>YS19_CAEEL (Q09651) Hypothetical protein ZK1307.9|
          Length = 369

 Score = 35.4 bits (80), Expect = 0.17
 Identities = 37/141 (26%), Positives = 61/141 (43%), Gaps = 16/141 (11%)
 Frame = -3

Query: 577 RHSDDYSLNRTLRDRLRSQKKRV----AEEKKSARKMGLG-VRLLPPSAED---ASAAAR 422
           R  DD++ N  LR + R++KK +    A +     K+ +G  +LLP + ED   AS   R
Sbjct: 175 RMRDDFTANSFLRAQFRNEKKSLNETRARDANLRDKLSIGTTQLLPETEEDRRIASMMTR 234

Query: 421 VRFASNFEKSRKDKRAAIKASSIF--------PEPSGSASKGKIDLALKRRNIKXXXXXA 266
            R     +   +  R  I++  IF        P  S  +S G +  A +R          
Sbjct: 235 YRDTKTHDDHLESSRDRIESRRIFRRPEETDTPSTSSGSSGGAVPSASER------LKAT 288

Query: 265 LMAGRAKPSSWSRQSSGSENA 203
           + A R K  + S  ++G+ +A
Sbjct: 289 MKAERDKRINASFSTAGTSSA 309

>H1_PARAN (P02256) Histone H1, gonadal|
          Length = 248

 Score = 33.5 bits (75), Expect = 0.63
 Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
 Frame = -3

Query: 520 KKRVAEEKKSARKMGLGVRLLPPSAEDASAAARVRFASNFEKSRKDKR-AAIKASSIFPE 344
           KK  A   K ARK     +     A+  +AAA+ + A+  +K++K K+ AA KA     +
Sbjct: 132 KKAKAAAAKKARKAKAAAKRKAALAKKKAAAAKRKAAAKAKKAKKPKKKAAKKAKKPAKK 191

Query: 343 PSGSASKGKIDLALKRRNIKXXXXXALMAGRAKPSSWSRQSSGSENARTAVPILARR 173
               A K       K++  +        AG+ KP++   + S  +  +   P  AR+
Sbjct: 192 SPKKAKKPAKKSPKKKKAKRSPKKAKKAAGKRKPAAKKARRSPRKAGKRRSPKKARK 248

>SWC5_USTMA (Q4P6D5) SWR1-complex protein 5|
          Length = 376

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 35/142 (24%), Positives = 56/142 (39%)
 Frame = -3

Query: 595 QRLSDSRHSDDYSLNRTLRDRLRSQKKRVAEEKKSARKMGLGVRLLPPSAEDASAAARVR 416
           ++++ S  + DY+   TL    R +   +    K A ++   +RLLP S  DA      +
Sbjct: 188 EQVTQSTATGDYASATTLASTARQEMVSIPTTYKFAGELHTSMRLLPRSHPDALKYLSSQ 247

Query: 415 FASNFEKSRKDKRAAIKASSIFPEPSGSASKGKIDLALKRRNIKXXXXXALMAGRAKPSS 236
            AS    S      A  AS+  P P+  AS        + +  +          R KPSS
Sbjct: 248 IAS--PTSTTSSAPAPSASASAPLPTSPASTSTSSSPSRPQPARPT------PRRKKPSS 299

Query: 235 WSRQSSGSENARTAVPILARRK 170
            S  S+ +    T +  L + K
Sbjct: 300 LSALSAAATTKPTKLNTLEKSK 321

>AIRE_MOUSE (Q9Z0E3) Autoimmune regulator (Autoimmune polyendocrinopathy|
           candidiasis ectodermal dystrophy protein homolog)
           (APECED protein homolog)
          Length = 552

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -2

Query: 437 VRSSPCEVRLKFREEQK-GQESGDQGLLHLPRAIRLSLKRQDRPRAEEAEYKS*CSVCAD 261
           VR+   +V +  R+EQK GQ+ G   L  LP   +++ K +D            C+VC D
Sbjct: 258 VRAKGAQVTIPGRDEQKVGQQCGVPPLPSLPSEPQVNQKNEDE-----------CAVCHD 306

Query: 260 GGQ 252
           GG+
Sbjct: 307 GGE 309

>MSBB_ECOLI (P24205) Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA|
           acyltransferase (EC 2.3.1.-)
          Length = 323

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = -3

Query: 472 GVRLLPPSAEDASAAARVRFASNFEKSRKDKRAAIKASSIFPEPSGSASKGKID 311
           G+ L PP   D   A   RFA    KS + +RA I  S  FPE S +  +  +D
Sbjct: 35  GIALTPPKFRDPILARLGRFAGRLGKSSR-RRALINLSLCFPERSEAEREAIVD 87

>MSBB1_SHIFL (P59198) Lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA|
           acyltransferase 1 (EC 2.3.1.-)
          Length = 323

 Score = 32.3 bits (72), Expect = 1.4
 Identities = 20/54 (37%), Positives = 26/54 (48%)
 Frame = -3

Query: 472 GVRLLPPSAEDASAAARVRFASNFEKSRKDKRAAIKASSIFPEPSGSASKGKID 311
           G+ L PP   D   A   RFA    KS + +RA I  S  FPE S +  +  +D
Sbjct: 35  GIALTPPKFRDPILARLGRFAGRLGKSSR-RRALINLSLCFPERSEAEREAIVD 87

>RS12_STAS1 (Q49V55) 30S ribosomal protein S12|
          Length = 137

 Score = 30.8 bits (68), Expect = 4.1
 Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 4/74 (5%)
 Frame = -3

Query: 607 LVRLQRLSDSRHSDDYSLNRTLRDRLRSQKKRVAEEKKSARKMGLGVRLLPPSAEDASAA 428
           LVR  R S S+ SD  +LNR       + KK+   +  S +K G+  R+   + +  ++A
Sbjct: 7   LVRKPRQSKSKKSDSPALNRNF-----NSKKKKFTDLNSPQKRGVCTRVGTMTPKKPNSA 61

Query: 427 ----ARVRFASNFE 398
               ARVR ++N E
Sbjct: 62  LRKYARVRLSNNIE 75

>ARHGG_HUMAN (Q5VV41) Rho guanine nucleotide exchange factor 16|
          Length = 709

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 26/93 (27%), Positives = 41/93 (44%), Gaps = 3/93 (3%)
 Frame = -3

Query: 511 VAEEKKSARKMGLGVRLLPPSAEDASAAARVRFASNFEKSRKDKRAAIKASSIFPEPSGS 332
           ++ E  +A K+G   +L+P S   AS A       +F  +   + AA +   + P PS S
Sbjct: 73  LSTESPAALKLGTQ-QLIPKSLAVASKAKTPARHQSFGAAVLSREAARRDPKLLPAPSFS 131

Query: 331 ASKGKIDL---ALKRRNIKXXXXXALMAGRAKP 242
                +D     + RRN++     A M G  KP
Sbjct: 132 LDDMDVDKDPGGMLRRNLRNQSYRAAMKGLGKP 164

>KPCD1_MOUSE (Q62101) Serine/threonine-protein kinase D1 (EC 2.7.11.13)|
           (nPKC-D1) (Protein kinase D) (Protein kinase C mu type)
           (nPKC-mu)
          Length = 918

 Score = 30.4 bits (67), Expect = 5.3
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = -2

Query: 383 QESGDQGLLHLPRAIRLSLKRQDRPRAEEAEYKS 282
           Q +G+QGL +    I LS    D P AEE E K+
Sbjct: 877 QYAGEQGLQYPAHLISLSASHSDSPEAEEREMKA 910

>HEX3_YEAST (P32828) Hexose metabolism-related protein HEX3|
          Length = 619

 Score = 30.0 bits (66), Expect = 7.0
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = -3

Query: 505 EEKKSARKMGLGVRLLPPSAEDASAAARVRFASNFEKSRKDKRAAIKASSIFPE 344
           EE  S R+  L VRL P         A  RF  +  +SR  +R  I ASS  P+
Sbjct: 32  EEDASIREANLPVRLYPDRRVGRRRDALNRFVRSDSRSRNSQRTHITASSERPD 85

>XBP1_RAT (Q9R1S4) X box-binding protein 1 (Hepatocarcinogenesis-related|
           transcription factor) (HTF)
          Length = 267

 Score = 29.6 bits (65), Expect = 9.1
 Identities = 22/46 (47%), Positives = 25/46 (54%)
 Frame = -3

Query: 553 NRTLRDRLRSQKKRVAEEKKSARKMGLGVRLLPPSAEDASAAARVR 416
           N+ LR RL      V EE   A   G GVRL+  SAE  SAA R+R
Sbjct: 123 NQELRTRL-GMNALVTEEVSEAESKGNGVRLVAGSAE--SAALRLR 165


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,831,051
Number of Sequences: 219361
Number of extensions: 1401846
Number of successful extensions: 4538
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4302
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4484
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6882837918
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)