ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27k18 |
|---|---|
| Clone Library Name | barley_pub |
>ETFB_RAT (Q68FU3) Electron transfer flavoprotein beta-subunit (Beta-ETF)| Length = 254 Score = 97.1 bits (240), Expect = 1e-20 Identities = 51/79 (64%), Positives = 60/79 (75%) Frame = -2 Query: 239 VAKILRALALQESPGLLILGKQAIDDDCSQTGRMLAALLNWPQGTFASKVIIXKDKQKAT 60 VA++L LA +E LL LGKQAIDDDC+QTG+M A LL+WPQGTFAS+V + DK K Sbjct: 103 VARVLAKLAEKEKVDLLFLGKQAIDDDCNQTGQMTAGLLDWPQGTFASQVTLEGDKVK-- 160 Query: 59 VEREVDGGTEXICLDLPAV 3 VERE+DGG E I L LPAV Sbjct: 161 VEREIDGGLETIRLKLPAV 179
>ETFB_MOUSE (Q9DCW4) Electron transfer flavoprotein beta-subunit (Beta-ETF)| Length = 254 Score = 96.3 bits (238), Expect = 2e-20 Identities = 50/79 (63%), Positives = 60/79 (75%) Frame = -2 Query: 239 VAKILRALALQESPGLLILGKQAIDDDCSQTGRMLAALLNWPQGTFASKVIIXKDKQKAT 60 VA++L LA +E LL LGKQAIDDDC+QTG+M A LL+WPQGTFAS+V + DK K Sbjct: 103 VARVLAKLAEKEKVDLLFLGKQAIDDDCNQTGQMTAGLLDWPQGTFASQVTLEGDKVK-- 160 Query: 59 VEREVDGGTEXICLDLPAV 3 VERE+DGG E + L LPAV Sbjct: 161 VEREIDGGLETLRLKLPAV 179
>ETFB_PIG (Q6UAQ8) Electron transfer flavoprotein beta subunit| Length = 254 Score = 94.7 bits (234), Expect = 6e-20 Identities = 48/79 (60%), Positives = 60/79 (75%) Frame = -2 Query: 239 VAKILRALALQESPGLLILGKQAIDDDCSQTGRMLAALLNWPQGTFASKVIIXKDKQKAT 60 VA++L LA +E L++LGKQAIDDDC+QTG+M A L+WPQGTFAS+V + DK K Sbjct: 103 VARVLAKLAQKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDKVK-- 160 Query: 59 VEREVDGGTEXICLDLPAV 3 VERE+DGG E + L LPAV Sbjct: 161 VEREIDGGLETLRLKLPAV 179
>ETFB_PONPY (Q5RFK0) Electron transfer flavoprotein beta-subunit (Beta-ETF)| Length = 254 Score = 94.4 bits (233), Expect = 7e-20 Identities = 48/79 (60%), Positives = 60/79 (75%) Frame = -2 Query: 239 VAKILRALALQESPGLLILGKQAIDDDCSQTGRMLAALLNWPQGTFASKVIIXKDKQKAT 60 VA++L LA +E L++LGKQAIDDDC+QTG+M A L+WPQGTFAS+V + DK K Sbjct: 103 VARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDKLK-- 160 Query: 59 VEREVDGGTEXICLDLPAV 3 VERE+DGG E + L LPAV Sbjct: 161 VEREIDGGLETLRLKLPAV 179
>ETFB_HUMAN (P38117) Electron transfer flavoprotein beta-subunit (Beta-ETF)| Length = 254 Score = 94.4 bits (233), Expect = 7e-20 Identities = 48/79 (60%), Positives = 60/79 (75%) Frame = -2 Query: 239 VAKILRALALQESPGLLILGKQAIDDDCSQTGRMLAALLNWPQGTFASKVIIXKDKQKAT 60 VA++L LA +E L++LGKQAIDDDC+QTG+M A L+WPQGTFAS+V + DK K Sbjct: 103 VARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDKLK-- 160 Query: 59 VEREVDGGTEXICLDLPAV 3 VERE+DGG E + L LPAV Sbjct: 161 VEREIDGGLETLRLKLPAV 179
>ETFB_BOVIN (Q2TBV3) Electron transfer flavoprotein beta-subunit (Beta-ETF)| Length = 254 Score = 94.0 bits (232), Expect = 9e-20 Identities = 48/79 (60%), Positives = 60/79 (75%) Frame = -2 Query: 239 VAKILRALALQESPGLLILGKQAIDDDCSQTGRMLAALLNWPQGTFASKVIIXKDKQKAT 60 VA++L LA +E L++LGKQAIDDDC+QTG+M A L+WPQGTFAS+V + DK K Sbjct: 103 VARVLAKLAEKEKVDLVLLGKQAIDDDCNQTGQMTAGFLDWPQGTFASQVTLEGDKIK-- 160 Query: 59 VEREVDGGTEXICLDLPAV 3 VERE+DGG E + L LPAV Sbjct: 161 VEREIDGGLETLRLKLPAV 179
>ETFB_BRAJA (P53575) Electron transfer flavoprotein beta-subunit (Beta-ETF)| (Electron transfer flavoprotein small subunit) (ETFSS) Length = 249 Score = 88.6 bits (218), Expect = 4e-18 Identities = 47/79 (59%), Positives = 58/79 (73%) Frame = -2 Query: 239 VAKILRALALQESPGLLILGKQAIDDDCSQTGRMLAALLNWPQGTFASKVIIXKDKQKAT 60 VAKIL+ +A +E PGL+ILGKQAIDDD +QTG+MLAALL W Q TFASK+ + K T Sbjct: 97 VAKILKKVAEEEQPGLIILGKQAIDDDSNQTGQMLAALLGWSQATFASKLEVEGSDFKVT 156 Query: 59 VEREVDGGTEXICLDLPAV 3 REVDGG + + L PA+ Sbjct: 157 --REVDGGLQTVKLKGPAI 173
>ETFB_PARDE (P38975) Electron transfer flavoprotein beta-subunit (Beta-ETF)| (Electron transfer flavoprotein small subunit) (ETFSS) Length = 252 Score = 84.0 bits (206), Expect = 1e-16 Identities = 47/79 (59%), Positives = 56/79 (70%) Frame = -2 Query: 239 VAKILRALALQESPGLLILGKQAIDDDCSQTGRMLAALLNWPQGTFASKVIIXKDKQKAT 60 VAKIL A+A E L+I GKQAID+D + TG+MLAA+L W Q TFASKV I + KA Sbjct: 101 VAKILAAVARAEGTELIIAGKQAIDNDMNATGQMLAAILGWAQATFASKVEI--EGAKAK 158 Query: 59 VEREVDGGTEXICLDLPAV 3 V REVDGG + I + LPAV Sbjct: 159 VTREVDGGLQTIAVSLPAV 177
>ETFB_SCHPO (Q9UTH2) Probable electron transfer flavoprotein beta-subunit| (Beta-ETF) Length = 254 Score = 83.2 bits (204), Expect = 2e-16 Identities = 45/79 (56%), Positives = 54/79 (68%) Frame = -2 Query: 239 VAKILRALALQESPGLLILGKQAIDDDCSQTGRMLAALLNWPQGTFASKVIIXKDKQKAT 60 VAK+L+A +E L++LGKQAIDDD QTG MLAA+L WPQ T ASKV I D K Sbjct: 103 VAKLLKATVEKEKSNLVLLGKQAIDDDAHQTGGMLAAMLGWPQFTSASKVRIEGD--KVI 160 Query: 59 VEREVDGGTEXICLDLPAV 3 V RE+DGG E + LPA+ Sbjct: 161 VTREIDGGEETLSSTLPAI 179
>ETFB_YEAST (P42940) Probable electron transfer flavoprotein beta-subunit| (Beta-ETF) Length = 261 Score = 80.1 bits (196), Expect = 1e-15 Identities = 41/79 (51%), Positives = 54/79 (68%) Frame = -2 Query: 239 VAKILRALALQESPGLLILGKQAIDDDCSQTGRMLAALLNWPQGTFASKVIIXKDKQKAT 60 +AKIL+A+ ++ L+++GKQAIDDDC+ TG+MLA LLNWPQ T A+KV D + Sbjct: 107 IAKILKAVVEKKGSNLVLMGKQAIDDDCNNTGQMLAGLLNWPQATNAAKVEFL-DNGRVQ 165 Query: 59 VEREVDGGTEXICLDLPAV 3 V RE+D G E I LP V Sbjct: 166 VTREIDDGEEVIEASLPMV 184
>ETFB_METME (P53570) Electron transfer flavoprotein beta-subunit (Beta-ETF)| (Electron transfer flavoprotein small subunit) (ETFSS) Length = 264 Score = 46.6 bits (109), Expect = 2e-05 Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Frame = -2 Query: 239 VAKILRALALQESPGLLILGKQAIDDDCSQTGRMLAALLNWPQGTFASKVIIXKDKQKAT 60 V +IL + +E+P ++ G Q+ D + TG +A+ LNWP + + KA Sbjct: 100 VGRILTEVIKKEAPDMVFAGVQSSDQAYASTGISVASYLNWPHAAVVADLQYKPGDNKAV 159 Query: 59 VEREVDGG-TEXICLDLPAV 3 + RE++GG + + ++ PAV Sbjct: 160 IRRELEGGMLQEVEINCPAV 179
>FIXA_RHISN (Q53210) Protein fixA| Length = 285 Score = 45.4 bits (106), Expect = 4e-05 Identities = 26/68 (38%), Positives = 39/68 (57%), Gaps = 1/68 (1%) Frame = -2 Query: 203 SPGLLILGKQAIDDDCSQTGRMLAALLNWPQGTFASKVIIXKDKQKA-TVEREVDGGTEX 27 SP ++ GKQ ID D +Q G +A L+ Q T+ +KV + +A TVER +GGT Sbjct: 114 SPDIVFTGKQTIDGDTAQVGPGIAKRLDLVQLTYVAKVTSIDLRTRAITVERRAEGGTHV 173 Query: 26 ICLDLPAV 3 + +LP + Sbjct: 174 LKSELPCL 181
>FIXA_RHIME (P09818) Protein fixA| Length = 292 Score = 44.3 bits (103), Expect = 9e-05 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 1/68 (1%) Frame = -2 Query: 203 SPGLLILGKQAIDDDCSQTGRMLAALLNWPQGTFASKVI-IXKDKQKATVEREVDGGTEX 27 +P ++ GKQ ID D +Q G +A L+ Q T+ +K++ I ++ TVER +GG++ Sbjct: 114 TPDVVFTGKQTIDGDTAQVGPGIAKRLDLQQLTYVAKILSIDAASREITVERRAEGGSQI 173 Query: 26 ICLDLPAV 3 + LP + Sbjct: 174 LRTGLPCL 181
>FIXA_RHILP (Q05559) Protein fixA| Length = 279 Score = 43.5 bits (101), Expect = 1e-04 Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Frame = -2 Query: 239 VAKILRALALQESPGLLILGKQAIDDDCSQTGRMLAALLNWPQGTFASKVI-IXKDKQKA 63 +AKI A +P ++ KQ ID D +Q G +A L+ Q T+ +K++ + + ++ Sbjct: 103 IAKIGEAFG---TPDIVFTAKQTIDGDTAQVGPGIAKRLDLLQLTYVAKIVSVDINGREI 159 Query: 62 TVEREVDGGTEXICLDLPAV 3 TVER +GGT+ + LP + Sbjct: 160 TVERRSEGGTQTLMSKLPCL 179
>FIXA_AZOVI (P53576) Protein fixA| Length = 281 Score = 42.0 bits (97), Expect = 4e-04 Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%) Frame = -2 Query: 239 VAKILRALALQESPGLLILGKQAIDDDCSQTGRMLAALLNWPQGTFASKVI-IXKDKQKA 63 ++ ++R + L+ GKQ ID D +Q G +A L++ T+ S+++ + K++ Sbjct: 101 LSAVIRKIMEDMPVDLIFTGKQTIDGDTAQVGPGIAKRLDYQLLTYVSRIVDVDTAKKEI 160 Query: 62 TVEREVDGGTEXICLDLPAV 3 VER +GG + + LP + Sbjct: 161 QVERRAEGGVQLLETSLPCL 180
>ETFB_CLOTS (P97089) Electron transfer flavoprotein beta-subunit (Beta-ETF)| (Electron transfer flavoprotein small subunit) (ETFSS) Length = 260 Score = 42.0 bits (97), Expect = 4e-04 Identities = 25/64 (39%), Positives = 36/64 (56%) Frame = -2 Query: 194 LLILGKQAIDDDCSQTGRMLAALLNWPQGTFASKVIIXKDKQKATVEREVDGGTEXICLD 15 ++ G+QAID D +Q G +A L+ PQ T+ KV I D K VER ++ G E I + Sbjct: 112 IVFCGRQAIDGDTAQVGPQIAEQLDIPQVTYVRKVEIEGD--KLIVERALEDGYEIIEVK 169 Query: 14 LPAV 3 P + Sbjct: 170 TPVL 173
>FIXA_ECOL6 (Q8FLA3) Protein fixA| Length = 256 Score = 40.0 bits (92), Expect = 0.002 Identities = 27/78 (34%), Positives = 39/78 (50%) Frame = -2 Query: 236 AKILRALALQESPGLLILGKQAIDDDCSQTGRMLAALLNWPQGTFASKVIIXKDKQKATV 57 A +L A A + L++ G + D Q G ++ +LN P SK II TV Sbjct: 101 ASVLAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSK-IISLTADTLTV 159 Query: 56 EREVDGGTEXICLDLPAV 3 ERE++ TE + + LPAV Sbjct: 160 ERELEDETETLSIPLPAV 177
>ETFB_MEGEL (O85691) Electron transfer flavoprotein beta-subunit (Beta-ETF)| (Electron transfer flavoprotein small subunit) (ETFSS) Length = 270 Score = 39.3 bits (90), Expect = 0.003 Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 3/71 (4%) Frame = -2 Query: 239 VAKILRALALQ---ESPGLLILGKQAIDDDCSQTGRMLAALLNWPQGTFASKVIIXKDKQ 69 +A+ ++ LA E +++ GKQAID D +Q G +A L PQ T+A + + D Sbjct: 102 LAQAIKKLAADKGIEQFDIILCGKQAIDGDTAQVGPQIACELGIPQITYARDIKVEGD-- 159 Query: 68 KATVEREVDGG 36 K TV++E + G Sbjct: 160 KVTVQQENEEG 170
>FIXA_SHIFL (P59673) Protein fixA| Length = 256 Score = 38.5 bits (88), Expect = 0.005 Identities = 27/78 (34%), Positives = 38/78 (48%) Frame = -2 Query: 236 AKILRALALQESPGLLILGKQAIDDDCSQTGRMLAALLNWPQGTFASKVIIXKDKQKATV 57 A L A A + L++ G + D Q G ++ +LN P SK II TV Sbjct: 101 ASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSK-IISLTADTLTV 159 Query: 56 EREVDGGTEXICLDLPAV 3 ERE++ TE + + LPAV Sbjct: 160 ERELEDETETLSIPLPAV 177
>FIXA_ECOLI (P60566) Protein fixA| Length = 256 Score = 38.5 bits (88), Expect = 0.005 Identities = 27/78 (34%), Positives = 38/78 (48%) Frame = -2 Query: 236 AKILRALALQESPGLLILGKQAIDDDCSQTGRMLAALLNWPQGTFASKVIIXKDKQKATV 57 A L A A + L++ G + D Q G ++ +LN P SK II TV Sbjct: 101 ASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSK-IISLTADTLTV 159 Query: 56 EREVDGGTEXICLDLPAV 3 ERE++ TE + + LPAV Sbjct: 160 ERELEDETETLSIPLPAV 177
>FIXA_ECO57 (P60567) Protein fixA| Length = 256 Score = 38.5 bits (88), Expect = 0.005 Identities = 27/78 (34%), Positives = 38/78 (48%) Frame = -2 Query: 236 AKILRALALQESPGLLILGKQAIDDDCSQTGRMLAALLNWPQGTFASKVIIXKDKQKATV 57 A L A A + L++ G + D Q G ++ +LN P SK II TV Sbjct: 101 ASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSK-IISLTADTLTV 159 Query: 56 EREVDGGTEXICLDLPAV 3 ERE++ TE + + LPAV Sbjct: 160 ERELEDETETLSIPLPAV 177
>FIXA_SALTY (Q8ZRX0) Protein fixA| Length = 256 Score = 37.7 bits (86), Expect = 0.008 Identities = 27/78 (34%), Positives = 37/78 (47%) Frame = -2 Query: 236 AKILRALALQESPGLLILGKQAIDDDCSQTGRMLAALLNWPQGTFASKVIIXKDKQKATV 57 A L A A + LLI G + D Q G ++ LN P SK++ D TV Sbjct: 101 ATALAAAAQKSGFDLLICGDGSSDLYAQQVGLLVGEALNIPAINGVSKILSLTDST-LTV 159 Query: 56 EREVDGGTEXICLDLPAV 3 ERE++ E + + LPAV Sbjct: 160 ERELEDEVETLSIPLPAV 177
>FIXA_SALTI (Q8Z9L0) Protein fixA| Length = 256 Score = 37.7 bits (86), Expect = 0.008 Identities = 27/78 (34%), Positives = 37/78 (47%) Frame = -2 Query: 236 AKILRALALQESPGLLILGKQAIDDDCSQTGRMLAALLNWPQGTFASKVIIXKDKQKATV 57 A L A A + LLI G + D Q G ++ LN P SK++ D TV Sbjct: 101 ATALAAAAQKSGFDLLICGDGSSDLYAQQVGLLVGEALNIPAINGVSKILSLTDST-LTV 159 Query: 56 EREVDGGTEXICLDLPAV 3 ERE++ E + + LPAV Sbjct: 160 ERELEDEVETLSIPLPAV 177
>FIXA_SALPA (Q5PIN4) Protein fixA| Length = 256 Score = 37.7 bits (86), Expect = 0.008 Identities = 27/78 (34%), Positives = 37/78 (47%) Frame = -2 Query: 236 AKILRALALQESPGLLILGKQAIDDDCSQTGRMLAALLNWPQGTFASKVIIXKDKQKATV 57 A L A A + LLI G + D Q G ++ LN P SK++ D TV Sbjct: 101 ATALAAAAQKSGFDLLICGDGSSDLYAQQVGLLVGEALNIPAINGVSKILSLTDST-LTV 159 Query: 56 EREVDGGTEXICLDLPAV 3 ERE++ E + + LPAV Sbjct: 160 ERELEDEVETLSIPLPAV 177
>ETFB_MYCTU (P64097) Electron transfer flavoprotein beta-subunit (Beta-ETF)| (Electron transfer flavoprotein small subunit) (ETFSS) Length = 266 Score = 35.0 bits (79), Expect = 0.052 Identities = 27/76 (35%), Positives = 35/76 (46%) Frame = -2 Query: 230 ILRALALQESPGLLILGKQAIDDDCSQTGRMLAALLNWPQGTFASKVIIXKDKQKATVER 51 + RAL E L+I G ++ D ++A L PQ T KV I + K T ER Sbjct: 108 LARALGTIEGTELVIAGNESTDGVGGAVPAIIAEYLGLPQLTHLRKVSI--EGGKITGER 165 Query: 50 EVDGGTEXICLDLPAV 3 E D G + LPAV Sbjct: 166 ETDEGVFTLEATLPAV 181
>ETFB_MYCBO (P64098) Electron transfer flavoprotein beta-subunit (Beta-ETF)| (Electron transfer flavoprotein small subunit) (ETFSS) Length = 266 Score = 35.0 bits (79), Expect = 0.052 Identities = 27/76 (35%), Positives = 35/76 (46%) Frame = -2 Query: 230 ILRALALQESPGLLILGKQAIDDDCSQTGRMLAALLNWPQGTFASKVIIXKDKQKATVER 51 + RAL E L+I G ++ D ++A L PQ T KV I + K T ER Sbjct: 108 LARALGTIEGTELVIAGNESTDGVGGAVPAIIAEYLGLPQLTHLRKVSI--EGGKITGER 165 Query: 50 EVDGGTEXICLDLPAV 3 E D G + LPAV Sbjct: 166 ETDEGVFTLEATLPAV 181
>ETFB_CLOAB (P52040) Electron transfer flavoprotein beta-subunit (Beta-ETF)| (Electron transfer flavoprotein small subunit) (ETFSS) Length = 259 Score = 34.7 bits (78), Expect = 0.068 Identities = 20/64 (31%), Positives = 33/64 (51%) Frame = -2 Query: 194 LLILGKQAIDDDCSQTGRMLAALLNWPQGTFASKVIIXKDKQKATVEREVDGGTEXICLD 15 ++ G+QAID D +Q G +A L PQ T+ KV + D K + + + G E + + Sbjct: 112 IVFAGRQAIDGDTAQVGPEIAEHLGIPQVTYVEKVEVDGDTLK--IRKAWEDGYEVVEVK 169 Query: 14 LPAV 3 P + Sbjct: 170 TPVL 173
>ETFB_MYCLE (O33095) Electron transfer flavoprotein beta-subunit (Beta-ETF)| (Electron transfer flavoprotein small subunit) (ETFSS) Length = 266 Score = 30.8 bits (68), Expect = 0.98 Identities = 24/76 (31%), Positives = 34/76 (44%) Frame = -2 Query: 230 ILRALALQESPGLLILGKQAIDDDCSQTGRMLAALLNWPQGTFASKVIIXKDKQKATVER 51 + RAL E L+I G ++ D ++A L PQ T + + + K T ER Sbjct: 108 LARALGTIEGTELVIAGNESTDGVGGVVPAIIAEYLGLPQLTHLRTISV--EGGKITGER 165 Query: 50 EVDGGTEXICLDLPAV 3 E D G + LPAV Sbjct: 166 ETDEGVFTLEAVLPAV 181 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 23,691,802 Number of Sequences: 219361 Number of extensions: 301267 Number of successful extensions: 681 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 658 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 665 length of database: 80,573,946 effective HSP length: 55 effective length of database: 68,509,091 effective search space used: 1644218184 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
