Query: 613 SRSSDITQGLPKVEQIFEARS---------IDS---------------LSPNLERRIEDW 506 ++S DIT GLP+V ++FEAR ID ++ + R E Sbjct: 2635 AKSKDITGGLPRVSELFEARKPKDPAVLAEIDGVVSFGKPIRGKERIIITADDGRTTEYA 2694 Query: 505 NERIPRILGVPWGFLIGAELTIAQSRIS----------------LVNKIQKVYRSQGVQI 374 ++ IL V G + A +I +S +V+++Q+VYR QGV I Sbjct: 2695 VDKSKHIL-VHHGEFVHAGESITDGIVSSHDILRISGEKELHKYIVSEVQQVYRRQGVNI 2753 Query: 373 HNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA----ERAGRALDESIYYRAILL 206 ++HIEII+ Q+ +VR+ + G + F+ G+L+ ER R E +LL Sbjct: 2754 ADKHIEIIVSQMLRQVRIVDSGNTK-FIEGDLVSKRHFKEENERTIRLGGEPAIAEPVLL 2812 Query: 205 GITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 GITRA++ + S IS ASFQET +VL +A++ +ID+L+ LKENVV G Sbjct: 2813 GITRAAIGSDSIISAASFQETTKVLTEASIAAKIDFLEDLKENVVLG 2859 Score = 22.3 bits (46), Expect(2) = 1e-21 Identities = 10/18 (55%), Positives = 12/18 (66%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGFQK 31 K+ LG +IPVGTG K Sbjct: 2853 KENVVLGRMIPVGTGIYK 2870
>RPOC_COXBU (Q83ET0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1414 Score = 102 bits (253), Expect(2) = 1e-21 Identities = 56/123 (45%), Positives = 84/123 (68%), Gaps = 4/123 (3%) Frame = -1 Query: 421 LVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 242 +VN++Q+VYR QGV+I+++HIE+I+RQ+ KV++++ G +++ L E + R Sbjct: 1232 IVNEVQEVYRLQGVKINDKHIEVIVRQMLRKVKITQPGDTDL-LQNEQVERTRVREENEK 1290 Query: 241 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENV 74 + + ILLGIT+ASL T+SFIS ASFQET RVL A++ G+ D L+GLKENV Sbjct: 1291 IIKKDGTVAKVEPILLGITKASLATESFISAASFQETTRVLTAASVAGKRDDLRGLKENV 1350 Query: 73 VXG 65 + G Sbjct: 1351 IVG 1353 Score = 20.8 bits (42), Expect(2) = 1e-21 Identities = 8/16 (50%), Positives = 11/16 (68%) Frame = -2 Query: 84 KKT*XLGGIIPVGTGF 37 K+ +G +IP GTGF Sbjct: 1347 KENVIVGRLIPAGTGF 1362
>RPOC_CHLAB (Q5L5I4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1393 Score = 102 bits (253), Expect = 2e-21 Identities = 78/226 (34%), Positives = 115/226 (50%), Gaps = 44/226 (19%) Frame = -1 Query: 610 RSSDITQGLPKVEQIFEARS------IDSLSPNLERRIEDWNERI----PRILGVPWGFL 461 ++ DIT GLP+V ++ EAR I + ++ + N+RI I G+ L Sbjct: 1131 KTKDITGGLPRVAELVEARKPEDAADIAKIDGVVDFKGIQKNKRILVVRDEITGMEEEHL 1190 Query: 460 I----------------GAELT--------------IAQSRISLVNKIQKVYRSQGVQIH 371 I G +LT + + + LVN++Q+VYR QGV I+ Sbjct: 1191 IPLTKHLIVQRGDHVMKGQQLTDGLVVPHEILEICGVRELQKYLVNEVQEVYRLQGVDIN 1250 Query: 370 NRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRA----ILLG 203 ++H+EII+RQ+ KVR+++ G L GE + + +E A +LLG Sbjct: 1251 DKHVEIIVRQMLQKVRITDPG-DTTLLFGEEVNKKEFYEENKRTEEEGGKPAQAVPVLLG 1309 Query: 202 ITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVXG 65 IT+ASL T+SFIS ASFQ+T RVL AA + D+L G KENV+ G Sbjct: 1310 ITKASLGTESFISAASFQDTTRVLTDAACSSKTDYLLGFKENVIMG 1355 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 105,438,365 Number of Sequences: 219361 Number of extensions: 2168267 Number of successful extensions: 6693 Number of sequences better than 10.0: 332 Number of HSP's better than 10.0 without gapping: 5834 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6428 length of database: 80,573,946 effective HSP length: 109 effective length of database: 56,663,597 effective search space used: 7309604013 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
