ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27k08 |
|---|---|
| Clone Library Name | barley_pub |
>RBS3_WHEAT (P07398) Ribulose bisphosphate carboxylase small chain clone 512| (EC 4.1.1.39) (RuBisCO small subunit) (Fragment) Length = 113 Score = 40.8 bits (94), Expect = 0.001 Identities = 19/25 (76%), Positives = 19/25 (76%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXGC*EXGKA 32 DNMRQVQCVS AFK GC E GKA Sbjct: 89 DNMRQVQCVSFIAFKPPGCEESGKA 113
>RBS_HORVU (Q40004) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 174 Score = 40.8 bits (94), Expect = 0.001 Identities = 19/25 (76%), Positives = 19/25 (76%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXGC*EXGKA 32 DNMRQVQCVS AFK GC E GKA Sbjct: 150 DNMRQVQCVSFIAFKPPGCQESGKA 174
>RBS2_WHEAT (P26667) Ribulose bisphosphate carboxylase small chain PW9,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit PW9) Length = 175 Score = 39.7 bits (91), Expect = 0.002 Identities = 18/25 (72%), Positives = 19/25 (76%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXGC*EXGKA 32 DNMRQVQCVS AF+ GC E GKA Sbjct: 151 DNMRQVQCVSFIAFRPPGCEESGKA 175
>RBS1_WHEAT (P00871) Ribulose bisphosphate carboxylase small chain PWS4.3,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit PWS4.3) Length = 174 Score = 38.5 bits (88), Expect = 0.005 Identities = 17/25 (68%), Positives = 19/25 (76%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXGC*EXGKA 32 DN+RQVQCVS AF+ GC E GKA Sbjct: 150 DNLRQVQCVSFIAFRPPGCEESGKA 174
>RBS_AEGTA (Q38793) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 175 Score = 33.9 bits (76), Expect = 0.13 Identities = 17/25 (68%), Positives = 17/25 (68%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXGC*EXGKA 32 DNMRQVQ VS A K GC E GKA Sbjct: 151 DNMRQVQSVSFIASKPPGCEESGKA 175
>RBS3_ORYSA (P18567) Ribulose bisphosphate carboxylase small chain C,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit C) Length = 175 Score = 30.4 bits (67), Expect = 1.5 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXGC*EXG 38 DN+RQVQ +S A+K GC E G Sbjct: 151 DNVRQVQLISFIAYKPPGCEESG 173
>RBS2_ORYSA (P18566) Ribulose bisphosphate carboxylase small chain A,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit A) Length = 175 Score = 30.4 bits (67), Expect = 1.5 Identities = 13/23 (56%), Positives = 16/23 (69%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXGC*EXG 38 DN+RQVQ +S A+K GC E G Sbjct: 151 DNVRQVQLISFIAYKPPGCEESG 173
>RBS_PYRPY (P24007) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 183 Score = 28.9 bits (63), Expect = 4.2 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXG 53 DN+RQVQC+S A+K G Sbjct: 165 DNVRQVQCISFIAYKPAG 182
>RBS_MALSP (Q02980) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 183 Score = 28.9 bits (63), Expect = 4.2 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXG 53 DN+RQVQC+S A+K G Sbjct: 165 DNVRQVQCISFIAYKPAG 182
>RBS3_AMAHP (Q9XGX4) Ribulose bisphosphate carboxylase small chain 3,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3) Length = 180 Score = 28.9 bits (63), Expect = 4.2 Identities = 13/18 (72%), Positives = 13/18 (72%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXG 53 DN RQVQCVS AFK G Sbjct: 162 DNKRQVQCVSFIAFKPPG 179
>RBS_HEVBR (P29684) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 183 Score = 28.5 bits (62), Expect = 5.5 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXG 53 DN+RQVQC+S A+K G Sbjct: 164 DNVRQVQCISFLAYKPKG 181
>RBS1_AMAHP (Q42516) Ribulose bisphosphate carboxylase small chain 1,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1) Length = 183 Score = 28.5 bits (62), Expect = 5.5 Identities = 12/18 (66%), Positives = 13/18 (72%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXG 53 DN RQVQCVS A+K G Sbjct: 164 DNKRQVQCVSFIAYKPAG 181
>RBS3_SOLTU (P32764) Ribulose bisphosphate carboxylase small chain 3,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3) Length = 181 Score = 28.5 bits (62), Expect = 5.5 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXG 53 DN+RQVQC+S A+K G Sbjct: 163 DNVRQVQCISFIAYKPEG 180
>RBS2_NICSY (P22433) Ribulose bisphosphate carboxylase small chain S41,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit S41) Length = 181 Score = 28.5 bits (62), Expect = 5.5 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXG 53 DN+RQVQC+S A+K G Sbjct: 163 DNVRQVQCISFIAYKPEG 180
>RBS1_SOLTU (P26574) Ribulose bisphosphate carboxylase small chain 1,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1) Length = 181 Score = 28.5 bits (62), Expect = 5.5 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXG 53 DN+RQVQC+S A+K G Sbjct: 163 DNVRQVQCISFIAYKPEG 180
>RBS1_LYCES (P08706) Ribulose bisphosphate carboxylase small chain 1,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1) (LESS17) Length = 181 Score = 28.5 bits (62), Expect = 5.5 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXG 53 DN+RQVQC+S A+K G Sbjct: 163 DNVRQVQCISFIAYKPEG 180
>RBS0_SOLTU (P10647) Ribulose bisphosphate carboxylase small chain C,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit C) Length = 181 Score = 28.5 bits (62), Expect = 5.5 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXG 53 DN+RQVQC+S A+K G Sbjct: 163 DNVRQVQCISFIAYKPEG 180
>RBS_GOSHI (P31333) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 182 Score = 28.5 bits (62), Expect = 5.5 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXG 53 DN+RQVQC+S A+K G Sbjct: 164 DNVRQVQCISFIAYKPKG 181
>RBS_TOBAC (P69249) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) (TSSU3-8) Length = 180 Score = 28.5 bits (62), Expect = 5.5 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXG 53 DN+RQVQC+S A+K G Sbjct: 162 DNVRQVQCISFIAYKPEG 179
>RBSC_SOLTU (P26577) Ribulose bisphosphate carboxylase small chain 2C,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2C) Length = 180 Score = 28.5 bits (62), Expect = 5.5 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXG 53 DN+RQVQC+S A+K G Sbjct: 162 DNVRQVQCISFIAYKPEG 179
>RBSB_SOLTU (P26576) Ribulose bisphosphate carboxylase small chain 2B,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2B) Length = 180 Score = 28.5 bits (62), Expect = 5.5 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXG 53 DN+RQVQC+S A+K G Sbjct: 162 DNVRQVQCISFIAYKPEG 179
>RBSA_SOLTU (P26575) Ribulose bisphosphate carboxylase small chain 2A,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2A) Length = 180 Score = 28.5 bits (62), Expect = 5.5 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXG 53 DN+RQVQC+S A+K G Sbjct: 162 DNVRQVQCISFIAYKPEG 179
>RBS8_NICPL (P26573) Ribulose bisphosphate carboxylase small chain 8B,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 8B) Length = 180 Score = 28.5 bits (62), Expect = 5.5 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXG 53 DN+RQVQC+S A+K G Sbjct: 162 DNVRQVQCISFIAYKPEG 179
>RBS3B_LYCES (P05349) Ribulose bisphosphate carboxylase small chain 3B,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3B) Length = 180 Score = 28.5 bits (62), Expect = 5.5 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXG 53 DN+RQVQC+S A+K G Sbjct: 162 DNVRQVQCISFIAYKPEG 179
>RBS3A_LYCES (P07180) Ribulose bisphosphate carboxylase small chain 3A/3C,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 3A/3C) Length = 180 Score = 28.5 bits (62), Expect = 5.5 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXG 53 DN+RQVQC+S A+K G Sbjct: 162 DNVRQVQCISFIAYKPEG 179
>RBS2A_LYCES (P07179) Ribulose bisphosphate carboxylase small chain 2A,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 2A) (LESS 5) Length = 180 Score = 28.5 bits (62), Expect = 5.5 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXG 53 DN+RQVQC+S A+K G Sbjct: 162 DNVRQVQCISFIAYKPEG 179
>RBS1_NICSY (P69250) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 180 Score = 28.5 bits (62), Expect = 5.5 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXG 53 DN+RQVQC+S A+K G Sbjct: 162 DNVRQVQCISFIAYKPEG 179
>RBS1_SOYBN (P00865) Ribulose bisphosphate carboxylase small chain 1,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 1) Length = 178 Score = 28.1 bits (61), Expect = 7.2 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXG 53 DN+RQVQC+S A+K G Sbjct: 160 DNVRQVQCISFIAYKPPG 177
>RBS_MANES (Q42915) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 182 Score = 28.1 bits (61), Expect = 7.2 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXG 53 DN+RQVQC+S A+K G Sbjct: 164 DNVRQVQCISFLAYKPPG 181
>RBS2_PETHY (P04715) Ribulose bisphosphate carboxylase small chain SSU11A,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit SSU11A) Length = 180 Score = 28.1 bits (61), Expect = 7.2 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXG 53 DN+RQVQC+S A+K G Sbjct: 162 DNVRQVQCISFIAYKPPG 179
>RBS1_PETHY (P04714) Ribulose bisphosphate carboxylase small chain SSU8,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit SSU8) Length = 180 Score = 28.1 bits (61), Expect = 7.2 Identities = 11/18 (61%), Positives = 14/18 (77%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXG 53 DN+RQVQC+S A+K G Sbjct: 162 DNVRQVQCISFIAYKPPG 179
>RBS4_MESCR (Q08184) Ribulose bisphosphate carboxylase small chain 4,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 4) Length = 183 Score = 27.7 bits (60), Expect = 9.4 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -1 Query: 106 DNMRQVQCVSLXAFK 62 DN+RQVQCVS A+K Sbjct: 163 DNVRQVQCVSFIAYK 177
>RBS6_MESCR (Q08186) Ribulose bisphosphate carboxylase small chain 6,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 6) Length = 186 Score = 27.7 bits (60), Expect = 9.4 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -1 Query: 106 DNMRQVQCVSLXAFK 62 DN+RQVQCVS A+K Sbjct: 166 DNVRQVQCVSFIAYK 180
>RBS5_MESCR (Q08185) Ribulose bisphosphate carboxylase small chain 5,| chloroplast precursor (EC 4.1.1.39) (RuBisCO small subunit 5) Length = 182 Score = 27.7 bits (60), Expect = 9.4 Identities = 11/15 (73%), Positives = 13/15 (86%) Frame = -1 Query: 106 DNMRQVQCVSLXAFK 62 DN+RQVQCVS A+K Sbjct: 162 DNVRQVQCVSFIAYK 176
>RBS_MUSAC (O24045) Ribulose bisphosphate carboxylase small chain, chloroplast| precursor (EC 4.1.1.39) (RuBisCO small subunit) Length = 180 Score = 27.7 bits (60), Expect = 9.4 Identities = 11/18 (61%), Positives = 13/18 (72%) Frame = -1 Query: 106 DNMRQVQCVSLXAFKXXG 53 DN RQVQC+S A+K G Sbjct: 162 DNNRQVQCISFIAYKPTG 179 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 8,484,344 Number of Sequences: 219361 Number of extensions: 40475 Number of successful extensions: 100 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 100 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 100 length of database: 80,573,946 effective HSP length: 11 effective length of database: 78,160,975 effective search space used: 1875863400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
