ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbasd27j22 |
|---|---|
| Clone Library Name | barley_pub |
>RPOC2_SACOF (Q6ENX1) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1534 Score = 349 bits (895), Expect(2) = e-101 Identities = 182/187 (97%), Positives = 182/187 (97%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 RSS ITQGLPKV QIFEARSIDSLSPNLERRIEDWNER PRILGVPWGFLIGAELTIAQS Sbjct: 1282 RSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQS 1341 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 RISLVNKI KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA Sbjct: 1342 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 1401 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAA RGRIDWLKGLKENVV Sbjct: 1402 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1461 Query: 68 LGGIIPV 48 LGGIIPV Sbjct: 1462 LGGIIPV 1468 Score = 41.2 bits (95), Expect(2) = e-101 Identities = 18/22 (81%), Positives = 18/22 (81%) Frame = -3 Query: 66 GGDYTCGTGFQKFVHRSPQDKN 1 GG GTGFQKFVHRSPQDKN Sbjct: 1463 GGIIPVGTGFQKFVHRSPQDKN 1484
>RPOC2_SACHY (Q6L3A5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1534 Score = 349 bits (895), Expect(2) = e-101 Identities = 182/187 (97%), Positives = 182/187 (97%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 RSS ITQGLPKV QIFEARSIDSLSPNLERRIEDWNER PRILGVPWGFLIGAELTIAQS Sbjct: 1282 RSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQS 1341 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 RISLVNKI KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA Sbjct: 1342 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 1401 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAA RGRIDWLKGLKENVV Sbjct: 1402 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1461 Query: 68 LGGIIPV 48 LGGIIPV Sbjct: 1462 LGGIIPV 1468 Score = 41.2 bits (95), Expect(2) = e-101 Identities = 18/22 (81%), Positives = 18/22 (81%) Frame = -3 Query: 66 GGDYTCGTGFQKFVHRSPQDKN 1 GG GTGFQKFVHRSPQDKN Sbjct: 1463 GGIIPVGTGFQKFVHRSPQDKN 1484
>RPOC2_MAIZE (P16025) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1527 Score = 349 bits (895), Expect(2) = e-101 Identities = 182/187 (97%), Positives = 182/187 (97%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 RSS ITQGLPKV QIFEARSIDSLSPNLERRIEDWNER PRILGVPWGFLIGAELTIAQS Sbjct: 1275 RSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQS 1334 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 RISLVNKI KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA Sbjct: 1335 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 1394 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAA RGRIDWLKGLKENVV Sbjct: 1395 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1454 Query: 68 LGGIIPV 48 LGGIIPV Sbjct: 1455 LGGIIPV 1461 Score = 41.2 bits (95), Expect(2) = e-101 Identities = 18/22 (81%), Positives = 18/22 (81%) Frame = -3 Query: 66 GGDYTCGTGFQKFVHRSPQDKN 1 GG GTGFQKFVHRSPQDKN Sbjct: 1456 GGIIPVGTGFQKFVHRSPQDKN 1477
>RPOC2_WHEAT (Q9XPS9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1479 Score = 347 bits (889), Expect(2) = e-101 Identities = 181/187 (96%), Positives = 181/187 (96%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 RSS ITQGLPKV QIFEARSIDSLSPNLERRIEDWNER PRILGVPWGFLIGAELTIAQS Sbjct: 1238 RSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIPRILGVPWGFLIGAELTIAQS 1297 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 RISLVNKI KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVF PGELIGLLRAERA Sbjct: 1298 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFSPGELIGLLRAERA 1357 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAA RGRIDWLKGLKENVV Sbjct: 1358 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1417 Query: 68 LGGIIPV 48 LGGIIPV Sbjct: 1418 LGGIIPV 1424 Score = 41.2 bits (95), Expect(2) = e-101 Identities = 18/22 (81%), Positives = 18/22 (81%) Frame = -3 Query: 66 GGDYTCGTGFQKFVHRSPQDKN 1 GG GTGFQKFVHRSPQDKN Sbjct: 1419 GGIIPVGTGFQKFVHRSPQDKN 1440
>RPOC2_ORYNI (Q6ENI2) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1513 Score = 342 bits (878), Expect(2) = 5e-99 Identities = 179/187 (95%), Positives = 179/187 (95%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 RSS ITQGLPKV QIFEARSIDSLSPNLERRIEDWNER PRILG PWGFLIGAELTIAQS Sbjct: 1263 RSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIPRILGGPWGFLIGAELTIAQS 1322 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 RISLVNKI KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVF PGELIGLLRAERA Sbjct: 1323 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFSPGELIGLLRAERA 1382 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 GRALDESIYYRAILLGITR SLNTQSFISEASFQETARVLAKAA RGRIDWLKGLKENVV Sbjct: 1383 GRALDESIYYRAILLGITRVSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1442 Query: 68 LGGIIPV 48 LGGIIPV Sbjct: 1443 LGGIIPV 1449 Score = 38.9 bits (89), Expect(2) = 5e-99 Identities = 17/22 (77%), Positives = 17/22 (77%) Frame = -3 Query: 66 GGDYTCGTGFQKFVHRSPQDKN 1 GG GTGFQKFVHR PQDKN Sbjct: 1444 GGIIPVGTGFQKFVHRYPQDKN 1465
>RPOC2_ORYSA (P12093) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1513 Score = 343 bits (879), Expect = 3e-94 Identities = 183/204 (89%), Positives = 184/204 (90%), Gaps = 10/204 (4%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 RSS ITQGLPKV QIFEARSIDSLSPNLERRIEDWNER PRILG PWGFLIGAELTIAQS Sbjct: 1263 RSSDITQGLPKVEQIFEARSIDSLSPNLERRIEDWNERIPRILGGPWGFLIGAELTIAQS 1322 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 RISLVNKI KVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVF PGELIGLLRAERA Sbjct: 1323 RISLVNKIQKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFSPGELIGLLRAERA 1382 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 GRALDESIYYRAILLGITR SLNTQSFISEASFQETARVLAKAA RGRIDWLKGLKENVV Sbjct: 1383 GRALDESIYYRAILLGITRVSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1442 Query: 68 LGGIIPV----------VPDSKNL 27 LGGIIPV P +KNL Sbjct: 1443 LGGIIPVGTGFQKFVHRYPQNKNL 1466 Score = 37.0 bits (84), Expect = 0.045 Identities = 16/22 (72%), Positives = 17/22 (77%) Frame = -3 Query: 66 GGDYTCGTGFQKFVHRSPQDKN 1 GG GTGFQKFVHR PQ+KN Sbjct: 1444 GGIIPVGTGFQKFVHRYPQNKN 1465
>RPOC2_PHAAO (Q3BAQ2) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1388 Score = 313 bits (803), Expect(2) = 7e-89 Identities = 162/187 (86%), Positives = 171/187 (91%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 RS ITQGLPKV QI E RSIDS+S NLERR+E W+ER RILG+PWGFLIGAELTIAQS Sbjct: 1140 RSGDITQGLPKVEQILEVRSIDSISMNLERRVEGWDERIRRILGIPWGFLIGAELTIAQS 1199 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 RISLVNKI KVYRSQGVQIHNRH+EII+RQVTS+V VSEDGMSNVFLPGE IGLLRAERA Sbjct: 1200 RISLVNKIQKVYRSQGVQIHNRHLEIIVRQVTSRVLVSEDGMSNVFLPGEFIGLLRAERA 1259 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 GR L ESI YRAILLGIT++SLNTQSFISEASFQETARVLAKAA RGRIDWLKGLKENVV Sbjct: 1260 GRVLAESICYRAILLGITKSSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1319 Query: 68 LGGIIPV 48 LGGIIPV Sbjct: 1320 LGGIIPV 1326 Score = 33.9 bits (76), Expect(2) = 7e-89 Identities = 15/22 (68%), Positives = 15/22 (68%) Frame = -3 Query: 66 GGDYTCGTGFQKFVHRSPQDKN 1 GG GTGF K VHRS QDKN Sbjct: 1321 GGIIPVGTGFNKLVHRSKQDKN 1342
>RPOC2_SPIOL (P11704) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1361 Score = 313 bits (801), Expect(2) = 1e-86 Identities = 161/187 (86%), Positives = 170/187 (90%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 RS ITQGLPKV Q+ E RSIDS+S NLE+RI+ WNER RILG PWGFLIGAELTIAQS Sbjct: 1126 RSGDITQGLPKVEQVLEVRSIDSISINLEKRIDSWNERITRILGSPWGFLIGAELTIAQS 1185 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 RISLVNKI KVYRSQGVQIHNRHIEII+RQ+TSKV VSEDGMSNVFLPGELIGL RAER Sbjct: 1186 RISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLFRAERT 1245 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 GRAL+E+I YRA LLGITRASLNTQSFISEASFQETARVLAKAA RGRIDWLKGLKENVV Sbjct: 1246 GRALEEAICYRATLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1305 Query: 68 LGGIIPV 48 LGG+IPV Sbjct: 1306 LGGMIPV 1312 Score = 27.3 bits (59), Expect(2) = 1e-86 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = -3 Query: 66 GGDYTCGTGFQKFVHRSPQDKN 1 GG GTGF+ FVH S Q K+ Sbjct: 1307 GGMIPVGTGFKGFVHHSSQHKD 1328
>RPOC2_NYMAL (Q6EW58) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1401 Score = 310 bits (793), Expect(2) = 4e-86 Identities = 157/187 (83%), Positives = 170/187 (90%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 RS IT GLPKV Q+ E RSIDS+S NLE+R+E WNE ILG+PWGFLIGAELTIAQS Sbjct: 1138 RSGDITHGLPKVEQVLEVRSIDSISMNLEKRVEGWNEHITGILGIPWGFLIGAELTIAQS 1197 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 R+SLVNKI KVYRSQGVQIHN+HIEII+RQ+TSKV VSEDGMSNVF PGELIGLLRAERA Sbjct: 1198 RVSLVNKIQKVYRSQGVQIHNKHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERA 1257 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 GRAL+E+I YRA+LLGITRASLNTQSFISEASFQETARVLAKAA RGRIDWLKGLKENVV Sbjct: 1258 GRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1317 Query: 68 LGGIIPV 48 LGG+IPV Sbjct: 1318 LGGMIPV 1324 Score = 28.5 bits (62), Expect(2) = 4e-86 Identities = 12/22 (54%), Positives = 15/22 (68%) Frame = -3 Query: 66 GGDYTCGTGFQKFVHRSPQDKN 1 GG GTGF++FVHRS + N Sbjct: 1319 GGMIPVGTGFKRFVHRSREYNN 1340
>RPOC2_CALFE (Q7YJY0) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1377 Score = 315 bits (808), Expect = 5e-86 Identities = 162/194 (83%), Positives = 175/194 (90%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 RS ITQGLPKV Q+ EARSIDS+S NLE+R+E WNER +ILG+PWGFLIGAELTIAQS Sbjct: 1136 RSGDITQGLPKVEQVLEARSIDSISMNLEKRVEGWNERITKILGIPWGFLIGAELTIAQS 1195 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 RISLVNKI KVYRSQGVQIHNRHIEII+RQ+TS+V VSEDGMSNVF PGELIGLLRAER Sbjct: 1196 RISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSRVLVSEDGMSNVFSPGELIGLLRAERT 1255 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 GRAL+E+I YRAILLGITRASLNTQSFISEASFQETARVLAKAA RGRIDWLKGLKENVV Sbjct: 1256 GRALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1315 Query: 68 LGGIIPVVPDSKNL 27 LGG++PV K L Sbjct: 1316 LGGMMPVGTGFKGL 1329
>RPOC2_SILLA (Q589B8) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1373 Score = 308 bits (790), Expect(2) = 7e-86 Identities = 155/187 (82%), Positives = 170/187 (90%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 RS ITQGLPKV Q+ E RS++S+S NLE+RI WNER +ILG+PWGFL+GAELTIAQS Sbjct: 1128 RSGDITQGLPKVEQVLEVRSVESISMNLEKRINGWNERIKKILGIPWGFLVGAELTIAQS 1187 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 RISLVNKI KVYRSQGVQIH+RHIEII+RQ+TSKV VSEDGMSN+FLPGELIGL RAER Sbjct: 1188 RISLVNKIQKVYRSQGVQIHDRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLFRAERT 1247 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 GRAL+E+I YR ILLGITRASLNTQSFISEASFQETARVLAKAA RGRIDWLKGLKENVV Sbjct: 1248 GRALEEAICYRTILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1307 Query: 68 LGGIIPV 48 LGG+IPV Sbjct: 1308 LGGMIPV 1314 Score = 28.9 bits (63), Expect(2) = 7e-86 Identities = 13/22 (59%), Positives = 15/22 (68%) Frame = -3 Query: 66 GGDYTCGTGFQKFVHRSPQDKN 1 GG GTGF+ FVHRS Q K+ Sbjct: 1309 GGMIPVGTGFKGFVHRSNQHKS 1330
>RPOC2_EUCGG (Q49L08) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 314 bits (804), Expect = 1e-85 Identities = 164/202 (81%), Positives = 176/202 (87%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 RS ITQGLPKV Q+ E RSIDS+S NLE+RIE WNE +ILG+PWGFLIGAELTI QS Sbjct: 1142 RSGDITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNEHIKKILGIPWGFLIGAELTIVQS 1201 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 RISLVNKI KVYRSQGVQIHNRHIEII+RQ+TSKV VSEDGMSNVFLPGELIGLLRA R Sbjct: 1202 RISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLRAART 1261 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 GRAL+ESI YRAILLGITRASLNTQSFISEASFQETARVLAKAA RGRIDWLKGLKENVV Sbjct: 1262 GRALEESICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1321 Query: 68 LGGIIPVVPDSKNLCIVPHKTR 3 +GG+IPV K L H++R Sbjct: 1322 IGGMIPVGTGFKGLV---HRSR 1340
>RPOC2_SOLTU (Q2VEI6) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 311 bits (796), Expect = 1e-84 Identities = 158/193 (81%), Positives = 172/193 (89%) Frame = -1 Query: 605 SSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQSR 426 S ITQGLPKV Q+ E RSIDS+S NLE+R+E WN+ PRILG+PWGFLIGAELTIAQSR Sbjct: 1143 SDDITQGLPKVEQVLEVRSIDSISMNLEKRVESWNKCIPRILGIPWGFLIGAELTIAQSR 1202 Query: 425 ISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG 246 ISLVNKI +VYRSQGVQIHNRHIEII+RQ+TSKV +SEDGMSNVF PGELIGLLRAER G Sbjct: 1203 ISLVNKIQQVYRSQGVQIHNRHIEIIVRQITSKVLISEDGMSNVFSPGELIGLLRAERMG 1262 Query: 245 RALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVL 66 RAL+E+I YR +LLGITRASLNTQSFISEASFQETARVLAKAA RGRIDWLKGLKENVVL Sbjct: 1263 RALEEAICYRVVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVVL 1322 Query: 65 GGIIPVVPDSKNL 27 GG+IPV K L Sbjct: 1323 GGVIPVGTGFKGL 1335
>RPOC2_ACOCL (Q3V544) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 310 bits (795), Expect = 2e-84 Identities = 161/202 (79%), Positives = 176/202 (87%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 RS ITQGLPKV Q+ E RSIDS+S NLE+R+E WNE +ILG+PWGFLIGAELTIAQS Sbjct: 1135 RSGDITQGLPKVEQVLEVRSIDSISTNLEKRVEGWNEHITKILGIPWGFLIGAELTIAQS 1194 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 RISLVNKI KVYRSQGVQIHN+HIEII+RQ+TSKV VSEDGMSNVF PGELIGLLRAER Sbjct: 1195 RISLVNKIQKVYRSQGVQIHNKHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERT 1254 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 GRAL+E+I YRAILLGITRASLNTQSFISEASFQETARVLAKAA RGR+DWLKGLKENVV Sbjct: 1255 GRALEEAICYRAILLGITRASLNTQSFISEASFQETARVLAKAALRGRVDWLKGLKENVV 1314 Query: 68 LGGIIPVVPDSKNLCIVPHKTR 3 LG +IPV K L H++R Sbjct: 1315 LGAMIPVGTGFKALV---HRSR 1333
>RPOC2_NICTO (Q33C48) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 310 bits (794), Expect = 2e-84 Identities = 160/194 (82%), Positives = 172/194 (88%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 RS ITQGLPKV Q+ E RSIDS+S NLE+RIE WN+ RILG+PWGFLIGAELTIAQS Sbjct: 1142 RSGDITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNKCITRILGIPWGFLIGAELTIAQS 1201 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 RISLVNKI +VYRSQGVQIHNRHIEII+RQ+TSKV VSEDGMSNVF PGELIGLLRAER Sbjct: 1202 RISLVNKIQQVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERM 1261 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 GRAL+E+I YR +LLGITRASLNTQSFISEASFQETARVLAKAA RGRIDWLKGLKENVV Sbjct: 1262 GRALEEAICYRVVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1321 Query: 68 LGGIIPVVPDSKNL 27 LGG+IPV K L Sbjct: 1322 LGGVIPVGTGFKGL 1335
>RPOC2_CUCSA (Q4VZP3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1394 Score = 310 bits (794), Expect = 2e-84 Identities = 160/202 (79%), Positives = 177/202 (87%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 RS ITQGLPKV Q+ E RSIDS+S +LE+RIE WNER RILG+PWGFLIGAELTI QS Sbjct: 1144 RSGDITQGLPKVEQVLEVRSIDSISMSLEKRIEGWNERITRILGIPWGFLIGAELTIVQS 1203 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 RISLVNKI KVYRSQGV+IHNRHIEII+RQ+TSKV VSEDGMSNVF PGELIGLLRAER Sbjct: 1204 RISLVNKIQKVYRSQGVEIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERT 1263 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 GRAL+E+I YRA+LLGIT+ASLNTQSFISEASFQETARVLAKAA RGRIDWL+GLKENVV Sbjct: 1264 GRALEEAICYRAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLRGLKENVV 1323 Query: 68 LGGIIPVVPDSKNLCIVPHKTR 3 LGG+IPV + L H++R Sbjct: 1324 LGGMIPVGTGFRELA---HRSR 1342
>RPOC2_OENHO (Q9MTM3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 310 bits (794), Expect = 2e-84 Identities = 161/203 (79%), Positives = 174/203 (85%), Gaps = 2/203 (0%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 RS ITQGLPKV Q+ E RS+DS+S NLE+R+E+WNE RILG PWGFLIGAELTI QS Sbjct: 1137 RSGDITQGLPKVEQVLEVRSVDSISVNLEKRVENWNEHITRILGFPWGFLIGAELTIVQS 1196 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 RISLVNKI KVYRSQGVQIHNRHIEII+RQ+TSKV VSEDGMSNVFLP ELIGLLRAER Sbjct: 1197 RISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPRELIGLLRAERT 1256 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 GRAL+ESI Y+A LLGITR SLNTQSFISEASFQETARVLAKAA RGRIDWLKGLKENVV Sbjct: 1257 GRALEESICYKAFLLGITRTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1316 Query: 68 LGGIIPVVPDSKNL--CIVPHKT 6 +GG+IPV K L C HK+ Sbjct: 1317 IGGMIPVGTGFKGLVHCSKQHKS 1339
>RPOC2_SINAL (Q9THV5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1384 Score = 310 bits (793), Expect = 3e-84 Identities = 158/194 (81%), Positives = 173/194 (89%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 RS ITQGLPKV Q+ E RSIDS+S NLE+RI+ WN RILG+PWGFLIGAELTI QS Sbjct: 1141 RSGDITQGLPKVEQVLEVRSIDSISLNLEKRIKGWNRCITRILGIPWGFLIGAELTIVQS 1200 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 RISLVNKI +VYRSQGVQIHNRHIEII+RQ+TSKV VSE+GMSNVFLPGELIGLLRAER Sbjct: 1201 RISLVNKIKQVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRAERT 1260 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 GRAL+E+I YRA+LLGITRASLNTQSFISEASFQETARVLAKAA RGRIDWLKGLKENVV Sbjct: 1261 GRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1320 Query: 68 LGGIIPVVPDSKNL 27 LGG+IP P S+ + Sbjct: 1321 LGGVIPPGPGSQRI 1334
>RPOC2_ATRBE (Q8S8Y1) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1389 Score = 310 bits (793), Expect = 3e-84 Identities = 159/194 (81%), Positives = 172/194 (88%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 RS ITQGLPKV Q+ E RSIDS+S NLE+R+E WN+ RILG+PWGFLIGAELTIAQS Sbjct: 1139 RSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNKCITRILGIPWGFLIGAELTIAQS 1198 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 RISLVNKI +VYRSQGVQIHNRHIEII+RQ+TSKV VSEDGMSNVF PGELIGLLRAER Sbjct: 1199 RISLVNKIQQVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERM 1258 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 GRAL+E+I YR +LLGITRASLNTQSFISEASFQETARVLAKAA RGRIDWLKGLKENVV Sbjct: 1259 GRALEEAICYRVVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1318 Query: 68 LGGIIPVVPDSKNL 27 LGG+IPV K L Sbjct: 1319 LGGVIPVGTGFKGL 1332
>RPOC2_TOBAC (P38550) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1388 Score = 309 bits (791), Expect = 5e-84 Identities = 158/194 (81%), Positives = 172/194 (88%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 RS ITQGLPKV Q+ E RS+DS+S NLE+RIE WN+ RILG+PWGFLIGAELTIAQS Sbjct: 1138 RSGDITQGLPKVEQVLEVRSVDSISMNLEKRIEGWNKCITRILGIPWGFLIGAELTIAQS 1197 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 RISLVNKI +VYRSQGVQIHNRH+EII+RQ+TSKV VSEDGMSNVF PGELIGLLRAER Sbjct: 1198 RISLVNKIQQVYRSQGVQIHNRHLEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERM 1257 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 GRAL+E+I YR +LLGITRASLNTQSFISEASFQETARVLAKAA RGRIDWLKGLKENVV Sbjct: 1258 GRALEEAICYRVVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1317 Query: 68 LGGIIPVVPDSKNL 27 LGG+IPV K L Sbjct: 1318 LGGVIPVGTGFKGL 1331
>RPOC2_NICSY (Q3C1G9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1392 Score = 309 bits (791), Expect = 5e-84 Identities = 158/194 (81%), Positives = 172/194 (88%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 RS ITQGLPKV Q+ E RS+DS+S NLE+RIE WN+ RILG+PWGFLIGAELTIAQS Sbjct: 1142 RSGDITQGLPKVEQVLEVRSVDSISMNLEKRIEGWNKCITRILGIPWGFLIGAELTIAQS 1201 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 RISLVNKI +VYRSQGVQIHNRH+EII+RQ+TSKV VSEDGMSNVF PGELIGLLRAER Sbjct: 1202 RISLVNKIQQVYRSQGVQIHNRHLEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAERM 1261 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 GRAL+E+I YR +LLGITRASLNTQSFISEASFQETARVLAKAA RGRIDWLKGLKENVV Sbjct: 1262 GRALEEAICYRVVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1321 Query: 68 LGGIIPVVPDSKNL 27 LGG+IPV K L Sbjct: 1322 LGGVIPVGTGFKGL 1335
>RPOC2_ARATH (P56764) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1376 Score = 308 bits (790), Expect = 6e-84 Identities = 157/186 (84%), Positives = 170/186 (91%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 RS ITQGLPKV Q+ E RSIDS+S NLE+RI+ WN+ RILG+PWGFLIGAELTI QS Sbjct: 1133 RSGDITQGLPKVEQVLEVRSIDSISLNLEKRIKGWNKCITRILGIPWGFLIGAELTIVQS 1192 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 RISLVNKI KVYRSQGVQIHNRHIEII+RQ+TSKV VSE+GMSNVFLPGELIGLLRAER Sbjct: 1193 RISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEEGMSNVFLPGELIGLLRAERT 1252 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 GRAL+E+I YRA+LLGITRASLNTQSFISEASFQETARVLAKAA RGRIDWLKGLKENVV Sbjct: 1253 GRALEEAICYRAVLLGITRASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1312 Query: 68 LGGIIP 51 LGG+IP Sbjct: 1313 LGGVIP 1318
>RPOC2_PANGI (Q68S16) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1387 Score = 308 bits (789), Expect = 8e-84 Identities = 161/209 (77%), Positives = 178/209 (85%), Gaps = 7/209 (3%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 RS ITQGLPKV Q+ E RSIDS+S NLE+R+E WNE R LG+PWGFLIGAELTI QS Sbjct: 1137 RSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNECITRNLGIPWGFLIGAELTIVQS 1196 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 RISLVNKI KVYRSQGVQIHNRHIEII+RQ+TSKV VSEDGMSNVFLPGE IGLLRAER Sbjct: 1197 RISLVNKIQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGEFIGLLRAERM 1256 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 GRAL+E+I Y+A+LLGIT+ASLNTQSFISEASFQETARVLAKAA RGRIDWLKGLKENVV Sbjct: 1257 GRALEEAICYQAVLLGITKASLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1316 Query: 68 LGGIIPV-------VPDSKNLCIVPHKTR 3 LGG+IPV VP S+ +P +T+ Sbjct: 1317 LGGMIPVGTGFKGLVPPSRQHKNIPLETK 1345
>RPOC2_PEA (P12227) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) (Fragment) Length = 1163 Score = 307 bits (786), Expect = 2e-83 Identities = 158/202 (78%), Positives = 176/202 (87%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 RS ITQGLPKV QI E RSIDS+S NLE+RI+ WNE +I+G+PWGFLIGAELTIAQS Sbjct: 927 RSGDITQGLPKVEQILEIRSIDSISMNLEKRIDAWNECITKIIGIPWGFLIGAELTIAQS 986 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 RISLVNKI KVYRSQGV IHNRHIEII+RQ+TSKV VSEDGMSN+FLPGELIGLLRAER Sbjct: 987 RISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNIFLPGELIGLLRAERT 1046 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 GRAL+E+I YRA+LLG+T+ SLNTQSFISEASFQETARVLAKAA RGRIDWLKGLKENVV Sbjct: 1047 GRALEEAICYRALLLGVTKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENVV 1106 Query: 68 LGGIIPVVPDSKNLCIVPHKTR 3 LGG+IPV K + H++R Sbjct: 1107 LGGMIPVGTGFKR---IMHRSR 1125
>RPOC2_SOYBN (Q8HVY3) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 306 bits (784), Expect = 3e-83 Identities = 154/187 (82%), Positives = 170/187 (90%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 RS ITQGLPKV Q+ E RSIDS+S NLE+R++ WN R +ILG+PWGFLIGAELTIAQS Sbjct: 1140 RSGDITQGLPKVEQVLEVRSIDSISMNLEKRVDTWNGRITKILGIPWGFLIGAELTIAQS 1199 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 RISLVNKI KVYRSQGV IHNRHIEII+RQ+TSKV VSEDGMSNVFLPGELIGLLRAERA Sbjct: 1200 RISLVNKIQKVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFLPGELIGLLRAERA 1259 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 GR+L+E+I YR +LLGIT+ SLNTQSFISEASFQETARVL+KAA RGRIDWLKGLKENVV Sbjct: 1260 GRSLEEAICYRVLLLGITKTSLNTQSFISEASFQETARVLSKAALRGRIDWLKGLKENVV 1319 Query: 68 LGGIIPV 48 LGG+IPV Sbjct: 1320 LGGMIPV 1326
>RPOC2_LOTJA (Q9BBS7) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1332 Score = 301 bits (772), Expect = 7e-82 Identities = 154/187 (82%), Positives = 167/187 (89%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 RS ITQGLPKV Q+ E RSIDS+S NLE+RI+ WNER ILG+PW FLIGAELTIAQS Sbjct: 1115 RSGDITQGLPKVEQVLEVRSIDSISMNLEKRIDAWNERITGILGIPWRFLIGAELTIAQS 1174 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 RISLVNKI +VYRSQGV IHNRHIEII+RQ+TSKV VSEDGMSNVF PGELIGLLRA+R Sbjct: 1175 RISLVNKIQRVYRSQGVHIHNRHIEIIVRQITSKVLVSEDGMSNVFSPGELIGLLRAQRT 1234 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 GRAL+ESI YR +LLGIT+ SLNTQSFISEASFQETARVLAKAA RGRIDWLKGLKEN+V Sbjct: 1235 GRALEESICYRTLLLGITKTSLNTQSFISEASFQETARVLAKAALRGRIDWLKGLKENLV 1294 Query: 68 LGGIIPV 48 LGGIIPV Sbjct: 1295 LGGIIPV 1301
>RPOC2_LACSA (Q56P11) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1381 Score = 300 bits (768), Expect = 2e-81 Identities = 153/187 (81%), Positives = 167/187 (89%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 RS ITQGLPKV Q+ E RSIDS+S NLE+RIE WN+ RILG+PW FLIGAELTI QS Sbjct: 1135 RSGDITQGLPKVEQVLEVRSIDSISMNLEKRIEGWNKSITRILGIPWAFLIGAELTIVQS 1194 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 RISLVNK+ KVYRSQGVQIHNRHIEII+RQ+TSKV VSED MSNVF PGELIGLLRAER Sbjct: 1195 RISLVNKVQKVYRSQGVQIHNRHIEIIVRQITSKVLVSEDEMSNVFSPGELIGLLRAERM 1254 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 GRAL+E+I Y+A+LLGITRAS+NTQSFISEASFQETARVLAKAA GRIDWLKGLKENVV Sbjct: 1255 GRALEEAICYQAVLLGITRASMNTQSFISEASFQETARVLAKAALLGRIDWLKGLKENVV 1314 Query: 68 LGGIIPV 48 LGG+IPV Sbjct: 1315 LGGMIPV 1321
>RPOC2_AMBTC (P60289) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1373 Score = 292 bits (747), Expect(2) = 5e-80 Identities = 150/187 (80%), Positives = 161/187 (86%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 RS ITQGLPKV Q+ E RSIDS+S NLE+R+E WNER LG+PW F I A+LTI QS Sbjct: 1131 RSGDITQGLPKVEQVLEVRSIDSISMNLEKRVEGWNERITGFLGIPWEFFISAQLTIVQS 1190 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 RISLVNKI KVYRSQGVQIHNRHIE I+RQ+TSKV VSEDGMSNVF P ELIGLLRAER Sbjct: 1191 RISLVNKIQKVYRSQGVQIHNRHIETIVRQITSKVLVSEDGMSNVFSPRELIGLLRAERI 1250 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 GRAL++ I YRAILLGITRASLNTQSFISEASFQET RVLAKAA R RIDWLKGLKENVV Sbjct: 1251 GRALEDDICYRAILLGITRASLNTQSFISEASFQETTRVLAKAALRSRIDWLKGLKENVV 1310 Query: 68 LGGIIPV 48 LGG+IPV Sbjct: 1311 LGGMIPV 1317 Score = 25.8 bits (55), Expect(2) = 5e-80 Identities = 11/22 (50%), Positives = 13/22 (59%) Frame = -3 Query: 66 GGDYTCGTGFQKFVHRSPQDKN 1 GG GTGF+ FVH S + N Sbjct: 1312 GGMIPVGTGFKGFVHHSREHNN 1333
>RPOC2_PINKO (Q85X62) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1209 Score = 247 bits (631), Expect = 2e-65 Identities = 127/186 (68%), Positives = 152/186 (81%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 +SS I QGLPKV Q+ EAR +S+S NL+ E+W R LG WG I A +T+ QS Sbjct: 964 KSSDIIQGLPKVEQLSEARLNNSISMNLKESFENWTGDMTRFLGSLWGLFISARITMEQS 1023 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 +I LVN+I KVYRSQGV+I ++HIEII+RQ+TSKV +SEDG +NVF PGELIGL RA+R Sbjct: 1024 QIHLVNQIQKVYRSQGVRIGDKHIEIIVRQMTSKVLISEDGTANVFSPGELIGLSRAQRM 1083 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 RAL+E+IYY+ +LLGITRASLNTQSFISEASFQETARVLAKAA +GRIDWLKGLKENV+ Sbjct: 1084 DRALEETIYYQTMLLGITRASLNTQSFISEASFQETARVLAKAALQGRIDWLKGLKENVI 1143 Query: 68 LGGIIP 51 LGG+IP Sbjct: 1144 LGGMIP 1149
>RPOC2_PINTH (P41606) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1224 Score = 243 bits (621), Expect = 2e-64 Identities = 125/186 (67%), Positives = 151/186 (81%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 +SS I QGLPKV Q+ EAR +S+S NL+ E+W R LG WG I A +T+ QS Sbjct: 978 KSSDIIQGLPKVEQLSEARLNNSISMNLKESFENWTGDMTRFLGSLWGLFISARITMEQS 1037 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 +I LVN+I KVYRSQGV+I ++HIE+I+RQ+TSKV +SEDG +NVF PGELI L RA+R Sbjct: 1038 QIHLVNQIQKVYRSQGVRIGDKHIEVIVRQMTSKVLISEDGTANVFSPGELIVLSRAQRM 1097 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 RAL+E+IYY+ +LLGITRASLNTQSFISEASFQETARVLAKAA +GRIDWLKGLKENV+ Sbjct: 1098 DRALEEAIYYQTMLLGITRASLNTQSFISEASFQETARVLAKAALQGRIDWLKGLKENVI 1157 Query: 68 LGGIIP 51 LGG+IP Sbjct: 1158 LGGMIP 1163
>RPOC2_MARPO (P06274) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1386 Score = 239 bits (610), Expect = 5e-63 Identities = 119/194 (61%), Positives = 152/194 (78%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 +S I QGLPKV Q+ EAR I+S+S NLE EDWN + +G WGF + ++++ Q Sbjct: 1131 KSGDIIQGLPKVEQLLEARPINSVSINLENGFEDWNNDMIKFIGNLWGFFLSTKISMEQG 1190 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 +I+LV++I KVY+SQGVQI N+HIEII+RQ+TSKV EDGM+NVFLPGELI R ++ Sbjct: 1191 QINLVDQIQKVYQSQGVQISNKHIEIIVRQMTSKVITLEDGMTNVFLPGELIEFSRTQKM 1250 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 RAL+E++ Y+ ILLGIT+ASLNTQSFISEASFQET RVLAKAA +GRIDWLKGLKENV+ Sbjct: 1251 NRALEEAVPYKPILLGITKASLNTQSFISEASFQETTRVLAKAALKGRIDWLKGLKENVI 1310 Query: 68 LGGIIPVVPDSKNL 27 LGG++P S+ + Sbjct: 1311 LGGLVPAGTGSQEV 1324
>RPOC2_PHYPA (P60290) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1330 Score = 234 bits (596), Expect = 2e-61 Identities = 118/186 (63%), Positives = 146/186 (78%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 +S I QGLPKV Q+ EAR + +S NLE+ +WN+ G WG+ + A++++ QS Sbjct: 1089 KSGDIIQGLPKVEQLLEARLTNPVSINLEKGFGEWNKDMTNFFGSLWGYFLSAQISMEQS 1148 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 +++LVN+I KVYRSQGV I ++HIEII+RQ+TSKV EDGM+N FLPGELI RA+R Sbjct: 1149 QVNLVNQIQKVYRSQGVNISDKHIEIIVRQMTSKVFTLEDGMTNGFLPGELIEFARAKRM 1208 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 RAL+E I Y+ +LLGIT+ASLNTQSFISEASFQET RVLAKAA RGRIDWLKGLKENV+ Sbjct: 1209 NRALEEVIPYKPVLLGITKASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVI 1268 Query: 68 LGGIIP 51 LGGIIP Sbjct: 1269 LGGIIP 1274
>RPOC2_ANTFO (Q85C71) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1445 Score = 233 bits (595), Expect = 3e-61 Identities = 119/185 (64%), Positives = 146/185 (78%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 +S I QGLPKV Q+ EAR I+S S NLE E+WN + LG WGFL+ A+ T+ QS Sbjct: 1188 KSGDIIQGLPKVEQLLEARPINSTSINLENGFENWNRDMTKSLGSLWGFLLSAKTTMNQS 1247 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 +I+LV++I +VY+SQGV I ++HIEI++RQ+TSKV EDGM+N FLPGELI RA+R Sbjct: 1248 QINLVDQIQEVYQSQGVYISDKHIEIVVRQMTSKVLTLEDGMANGFLPGELIESSRAQRM 1307 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 R L+ES+ Y+ ILLGIT+ASLNTQSFISEASFQET RVLAKAA RGRIDWLKGLKENV+ Sbjct: 1308 NRVLEESVLYKPILLGITKASLNTQSFISEASFQETTRVLAKAALRGRIDWLKGLKENVI 1367 Query: 68 LGGII 54 GG+I Sbjct: 1368 FGGVI 1372
>RPOC2_CHAGL (Q8MA10) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1373 Score = 224 bits (570), Expect = 2e-58 Identities = 110/186 (59%), Positives = 144/186 (77%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 ++ I QGLPKV Q+ EAR +++LS NL+ DWN R+LG PWGF + + + I QS Sbjct: 1124 KTRDIIQGLPKVEQLLEARPLNNLSSNLDFGFLDWNTDISRLLGNPWGFFLSSLIIIRQS 1183 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 ++ LVN+I KVY+SQGVQI ++H+EII+RQ+TS+V +E+ N FLPGEL+ L +A+R Sbjct: 1184 QLELVNQIQKVYQSQGVQISDKHLEIIVRQMTSRVLTTEENGPNAFLPGELVDLFKAQRM 1243 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 + L+ S+ Y+ ILLGITRASLNT SFISEASFQET +VL KAA +GRIDWL+GLKENV+ Sbjct: 1244 NQILENSLAYKPILLGITRASLNTYSFISEASFQETTKVLTKAALQGRIDWLQGLKENVI 1303 Query: 68 LGGIIP 51 LGGIIP Sbjct: 1304 LGGIIP 1309
>RPOC2_PSINU (Q8WI26) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1408 Score = 223 bits (568), Expect = 3e-58 Identities = 113/194 (58%), Positives = 146/194 (75%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 +S I QGLPKV Q+ EARS++++S N+E + N + + PW F A+++ QS Sbjct: 1155 KSGDIIQGLPKVEQLLEARSVNAVSRNIEDNFKKCNRVIAKFIESPWSFFFSAKISTEQS 1214 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 R LV++I VY+SQGVQI ++HIEII+RQ+TSKV EDG++ VFLPGELI L RA+R Sbjct: 1215 RKDLVDQIQGVYQSQGVQISDKHIEIIVRQMTSKVLTLEDGIATVFLPGELIELPRAQRM 1274 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 RAL + IYY+ ILLGIT+ASLNT SF+SEASFQET RVLA+AA RGRIDWLKGLKENV+ Sbjct: 1275 NRALKQLIYYKPILLGITKASLNTTSFLSEASFQETTRVLARAAIRGRIDWLKGLKENVI 1334 Query: 68 LGGIIPVVPDSKNL 27 +GGI+P S+ + Sbjct: 1335 IGGIVPTGTGSREV 1348
>RPOC2_ADICA (Q85FM9) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1420 Score = 216 bits (551), Expect = 3e-56 Identities = 107/187 (57%), Positives = 144/187 (77%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 +S ITQGLPKV Q+ E+RSI S+S + E W + +++G PW L+GA ++ Sbjct: 1165 KSGDITQGLPKVEQLLESRSIASISAGIGDLFEKWCQNITKLIGNPWSHLLGAGRSMEHC 1224 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 ++ L+++I KVY SQGV+I ++H+EII+RQ+TS+V SEDG++NVFLPGEL+ L +AER Sbjct: 1225 QLILIDQIRKVYESQGVRICDKHLEIIVRQLTSRVVASEDGVTNVFLPGELVELSQAERI 1284 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 R L +SI+Y I+LG+TRASL+T SF++EASFQET RVLAKAA RGRIDWLKGLKENVV Sbjct: 1285 NRVLKKSIFYEPIVLGMTRASLSTTSFLAEASFQETTRVLAKAALRGRIDWLKGLKENVV 1344 Query: 68 LGGIIPV 48 +G +PV Sbjct: 1345 IGDSVPV 1351
>RPOC2_MESVI (Q9MUS7) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1223 Score = 157 bits (398), Expect = 2e-38 Identities = 85/186 (45%), Positives = 119/186 (63%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 ++ I QGLP++ ++ EAR L P L + D + +G A+ + + Sbjct: 990 KTGDIVQGLPRIEELLEARRTKGLKP-LPNNLHDLLQSFFDEATEKYGIQKAAKKSFEKL 1048 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 ++ LVN++ VY++QGV I ++HIE+I+RQ+TSKV + E G LPGELI L R E Sbjct: 1049 QLFLVNEVQSVYKAQGVHISDKHIEVIVRQMTSKVMIEEGG-DTTLLPGELIELHRIENM 1107 Query: 248 GRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 R + Y+ I+LGIT+ASLNT+SFIS ASFQET RVL KAA G+ DWL+GLKENV+ Sbjct: 1108 NRNVSVHAKYKPIVLGITKASLNTESFISAASFQETTRVLTKAAIEGKTDWLRGLKENVI 1167 Query: 68 LGGIIP 51 +G +IP Sbjct: 1168 IGRLIP 1173
>RPOC2_PORPU (P51250) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1224 Score = 145 bits (367), Expect = 7e-35 Identities = 83/193 (43%), Positives = 127/193 (65%), Gaps = 7/193 (3%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIE-DWNERXPRILGVPWGFLI--GAELTI 438 ++ I QGLP++ +I EAR + N ++ +N L + G + A L+ Sbjct: 982 KTGDIIQGLPRIEEILEARKKTDVLLNPHDILDASFN------LYIECGLALYEAARLSF 1035 Query: 437 AQSRISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA 258 + ++ LV ++ VY+SQGV I ++HIE+I+RQ+TSKV++ E+G +LPGEL+ L + Sbjct: 1036 QEIQLLLVKEVQLVYQSQGVNISDKHIEVIVRQMTSKVKI-ENGEETGYLPGELVELQKI 1094 Query: 257 ERAGRALDE----SIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLK 90 E+ +++ + YR ILLGIT+ASLNT+SFIS ASFQET +VL +AA G++DWL+ Sbjct: 1095 EQTNKSMTSRNKLNASYRPILLGITQASLNTESFISAASFQETTKVLTEAAISGKLDWLR 1154 Query: 89 GLKENVVLGGIIP 51 GLKENV++G +IP Sbjct: 1155 GLKENVIIGRLIP 1167
>RPOC2_EUGGR (P23581) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 830 Score = 143 bits (361), Expect = 3e-34 Identities = 84/189 (44%), Positives = 118/189 (62%) Frame = -1 Query: 596 ITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQSRISL 417 I QGLPKV ++ EAR SL + + E L + L+ A + + L Sbjct: 644 IVQGLPKVEKLLEARMTSSLKEIINNPHDILTESFFTFLD-DYENLVAARKSFEVIQKYL 702 Query: 416 VNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL 237 ++ + VY+SQGV+I ++HIE+I++Q+TSKV V+ G S+ F+ G+ + L E + L Sbjct: 703 IDGVQTVYKSQGVKIADKHIELIVKQITSKVIVTNPGDSS-FMVGDFLDLNLVEVLNKRL 761 Query: 236 DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGI 57 SI Y I++G+TR SL++QSFI++ASFQET RVL KAA +GR DWL GLKEN+VLG I Sbjct: 762 VNSIVYEPIIMGLTRFSLSSQSFIAQASFQETTRVLTKAALQGRADWLSGLKENLVLGNI 821 Query: 56 IPVVPDSKN 30 IP KN Sbjct: 822 IPAGTGFKN 830
>RPOC2_GLOVI (Q7NDF7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1262 Score = 142 bits (359), Expect = 6e-34 Identities = 76/127 (59%), Positives = 97/127 (76%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 LVN++ +VYRSQGV+IH++HIEII+RQ+TSKVRV EDG FLPGEL+ L + E+ A Sbjct: 1090 LVNEVQQVYRSQGVEIHDKHIEIIVRQMTSKVRV-EDGGDTTFLPGELVELRQIEQVNEA 1148 Query: 239 LDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 + + A +LLGIT+ASLNT SFIS ASFQET RVL +AA G+ DWL+GLKENV Sbjct: 1149 MAVTGGAPADCTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENV 1208 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1209 IIGRLIP 1215
>RPOC2_GRATL (Q6B8R6) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1228 Score = 139 bits (349), Expect = 8e-33 Identities = 82/193 (42%), Positives = 125/193 (64%), Gaps = 7/193 (3%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEAR--SIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIA 435 ++ I QGLP++ +I EAR S +P++ + + + + L++ Sbjct: 986 KTGDIVQGLPRIEEILEARKKSDSFFNPHVVL-----DSKFRQYVNQGLNLYDATRLSLL 1040 Query: 434 QSRISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAE 255 ++ LV ++ VY+SQGV+I ++HIE+I+RQ+TSKV++ E+G LPGE+I L + E Sbjct: 1041 ILQLYLVKELQLVYQSQGVEIADKHIEVIVRQMTSKVKI-ENGGDTDHLPGEIIELQKIE 1099 Query: 254 RAGRAL-----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLK 90 +AL +E++YY ILLGIT+ASLNT+SFIS ASFQET +VL AA ++DWL+ Sbjct: 1100 MLNKALRLASKEEALYY-PILLGITKASLNTESFISAASFQETTKVLTDAAISCKLDWLR 1158 Query: 89 GLKENVVLGGIIP 51 GLKENV++G +IP Sbjct: 1159 GLKENVIIGRLIP 1171
>RPOC2_SYNEL (Q8DL57) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1324 Score = 137 bits (346), Expect = 2e-32 Identities = 72/145 (49%), Positives = 101/145 (69%), Gaps = 4/145 (2%) Frame = -1 Query: 473 PWGFLIGAELTIAQSRISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNV 294 P G L A+ ++ + + LVN++ VY SQG++I ++HIE+I+RQ+TSKVR+ + G + Sbjct: 1080 PQGLLKAAQTSLEKVQSFLVNEVQSVYLSQGIEIADKHIEVIVRQMTSKVRIDDAG-DTI 1138 Query: 293 FLPGELIGLLRAERAGRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLA 126 L GEL+ L +AE+A + Y +LLGIT+ASLNT SFIS ASFQET RVL Sbjct: 1139 LLSGELMTLRQAEQANEPMALTGGAPAQYTPVLLGITKASLNTDSFISAASFQETTRVLT 1198 Query: 125 KAAXRGRIDWLKGLKENVVLGGIIP 51 +AA G+ DWL+GLKENV++G +IP Sbjct: 1199 EAAIEGKSDWLRGLKENVIIGRLIP 1223
>RPOC2_GUITH (O78483) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1286 Score = 135 bits (341), Expect = 7e-32 Identities = 73/138 (52%), Positives = 98/138 (71%), Gaps = 4/138 (2%) Frame = -1 Query: 452 AELTIAQSRISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 273 A+L++ + + LV+++ KVY+SQ V I ++HIE+I+RQ+TSKV+V EDG LPGEL+ Sbjct: 1082 AKLSLQKVQTYLVDEVQKVYQSQNVDISDKHIEVIVRQMTSKVKV-EDGGDTTLLPGELV 1140 Query: 272 GLLRAERAGRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGR 105 L + E A+ Y ILLGIT+ASLNT SFIS ASFQET RVL +AA G+ Sbjct: 1141 ELQQIENINEAMMLTKGVPATYCPILLGITKASLNTDSFISAASFQETTRVLTEAAIEGK 1200 Query: 104 IDWLKGLKENVVLGGIIP 51 DWL+GLKENV++G +IP Sbjct: 1201 ADWLRGLKENVIIGRLIP 1218
>RPOC2_PROMT (Q46J24) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1369 Score = 135 bits (340), Expect = 9e-32 Identities = 72/138 (52%), Positives = 99/138 (71%), Gaps = 4/138 (2%) Frame = -1 Query: 452 AELTIAQSRISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 273 A+ IA+ + +V+++ VY+SQGV I ++HIE+I+RQ+TSKVR+ ED FLPGELI Sbjct: 1117 AQEAIAKLQHRMVSEVQNVYKSQGVAIDDKHIEVIVRQMTSKVRI-EDAGDTTFLPGELI 1175 Query: 272 GLLRAERAGRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGR 105 L + E +A+ + + +LLGIT+ASLNT SFIS ASFQET RVL +AA G+ Sbjct: 1176 ELRQVEDTNQAISITGGAPSEFTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGK 1235 Query: 104 IDWLKGLKENVVLGGIIP 51 DWL+GLKENV++G +IP Sbjct: 1236 SDWLRGLKENVIIGRLIP 1253
>RPOC2_ANASP (P22705) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1355 Score = 135 bits (339), Expect = 1e-31 Identities = 72/148 (48%), Positives = 99/148 (66%), Gaps = 4/148 (2%) Frame = -1 Query: 482 LGVPWGFLIGAELTIAQSRISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGM 303 LG G A + + + LVN++ VY+SQG+ I ++HIE+I+RQ+T+KVR+ +DG Sbjct: 1105 LGSEDGVYACASHALQKVQTFLVNEVQMVYQSQGIDIADKHIEVIVRQMTNKVRI-DDGG 1163 Query: 302 SNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRASLNTQSFISEASFQETAR 135 LPGEL+ L + E+ A+ Y +LLGIT+ASLNT SFIS ASFQET R Sbjct: 1164 DTTMLPGELVELRQVEQVNEAMAITGGARAQYTPVLLGITKASLNTDSFISAASFQETTR 1223 Query: 134 VLAKAAXRGRIDWLKGLKENVVLGGIIP 51 VL +AA G+ DWL+GLKENV++G +IP Sbjct: 1224 VLTEAAIEGKSDWLRGLKENVIIGRLIP 1251
>RPOC2_SYNPX (Q7U8K2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1364 Score = 135 bits (339), Expect = 1e-31 Identities = 79/163 (48%), Positives = 102/163 (62%), Gaps = 4/163 (2%) Frame = -1 Query: 527 LERRIEDWNERXPRILGVPWGFLIGAELTIAQSRISLVNKIXKVYRSQGVQIHNRHIEII 348 LE ED R P + A+ IA + LV ++ VY+SQGV I ++HIE+I Sbjct: 1098 LECFFEDLRSRKP--------LMDAAQEAIANLQHRLVTEVQNVYKSQGVSIDDKHIEVI 1149 Query: 347 IRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRASLN 180 +RQ+TSKVRV ED LPGELI L + E +A+ + +LLGIT+ASLN Sbjct: 1150 VRQMTSKVRV-EDAGDTTLLPGELIELRQVEDTNQAMAITGGAPAEFTPVLLGITKASLN 1208 Query: 179 TQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T SFIS ASFQET RVL +AA G+ DWL+GLKENV++G +IP Sbjct: 1209 TDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIP 1251
>RPOC2_PROMP (Q7V008) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1366 Score = 135 bits (339), Expect = 1e-31 Identities = 71/138 (51%), Positives = 99/138 (71%), Gaps = 4/138 (2%) Frame = -1 Query: 452 AELTIAQSRISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 273 A+ +I++ + +VN++ VY+SQGV I ++HIE+I+RQ+TSKVR+ ED LPGELI Sbjct: 1115 AQESISKLQRKMVNEVQNVYKSQGVAISDKHIEVIVRQMTSKVRI-EDAGDTTLLPGELI 1173 Query: 272 GLLRAERAGRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGR 105 L + E +A+ + + +LLGIT+ASLNT SFIS ASFQET RVL +AA G+ Sbjct: 1174 ELRQVEDTNQAMSITGGAPAEFTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGK 1233 Query: 104 IDWLKGLKENVVLGGIIP 51 DWL+GLKENV++G +IP Sbjct: 1234 SDWLRGLKENVIIGRLIP 1251
>RPOC2_SYNY3 (P73334) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1317 Score = 135 bits (339), Expect = 1e-31 Identities = 69/127 (54%), Positives = 92/127 (72%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 LVN++ VY+SQGV I ++HIE+I+RQ+T+KVR+ +DG LPGEL+ L + E+ A Sbjct: 1093 LVNEVQTVYQSQGVDISDKHIEVIVRQMTAKVRI-DDGGDTTMLPGELVELRQVEQVNEA 1151 Query: 239 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 + Y +LLGIT+ASLNT SFIS ASFQET RVL +AA G+ DWL+GLKENV Sbjct: 1152 MGITGSAPARYTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENV 1211 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1212 IIGRLIP 1218
>RPOC2_CYACA (Q9TM34) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1269 Score = 134 bits (338), Expect = 2e-31 Identities = 67/130 (51%), Positives = 98/130 (75%), Gaps = 4/130 (3%) Frame = -1 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 R+ L+ +I +VY+SQ ++I+++HIE+IIRQ+TSKV + E G + +F PGEL+ + + E+ Sbjct: 1098 RLELLKEIQQVYQSQKIEINDKHIEVIIRQMTSKVLIQERGDTTLF-PGELVTINQIEKI 1156 Query: 248 GRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLK 81 A+ + Y+ +LLGIT+ASLNT SFIS ASFQET R+L +AA G++DWLKGLK Sbjct: 1157 NSAIIAVNKKEAKYKPVLLGITKASLNTDSFISAASFQETTRILTEAAIEGKVDWLKGLK 1216 Query: 80 ENVVLGGIIP 51 ENV++G +IP Sbjct: 1217 ENVIIGRLIP 1226
>RPOC2_PROMM (Q7V5P3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1374 Score = 133 bits (335), Expect = 4e-31 Identities = 72/138 (52%), Positives = 96/138 (69%), Gaps = 4/138 (2%) Frame = -1 Query: 452 AELTIAQSRISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 273 A+ IA+ + LV ++ VY+SQGV I ++HIE+I+RQ+TSKVR+ ED LPGELI Sbjct: 1123 AQEAIAKLQHRLVTEVQNVYKSQGVSIDDKHIEVIVRQMTSKVRI-EDAGDTTLLPGELI 1181 Query: 272 GLLRAERAGRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGR 105 L + E +A+ + +LLGIT+ASLNT SFIS ASFQET RVL +AA G+ Sbjct: 1182 ELRQVEDTNQAMAITGGAPSEFTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGK 1241 Query: 104 IDWLKGLKENVVLGGIIP 51 DWL+GLKENV++G +IP Sbjct: 1242 SDWLRGLKENVIIGRLIP 1259
>RPOC2_PROMA (Q7VA30) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1367 Score = 133 bits (334), Expect = 5e-31 Identities = 71/138 (51%), Positives = 97/138 (70%), Gaps = 4/138 (2%) Frame = -1 Query: 452 AELTIAQSRISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI 273 A+ IA+ + LV ++ VY+SQGV I ++HIE+I+RQ+TSKVR+ ED LPGELI Sbjct: 1115 AQEAIAKLQHRLVTEVQNVYKSQGVAIDDKHIEVIVRQMTSKVRI-EDAGDTTLLPGELI 1173 Query: 272 GLLRAERAGRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGR 105 + + E +A+ + + +LLGIT+ASLNT SFIS ASFQET RVL +AA G+ Sbjct: 1174 EIRQVEDTNQAISITGGAPAEFTPVLLGITKASLNTDSFISAASFQETTRVLTEAAIEGK 1233 Query: 104 IDWLKGLKENVVLGGIIP 51 DWL+GLKENV++G +IP Sbjct: 1234 SDWLRGLKENVIIGRLIP 1251
>RPOC2_CYAPA (P48120) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1265 Score = 129 bits (324), Expect = 7e-30 Identities = 70/136 (51%), Positives = 95/136 (69%), Gaps = 4/136 (2%) Frame = -1 Query: 446 LTIAQSRISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGL 267 L++ + + LV+++ VY+SQG+ I ++HIEIII+Q+T+KV++ E G LP ELI Sbjct: 1082 LSLQKIQQFLVSEVQSVYQSQGIDISDKHIEIIIKQMTNKVKIEEGG-DTTLLPNELIEF 1140 Query: 266 LRAERAGRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRID 99 + E+ S Y ILLGIT++SLNTQSFIS ASFQET RVLAKAA G+ID Sbjct: 1141 QQIEKMNEKFSTSNGQLASYTPILLGITKSSLNTQSFISAASFQETTRVLAKAAVEGKID 1200 Query: 98 WLKGLKENVVLGGIIP 51 L+GLKENV++G +IP Sbjct: 1201 QLRGLKENVIIGNLIP 1216
>RPOC2_SYNP6 (Q5MZ21) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1318 Score = 128 bits (322), Expect = 1e-29 Identities = 66/127 (51%), Positives = 90/127 (70%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 LVN++ VY+SQG+ I ++HIE+I+RQ+TSKVR+ +DG + LPGEL L + Sbjct: 1106 LVNEVQSVYQSQGIDISDKHIEVIVRQMTSKVRI-DDGGDTIMLPGELHELREVYNSNNT 1164 Query: 239 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 + + + +LLGIT+ASLNT SFIS ASFQET RVL +AA G+ DWL+GLKENV Sbjct: 1165 MALTGMAPAQFTPVLLGITKASLNTNSFISAASFQETTRVLTEAAIEGKSDWLRGLKENV 1224 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1225 IIGRLIP 1231
>RPOC_CYAME (Q85FR6) Bifunctional DNA-directed RNA polymerase beta' and beta''| chain (EC 2.7.7.6) (PEP) [Includes: DNA-directed RNA polymerase beta' chain (Plastid-encoded RNA polymerase beta' subunit) (RNA polymerase beta' subunit); DNA-directed RNA poly Length = 1676 Score = 127 bits (319), Expect = 3e-29 Identities = 71/151 (47%), Positives = 107/151 (70%), Gaps = 1/151 (0%) Frame = -1 Query: 476 VPW-GFLIGAELTIAQSRISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMS 300 VP+ G + A + A+ + L++++ +VY+SQGV I ++HIE+I+RQ+TSKV + + G S Sbjct: 1532 VPYRGMVEAARESFAKLQAKLLHQVQQVYKSQGVDIADKHIEVILRQMTSKVILDDPGDS 1591 Query: 299 NVFLPGELIGLLRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKA 120 + FLPG+L+ L A + + + +LLGIT+A+LNT+SFIS ASFQET R+LA+A Sbjct: 1592 D-FLPGQLVYLNEI-----ASYKHVIFHPVLLGITKAALNTESFISAASFQETTRILAQA 1645 Query: 119 AXRGRIDWLKGLKENVVLGGIIPVVPDSKNL 27 A G+ID L+GLKENV++G +IP +K L Sbjct: 1646 AMEGQIDQLRGLKENVIMGRLIPAGTGAKYL 1676
>RPOC2_NEPOL (Q9TL04) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1463 Score = 125 bits (315), Expect = 7e-29 Identities = 79/203 (38%), Positives = 118/203 (58%), Gaps = 3/203 (1%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEAR---SIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTI 438 ++ I QGLPK+ +I EAR + + NL+ ++ + + L + + T+ Sbjct: 1155 KTGDIVQGLPKIEEILEARRKKGNEIIRSNLQDFVQQFYQDN---LDEGFSRKYASTRTM 1211 Query: 437 AQSRISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA 258 ++ ++ ++ VYRSQGVQI ++H+EII ++TS+V V E LPGE+I RA Sbjct: 1212 RAMQVLILRRVQLVYRSQGVQISDKHLEIISLRMTSRVLV-EKAYGTGILPGEIIEKRRA 1270 Query: 257 ERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKE 78 + + I Y I+LGIT+ASL T+ FIS ASFQET RVL +A +G+ DWL GLKE Sbjct: 1271 DMLNQGRTR-IRYCPIVLGITKASLTTKGFISSASFQETTRVLTQAVLQGKSDWLLGLKE 1329 Query: 77 NVVLGGIIPVVPDSKNLCIVPHK 9 NV+LG +IP + PH+ Sbjct: 1330 NVILGRLIPAGVGIYGHWVGPHE 1352
>RPOC_LACLA (Q9CEN7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 122 bits (307), Expect = 6e-28 Identities = 90/233 (38%), Positives = 124/233 (53%), Gaps = 48/233 (20%) Frame = -1 Query: 605 SSGITQGLPKVXQIFEARS------IDSLSPNLERRIEDWNERXPRI------------- 483 SS ITQGLP+V +IFEAR+ I ++ +E +ED R I Sbjct: 947 SSDITQGLPRVQEIFEARNPKGEAIITEVTGTVESIVEDPATRTREITVKGKTDTRSYTV 1006 Query: 482 -----LGVPWGFLIGAELTIAQSRIS----------------LVNKIXKVYRSQGVQIHN 366 L V G I + Q I L+ ++ K YRSQGV+I + Sbjct: 1007 GMADVLMVEEGEFIHRGAPLIQGSIEPKHLLQVRDALSVETYLLGEVQKTYRSQGVEIGD 1066 Query: 365 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYY--------RAI 210 +HIE+++RQ+ KVRV ++G +++ LPG L+ + E AL+E+ R + Sbjct: 1067 KHIEVMVRQMLRKVRVMDNGSTDI-LPGTLMDISDFE----ALNETALLNGEMPATGRPV 1121 Query: 209 LLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 L+GIT+ASL T SF+S ASFQET RVL AA RG+ D L GLKENV++G IIP Sbjct: 1122 LMGITKASLETNSFLSAASFQETTRVLTDAAIRGKEDHLLGLKENVIIGKIIP 1174
>RPOC_THETN (Q8R7U7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1183 Score = 122 bits (306), Expect = 8e-28 Identities = 85/225 (37%), Positives = 124/225 (55%), Gaps = 43/225 (19%) Frame = -1 Query: 596 ITQGLPKVXQIFEARS---------------IDSLSPNLERRIEDWNERXPRILGVPWGF 462 ITQGLP+V ++FEAR I+ E + D + +P+G Sbjct: 924 ITQGLPRVEELFEARKPKGLAVITEISGVVRINESKKRREITVVDEENNISKTYLIPYGS 983 Query: 461 LI----------GAELT--------------IAQSRISLVNKIXKVYRSQGVQIHNRHIE 354 + G ELT I + L+ ++ KVYR QGV+I+++HIE Sbjct: 984 RLKVRDGQWVQAGDELTEGSVNPHDLLKIKGIYAVQSYLLQEVQKVYRLQGVEINDKHIE 1043 Query: 353 IIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR-ALDESIYY---RAILLGITRAS 186 IIIRQ+ KV+V + G +++ LPGELI + + E + A+++ + R LLGIT+A+ Sbjct: 1044 IIIRQMMKKVKVEDPGDTSM-LPGELIDMFKFEEENKKAIEKGLRPATGRRALLGITKAA 1102 Query: 185 LNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 L T SF+S ASFQET RVL AA +G++D L GLKENV++G +IP Sbjct: 1103 LATDSFLSAASFQETTRVLTDAAIKGKVDPLIGLKENVIIGKLIP 1147
>RPOC2_EMIHU (Q4G3A5) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1267 Score = 121 bits (304), Expect = 1e-27 Identities = 67/140 (47%), Positives = 93/140 (66%), Gaps = 7/140 (5%) Frame = -1 Query: 449 ELTIAQSRISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG 270 +L+ ++ L+ +I + YRSQGV I ++H+E+I++Q+TSKV + + G + FLPGE++ Sbjct: 1087 KLSFKLLQLFLIGEIQRTYRSQGVDIADKHVELIVKQMTSKVCIEDSG-TTTFLPGEVLN 1145 Query: 269 L-------LRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXR 111 L AE G Y +LLGIT+ASLN+ SFIS ASFQET RVL +AA Sbjct: 1146 FQKMADIALVAENKGEIPPS---YVPLLLGITKASLNSDSFISAASFQETTRVLTEAAIE 1202 Query: 110 GRIDWLKGLKENVVLGGIIP 51 GR DWL GLKENV++G +IP Sbjct: 1203 GRKDWLTGLKENVIIGRLIP 1222
>RPOC2_ASTLO (P58132) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 817 Score = 121 bits (304), Expect = 1e-27 Identities = 73/193 (37%), Positives = 113/193 (58%), Gaps = 6/193 (3%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARS--IDSLSPNLERRIED----WNERXPRILGVPWGFLIGAE 447 ++ I QGL ++ ++FEA+ I + NL ++D +N++ Sbjct: 629 KNKDIIQGLVEIEKLFEAKKSFIIDKTKNLHEILKDLFVNYNKKYNNSTSTR------KS 682 Query: 446 LTIAQSRISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGL 267 + I Q I + +I +Y+ QG+ I N+HIEIII+Q+TSKV + G S F+ GE+ + Sbjct: 683 IEIIQKYI--LEEIQSIYKEQGINISNKHIEIIIKQMTSKVIIKNAGNSP-FIVGEICNI 739 Query: 266 LRAERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKG 87 + + + I Y ILLGIT++SL TQSFIS+ +FQE+ + L KAA +IDWL G Sbjct: 740 NSIDNLNKNYEHKIIYEPILLGITKSSLYTQSFISQITFQESIKSLIKAAIENKIDWLYG 799 Query: 86 LKENVVLGGIIPV 48 LKEN++LG +IP+ Sbjct: 800 LKENLILGNLIPI 812
>RPOC_CLOPE (Q93R87) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1178 Score = 120 bits (301), Expect = 3e-27 Identities = 84/224 (37%), Positives = 122/224 (54%), Gaps = 42/224 (18%) Frame = -1 Query: 596 ITQGLPKVXQIFEARSIDSLSPNLER----RIEDWNERXPRI------------------ 483 ITQGLP+V ++FEAR L+ E RIE+ ++ Sbjct: 926 ITQGLPRVEELFEARKPKGLAIVSEVAGTVRIEETKKKRTVYVVTDSGEEYSYDIPFGSR 985 Query: 482 LGVPWGFLIGAELTIAQSRIS----------------LVNKIXKVYRSQGVQIHNRHIEI 351 L V G IGA I + ++ L++++ KVYR QGV I+++H+E+ Sbjct: 986 LKVKDGIAIGAGDEITEGSVNPHDIMSIKGVDGAREYLLSEVQKVYRLQGVDINDKHLEV 1045 Query: 350 IIRQVTSKVRVSEDGMSNVFLPGELIGLL----RAERAGRALDESIYYRAILLGITRASL 183 ++RQ+T K++V+E G +N+ LPG +I + ER E +LLGIT+A+L Sbjct: 1046 VVRQMTRKIKVTEQGDTNL-LPGVMIDMFDFRAENERVESFGGEKAQGDIVLLGITKAAL 1104 Query: 182 NTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T SF+S ASFQET RVL AA +G+ID L GLKENV++G +IP Sbjct: 1105 ATDSFLSAASFQETTRVLTDAAIKGKIDPLVGLKENVIIGKLIP 1148
>RPOC_STRCO (Q8CJT1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1299 Score = 119 bits (298), Expect = 7e-27 Identities = 83/225 (36%), Positives = 123/225 (54%), Gaps = 43/225 (19%) Frame = -1 Query: 596 ITQGLPKVXQIFEARSIDSLSPNLER----RIEDW---------------------NERX 492 ITQGLP+V ++FEAR+ ++P E RIE+ ++R Sbjct: 1019 ITQGLPRVVELFEARTPKGVAPISEASGRVRIEETEKTKKIVVTPDDGSDETAFPISKRA 1078 Query: 491 PRILGVPWGFLIGAELTIAQS--------------RISLVNKIXKVYRSQGVQIHNRHIE 354 ++G +G +LT+ + ++ LV ++ KVY SQGV IH++HIE Sbjct: 1079 RLLVGEGDHVEVGQKLTVGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKHIE 1138 Query: 353 IIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYY----RAILLGITRAS 186 IIIRQ+ +V + E G + + LPGEL+ + E R + + + R L+GIT+AS Sbjct: 1139 IIIRQMLRRVTIIESGDAEL-LPGELVERTKFETENRRVVQEGGHPASGRPQLMGITKAS 1197 Query: 185 LNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 L T+S++S ASFQET RVL AA + D L GLKENV++G +IP Sbjct: 1198 LATESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIP 1242
>RPOC_TROWT (Q820D6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1286 Score = 119 bits (297), Expect = 9e-27 Identities = 88/224 (39%), Positives = 121/224 (54%), Gaps = 42/224 (18%) Frame = -1 Query: 596 ITQGLPKVXQIFEARSIDSLSPNLER----RIEDWNERXPRILG------VPWGFLIGAE 447 ITQGLP+V ++FEAR+ + +P E IED + IL + L A+ Sbjct: 1002 ITQGLPRVQELFEARTPRAAAPIAEADGTVSIEDGDRARRLILKSDNNEEFSYTVLKRAQ 1061 Query: 446 LTIAQ-SRISL---------------------------VNKIXKVYRSQGVQIHNRHIEI 351 L + SR+SL VN + +VYRSQGV IHN+HIE+ Sbjct: 1062 LRVKDGSRVSLGDQLVEGSLDPKEVLRVKGIRAVQEYLVNGVQQVYRSQGVPIHNKHIEV 1121 Query: 350 IIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALD----ESIYYRAILLGITRASL 183 I+RQ+ KV V + G +++ LPGELI R + R ++ R + GIT+ASL Sbjct: 1122 IVRQMLRKVTVVDHGDTSM-LPGELIDQSRYQELNREAQAEGRKTASARQEVTGITKASL 1180 Query: 182 NTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T+S++S ASFQET RVL +A GR D L GLKENV++G +IP Sbjct: 1181 ATESWLSAASFQETTRVLTQAVISGRRDPLIGLKENVIIGNLIP 1224
>RPOC_TROW8 (Q820D9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1286 Score = 119 bits (297), Expect = 9e-27 Identities = 88/224 (39%), Positives = 121/224 (54%), Gaps = 42/224 (18%) Frame = -1 Query: 596 ITQGLPKVXQIFEARSIDSLSPNLER----RIEDWNERXPRILG------VPWGFLIGAE 447 ITQGLP+V ++FEAR+ + +P E IED + IL + L A+ Sbjct: 1002 ITQGLPRVQELFEARTPRAAAPIAEADGTVSIEDGDRARRLILKSDNNEEFSYTVLKRAQ 1061 Query: 446 LTIAQ-SRISL---------------------------VNKIXKVYRSQGVQIHNRHIEI 351 L + SR+SL VN + +VYRSQGV IHN+HIE+ Sbjct: 1062 LRVKDGSRVSLGDQLVEGSLDPKEVLRVKGIRAVQEYLVNGVQQVYRSQGVPIHNKHIEV 1121 Query: 350 IIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALD----ESIYYRAILLGITRASL 183 I+RQ+ KV V + G +++ LPGELI R + R ++ R + GIT+ASL Sbjct: 1122 IVRQMLRKVTVVDHGDTSM-LPGELIDQSRYQELNREAQAEGRKTASARQEVTGITKASL 1180 Query: 182 NTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T+S++S ASFQET RVL +A GR D L GLKENV++G +IP Sbjct: 1181 ATESWLSAASFQETTRVLTQAVISGRRDPLIGLKENVIIGNLIP 1224
>RPOC_BACHK (Q6HPR5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 119 bits (297), Expect = 9e-27 Identities = 83/224 (37%), Positives = 122/224 (54%), Gaps = 42/224 (18%) Frame = -1 Query: 596 ITQGLPKVXQIFEARS-----IDSLSPNLERRIEDWNERXP---------RILGVPWGFL 459 ITQGLP++ +IFEAR+ + S + I D +R R +P+G Sbjct: 949 ITQGLPRIQEIFEARNPKGQAVISEIDGVIAAINDVKDRQEVVVQGEVEARTYAIPYGAR 1008 Query: 458 I----------GAELT--------------IAQSRISLVNKIXKVYRSQGVQIHNRHIEI 351 + G ELT I + L+ ++ KVYR QGV+I ++H+E+ Sbjct: 1009 LKVIPGQKISHGKELTEGSIDPKELLKVTDITAVQEYLLREVQKVYRMQGVEIGDKHVEV 1068 Query: 350 IIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRASL 183 ++RQ+ KVRVS+ G ++V LPG L+ + + A + + R +LLGIT+ASL Sbjct: 1069 MVRQMLRKVRVSDAGETDV-LPGTLLDIHQFTDANAKVLLQGKQPATARPVLLGITKASL 1127 Query: 182 NTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T SF+S ASFQET RVL AA +G+ D L GLKENV++G ++P Sbjct: 1128 ETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVP 1171
>RPOC_BACCZ (Q63H97) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 119 bits (297), Expect = 9e-27 Identities = 83/224 (37%), Positives = 122/224 (54%), Gaps = 42/224 (18%) Frame = -1 Query: 596 ITQGLPKVXQIFEARS-----IDSLSPNLERRIEDWNERXP---------RILGVPWGFL 459 ITQGLP++ +IFEAR+ + S + I D +R R +P+G Sbjct: 949 ITQGLPRIQEIFEARNPKGQAVISEIDGVIAAINDVKDRQEVVVQGEVEARTYAIPYGAR 1008 Query: 458 I----------GAELT--------------IAQSRISLVNKIXKVYRSQGVQIHNRHIEI 351 + G ELT I + L+ ++ KVYR QGV+I ++H+E+ Sbjct: 1009 LKVIPGQKISHGKELTEGSIDPKELLKVTDITAVQEYLLREVQKVYRMQGVEIGDKHVEV 1068 Query: 350 IIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRASL 183 ++RQ+ KVRVS+ G ++V LPG L+ + + A + + R +LLGIT+ASL Sbjct: 1069 MVRQMLRKVRVSDAGETDV-LPGTLLDIHQFTDANAKVLLQGKQPATARPVLLGITKASL 1127 Query: 182 NTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T SF+S ASFQET RVL AA +G+ D L GLKENV++G ++P Sbjct: 1128 ETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVP 1171
>RPOC_BACCR (Q81J47) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 119 bits (297), Expect = 9e-27 Identities = 83/224 (37%), Positives = 122/224 (54%), Gaps = 42/224 (18%) Frame = -1 Query: 596 ITQGLPKVXQIFEARS-----IDSLSPNLERRIEDWNERXP---------RILGVPWGFL 459 ITQGLP++ +IFEAR+ + S + I D +R R +P+G Sbjct: 949 ITQGLPRIQEIFEARNPKGQAVISEIDGVIAAINDVKDRQEVVVQGEVEARTYAIPYGAR 1008 Query: 458 I----------GAELT--------------IAQSRISLVNKIXKVYRSQGVQIHNRHIEI 351 + G ELT I + L+ ++ KVYR QGV+I ++H+E+ Sbjct: 1009 LKVTPGQPISHGKELTEGSIDPKELLKVTDITAVQEYLLREVQKVYRMQGVEIGDKHVEV 1068 Query: 350 IIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRASL 183 ++RQ+ KVRVS+ G ++V LPG L+ + + A + + R +LLGIT+ASL Sbjct: 1069 MVRQMLRKVRVSDAGETDV-LPGTLLDIHQFTDANAKVLLQGKQPATARPVLLGITKASL 1127 Query: 182 NTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T SF+S ASFQET RVL AA +G+ D L GLKENV++G ++P Sbjct: 1128 ETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVP 1171
>RPOC_BACC1 (Q73FA3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 119 bits (297), Expect = 9e-27 Identities = 83/224 (37%), Positives = 122/224 (54%), Gaps = 42/224 (18%) Frame = -1 Query: 596 ITQGLPKVXQIFEARS-----IDSLSPNLERRIEDWNERXP---------RILGVPWGFL 459 ITQGLP++ +IFEAR+ + S + I D +R R +P+G Sbjct: 949 ITQGLPRIQEIFEARNPKGQAVISEIDGVIAAINDVKDRQEVVVQGEVETRTYAIPYGAR 1008 Query: 458 I----------GAELT--------------IAQSRISLVNKIXKVYRSQGVQIHNRHIEI 351 + G ELT I + L+ ++ KVYR QGV+I ++H+E+ Sbjct: 1009 LKVIPGQQISHGKELTEGSIDPKELLKVTDITAVQEYLLREVQKVYRMQGVEIGDKHVEV 1068 Query: 350 IIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRASL 183 ++RQ+ KVRVS+ G ++V LPG L+ + + A + + R +LLGIT+ASL Sbjct: 1069 MVRQMLRKVRVSDAGETDV-LPGTLLDIHQFTDANAKVLLQGKQPATARPVLLGITKASL 1127 Query: 182 NTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T SF+S ASFQET RVL AA +G+ D L GLKENV++G ++P Sbjct: 1128 ETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVP 1171
>RPOC_BACAN (P77819) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 119 bits (297), Expect = 9e-27 Identities = 83/224 (37%), Positives = 122/224 (54%), Gaps = 42/224 (18%) Frame = -1 Query: 596 ITQGLPKVXQIFEARS-----IDSLSPNLERRIEDWNERXP---------RILGVPWGFL 459 ITQGLP++ +IFEAR+ + S + I D +R R +P+G Sbjct: 949 ITQGLPRIQEIFEARNPKGQAVISEIDGVIAAINDVKDRQEVVVQGEVEARTYAIPYGAR 1008 Query: 458 I----------GAELT--------------IAQSRISLVNKIXKVYRSQGVQIHNRHIEI 351 + G ELT I + L+ ++ KVYR QGV+I ++H+E+ Sbjct: 1009 LKVIPGQKISHGKELTEGSIDPKELLKVTDITAVQEYLLREVQKVYRMQGVEIGDKHVEV 1068 Query: 350 IIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRASL 183 ++RQ+ KVRVS+ G ++V LPG L+ + + A + + R +LLGIT+ASL Sbjct: 1069 MVRQMLRKVRVSDAGETDV-LPGTLLDIHQFTDANAKVLLQGKQPATARPVLLGITKASL 1127 Query: 182 NTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T SF+S ASFQET RVL AA +G+ D L GLKENV++G ++P Sbjct: 1128 ETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVP 1171
>RPOC2_ODOSI (P49468) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1481 Score = 119 bits (297), Expect = 9e-27 Identities = 60/127 (47%), Positives = 88/127 (69%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 ++N + VY+SQGV I ++H+E+II+Q+T+KV ++ G +++ LP E+I L E + Sbjct: 1335 ILNSVQSVYKSQGVSIADKHLEVIIKQMTTKVLITHQGNTSL-LPREVIDLYHIEYINKI 1393 Query: 239 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 Y +LLGIT+A+LN SFIS ASFQET RVL KAA GR+DWL+GLKEN+ Sbjct: 1394 ARIHKKHPALYVPLLLGITKAALNNPSFISAASFQETTRVLTKAAIEGRVDWLRGLKENI 1453 Query: 71 VLGGIIP 51 ++G ++P Sbjct: 1454 IIGHLMP 1460
>RPOC_STRAW (Q82DQ4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1299 Score = 118 bits (296), Expect = 1e-26 Identities = 84/226 (37%), Positives = 123/226 (54%), Gaps = 44/226 (19%) Frame = -1 Query: 596 ITQGLPKVXQIFEARSIDSLSPNLER----RIEDWNERXPRILGVPWG------------ 465 ITQGLP+V ++FEAR+ ++P E RIE+ E+ +I+ P Sbjct: 1019 ITQGLPRVVELFEARTPKGVAPISEASGRVRIEE-TEKTKKIVVTPDDGSDETAFPISKR 1077 Query: 464 ----------FLIGAELTIAQS--------------RISLVNKIXKVYRSQGVQIHNRHI 357 +G +LT+ + ++ LV ++ KVY SQGV IH++HI Sbjct: 1078 ARVLVTEGEHVEVGQKLTVGATNPHDVLRILGQRAVQVHLVGEVQKVYNSQGVSIHDKHI 1137 Query: 356 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYY----RAILLGITRA 189 EIIIRQ+ +V + E G + + LPGEL+ + E R + + + R L+GIT+A Sbjct: 1138 EIIIRQMLRRVTIIESGDAEL-LPGELVERSKFETENRRVVQEGGHPASGRPQLMGITKA 1196 Query: 188 SLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 SL T+S++S ASFQET RVL AA + D L GLKENV++G +IP Sbjct: 1197 SLATESWLSAASFQETTRVLTDAAINAKSDSLIGLKENVIIGKLIP 1242
>RPOC_THEFY (Q47LI6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1291 Score = 118 bits (295), Expect = 2e-26 Identities = 86/241 (35%), Positives = 130/241 (53%), Gaps = 47/241 (19%) Frame = -1 Query: 596 ITQGLPKVXQIFEARSIDSLSPNLER----RIEDWNERXPRILGVPWG------------ 465 IT GLP+V ++FEAR ++P E RIE+ ++ +I+ VP Sbjct: 1011 ITHGLPRVQELFEARVPKGVAPISEVEGRVRIEE-TDKSRKIIVVPDDGSDEVSYQVPMR 1069 Query: 464 --FLI--GAELTIAQSRIS--------------------LVNKIXKVYRSQGVQIHNRHI 357 L+ G + + Q + LV+++ +VY+SQGV IH++HI Sbjct: 1070 APLLVQDGQRVEVGQQLVQGTVNPHEILRILGPRAVQQHLVSEVQEVYKSQGVSIHDKHI 1129 Query: 356 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRA 189 EII+RQ+ +V V E G + + LPGE+I + E R + + R +LLGIT+A Sbjct: 1130 EIIVRQMLKRVNVLESGDTKL-LPGEMIERPKFEEINRRVVAEGGQPASARPVLLGITKA 1188 Query: 188 SLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIPV---VPDSKNLCIV 18 SL T+S++S ASFQET RVL + A G+ D L GLKENV++G +IP +P +N+ + Sbjct: 1189 SLATESWLSAASFQETTRVLTENAIHGKSDPLLGLKENVIIGKLIPAGTGMPQYRNIRVE 1248 Query: 17 P 15 P Sbjct: 1249 P 1249
>RPOC_PSEAE (Q9HWC9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 117 bits (292), Expect = 3e-26 Identities = 66/127 (51%), Positives = 90/127 (70%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA----ER 252 +VN+I VYR QGV+I+++HIE I+RQ+ KV VSE G S+ F+ G+ + L + E+ Sbjct: 1233 IVNEIQDVYRLQGVKINDKHIETILRQMLRKVEVSESGDSS-FIKGDQVELTQVLEENEQ 1291 Query: 251 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 G Y +LLGIT+ASL+T+SFIS ASFQET RVL +AA G+ D+L+GLKENV Sbjct: 1292 LGTEDKFPAKYERVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDFLRGLKENV 1351 Query: 71 VLGGIIP 51 V+G +IP Sbjct: 1352 VVGRLIP 1358
>RPOC_CARHZ (Q3A9Q8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1152 Score = 117 bits (292), Expect = 3e-26 Identities = 81/225 (36%), Positives = 122/225 (54%), Gaps = 43/225 (19%) Frame = -1 Query: 596 ITQGLPKVXQIFEAR------------SIDSLSPNLERR-IEDWNERXPRILGVPWGF-- 462 ITQGLP+V ++FEAR + + N RR IE N+ P + Sbjct: 910 ITQGLPRVEELFEARRPKGQAIITEIDGVVEVRDNKGRREIEVINQETGERKVYPITYQA 969 Query: 461 ----------LIGAELT--------------IAQSRISLVNKIXKVYRSQGVQIHNRHIE 354 G ELT I +++ L+ ++ KVYR QGV+I+++HIE Sbjct: 970 RIKVQTGDKVYAGDELTEGPINPHDLIKVKGIEGAQLYLLQEVQKVYRMQGVEINDKHIE 1029 Query: 353 IIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRAS 186 ++IRQ+ KV++ + G +++ LPG L+ + E + + + +LLGIT+AS Sbjct: 1030 VVIRQMLRKVKIEDSGDTDL-LPGSLVDIFEFEDENAKVIAKGGKPATAKRVLLGITKAS 1088 Query: 185 LNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 L T SF+S ASFQET RVL +AA +G++D L GLKENV++G +IP Sbjct: 1089 LATDSFLSAASFQETTRVLTEAAIKGKVDPLLGLKENVIIGKLIP 1133
>RPOC_BACHD (Q9Z9M1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1206 Score = 117 bits (292), Expect = 3e-26 Identities = 77/223 (34%), Positives = 119/223 (53%), Gaps = 41/223 (18%) Frame = -1 Query: 596 ITQGLPKVXQIFEARS-------------IDSLSPNLERRIEDWNERXPRILGVPWGFLI 456 ITQGLP++ ++FEAR+ + +++ +R I E + +P+G I Sbjct: 949 ITQGLPRIQELFEARNPKGQAVITEIEGEVTNINEADKREITVKGEMETKTYSIPYGARI 1008 Query: 455 GAEL--------TIAQSRIS----------------LVNKIXKVYRSQGVQIHNRHIEII 348 EL ++ + I L+ ++ KVYR QGV+I ++H+E++ Sbjct: 1009 KVELGEQVVPGQSLTEGSIDPKELLKVQGMTGVQEYLLREVQKVYRMQGVEIGDKHVEVM 1068 Query: 347 IRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRASLN 180 +RQ+ K+RV + G + V LPG LI + + + R +LLGIT+ASL Sbjct: 1069 VRQMLRKIRVIDAGDTEV-LPGSLIEIQHFNDENKKVLLSGKRPATGRPVLLGITKASLE 1127 Query: 179 TQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T SF+S ASFQET RVL AA +G+ D L GLKENV++G ++P Sbjct: 1128 TDSFLSAASFQETTRVLTDAAIKGKRDELVGLKENVIIGKLVP 1170
>RPOC_METCA (Q60A05) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 116 bits (290), Expect = 6e-26 Identities = 66/127 (51%), Positives = 88/127 (69%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 LV +I VYR QGV+I+++HIE+IIRQ+ KV +++ G S+ FL GE + R Sbjct: 1232 LVKEIQDVYRLQGVKINDKHIEVIIRQMLRKVEITDPGDSS-FLRGEQVDRSRLLEENDR 1290 Query: 239 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L+E Y +LLGIT+ASL+T+SFIS ASFQET RVL +AA RG D L+GLKENV Sbjct: 1291 LEEEGKVPACYEPVLLGITKASLSTESFISAASFQETTRVLTEAAIRGSTDRLQGLKENV 1350 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1351 IVGRLIP 1357
>RPOC_CLOAB (Q97EH0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1182 Score = 116 bits (290), Expect = 6e-26 Identities = 82/226 (36%), Positives = 123/226 (54%), Gaps = 42/226 (18%) Frame = -1 Query: 602 SGITQGLPKVXQIFEARSIDSLSPNLER----RIEDWNERXPRILG----------VPWG 465 S ITQGLP+V ++FEAR L+ E RIE+ ++ + +P+G Sbjct: 923 SDITQGLPRVEELFEARKPKGLAIVSEVSGTVRIEETKKKRIVFIATESGEEVSYDIPFG 982 Query: 464 F--------LIGAELTIAQSRIS----------------LVNKIXKVYRSQGVQIHNRHI 357 IGA I + ++ L++++ KVYR QGV I+++H+ Sbjct: 983 SSLKVKNGETIGAGDEITEGSVNPHDIIRIKGVNAVKNYLLSEVQKVYRLQGVDINDKHL 1042 Query: 356 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGITRA 189 E++IRQ+T KV+V + G + + LPG +I + + ++E+ R LLGIT+A Sbjct: 1043 EVVIRQMTRKVKVEDSGDTEL-LPGTMIDIFDFRDENKKVEENGGRPAQARVSLLGITKA 1101 Query: 188 SLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 +L T SF+S ASFQET RVL AA +G+ D L GLKENV +G +IP Sbjct: 1102 ALATDSFLSAASFQETTRVLTDAAIKGKSDPLVGLKENVTIGKLIP 1147
>RPOC_STRP3 (Q8K8W2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 115 bits (289), Expect = 8e-26 Identities = 87/229 (37%), Positives = 128/229 (55%), Gaps = 44/229 (19%) Frame = -1 Query: 605 SSGITQGLPKVXQIFEARS------IDSLSPNLERRIEDWNERXPRI-------LG---V 474 ++ ITQGLP++ +IFEAR+ I + N+ ED + R ++ +G V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGNVVEIEEDASTRTKKVYVQGKTGMGEYVV 1007 Query: 473 PWGFLI----------GAELT---IAQSRIS-----------LVNKIXKVYRSQGVQIHN 366 P+ + GA LT I R+ L+ ++ KVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVNRGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 365 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 198 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 197 TRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T+ASL T SF+S ASFQET RVL AA RG+ D L GLKENV++G IIP Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIP 1175
>RPOC_STRPM (Q48VR0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 115 bits (289), Expect = 8e-26 Identities = 87/229 (37%), Positives = 128/229 (55%), Gaps = 44/229 (19%) Frame = -1 Query: 605 SSGITQGLPKVXQIFEARS------IDSLSPNLERRIEDWNERXPRI-------LG---V 474 ++ ITQGLP++ +IFEAR+ I + N+ ED + R ++ +G V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGNVVEIEEDASTRTKKVYVQGKTGMGEYVV 1007 Query: 473 PWGFLI----------GAELT---IAQSRIS-----------LVNKIXKVYRSQGVQIHN 366 P+ + GA LT I R+ L+ ++ KVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVNRGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 365 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 198 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 197 TRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T+ASL T SF+S ASFQET RVL AA RG+ D L GLKENV++G IIP Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIP 1175
>RPOC_STRP8 (Q8P2Y2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 115 bits (289), Expect = 8e-26 Identities = 87/229 (37%), Positives = 128/229 (55%), Gaps = 44/229 (19%) Frame = -1 Query: 605 SSGITQGLPKVXQIFEARS------IDSLSPNLERRIEDWNERXPRI-------LG---V 474 ++ ITQGLP++ +IFEAR+ I + N+ ED + R ++ +G V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGNVVEIEEDASTRTKKVYVQGKTGMGEYVV 1007 Query: 473 PWGFLI----------GAELT---IAQSRIS-----------LVNKIXKVYRSQGVQIHN 366 P+ + GA LT I R+ L+ ++ KVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVNRGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 365 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 198 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 197 TRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T+ASL T SF+S ASFQET RVL AA RG+ D L GLKENV++G IIP Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIP 1175
>RPOC_STRP6 (Q5XE96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 115 bits (289), Expect = 8e-26 Identities = 87/229 (37%), Positives = 128/229 (55%), Gaps = 44/229 (19%) Frame = -1 Query: 605 SSGITQGLPKVXQIFEARS------IDSLSPNLERRIEDWNERXPRI-------LG---V 474 ++ ITQGLP++ +IFEAR+ I + N+ ED + R ++ +G V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGNVVEIEEDASTRTKKVYVQGKTGMGEYVV 1007 Query: 473 PWGFLI----------GAELT---IAQSRIS-----------LVNKIXKVYRSQGVQIHN 366 P+ + GA LT I R+ L+ ++ KVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVNRGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 365 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 198 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 197 TRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T+ASL T SF+S ASFQET RVL AA RG+ D L GLKENV++G IIP Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIP 1175
>RPOC_PSEPU (P19176) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1398 Score = 115 bits (289), Expect = 8e-26 Identities = 67/124 (54%), Positives = 92/124 (74%), Gaps = 3/124 (2%) Frame = -1 Query: 413 NKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA--ERAGRA 240 N+I VYR QGV+I+++HIE I+RQ+ KVR+SE G S+ F+ G+ + A ERA + Sbjct: 1235 NEIQDVYRLQGVKINDKHIETILRQMLRKVRISESGDSS-FIKGDQMEYPGAGRERASAS 1293 Query: 239 LDESIY-YRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLG 63 D+ I + +LLGIT+ASL+T+SFIS ASFQET RVL +AA G+ D+L+GLKENVV+G Sbjct: 1294 EDKFISKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVG 1353 Query: 62 GIIP 51 +IP Sbjct: 1354 RLIP 1357
>RPOC_BACSK (Q5WLR9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1206 Score = 115 bits (289), Expect = 8e-26 Identities = 76/223 (34%), Positives = 120/223 (53%), Gaps = 41/223 (18%) Frame = -1 Query: 596 ITQGLPKVXQIFEARS-------------IDSLSPNLERRIEDWNERXPRILGVPWG--- 465 ITQGLP++ ++FEAR+ + + +R + +E + +P+G Sbjct: 949 ITQGLPRIQELFEARNPKGQAVITEIDGDVVDVRDGDKREVTVQSELETKNYSIPYGSRL 1008 Query: 464 -FLIGAELTIAQSRIS--------------------LVNKIXKVYRSQGVQIHNRHIEII 348 +G ++ Q+ L+ ++ KVYR QGV+I ++H+E++ Sbjct: 1009 KVAVGDKVVAGQTLTEGSIDPKELLKVTGMGGVQEYLLREVQKVYRLQGVEIGDKHVEVM 1068 Query: 347 IRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYY----RAILLGITRASLN 180 +RQ+ KVRV + G + + LPG L+ + R A + + S R +LLGIT+ASL Sbjct: 1069 VRQMLRKVRVVDAGDTGI-LPGSLVEIQRFNEANKKVLLSNMRPATGRPVLLGITKASLE 1127 Query: 179 TQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T SF+S ASFQET RVL AA +G+ D L GLKENV++G ++P Sbjct: 1128 TDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVP 1170
>RPOC_STRP1 (P0C0E0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 115 bits (288), Expect = 1e-25 Identities = 81/229 (35%), Positives = 122/229 (53%), Gaps = 44/229 (19%) Frame = -1 Query: 605 SSGITQGLPKVXQIFEARS------IDSLSPNLERRIEDWNERXPRI------------- 483 ++ ITQGLP++ +IFEAR+ I + N+ ED + R ++ Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGNVVEIEEDASTRTKKVYVQGKTGMGEYVI 1007 Query: 482 -----LGVPWGFLIGAELTIAQSRIS----------------LVNKIXKVYRSQGVQIHN 366 + V G + + + I L+ ++ KVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVNRGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 365 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 198 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 197 TRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T+ASL T SF+S ASFQET RVL AA RG+ D L GLKENV++G IIP Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIP 1175
>RPOC_RHILO (Q98N65) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1398 Score = 115 bits (288), Expect = 1e-25 Identities = 63/127 (49%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 LVN+I +VYR QGV I+++HIE+I+RQ+ KV ++ G S ++PG+ + ++ E Sbjct: 1227 LVNEIQEVYRLQGVSINDKHIEVIVRQMLQKVEITTQGDST-YIPGDHVDVIELEEVNER 1285 Query: 239 LDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L E A +LLGIT+ASL T SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1286 LIEDGKKPAEGQPVLLGITKASLQTPSFISAASFQETTRVLTEAAVAGKTDMLQGLKENV 1345 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1346 IVGRLIP 1352
>RPOC_DEIRA (Q9RVW0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1546 Score = 115 bits (288), Expect = 1e-25 Identities = 81/226 (35%), Positives = 122/226 (53%), Gaps = 44/226 (19%) Frame = -1 Query: 596 ITQGLPKVXQIFEARSIDSLSPNLER----RIEDWNERX-------------------PR 486 IT GLP+V ++FEAR + + +R RIE+ ER PR Sbjct: 1269 ITMGLPRVIELFEARKPKTQAVVADRDGVIRIEEEEERYLVRIEADDEQYSSKTATKVPR 1328 Query: 485 ILG--VPWGFLIGAELTIAQSRIS----------------LVNKIXKVYRSQGVQIHNRH 360 +L V G + A I + ++ LV ++ +VYRSQGV++H++H Sbjct: 1329 VLRMTVKDGERVEAGQPITRGAVNPHDLLMYKDTDAAQRYLVEEVQRVYRSQGVKVHDKH 1388 Query: 359 IEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES---IYYRAILLGITRA 189 IE+I+RQ+ V V+ DG L G+ + ++A AL E ++ +LLGIT++ Sbjct: 1389 IEVIVRQMLRWVEVT-DGGDTTLLEGQTVEHWEVDQANEALAEGQTPASWKPVLLGITKS 1447 Query: 188 SLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 SL T+S++S ASFQ T VL +A+ RG++D L GLKENV+LG +IP Sbjct: 1448 SLTTKSWLSAASFQHTTHVLTEASMRGQVDDLIGLKENVILGKLIP 1493
>RPOC_LACSS (Q38UQ3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1214 Score = 115 bits (287), Expect = 1e-25 Identities = 83/228 (36%), Positives = 123/228 (53%), Gaps = 46/228 (20%) Frame = -1 Query: 596 ITQGLPKVXQIFEARSIDSLSPNLE----------------RRIEDWNERXPRILGVPW- 468 ITQGLP++ +IFEAR+ +++ E R I E R VP+ Sbjct: 950 ITQGLPRIQEIFEARNPKAIATITEVTGEVIAVEENPAEHTREITVQGETDTRSYSVPYT 1009 Query: 467 -------GFLI--GAELT--------------IAQSRISLVNKIXKVYRSQGVQIHNRHI 357 G +I G ++T + + L++++ KVYR QG++I ++H+ Sbjct: 1010 SNIIVSEGDMIHRGEKITGGSVDPKQLIKVRDVLSTENYLLHEVQKVYRMQGIEIGDKHV 1069 Query: 356 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIY------YRAILLGIT 195 E+++RQ+ KVRV + G + + LPG L+ + +E R D I R +LLGIT Sbjct: 1070 EVMVRQMLRKVRVMDPGDTEI-LPGTLMDI--SEFTDRNHDTLISGGVPATCRPVLLGIT 1126 Query: 194 RASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 +ASL T SF+S ASFQET RVL A+ RG+ D L GLKENV++G I+P Sbjct: 1127 KASLETNSFLSAASFQETTRVLTDASIRGKSDPLLGLKENVIIGKIVP 1174
>RPOC_ZYMMO (Q5NPK4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1391 Score = 115 bits (287), Expect = 1e-25 Identities = 66/127 (51%), Positives = 88/127 (69%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 LV++I +VYR QGV+I+++HIE I+RQ+ KV ++ G S +FLPGE + E Sbjct: 1217 LVSEIQEVYRLQGVKINDKHIETIVRQMLLKVEITHAGDS-IFLPGEQVEKEDFEAVNAK 1275 Query: 239 LD----ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L+ E ILLGIT+ASL T+SFIS ASFQET RVL +AA +G+ID L GLKENV Sbjct: 1276 LESQGQEPAQATPILLGITKASLQTRSFISAASFQETTRVLTEAAVQGKIDTLSGLKENV 1335 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1336 IVGRLIP 1342
>RPOC_PHOPR (Q6LLW3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 115 bits (287), Expect = 1e-25 Identities = 65/127 (51%), Positives = 89/127 (70%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ +VYR QGV+I+++HIE IIRQ+ KV + + G S FLPGE + R A R Sbjct: 1233 IVNEVQEVYRLQGVKINDKHIETIIRQMLRKVTIVKAGDSE-FLPGEQVEFSRVNIANRK 1291 Query: 239 LD----ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L+ + + + LLGIT+ASL T+SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1292 LEADGKDIVTFSRDLLGITKASLATESFISAASFQETTRVLTEAAVSGKRDPLRGLKENV 1351 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1352 IVGRLIP 1358
>RPOC_LISMO (Q8YA96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1201 Score = 114 bits (286), Expect = 2e-25 Identities = 78/225 (34%), Positives = 118/225 (52%), Gaps = 43/225 (19%) Frame = -1 Query: 596 ITQGLPKVXQIFEARS-------------IDSLSPNLERRIE----------DWNERXPR 486 ITQGLP++ +IFEAR+ + S+ +R+ E +N Sbjct: 949 ITQGLPRIQEIFEARNPKGQAIITEVGGEVVSIEEGRDRQQEITIQGTDDRRSYNIPYTA 1008 Query: 485 ILGVPWGFLIGAELTIAQSRIS----------------LVNKIXKVYRSQGVQIHNRHIE 354 L V G ++ + + + L+ ++ KVYR QGV+I ++H+E Sbjct: 1009 RLRVEEGTIVERGEALTEGSVDPKALIRVRDVLSVQEYLLAEVQKVYRMQGVEIGDKHVE 1068 Query: 353 IIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRAS 186 +++RQ+ K+RV + G +N+ LPG L+ + A R + R +LLGIT+AS Sbjct: 1069 VMVRQMLRKIRVMDTGDTNI-LPGTLMDIHTFTEANREAILSGSQPATGRPVLLGITKAS 1127 Query: 185 LNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 L T SF+S ASFQET RVL AA +G+ D L GLKENV+LG ++P Sbjct: 1128 LETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVILGKLVP 1172
>RPOC_LISMF (Q724E9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1201 Score = 114 bits (285), Expect = 2e-25 Identities = 78/225 (34%), Positives = 118/225 (52%), Gaps = 43/225 (19%) Frame = -1 Query: 596 ITQGLPKVXQIFEARS-------------IDSLSPNLERRIE----------DWNERXPR 486 ITQGLP++ +IFEAR+ + S+ +R+ E +N Sbjct: 949 ITQGLPRIQEIFEARNPKGQAIITEVGGEVVSIEEGRDRQQEITIQGTDDRRSYNIPYTA 1008 Query: 485 ILGVPWGFLIGAELTIAQSRIS----------------LVNKIXKVYRSQGVQIHNRHIE 354 L V G ++ + + + L+ ++ KVYR QGV+I ++H+E Sbjct: 1009 RLRVEEGTIVERGEALTEGSVDPKALIRVRDVLSVQEYLLAEVQKVYRMQGVEIGDKHVE 1068 Query: 353 IIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRAS 186 +++RQ+ K+RV + G +N+ LPG L+ + A R + R +LLGIT+AS Sbjct: 1069 VMVRQMLRKIRVMDTGDTNI-LPGTLMDIHTFTEANRDAILSGSQPATGRPVLLGITKAS 1127 Query: 185 LNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 L T SF+S ASFQET RVL AA +G+ D L GLKENV+LG ++P Sbjct: 1128 LETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVILGKLVP 1172
>RPOC_LISIN (P77879) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1201 Score = 114 bits (285), Expect = 2e-25 Identities = 78/225 (34%), Positives = 118/225 (52%), Gaps = 43/225 (19%) Frame = -1 Query: 596 ITQGLPKVXQIFEARS-------------IDSLSPNLERRIE----------DWNERXPR 486 ITQGLP++ +IFEAR+ + S+ +R+ E +N Sbjct: 949 ITQGLPRIQEIFEARNPKGQAIITEVGGEVVSIEEGRDRQQEITIQGTDDRRSYNIPYTA 1008 Query: 485 ILGVPWGFLIGAELTIAQSRIS----------------LVNKIXKVYRSQGVQIHNRHIE 354 L V G ++ + + + L+ ++ KVYR QGV+I ++H+E Sbjct: 1009 RLRVEEGSIVERGEALTEGSVDPKALIRVRDVLSVQEYLLAEVQKVYRMQGVEIGDKHVE 1068 Query: 353 IIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRAS 186 +++RQ+ K+RV + G +N+ LPG L+ + A R + R +LLGIT+AS Sbjct: 1069 VMVRQMLRKIRVMDTGDTNI-LPGTLMDIHTFTEANRDAILSGSQPATGRPVLLGITKAS 1127 Query: 185 LNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 L T SF+S ASFQET RVL AA +G+ D L GLKENV+LG ++P Sbjct: 1128 LETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVILGKLVP 1172
>RPOC_BIFLO (Q8G515) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1345 Score = 114 bits (285), Expect = 2e-25 Identities = 84/237 (35%), Positives = 125/237 (52%), Gaps = 52/237 (21%) Frame = -1 Query: 605 SSGITQGLPKVXQIFEARSIDSLSPNLE-------------RRI---EDWNERXPRILGV 474 +S ITQGLP+V ++FEAR+ +P E R+I D + P+ GV Sbjct: 1029 ASDITQGLPRVTELFEARTPKGEAPITEFAGSIKIVENDRGRQIILTPDADSGAPKEDGV 1088 Query: 473 --PWGFLIGAE---------------------------LTIAQSR---ISLVNKIXKVYR 390 P + + LTI R +++V ++ VYR Sbjct: 1089 IKPITYQVSKRVPLKVADGDHIKVGTQLVEGSVDPKKILTILGKRAAQVNIVEEVHTVYR 1148 Query: 389 SQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IY 222 SQGV IH++HIE+I+ Q+T +V + + G +++ LPGEL+ R R + ++ Sbjct: 1149 SQGVDIHDKHIEVIVHQMTRRVTIIDSGDTDL-LPGELVDNARFREINRNIVKNGGRPAV 1207 Query: 221 YRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 R L+GIT+ASL T S++S ASFQET RVL +AA ++D LKGLKENV++G +IP Sbjct: 1208 GRPALMGITKASLATDSWLSAASFQETTRVLTEAALSEKVDDLKGLKENVIIGKLIP 1264
>RPOC_OCEIH (Q8ETY7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1203 Score = 114 bits (284), Expect = 3e-25 Identities = 82/235 (34%), Positives = 124/235 (52%), Gaps = 45/235 (19%) Frame = -1 Query: 596 ITQGLPKVXQIFEARSIDSLSPNLE--------RRIED------WNERXPRILGVPWGFL 459 ITQGLP++ ++FEAR+ + E + ++D E R VP+ Sbjct: 949 ITQGLPRIQELFEARNPKGQAVITEIDGTVLEFKEVKDKQEIVVQGEVEQRSYAVPYNAR 1008 Query: 458 I----------GAELT--------------IAQSRISLVNKIXKVYRSQGVQIHNRHIEI 351 + G ELT + + L+ ++ +VYR QGV+I ++H+E+ Sbjct: 1009 MKVSIGDTVEAGQELTEGSVDPKELLQIKGVEGVQDYLLKEVQRVYRMQGVEIGDKHVEV 1068 Query: 350 IIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRASL 183 ++RQ+ K+RV G + V LPG L+ L + + A + E R +LLGIT+ASL Sbjct: 1069 MVRQMLRKIRVVSSGDTEV-LPGSLLELHQFKEANHKVLMEEGEPATGRPVLLGITKASL 1127 Query: 182 NTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIPV---VPDSKNL 27 T SF+S ASFQET RVL AA +G+ D L GLKENV++G ++P +P +NL Sbjct: 1128 ETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVPAGTGMPQYRNL 1182
>RPOC_PSEPF (Q3K5Y2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 113 bits (283), Expect = 4e-25 Identities = 66/127 (51%), Positives = 91/127 (71%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPG---ELIGLLRAERA 249 +VN+I VYR QGV+I+++HIE I+RQ+ KV +SE G S+ F+ G EL +L Sbjct: 1233 IVNEIQDVYRLQGVKINDKHIETILRQMLRKVEISESGDSS-FIKGDQMELTHVLVENER 1291 Query: 248 GRALDESIY-YRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 A D+ + + +LLGIT+ASL+T+SFIS ASFQET RVL +AA G+ D+L+GLKENV Sbjct: 1292 LNAEDKFVSKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENV 1351 Query: 71 VLGGIIP 51 V+G +IP Sbjct: 1352 VVGRLIP 1358
>RPOC_BRUSU (Q8G070) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 113 bits (283), Expect = 4e-25 Identities = 62/127 (48%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 LVN+I +VYR QGV I+++HIE+I+RQ+ KV ++E G + ++PG+ + + E Sbjct: 1228 LVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEITESGDTG-YIPGDHVDRIELEEINER 1286 Query: 239 LDESIYY----RAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L E +LLGIT+ASL T SFIS ASFQET RVL +AA G++D L+GLKENV Sbjct: 1287 LIEEGKKPGSGNPVLLGITKASLQTPSFISAASFQETTRVLTEAAVAGKMDTLQGLKENV 1346 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1347 IVGRLIP 1353
>RPOC_BRUME (Q8YHP7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 113 bits (283), Expect = 4e-25 Identities = 62/127 (48%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 LVN+I +VYR QGV I+++HIE+I+RQ+ KV ++E G + ++PG+ + + E Sbjct: 1228 LVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEITESGDTG-YIPGDHVDRIELEEINER 1286 Query: 239 LDESIYY----RAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L E +LLGIT+ASL T SFIS ASFQET RVL +AA G++D L+GLKENV Sbjct: 1287 LIEEGKKPGSGNPVLLGITKASLQTPSFISAASFQETTRVLTEAAVAGKMDTLQGLKENV 1346 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1347 IVGRLIP 1353
>RPOC_BRUAB (Q57CP9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 113 bits (283), Expect = 4e-25 Identities = 62/127 (48%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 LVN+I +VYR QGV I+++HIE+I+RQ+ KV ++E G + ++PG+ + + E Sbjct: 1228 LVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEITESGDTG-YIPGDHVDRIELEEINER 1286 Query: 239 LDESIYY----RAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L E +LLGIT+ASL T SFIS ASFQET RVL +AA G++D L+GLKENV Sbjct: 1287 LIEEGKKPGSGNPVLLGITKASLQTPSFISAASFQETTRVLTEAAVAGKMDTLQGLKENV 1346 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1347 IVGRLIP 1353
>RPOC_PELUB (Q4FLL3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1389 Score = 113 bits (283), Expect = 4e-25 Identities = 60/126 (47%), Positives = 86/126 (68%), Gaps = 4/126 (3%) Frame = -1 Query: 416 VNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL 237 VN++ +VYR QGV I+++HIE I+RQ+ KV + E G S+ +LPGE+I ++ + L Sbjct: 1226 VNQVQEVYRLQGVIINDKHIETILRQMLKKVEIKESGDSS-YLPGEMIDRIKFDNTNEKL 1284 Query: 236 ----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 +L+GIT+ASL T+SFIS ASFQET RVL AA +G++D L GLKENV+ Sbjct: 1285 VAEGKNPASGERVLMGITKASLQTESFISAASFQETTRVLTDAAIKGKVDPLNGLKENVI 1344 Query: 68 LGGIIP 51 +G ++P Sbjct: 1345 VGRLVP 1350
>RPOC_BARQU (Q6FZM0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1402 Score = 113 bits (282), Expect = 5e-25 Identities = 63/127 (49%), Positives = 86/127 (67%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 LVN+I +VYR QGV I+++HIE+I+RQ+ KV ++E G S ++PG+ + + + Sbjct: 1229 LVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEITESGDSG-YIPGDHVDRIELDEINDN 1287 Query: 239 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L ILLGIT+ASL T SFIS ASFQET RVL +AA G+ID L+GLKENV Sbjct: 1288 LIAEGKRPASGNPILLGITKASLQTPSFISAASFQETTRVLTEAAVSGKIDTLQGLKENV 1347 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1348 IVGRLIP 1354
>RPOC_BARHE (Q6G3X4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1402 Score = 113 bits (282), Expect = 5e-25 Identities = 63/127 (49%), Positives = 86/127 (67%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 LVN+I +VYR QGV I+++HIE+I+RQ+ KV ++E G S ++PG+ + + + Sbjct: 1229 LVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEITESGDSG-YIPGDHVDRIELDEINDN 1287 Query: 239 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L ILLGIT+ASL T SFIS ASFQET RVL +AA G+ID L+GLKENV Sbjct: 1288 LLAEGKRPASGNPILLGITKASLQTPSFISAASFQETTRVLTEAAVSGKIDTLQGLKENV 1347 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1348 IVGRLIP 1354
>RPOC_GLUOX (Q5FTX8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1439 Score = 113 bits (282), Expect = 5e-25 Identities = 64/127 (50%), Positives = 84/127 (66%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 LVN+I VYR QGV+I+++HIE+I+RQ+ KV + E G S +L GE + + E + Sbjct: 1279 LVNEIQDVYRLQGVKINDKHIEVIVRQMLQKVEILEPGDST-YLIGETVDRIEYEGENQR 1337 Query: 239 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L D +L GIT+ASL TQSFIS ASFQET RVL AA G++D L GLKENV Sbjct: 1338 LMENGDTPAKAMPVLQGITKASLQTQSFISAASFQETTRVLTDAATSGKVDTLNGLKENV 1397 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1398 IVGRLIP 1404
>RPOC_PSESM (Q889X7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 113 bits (282), Expect = 5e-25 Identities = 64/127 (50%), Positives = 89/127 (70%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA----ER 252 +VN+I VYR QGV+I+++HIE I+RQ+ KV ++E G S+ F+ G+ + L ER Sbjct: 1233 IVNEIQDVYRLQGVKINDKHIETILRQMLRKVEIAESGDSS-FIKGDQMELTHVLVENER 1291 Query: 251 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 G + +LLGIT+ASL+T+SFIS ASFQET RVL +AA G+ D+L+GLKENV Sbjct: 1292 LGADDKFVSKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENV 1351 Query: 71 VLGGIIP 51 V+G +IP Sbjct: 1352 VVGRLIP 1358
>RPOC_PSEPK (Q88QP1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 113 bits (282), Expect = 5e-25 Identities = 64/127 (50%), Positives = 91/127 (71%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA--ERAG 246 +VN+I VYR QGV+I+++HIE I+RQ+ KV +SE G S+ F+ G+ + L + E Sbjct: 1233 IVNEIQDVYRLQGVKINDKHIETILRQMLRKVEISESGDSS-FIKGDQMELTQVLVENER 1291 Query: 245 RALDESIY--YRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 A ++ + +LLGIT+ASL+T+SFIS ASFQET RVL +AA G+ D+L+GLKENV Sbjct: 1292 LASEDKFISKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENV 1351 Query: 71 VLGGIIP 51 V+G +IP Sbjct: 1352 VVGRLIP 1358
>RPOBC_WOLPM (Q73IW9) Bifunctional DNA-directed RNA polymerase, beta and beta'| chain (EC 2.7.7.6) [Includes: DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit); DNA-directed RNA polymerase beta' chain (Transcri Length = 2837 Score = 113 bits (282), Expect = 5e-25 Identities = 61/127 (48%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 ++++I +VYR QGV+I N+H+E+I++Q+ KV +++ G ++L GE I L +R A Sbjct: 2654 MISEIQQVYRLQGVRIDNKHLEVILKQMLQKVEITDPG-DTMYLVGESIDKLEVDRENDA 2712 Query: 239 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 + S +Y IL GITRASL T SFIS ASFQET +VL +AA G+ D L GLKENV Sbjct: 2713 MSNSGKRPTHYLPILQGITRASLETSSFISAASFQETTKVLTEAAFCGKSDPLSGLKENV 2772 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 2773 IVGRLIP 2779
>RPOC_STRA5 (Q8E238) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1216 Score = 113 bits (282), Expect = 5e-25 Identities = 85/229 (37%), Positives = 125/229 (54%), Gaps = 44/229 (19%) Frame = -1 Query: 605 SSGITQGLPKVXQIFEARS------IDSLSPNLERRIEDWNERXPRILG----------V 474 ++ ITQGLP++ +IFEAR+ I + + ED + R ++ V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGEVVAIEEDSSTRTKKVFVKGQTGEGEYVV 1007 Query: 473 PWGFLI----------GAELT---IAQSRIS-----------LVNKIXKVYRSQGVQIHN 366 P+ + GA LT I R+ L+ ++ KVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVARGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 365 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 198 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 197 TRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T+ASL T SF+S ASFQET RVL AA RG+ D L GLKENV++G IIP Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIP 1175
>RPOC_STRA3 (Q8E7J7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1216 Score = 113 bits (282), Expect = 5e-25 Identities = 85/229 (37%), Positives = 125/229 (54%), Gaps = 44/229 (19%) Frame = -1 Query: 605 SSGITQGLPKVXQIFEARS------IDSLSPNLERRIEDWNERXPRILG----------V 474 ++ ITQGLP++ +IFEAR+ I + + ED + R ++ V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGEVVAIEEDSSTRTKKVFVKGQTGEGEYVV 1007 Query: 473 PWGFLI----------GAELT---IAQSRIS-----------LVNKIXKVYRSQGVQIHN 366 P+ + GA LT I R+ L+ ++ KVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVARGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 365 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 198 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 197 TRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T+ASL T SF+S ASFQET RVL AA RG+ D L GLKENV++G IIP Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIP 1175
>RPOC_STRA1 (Q3K3L1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1216 Score = 113 bits (282), Expect = 5e-25 Identities = 85/229 (37%), Positives = 125/229 (54%), Gaps = 44/229 (19%) Frame = -1 Query: 605 SSGITQGLPKVXQIFEARS------IDSLSPNLERRIEDWNERXPRILG----------V 474 ++ ITQGLP++ +IFEAR+ I + + ED + R ++ V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGEVVAIEEDSSTRTKKVFVKGQTGEGEYVV 1007 Query: 473 PWGFLI----------GAELT---IAQSRIS-----------LVNKIXKVYRSQGVQIHN 366 P+ + GA LT I R+ L+ ++ KVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVARGAALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 365 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 198 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGIPATSRPVLMGI 1126 Query: 197 TRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T+ASL T SF+S ASFQET RVL AA RG+ D L GLKENV++G IIP Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIP 1175
>RPOC_NOCFA (Q5YPE1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1317 Score = 113 bits (282), Expect = 5e-25 Identities = 64/132 (48%), Positives = 87/132 (65%), Gaps = 4/132 (3%) Frame = -1 Query: 434 QSRISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAE 255 Q ++ LV+++ +VYRSQGV IH++HIE+I+RQ+ +V + + G S FLPG L E Sbjct: 1129 QVQVHLVHEVQEVYRSQGVSIHDKHIEVIVRQMLRRVTIIDSG-STEFLPGSLTERAEFE 1187 Query: 254 RAGRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKG 87 A R + E R +L+GIT+ASL T S++S ASFQET RVL AA R D L G Sbjct: 1188 AANRRVVAEGGEPASGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLIG 1247 Query: 86 LKENVVLGGIIP 51 LKENV++G +IP Sbjct: 1248 LKENVIIGKLIP 1259
>RPOC_LEIXX (Q6ACX6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1291 Score = 113 bits (282), Expect = 5e-25 Identities = 82/225 (36%), Positives = 121/225 (53%), Gaps = 43/225 (19%) Frame = -1 Query: 596 ITQGLPKVXQIFEARSIDSLSPNLE---RRIEDWNERXPRILGVPWG------------- 465 ITQGLP+V ++FEAR+ SP E R + + ++ +++ P Sbjct: 1009 ITQGLPRVQELFEARTPKGASPIAEAAGRIVIEETDKSRKVILTPDNGDEPHVYPVLKRS 1068 Query: 464 ---------FLIGAELTIA--------------QSRISLVNKIXKVYRSQGVQIHNRHIE 354 +G +L + + + LV + VYRSQGV IH++HIE Sbjct: 1069 TLLVEDRQQVELGQQLIVGTVDPKEVLRVKGVREVQKHLVGGVQGVYRSQGVPIHDKHIE 1128 Query: 353 IIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR-ALDE---SIYYRAILLGITRAS 186 +I+RQ+ KV V + G +++ LPGEL+ R R AL E + R ++GIT+AS Sbjct: 1129 VIVRQMLRKVTVVDHGDTDL-LPGELVDRSRYNEINRGALQEGKKTASARQEVMGITKAS 1187 Query: 185 LNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 L T+S++S ASFQET RVL +AA G+ D L GLKENV++G +IP Sbjct: 1188 LATESWLSAASFQETTRVLTQAAMEGKSDPLIGLKENVIIGKLIP 1232
>RPOC_CORJK (Q4JT33) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1323 Score = 112 bits (281), Expect = 6e-25 Identities = 64/142 (45%), Positives = 92/142 (64%), Gaps = 7/142 (4%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI----GLLRAER 252 L+N++ KVYR QGV IH++HIEII+RQ+ +V V + G S FLPG L+ + ++ Sbjct: 1142 LINEVQKVYRDQGVAIHDKHIEIIVRQMLRRVTVIDSG-STEFLPGSLVDHADAVAASKE 1200 Query: 251 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 A + + RA ++GIT+ASL T+S++S ASFQET RVL AA R D L GLKENV Sbjct: 1201 AVKTGGRPVEVRAEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKENV 1260 Query: 71 VLGGIIPV---VPDSKNLCIVP 15 ++G +IP + +N+ + P Sbjct: 1261 IIGKLIPAGTGISRYRNISVEP 1282
>RPOC_PHOLL (Q7N9A3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 112 bits (281), Expect = 6e-25 Identities = 62/127 (48%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 + N++ +VYR QGV+I+++HIE+I+RQ+ K + G S FL GE + R + A R Sbjct: 1233 ITNEVQEVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSE-FLEGEQVEYARVKVANRK 1291 Query: 239 LDE----SIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L++ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1292 LEQEGKVAATYGRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1352 IVGRLIP 1358
>RPOC_MYCTU (P0A674) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 112 bits (281), Expect = 6e-25 Identities = 65/145 (44%), Positives = 91/145 (62%), Gaps = 7/145 (4%) Frame = -1 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 +I LV ++ +VYR+QGV IH++HIE+I+RQ+ +V + + G S FLPG LI E Sbjct: 1131 QIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG-STEFLPGSLIDRAEFEAE 1189 Query: 248 GRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLK 81 R + E R +L+GIT+ASL T S++S ASFQET RVL AA R D L GLK Sbjct: 1190 NRRVVAEGGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLK 1249 Query: 80 ENVVLGGIIPV---VPDSKNLCIVP 15 ENV++G +IP + +N+ + P Sbjct: 1250 ENVIIGKLIPAGTGINRYRNIAVQP 1274
>RPOC_MYCBO (P0A675) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 112 bits (281), Expect = 6e-25 Identities = 65/145 (44%), Positives = 91/145 (62%), Gaps = 7/145 (4%) Frame = -1 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 +I LV ++ +VYR+QGV IH++HIE+I+RQ+ +V + + G S FLPG LI E Sbjct: 1131 QIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG-STEFLPGSLIDRAEFEAE 1189 Query: 248 GRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLK 81 R + E R +L+GIT+ASL T S++S ASFQET RVL AA R D L GLK Sbjct: 1190 NRRVVAEGGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLK 1249 Query: 80 ENVVLGGIIPV---VPDSKNLCIVP 15 ENV++G +IP + +N+ + P Sbjct: 1250 ENVIIGKLIPAGTGINRYRNIAVQP 1274
>RPOC_ANAMM (Q5PBG3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1415 Score = 112 bits (281), Expect = 6e-25 Identities = 62/127 (48%), Positives = 88/127 (69%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 ++++I +VYR QGV+I N+HIE+I+RQ+ KV +++ G ++L GE G R R Sbjct: 1224 MISEIQQVYRLQGVRIDNKHIEVILRQMLQKVEITDPG-DTMYLVGEHAGREEVMRLNRK 1282 Query: 239 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L+E+ + Y IL GIT+ASL+T SFIS ASFQET +VL +AA G+ D L GLKENV Sbjct: 1283 LEEAGKKPVAYVPILQGITKASLDTNSFISAASFQETTKVLTEAAFSGKEDPLYGLKENV 1342 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1343 IVGRLIP 1349
>RPOC_STAHJ (Q4L3K4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1206 Score = 112 bits (281), Expect = 6e-25 Identities = 81/229 (35%), Positives = 118/229 (51%), Gaps = 45/229 (19%) Frame = -1 Query: 602 SGITQGLPKVXQIFEARSI--DSLSPNLERRIEDWNERXPRILGV--------------- 474 S ITQGLP++ +IFEAR+ ++ +E +ED R + Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGANETRSYLASG 1010 Query: 473 ------------------------PWGFLIGAELTIAQSRISLVNKIXKVYRSQGVQIHN 366 P FL A L +S L+ ++ KVYR QGV+I + Sbjct: 1011 TSRLKVEVGQSVERGEVLTEGSIEPKNFLAVAGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 365 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 198 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R + + +LLGI Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHSFTDANREAFKERKRPATAKPVLLGI 1127 Query: 197 TRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T+ASL T+SF+S ASFQET RVL AA +G+ D L GLKENV++G +IP Sbjct: 1128 TKASLETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIP 1176
>RPOC_ENTFA (Q82Z41) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1217 Score = 112 bits (280), Expect = 8e-25 Identities = 84/228 (36%), Positives = 119/228 (52%), Gaps = 46/228 (20%) Frame = -1 Query: 596 ITQGLPKVXQIFEARS----------------IDSLSPNLERRIEDWNERXPRILGVPW- 468 ITQGLP++ +IFEAR+ I ++ + + R VP+ Sbjct: 949 ITQGLPRIQEIFEARNPKGQAVITEVTGEVIDISEDPATRQKEVTIKGKTDTRTYTVPYT 1008 Query: 467 -------GFLI--GAELT--------------IAQSRISLVNKIXKVYRSQGVQIHNRHI 357 G +I GA LT + L+ ++ +VYR QGV+I ++HI Sbjct: 1009 ARMKVAEGDIIHRGAPLTEGSIDPKQLLQVRDVLSVENYLLREVQRVYRMQGVEIGDKHI 1068 Query: 356 EIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIY------YRAILLGIT 195 E+++RQ+ K+RV + G + + LPG L+ + AE R D + R +LLGIT Sbjct: 1069 EVMVRQMLRKIRVMDPGDTEI-LPGTLMDI--AEFKDRNYDTLVAGGVPATSRPVLLGIT 1125 Query: 194 RASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 +ASL T SF+S ASFQET RVL AA RG+ D L GLKENV++G IIP Sbjct: 1126 KASLETNSFLSAASFQETTRVLTDAAIRGKKDPLLGLKENVIIGKIIP 1173
>RPOC_MYCPA (Q73SE3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 112 bits (280), Expect = 8e-25 Identities = 63/130 (48%), Positives = 85/130 (65%), Gaps = 4/130 (3%) Frame = -1 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 +I LV ++ +VYR+QGV IH++HIE+I+RQ+ +V + + G S FLPG LI E Sbjct: 1131 QIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG-STEFLPGSLIDRAEFEAE 1189 Query: 248 GRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLK 81 R + E R +L+GIT+ASL T S++S ASFQET RVL AA R D L GLK Sbjct: 1190 NRRVVAEGGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLK 1249 Query: 80 ENVVLGGIIP 51 ENV++G +IP Sbjct: 1250 ENVIIGKLIP 1259
>RPOC_MYCLE (P30761) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 112 bits (280), Expect = 8e-25 Identities = 63/130 (48%), Positives = 85/130 (65%), Gaps = 4/130 (3%) Frame = -1 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 +I LV ++ +VYR+QGV IH++HIE+I+RQ+ +V + + G S FLPG LI E Sbjct: 1131 QIHLVREVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSG-STEFLPGSLIDRAEFESE 1189 Query: 248 GRAL----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLK 81 R + E R +L+GIT+ASL T S++S ASFQET RVL AA R D L GLK Sbjct: 1190 NRRVVAESGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDKLNGLK 1249 Query: 80 ENVVLGGIIP 51 ENV++G +IP Sbjct: 1250 ENVIIGKLIP 1259
>RPOC_SHISS (Q3YUZ6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 112 bits (279), Expect = 1e-24 Identities = 63/127 (49%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANRE 1291 Query: 239 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L+ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1292 LEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1352 IVGRLIP 1358
>RPOC_SHIFL (P0A8T9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 112 bits (279), Expect = 1e-24 Identities = 63/127 (49%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANRE 1291 Query: 239 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L+ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1292 LEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1352 IVGRLIP 1358
>RPOC_SHIDS (Q32AG0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 112 bits (279), Expect = 1e-24 Identities = 63/127 (49%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANRE 1291 Query: 239 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L+ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1292 LEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1352 IVGRLIP 1358
>RPOC_SHIBS (Q31U09) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 112 bits (279), Expect = 1e-24 Identities = 63/127 (49%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANRE 1291 Query: 239 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L+ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1292 LEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1352 IVGRLIP 1358
>RPOC_ECOLI (P0A8T7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 112 bits (279), Expect = 1e-24 Identities = 63/127 (49%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANRE 1291 Query: 239 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L+ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1292 LEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1352 IVGRLIP 1358
>RPOC_ECOL6 (Q8FB83) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 112 bits (279), Expect = 1e-24 Identities = 63/127 (49%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANRE 1291 Query: 239 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L+ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1292 LEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1352 IVGRLIP 1358
>RPOC_ECO57 (P0A8T8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 112 bits (279), Expect = 1e-24 Identities = 63/127 (49%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIVNAGSSD-FLEGEQVEYSRVKIANRE 1291 Query: 239 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L+ + Y LLGIT+ASL T+SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1292 LEANGKVGATYSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1352 IVGRLIP 1358
>RPOC_GEOKA (Q5L404) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1199 Score = 112 bits (279), Expect = 1e-24 Identities = 83/225 (36%), Positives = 122/225 (54%), Gaps = 43/225 (19%) Frame = -1 Query: 596 ITQGLPKVXQIFEARS-------------IDSLSPNLERRIED--WNERXPRILGVPWGF 462 ITQGLP+V ++FEAR+ + S++ + + E E R P+ Sbjct: 949 ITQGLPRVQELFEARNPKGQAVISEIDGTVISINKTRDNQYEVVVQGEVETRTYVAPYNA 1008 Query: 461 LI----------GAELT--------------IAQSRISLVNKIXKVYRSQGVQIHNRHIE 354 + G ELT I + L+ ++ KVYR QGV+I ++HIE Sbjct: 1009 RLKVEEGQRVERGQELTEGSVDPKQLLRVRDITSVQEYLLREVQKVYRMQGVEISDKHIE 1068 Query: 353 IIIRQVTSKVRVSEDGMSNVFLPGELIGLLR-AERAGRALDES---IYYRAILLGITRAS 186 +++RQ+ KVRV + G ++V LPG L+ + + + +AL E R +LLGIT+AS Sbjct: 1069 VMVRQMLRKVRVIDAGDTDV-LPGTLLDVHQFTDVNAKALREGKRPATARQVLLGITKAS 1127 Query: 185 LNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 L T SF+S ASFQET RVL AA +G+ D L GLKENV++G ++P Sbjct: 1128 LETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVP 1172
>RPOC_STAES (Q8CQ83) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 112 bits (279), Expect = 1e-24 Identities = 80/229 (34%), Positives = 119/229 (51%), Gaps = 45/229 (19%) Frame = -1 Query: 602 SGITQGLPKVXQIFEARS-------------IDSLSPNLERR----IEDWNERXPRILG- 477 S ITQGLP++ +IFEAR+ +D + +R+ ++ NE + Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVDDIKLAKDRQQEIIVKGANETRSYLASG 1010 Query: 476 -----------------------VPWGFLIGAELTIAQSRISLVNKIXKVYRSQGVQIHN 366 P +L A L +S L+ ++ KVYR QGV+I + Sbjct: 1011 TSRLKVEIGQSVERGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 365 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGI 198 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R + +LLGI Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANRDAFKHRKRPATAKPVLLGI 1127 Query: 197 TRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T+ASL T+SF+S ASFQET RVL AA +G+ D L GLKENV++G +IP Sbjct: 1128 TKASLETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIP 1176
>RPOC_STAEQ (Q5HRK9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 112 bits (279), Expect = 1e-24 Identities = 80/229 (34%), Positives = 119/229 (51%), Gaps = 45/229 (19%) Frame = -1 Query: 602 SGITQGLPKVXQIFEARS-------------IDSLSPNLERR----IEDWNERXPRILG- 477 S ITQGLP++ +IFEAR+ +D + +R+ ++ NE + Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVDDIKLAKDRQQEIIVKGANETRSYLASG 1010 Query: 476 -----------------------VPWGFLIGAELTIAQSRISLVNKIXKVYRSQGVQIHN 366 P +L A L +S L+ ++ KVYR QGV+I + Sbjct: 1011 TSRLKVEIGQSVERGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 365 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGI 198 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R + +LLGI Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANRDAFKHRKRPATAKPVLLGI 1127 Query: 197 TRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T+ASL T+SF+S ASFQET RVL AA +G+ D L GLKENV++G +IP Sbjct: 1128 TKASLETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIP 1176
>RPOC_STAAW (P60286) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 112 bits (279), Expect = 1e-24 Identities = 82/232 (35%), Positives = 120/232 (51%), Gaps = 48/232 (20%) Frame = -1 Query: 602 SGITQGLPKVXQIFEARSI--DSLSPNLERRIEDWNERXPRILGV--------------- 474 S ITQGLP++ +IFEAR+ ++ +E +ED R + Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGANETRSYLASG 1010 Query: 473 ------------------------PWGFLIGAELTIAQSRISLVNKIXKVYRSQGVQIHN 366 P +L A L +S L+ ++ KVYR QGV+I + Sbjct: 1011 TSRIIVEIGQPVQRGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 365 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRA-------IL 207 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R E+ +R +L Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANR---EAFKHRKRPATAKPVL 1124 Query: 206 LGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 LGIT+ASL T+SF+S ASFQET RVL AA +G+ D L GLKENV++G +IP Sbjct: 1125 LGITKASLETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIP 1176
>RPOC_STAAS (Q6GBU4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 112 bits (279), Expect = 1e-24 Identities = 82/232 (35%), Positives = 120/232 (51%), Gaps = 48/232 (20%) Frame = -1 Query: 602 SGITQGLPKVXQIFEARSI--DSLSPNLERRIEDWNERXPRILGV--------------- 474 S ITQGLP++ +IFEAR+ ++ +E +ED R + Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGANETRSYLASG 1010 Query: 473 ------------------------PWGFLIGAELTIAQSRISLVNKIXKVYRSQGVQIHN 366 P +L A L +S L+ ++ KVYR QGV+I + Sbjct: 1011 TSRIIVEIGQPVQRGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 365 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRA-------IL 207 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R E+ +R +L Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANR---EAFKHRKRPATAKPVL 1124 Query: 206 LGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 LGIT+ASL T+SF+S ASFQET RVL AA +G+ D L GLKENV++G +IP Sbjct: 1125 LGITKASLETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIP 1176
>RPOC_STAAR (Q6GJC5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 112 bits (279), Expect = 1e-24 Identities = 82/232 (35%), Positives = 120/232 (51%), Gaps = 48/232 (20%) Frame = -1 Query: 602 SGITQGLPKVXQIFEARSI--DSLSPNLERRIEDWNERXPRILGV--------------- 474 S ITQGLP++ +IFEAR+ ++ +E +ED R + Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGANETRSYLASG 1010 Query: 473 ------------------------PWGFLIGAELTIAQSRISLVNKIXKVYRSQGVQIHN 366 P +L A L +S L+ ++ KVYR QGV+I + Sbjct: 1011 TSRIIVEIGQPVQRGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 365 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRA-------IL 207 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R E+ +R +L Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANR---EAFKHRKRPATAKPVL 1124 Query: 206 LGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 LGIT+ASL T+SF+S ASFQET RVL AA +G+ D L GLKENV++G +IP Sbjct: 1125 LGITKASLETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIP 1176
>RPOC_STAAN (P60285) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 112 bits (279), Expect = 1e-24 Identities = 82/232 (35%), Positives = 120/232 (51%), Gaps = 48/232 (20%) Frame = -1 Query: 602 SGITQGLPKVXQIFEARSI--DSLSPNLERRIEDWNERXPRILGV--------------- 474 S ITQGLP++ +IFEAR+ ++ +E +ED R + Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGANETRSYLASG 1010 Query: 473 ------------------------PWGFLIGAELTIAQSRISLVNKIXKVYRSQGVQIHN 366 P +L A L +S L+ ++ KVYR QGV+I + Sbjct: 1011 TSRIIVEIGQPVQRGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 365 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRA-------IL 207 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R E+ +R +L Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANR---EAFKHRKRPATAKPVL 1124 Query: 206 LGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 LGIT+ASL T+SF+S ASFQET RVL AA +G+ D L GLKENV++G +IP Sbjct: 1125 LGITKASLETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIP 1176
>RPOC_STAAM (P60284) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 112 bits (279), Expect = 1e-24 Identities = 82/232 (35%), Positives = 120/232 (51%), Gaps = 48/232 (20%) Frame = -1 Query: 602 SGITQGLPKVXQIFEARSI--DSLSPNLERRIEDWNERXPRILGV--------------- 474 S ITQGLP++ +IFEAR+ ++ +E +ED R + Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGANETRSYLASG 1010 Query: 473 ------------------------PWGFLIGAELTIAQSRISLVNKIXKVYRSQGVQIHN 366 P +L A L +S L+ ++ KVYR QGV+I + Sbjct: 1011 TSRIIVEIGQPVQRGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 365 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRA-------IL 207 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R E+ +R +L Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANR---EAFKHRKRPATAKPVL 1124 Query: 206 LGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 LGIT+ASL T+SF+S ASFQET RVL AA +G+ D L GLKENV++G +IP Sbjct: 1125 LGITKASLETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIP 1176
>RPOC_STAAC (Q5HID2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 112 bits (279), Expect = 1e-24 Identities = 82/232 (35%), Positives = 120/232 (51%), Gaps = 48/232 (20%) Frame = -1 Query: 602 SGITQGLPKVXQIFEARSI--DSLSPNLERRIEDWNERXPRILGV--------------- 474 S ITQGLP++ +IFEAR+ ++ +E +ED R + Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVEDIKLAKDRQQEIVVKGANETRSYLASG 1010 Query: 473 ------------------------PWGFLIGAELTIAQSRISLVNKIXKVYRSQGVQIHN 366 P +L A L +S L+ ++ KVYR QGV+I + Sbjct: 1011 TSRIIVEIGQPVQRGEVLTEGSIEPKNYLSVAGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 365 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDESIYYRA-------IL 207 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R E+ +R +L Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANR---EAFKHRKRPATAKPVL 1124 Query: 206 LGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 LGIT+ASL T+SF+S ASFQET RVL AA +G+ D L GLKENV++G +IP Sbjct: 1125 LGITKASLETESFLSAASFQETTRVLTDAAIKGKRDDLLGLKENVIIGKLIP 1176
>RPOC_DEHSC (Q3ZX00) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1295 Score = 112 bits (279), Expect = 1e-24 Identities = 61/127 (48%), Positives = 86/127 (67%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 LV ++ KVY SQGV I+++HIE+I RQ+ KVR+ G +++ +PGEL+ R E Sbjct: 1136 LVEEVQKVYYSQGVHINDKHIEVIARQMLIKVRIDSSGDTDL-VPGELVDKFRYEDINAK 1194 Query: 239 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 + E +L+GITRASL+T+S+++ ASFQET RVL AA GR+D L GLKENV Sbjct: 1195 VLAEGGEPATAHTVLMGITRASLSTESWLAAASFQETTRVLTDAAIYGRVDKLSGLKENV 1254 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1255 IIGKLIP 1261
>RPOC_PSEF5 (Q4K527) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 111 bits (278), Expect = 1e-24 Identities = 63/127 (49%), Positives = 88/127 (69%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA----ER 252 +VN+I VYR QGV+I+++HIE I+RQ+ KV ++E G S+ F+ G+ + L ER Sbjct: 1233 IVNEIQDVYRLQGVKINDKHIETILRQMLRKVEIAESGDSS-FIKGDQMELTHVLVENER 1291 Query: 251 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 + +LLGIT+ASL+T+SFIS ASFQET RVL +AA G+ D+L+GLKENV Sbjct: 1292 LSTEDKFVAKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENV 1351 Query: 71 VLGGIIP 51 V+G +IP Sbjct: 1352 VVGRLIP 1358
>RPOC_STAS1 (Q49V53) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1207 Score = 111 bits (278), Expect = 1e-24 Identities = 80/229 (34%), Positives = 120/229 (52%), Gaps = 45/229 (19%) Frame = -1 Query: 602 SGITQGLPKVXQIFEARS-------------IDSLSPNLERR----IEDWNERXPRILG- 477 S ITQGLP++ +IFEAR+ +D + +R+ I+ NE + Sbjct: 951 SDITQGLPRIQEIFEARNPKGQAVITEIEGVVDDIKLAKDRQQEIVIKGANETKSYLASG 1010 Query: 476 -----------------------VPWGFLIGAELTIAQSRISLVNKIXKVYRSQGVQIHN 366 P +L + L +S L+ ++ KVYR QGV+I + Sbjct: 1011 TSRLKVEVGQSVERGEVLTEGSIEPKNYLSVSGLNATESY--LLKEVQKVYRMQGVEIDD 1068 Query: 365 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 198 +H+E+++RQ+ KVR+ E G + + LPG L+ + A R + + +LLGI Sbjct: 1069 KHVEVMVRQMLRKVRIIEAGDTKL-LPGSLVDIHNFTDANREAFKERKRPATAKPVLLGI 1127 Query: 197 TRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T+ASL T+SF+S ASFQET RVL AA +G+ D L GLKENV++G +IP Sbjct: 1128 TKASLETESFLSAASFQETTRVLTDAAIKGKRDNLLGLKENVIIGKLIP 1176
>RPOC_COLP3 (Q47UW0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 111 bits (278), Expect = 1e-24 Identities = 60/127 (47%), Positives = 88/127 (69%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ +VYR QGV+I+++HIE+I+RQ+ K + + G S FL GE + + R + R Sbjct: 1232 IVNEVQEVYRLQGVKINDKHIEVIVRQMIRKCEILDAGDST-FLKGEQVEVARVNISNRE 1290 Query: 239 LD----ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L+ + Y ++GIT+ASL T+SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1291 LEAEGKQPAEYEMQMMGITKASLATESFISAASFQETTRVLTEAAVAGKKDGLRGLKENV 1350 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1351 IVGRLIP 1357
>RPOC_LACJO (Q74L94) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1224 Score = 111 bits (278), Expect = 1e-24 Identities = 81/229 (35%), Positives = 121/229 (52%), Gaps = 44/229 (19%) Frame = -1 Query: 605 SSGITQGLPKVXQIFEAR----------------SIDSLSPNLERRIEDWNERXPRILGV 474 ++ ITQGLP+V ++FEAR SI+ R+I + R V Sbjct: 948 AADITQGLPRVQELFEARNPKGRATISEVTGEVTSIEEDPAEHTRQITVKGQTDTRTYDV 1007 Query: 473 PWGFLI----------GAELTIAQ--------------SRISLVNKIXKVYRSQGVQIHN 366 P+ + G +LT+ + ++++I K YR QGV+I + Sbjct: 1008 PYTASVAVAEGDHVVRGDKLTLGSIDPKELIRVRDALTTEKYILSEIQKAYRMQGVEIAD 1067 Query: 365 RHIEIIIRQVTSKVRVSEDGMSNVFLPGEL--IGLLRAERAGRALDESIYYRA--ILLGI 198 +H+E++ RQ+ KVR+ + G +++ LPGEL IG +A + I A ++LGI Sbjct: 1068 KHVEVMARQMLQKVRILDPGETDI-LPGELMDIGEFKARNREVIISGGIPATAQSVILGI 1126 Query: 197 TRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T+A+L T SF+S ASFQET RVL A+ RG+ D L GLKENV++G IIP Sbjct: 1127 TKAALETNSFLSAASFQETTRVLTDASIRGKNDPLLGLKENVIIGKIIP 1175
>RPOC_STRT2 (Q5M2F6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1212 Score = 111 bits (278), Expect = 1e-24 Identities = 83/229 (36%), Positives = 123/229 (53%), Gaps = 44/229 (19%) Frame = -1 Query: 605 SSGITQGLPKVXQIFEARS------IDSLSPNLERRIEDWNERXPRILG----------V 474 ++ ITQGLP++ +IFEAR+ I + + ED R ++ V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGTVIEIEEDAATRTKKVFVQGKTGMGEYVV 1007 Query: 473 PWGFLIGAEL-------------TIAQSRIS-----------LVNKIXKVYRSQGVQIHN 366 P+ + E+ +I R+ L+ ++ KVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVHRGEALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 365 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 198 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +LLGI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGVPATSRPVLLGI 1126 Query: 197 TRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T+ASL T SF+S ASFQET RVL AA RG+ D L GLKENV++G IIP Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLIGLKENVIIGKIIP 1175
>RPOC_STRT1 (Q5LXV4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1212 Score = 111 bits (278), Expect = 1e-24 Identities = 83/229 (36%), Positives = 123/229 (53%), Gaps = 44/229 (19%) Frame = -1 Query: 605 SSGITQGLPKVXQIFEARS------IDSLSPNLERRIEDWNERXPRILG----------V 474 ++ ITQGLP++ +IFEAR+ I + + ED R ++ V Sbjct: 948 NTDITQGLPRIQEIFEARNPKGEAVITEVKGTVIEIEEDAATRTKKVFVQGKTGMGEYVV 1007 Query: 473 PWGFLIGAEL-------------TIAQSRIS-----------LVNKIXKVYRSQGVQIHN 366 P+ + E+ +I R+ L+ ++ KVYRSQGV+I + Sbjct: 1008 PFTARMKVEVGDEVHRGEALTEGSIQPKRLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 365 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 198 +H+E+++RQ+ KVRV + G +++ LPG L+ + A + + S R +LLGI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTDL-LPGTLMDISDFTDANKDIVISGGVPATSRPVLLGI 1126 Query: 197 TRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T+ASL T SF+S ASFQET RVL AA RG+ D L GLKENV++G IIP Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLIGLKENVIIGKIIP 1175
>RPOC_FUSNN (Q8RHI7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1319 Score = 111 bits (277), Expect = 2e-24 Identities = 79/228 (34%), Positives = 120/228 (52%), Gaps = 46/228 (20%) Frame = -1 Query: 596 ITQGLPKVXQIFEARSIDSLSP--NLERRIEDWNERXPRI-------------------- 483 IT GLP+V ++FEAR+ + ++ RIE + ++ Sbjct: 1069 ITGGLPRVQELFEARNPKGKATLAEIDGRIEILTTKKKQMRVVNVRSLENPEEFKEYLIP 1128 Query: 482 ----LGVPWGFLIGAELTIAQSRIS----------------LVNKIXKVYRSQGVQIHNR 363 L V G I A I + IS ++ + +VYR QGV ++++ Sbjct: 1129 MGERLVVTDGLKIKAGDKITEGAISPYDVLNIKGLVAAEQFILESVQQVYRDQGVTVNDK 1188 Query: 362 HIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGIT 195 HIEII++Q+ KVR+ + G S +FL E+I + + L+E I Y ++ GIT Sbjct: 1189 HIEIIVKQMFRKVRIIDSGAS-LFLEDEVIEKRVVDLENKKLEEQGKALIKYEPVIQGIT 1247 Query: 194 RASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 +A++NT SFIS ASFQET +VL+ AA G++D+L+GLKENV+LG IP Sbjct: 1248 KAAVNTGSFISAASFQETTKVLSNAAIEGKVDYLEGLKENVILGKKIP 1295
>RPOC_PSEU2 (Q4ZMN8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 111 bits (277), Expect = 2e-24 Identities = 63/127 (49%), Positives = 88/127 (69%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA----ER 252 +VN+I VYR QGV+I+++HIE I+RQ+ KV ++E G S+ F+ G+ + L ER Sbjct: 1233 IVNEIQDVYRLQGVKINDKHIETILRQMLRKVEIAESGDSS-FIKGDQMELTHVLVENER 1291 Query: 251 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 + +LLGIT+ASL+T+SFIS ASFQET RVL +AA G+ D+L+GLKENV Sbjct: 1292 LSTEDKFVSKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENV 1351 Query: 71 VLGGIIP 51 V+G +IP Sbjct: 1352 VVGRLIP 1358
>RPOC_PSE14 (Q48D30) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 111 bits (277), Expect = 2e-24 Identities = 63/127 (49%), Positives = 88/127 (69%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA----ER 252 +VN+I VYR QGV+I+++HIE I+RQ+ KV ++E G S+ F+ G+ + L ER Sbjct: 1233 IVNEIQDVYRLQGVKINDKHIETILRQMLRKVEIAESGDSS-FIKGDQMELTHVLVENER 1291 Query: 251 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 + +LLGIT+ASL+T+SFIS ASFQET RVL +AA G+ D+L+GLKENV Sbjct: 1292 LSTEDKFVSKFTRVLLGITKASLSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENV 1351 Query: 71 VLGGIIP 51 V+G +IP Sbjct: 1352 VVGRLIP 1358
>RPOC_SALTY (P0A2R4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 111 bits (277), Expect = 2e-24 Identities = 62/127 (48%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSD-FLEGEQVEYSRVKIANRE 1291 Query: 239 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L+ + + LLGIT+ASL T+SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1292 LEANGKVGATFSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1352 IVGRLIP 1358
>RPOC_SALTI (P0A2R5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 111 bits (277), Expect = 2e-24 Identities = 62/127 (48%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSD-FLEGEQVEYSRVKIANRE 1291 Query: 239 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L+ + + LLGIT+ASL T+SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1292 LEANGKVGATFSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1352 IVGRLIP 1358
>RPOC_SALPA (Q5PK92) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 111 bits (277), Expect = 2e-24 Identities = 62/127 (48%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSD-FLEGEQVEYSRVKIANRE 1291 Query: 239 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L+ + + LLGIT+ASL T+SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1292 LEANGKVGATFSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1352 IVGRLIP 1358
>RPOC_SALCH (Q57H68) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 111 bits (277), Expect = 2e-24 Identities = 62/127 (48%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ VYR QGV+I+++HIE+I+RQ+ K + G S+ FL GE + R + A R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATIESAGSSD-FLEGEQVEYSRVKIANRE 1291 Query: 239 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L+ + + LLGIT+ASL T+SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1292 LEANGKVGATFSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1352 IVGRLIP 1358
>RPOC_PROAC (Q6A6K7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1293 Score = 111 bits (277), Expect = 2e-24 Identities = 86/234 (36%), Positives = 118/234 (50%), Gaps = 52/234 (22%) Frame = -1 Query: 596 ITQGLPKVXQIFEARSIDSLSPNLER----RIEDWNERXPRIL----------------- 480 ITQGLP+V ++FEARS SP E RI++ + R +L Sbjct: 1007 ITQGLPRVVELFEARSPKGKSPLAEAAGVIRIDESDNRRKLVLVRDDGEDDVEYVVPRRA 1066 Query: 479 -------GVPWGFLIGAELTIAQS------------RIS--------LVNKIXKVYRSQG 381 G G + + RIS LV ++ KVY +QG Sbjct: 1067 RLEFDLDGTHRVIRDGVRVAAGEQLMGGTADPQDVLRISGVRRVQEYLVKEVQKVYNTQG 1126 Query: 380 VQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR-ALDES---IYYRA 213 IH +HIEI+IRQ+ ++ V E G + + +PGEL+ E A R A+ E R Sbjct: 1127 AGIHEKHIEIVIRQMLRRITVIESGDTQM-MPGELVDRGAYEAANRKAVAEGGRPAEGRP 1185 Query: 212 ILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 +L+GIT+ASL T+S++S ASFQET +VL AA G+ D L GLKENV+LG +IP Sbjct: 1186 VLMGITKASLATESWLSAASFQETTKVLTDAAINGKTDTLVGLKENVILGKLIP 1239
>RPOC_VIBVY (Q7MGS0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 110 bits (276), Expect = 2e-24 Identities = 62/127 (48%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 + N++ +VYR QGV+I+++HIE I+RQ+ K ++ G S FLPGE + + + A R Sbjct: 1232 IANEVQEVYRLQGVKINDKHIETIVRQMLRKCTITHAGDSE-FLPGETVEYSQVKIANRN 1290 Query: 239 LD----ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L+ E + LLGIT+ASL T+SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1291 LEAEGKEPARFERELLGITKASLATESFISAASFQETTRVLTEAAVSGKRDDLRGLKENV 1350 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1351 IVGRLIP 1357
>RPOC_VIBVU (Q8DD19) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 110 bits (276), Expect = 2e-24 Identities = 62/127 (48%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 + N++ +VYR QGV+I+++HIE I+RQ+ K ++ G S FLPGE + + + A R Sbjct: 1232 IANEVQEVYRLQGVKINDKHIETIVRQMLRKCTITHAGDSE-FLPGETVEYSQVKIANRN 1290 Query: 239 LD----ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L+ E + LLGIT+ASL T+SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1291 LEAEGKEPARFERELLGITKASLATESFISAASFQETTRVLTEAAVSGKRDDLRGLKENV 1350 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1351 IVGRLIP 1357
>RPOC_DEHE1 (Q3Z8V3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1295 Score = 110 bits (276), Expect = 2e-24 Identities = 60/127 (47%), Positives = 86/127 (67%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 LV ++ KVY SQGV I+++HIE+I RQ+ KVR+ G +++ +PGEL+ R E Sbjct: 1136 LVEEVQKVYYSQGVHINDKHIEVIARQMLIKVRIDSSGDTDL-VPGELVDKFRYEDINAK 1194 Query: 239 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 + E +L+GITRASL+T+S+++ ASFQET RVL AA G++D L GLKENV Sbjct: 1195 VLAEGGEPATAHTVLMGITRASLSTESWLAAASFQETTRVLTDAAIYGKVDKLSGLKENV 1254 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1255 IIGKLIP 1261
>RPOC_STRR6 (Q8DNF1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1225 Score = 110 bits (275), Expect = 3e-24 Identities = 83/229 (36%), Positives = 121/229 (52%), Gaps = 44/229 (19%) Frame = -1 Query: 605 SSGITQGLPKVXQIFEARS------IDSLSPNLERRIEDWNERXPRILG----------V 474 ++ ITQGLP+V +IFEAR+ I + + ED + R ++ V Sbjct: 947 NTDITQGLPRVQEIFEARNPKGEAVITEVKGQVTAIEEDASTRTKKVFVKGETGEGEYVV 1006 Query: 473 PWGFLI----------GAELT--------------IAQSRISLVNKIXKVYRSQGVQIHN 366 P+ + GA LT + L+ ++ KVYRSQGV+I + Sbjct: 1007 PFTARMRVEVGGQVARGAALTEGSIQPKRLLAVRDVLSVETYLLGEVQKVYRSQGVEIGD 1066 Query: 365 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR----ALDESIYYRAILLGI 198 +HIE+++RQ+ KVRV + G +++ + G L+ + A + A R +L+GI Sbjct: 1067 KHIEVMVRQMIRKVRVMDPGDTDLLM-GTLMDINDFTDANKDVLIAGGVPATGRPVLMGI 1125 Query: 197 TRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T+ASL T SF+S ASFQET RVL AA RG+ D L GLKENV++G IIP Sbjct: 1126 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIP 1174
>RPOC_STRPN (Q97NQ8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1225 Score = 110 bits (275), Expect = 3e-24 Identities = 83/229 (36%), Positives = 121/229 (52%), Gaps = 44/229 (19%) Frame = -1 Query: 605 SSGITQGLPKVXQIFEARS------IDSLSPNLERRIEDWNERXPRILG----------V 474 ++ ITQGLP+V +IFEAR+ I + + ED + R ++ V Sbjct: 947 NTDITQGLPRVQEIFEARNPKGEAVITEVKGQVTAIEEDASTRTKKVFVKGETGEGEYVV 1006 Query: 473 PWGFLI----------GAELT--------------IAQSRISLVNKIXKVYRSQGVQIHN 366 P+ + GA LT + L+ ++ KVYRSQGV+I + Sbjct: 1007 PFTARMRVEVGGQVARGAALTEGSIQPKRLLAVRDVLSVETYLLGEVQKVYRSQGVEIGD 1066 Query: 365 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR----ALDESIYYRAILLGI 198 +HIE+++RQ+ KVRV + G +++ + G L+ + A + A R +L+GI Sbjct: 1067 KHIEVMVRQMIRKVRVMDPGDTDLLM-GTLMDINDFTDANKDVLIAGGVPATGRPVLMGI 1125 Query: 197 TRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T+ASL T SF+S ASFQET RVL AA RG+ D L GLKENV++G IIP Sbjct: 1126 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIP 1174
>RPOC_BUCAP (P41185) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1413 Score = 110 bits (275), Expect = 3e-24 Identities = 63/127 (49%), Positives = 88/127 (69%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ +VYR QGV+I+++HIE+IIRQ+ K V + G S FL GE + R + + R Sbjct: 1233 IVNEVQEVYRLQGVKINDKHIEVIIRQMLRKATVIKSGNSE-FLDGEQVEFSRIKISNRI 1291 Query: 239 LDESIYYRAI----LLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L++ A LLGIT+ASL T+SFIS ASFQET RVL ++A G+ D L+GLKENV Sbjct: 1292 LNKQSKIPATFSRDLLGITKASLATESFISAASFQETTRVLTESAVAGKKDELRGLKENV 1351 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1352 IVGRLIP 1358
>RPOC_VIBPA (Q87KQ5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1400 Score = 110 bits (275), Expect = 3e-24 Identities = 62/127 (48%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 + N++ +VYR QGV+I+++HIE I+RQ+ K ++ G S FLPGE + + + A R Sbjct: 1232 IANEVQEVYRLQGVKINDKHIETIVRQMLRKCTITHAGDSE-FLPGEQVEYSQVKIANRN 1290 Query: 239 LD----ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L+ E + LLGIT+ASL T+SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1291 LEAEGKEPARFERELLGITKASLATESFISAASFQETTRVLTEAAVSGKRDDLRGLKENV 1350 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1351 IVGRLIP 1357
>RPOC_STRMU (Q8DS47) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1209 Score = 110 bits (275), Expect = 3e-24 Identities = 82/229 (35%), Positives = 120/229 (52%), Gaps = 44/229 (19%) Frame = -1 Query: 605 SSGITQGLPKVXQIFEARS------IDSLSPNLERRIEDWNERXPRIL------------ 480 ++ ITQGLP++ +IFEAR+ I + + ED R ++ Sbjct: 948 NADITQGLPRIQEIFEARNPKGEAVITEVKGQVTDIEEDAATRTKKVYVKGATGEGEYTV 1007 Query: 479 ----------------GVPW--GFLIGAELTIAQSRIS----LVNKIXKVYRSQGVQIHN 366 G P G + L + +S L+ ++ KVYRSQGV+I + Sbjct: 1008 PFTARMKVQVGDEVHRGAPLTEGSIQPKHLLEVRDTLSVETYLLAEVQKVYRSQGVEIGD 1067 Query: 365 RHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGI 198 +H+E+++RQ+ KVRV + G + + LPG L+ + A R + + R +L+GI Sbjct: 1068 KHVEVMVRQMLRKVRVMDPGDTGL-LPGILMDIADFTDANRDIVIAGGIPATSRPVLMGI 1126 Query: 197 TRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T+ASL T SF+S ASFQET RVL AA RG+ D L GLKENV++G IIP Sbjct: 1127 TKASLETNSFLSAASFQETTRVLTDAAIRGKKDHLLGLKENVIIGKIIP 1175
>RPOC_BACSU (P37871) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1199 Score = 110 bits (274), Expect = 4e-24 Identities = 59/127 (46%), Positives = 89/127 (70%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 L++++ KVYR QGV+I ++H+E+++RQ+ KVRV + G ++V LPG L+ + + A + Sbjct: 1047 LLHEVQKVYRMQGVEIGDKHVEVMVRQMLRKVRVIDAGDTDV-LPGTLLDIHQFTEANKK 1105 Query: 239 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 + + R +LLGIT+ASL T SF+S ASFQET RVL AA +G+ D L GLKENV Sbjct: 1106 VLLEGNRPATGRPVLLGITKASLETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENV 1165 Query: 71 VLGGIIP 51 ++G ++P Sbjct: 1166 IIGKLVP 1172
>RPOC_BACLD (Q65PB4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1199 Score = 110 bits (274), Expect = 4e-24 Identities = 79/225 (35%), Positives = 119/225 (52%), Gaps = 43/225 (19%) Frame = -1 Query: 596 ITQGLPKVXQIFEARS---------IDSLSPNL------ERRIEDWNERXPRILGVPWGF 462 ITQGLP++ ++FEAR+ ID + + ++ I E R P+ Sbjct: 949 ITQGLPRIQELFEARNPKGQATISEIDGVVAEINEVRDKQQEIVVQGEVESRSYTAPYNA 1008 Query: 461 LI----------GAELT--------------IAQSRISLVNKIXKVYRSQGVQIHNRHIE 354 + G LT I + L++++ KVYR QGV+I ++H+E Sbjct: 1009 RLKVTEGEKISRGQVLTEGSVDPKELLKVTDITTVQEYLLHEVQKVYRMQGVEIGDKHVE 1068 Query: 353 IIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITRAS 186 +++RQ+ KVRV + G + V LPG L+ + + A + + R +LLGIT+AS Sbjct: 1069 VMVRQMLRKVRVIDAGDTEV-LPGTLLDIHQFTEANKKVLLEGKRPATGRPVLLGITKAS 1127 Query: 185 LNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 L T SF+S ASFQET RVL AA +G+ D L GLKENV++G ++P Sbjct: 1128 LETDSFLSAASFQETTRVLTDAAIKGKRDELLGLKENVIIGKLVP 1172
>RPOC_SHEON (Q8EK73) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 110 bits (274), Expect = 4e-24 Identities = 64/127 (50%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ VYR QGV+I+++HIE+IIRQ+ K ++ G S FL GE + + R + A R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIIRQMLRKCVITAAGDSE-FLEGEQVEVSRVKIANRE 1291 Query: 239 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L E + LLGIT+ASL T+SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1292 LVEQGKVPATFERELLGITKASLATESFISAASFQETTRVLTEAAVGGKSDNLRGLKENV 1351 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1352 IVGRLIP 1358
>RPOC_PSYAR (Q4FQH4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 110 bits (274), Expect = 4e-24 Identities = 61/127 (48%), Positives = 86/127 (67%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ VYR QGV+I+++HIE+IIRQ+ KV +++ G SN F G+ + + Sbjct: 1226 IVNEVQDVYRLQGVKINDKHIEVIIRQMLRKVEITDGGDSNHF-KGDQVEYADIKALNAK 1284 Query: 239 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L+ + + LLGIT+ASL T+SFIS ASFQET RVL AA G++D L+GLKENV Sbjct: 1285 LEAEDKFPVQFERQLLGITKASLATESFISAASFQETTRVLTAAAVTGKVDELRGLKENV 1344 Query: 71 VLGGIIP 51 V+G +IP Sbjct: 1345 VVGRLIP 1351
>RPOC2_PSEAK (Q3ZJ90) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 3462 Score = 110 bits (274), Expect = 4e-24 Identities = 75/191 (39%), Positives = 113/191 (59%), Gaps = 6/191 (3%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSIDSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTIAQS 429 ++ I QG+PK+ Q+FEAR N + + N + L + L + + +S Sbjct: 3256 KTEDIVQGIPKIEQLFEARE------NFQDELGINNLLKNKFL--VYKTLYHPKEAVRKS 3307 Query: 428 ----RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLR 261 + +++ I VY+SQGV I ++HIEII++Q+TSKVR+ E S + L G+++ L Sbjct: 3308 FEFIQHYIIDGIQYVYQSQGVNISDKHIEIIVKQMTSKVRILEPRNSGL-LRGDVVDLDW 3366 Query: 260 AERAGRAL--DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKG 87 ER + + Y I+LGIT+ASL+ + FIS ASFQET +VL KA R D+L+G Sbjct: 3367 IERINLDILTGKKAQYEPIVLGITKASLDRRGFISAASFQETIKVLTKATILQRRDYLRG 3426 Query: 86 LKENVVLGGII 54 LKENV+LG +I Sbjct: 3427 LKENVILGHLI 3437
>RPOC_SHEVI (Q9KW13) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1409 Score = 110 bits (274), Expect = 4e-24 Identities = 63/127 (49%), Positives = 88/127 (69%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ VYR QGV+I+++HIE+IIRQ+ K +++ G S FL GE + R + A R Sbjct: 1234 IVNEVQDVYRLQGVKINDKHIEVIIRQMLRKCLITDAGDSQ-FLAGEQAEVARVKIANRE 1292 Query: 239 LD----ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L+ + + LLGIT+ASL T+SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1293 LEAQGKKPATFDRELLGITKASLATESFISAASFQETTRVLTEAAVGGKSDKLRGLKENV 1352 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1353 IVGRLIP 1359
>RPOC_AGRT5 (Q8UE09) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1402 Score = 110 bits (274), Expect = 4e-24 Identities = 59/126 (46%), Positives = 85/126 (67%), Gaps = 3/126 (2%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 LVN+I +VYR QGV I+++HIE+I+RQ+ KV +++ G S + + + + R Sbjct: 1228 LVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVEITDAGDSQYIVGDNVDRIEMEDMNDRL 1287 Query: 239 LDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVV 69 ++E Y +LLGIT+ASL T SFIS ASFQET +VL +AA G+ D L+GLKENV+ Sbjct: 1288 IEEGKKPAYGEPVLLGITKASLQTPSFISAASFQETTKVLTEAAIAGKTDTLQGLKENVI 1347 Query: 68 LGGIIP 51 +G +IP Sbjct: 1348 VGRLIP 1353
>RPOC_BLOPB (Q492C0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1416 Score = 109 bits (273), Expect = 5e-24 Identities = 62/127 (48%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ VYR QGV+I+++HIE+I+RQ+ K V G S+ FL GE + R + A R Sbjct: 1237 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKATVIRSGSSD-FLVGEQVEYSRIKIANRK 1295 Query: 239 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L+ I + LLGIT+ASL T+SFIS ASFQET RVL +++ G+ D L+GLKENV Sbjct: 1296 LENEGKVKISFIRNLLGITKASLATESFISAASFQETTRVLTESSVAGKRDELRGLKENV 1355 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1356 IVGRLIP 1362
>RPOC_NITWN (Q3SSX9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1399 Score = 109 bits (272), Expect = 7e-24 Identities = 61/127 (48%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 LVN+I +VYR QGV I+++HIE+I+RQ+ KV + + G +++ + GE I + +R Sbjct: 1227 LVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEIIDQGETDM-ISGEQIDKIEFDRLNLK 1285 Query: 239 LDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 E A +LLGIT+ASL T+SF S ASFQET RVL +AA G++D L+GLKENV Sbjct: 1286 AQEEGKKIATGTPVLLGITKASLQTRSFFSAASFQETTRVLTEAAVNGKVDPLEGLKENV 1345 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1346 IVGRLIP 1352
>RPOBC_WOLTR (Q5GRY9) Bifunctional DNA-directed RNA polymerase, beta and beta'| chain (EC 2.7.7.6) [Includes: DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit); DNA-directed RNA polymerase beta' chain (Transcri Length = 2839 Score = 109 bits (272), Expect = 7e-24 Identities = 59/127 (46%), Positives = 86/127 (67%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 ++++I +VYR QGV+I N+H+E+I++Q+ KV +++ G ++L GE I L ++ Sbjct: 2657 MISEIQQVYRLQGVRIDNKHLEVILKQMLQKVEITDPG-DTMYLVGESIDKLEVDKGNDV 2715 Query: 239 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 + S Y IL GITRASL T+SFIS ASFQET +VL +AA G+ D L GLKENV Sbjct: 2716 MSNSGKRPACYLPILQGITRASLETKSFISAASFQETTKVLTEAAFCGKEDPLSGLKENV 2775 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 2776 IVGRLIP 2782
>RPOC_XANCP (Q8PC55) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 109 bits (272), Expect = 7e-24 Identities = 65/127 (51%), Positives = 86/127 (67%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA-ERAGR 243 LV +I VYR QGV+I+++HIE+I RQ+ KV +++ G S FL GE + R E R Sbjct: 1234 LVKEIQDVYRLQGVKINDKHIEVITRQMLRKVEITDQGNSK-FLNGEQVERQRVIEENAR 1292 Query: 242 ALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 + + Y +LLGIT+ASL T+SFIS ASFQET RVL +AA RG D L+GLKENV Sbjct: 1293 LVTRNELPAKYDPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLRGLKENV 1352 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1353 IVGRLIP 1359
>RPOC_XANC8 (Q4URD3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 109 bits (272), Expect = 7e-24 Identities = 65/127 (51%), Positives = 86/127 (67%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA-ERAGR 243 LV +I VYR QGV+I+++HIE+I RQ+ KV +++ G S FL GE + R E R Sbjct: 1234 LVKEIQDVYRLQGVKINDKHIEVITRQMLRKVEITDQGNSK-FLNGEQVERQRVIEENAR 1292 Query: 242 ALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 + + Y +LLGIT+ASL T+SFIS ASFQET RVL +AA RG D L+GLKENV Sbjct: 1293 LVTRNELPAKYDPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLRGLKENV 1352 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1353 IVGRLIP 1359
>RPOC_HAEDU (Q7VKL8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1420 Score = 109 bits (272), Expect = 7e-24 Identities = 60/127 (47%), Positives = 88/127 (69%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ +VYR QGV+I+++HIE+I+RQ+ K ++ + + FL GE + + R + A R Sbjct: 1233 IVNEVQEVYRLQGVKINDKHIEVIVRQMLRKAVIT-NAYDSEFLEGEQVEVARVKIANRK 1291 Query: 239 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 E + + LLGIT+ASL T+SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1292 RAEEGKPLVEFERELLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1352 IVGRLIP 1358
>RPOC_NITOC (Q3J8Q8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1403 Score = 109 bits (272), Expect = 7e-24 Identities = 61/127 (48%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ +VYR QGV+I+++HIE+II Q+ KV + E G ++ FL GE I R Sbjct: 1232 IVNEVQEVYRLQGVKINDKHIEVIICQMLRKVEIIEPGDTS-FLKGEQIDKPRLLEENEK 1290 Query: 239 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 +++ + +LLGIT+ASL T+SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1291 MEKEDKLPARFEPVLLGITKASLATESFISAASFQETTRVLTEAAVTGKCDELRGLKENV 1350 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1351 IVGRLIP 1357
>RPOC_RHOPA (Q6N4S0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1402 Score = 109 bits (272), Expect = 7e-24 Identities = 82/231 (35%), Positives = 125/231 (54%), Gaps = 45/231 (19%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEAR---------------------------SIDSLSPNLERR-- 516 ++ IT GLP+V ++FEAR SI+ L N E R Sbjct: 1125 KTRDITGGLPRVAELFEARRPKDAAIIAEIAGTIRFGRDYKNKRRLSIEPLDKNEEAREY 1184 Query: 515 ---------IEDWN--ERXPRIL-GVPWGFLIGAELTIAQSRISLVNKIXKVYRSQGVQI 372 ++D + E+ I+ G P I A I + LVN+I +VYR QGV I Sbjct: 1185 LIPKGKHIHLQDGDVVEKGDFIVEGNPAPHDILAIKGIEELAAYLVNEIQEVYRLQGVLI 1244 Query: 371 HNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG-RALDES---IYYRAILL 204 +++HIE+I+RQ+ K+ +++ G +++ + GE + + +A++E +LL Sbjct: 1245 NDKHIEVIVRQMLQKIEITDQGDTDM-ISGEQVDKIEFNALNAKAVEEGKKPATGNPVLL 1303 Query: 203 GITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 GIT+ASL T+SF S ASFQET RVL +AA G++D L+GLKENV++G +IP Sbjct: 1304 GITKASLQTRSFFSAASFQETTRVLTEAAVNGKVDPLEGLKENVIVGRLIP 1354
>RPOC_NEIG1 (Q5F5R6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1391 Score = 108 bits (271), Expect = 9e-24 Identities = 61/127 (48%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAER 252 +V ++ +VYR QGV+I ++HIE+IIRQ+ +V +++ G + F+ GE + + E+ Sbjct: 1236 IVQEVQEVYRLQGVKISDKHIEVIIRQMLRRVNIADAGETG-FITGEQVERGDVMAANEK 1294 Query: 251 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 A E Y ILLGIT+ASL+T SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1295 ALEEGKEPARYENILLGITKASLSTDSFISAASFQETTRVLTEAAIMGKQDELRGLKENV 1354 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1355 IVGRLIP 1361
>RPOC_LACPL (Q88XZ2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1213 Score = 108 bits (271), Expect = 9e-24 Identities = 85/226 (37%), Positives = 120/226 (53%), Gaps = 44/226 (19%) Frame = -1 Query: 596 ITQGLPKVXQIFEARS------IDSLSPNLERRIEDWNERXPRI---------------- 483 ITQGLP+V +I E+R+ I ++ +E E+ ER + Sbjct: 949 ITQGLPRVQEIVESRNPKGRAEISEVTGTVELIEENPAERTKEVTVKGETDTRTYTLPLT 1008 Query: 482 --LGVPWGFLI--GAELTIAQ--------------SRISLVNKIXKVYRSQGVQIHNRHI 357 + V G I GA L I + L+ ++ KVYR QGV+I ++H+ Sbjct: 1009 ARMAVSEGDFIHRGAALNIGSIDPKQLIQVRDVLSTENYLLREVQKVYRMQGVEIGDKHV 1068 Query: 356 EIIIRQVTSKVRVSEDGMSNVFLPGELIGL--LRAERAGRALDESI--YYRAILLGITRA 189 EI+IRQ+ KVRV + G ++V LPG L+ + + E + I R ++LGIT+A Sbjct: 1069 EIMIRQMLRKVRVMDPGDTDV-LPGTLMDIADFKDENYKTLIAGGIPATSRPVILGITKA 1127 Query: 188 SLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 +L T SF+S ASFQET RVL AA RG+ D L GLKENV++G IIP Sbjct: 1128 ALETNSFLSAASFQETTRVLTDAAIRGKNDPLIGLKENVIIGKIIP 1173
>RPOC_CORGL (Q8NT25) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1333 Score = 108 bits (271), Expect = 9e-24 Identities = 66/142 (46%), Positives = 91/142 (64%), Gaps = 7/142 (4%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGR- 243 L++++ VYR+QGV IH++HIEIIIRQ+ + V E G S FLPG L+ L A+ A Sbjct: 1155 LIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIESG-STEFLPGSLVDLSEAKLANSE 1213 Query: 242 ---ALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 A + R+ ++GIT+ASL T+S++S ASFQET RVL AA R D L GLKENV Sbjct: 1214 AIGAGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKENV 1273 Query: 71 VLGGIIPV---VPDSKNLCIVP 15 ++G +IP + +N+ I P Sbjct: 1274 IIGKLIPAGTGISRYRNISIKP 1295
>RPOC_ACIAD (Q6FF89) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1397 Score = 108 bits (271), Expect = 9e-24 Identities = 61/127 (48%), Positives = 88/127 (69%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ VYR QGV+I+++HIE+I+RQ+ KV ++ DG F+ GE + +R + +A Sbjct: 1229 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKVDIT-DGGDTSFIKGEQVDYIRVVQENQA 1287 Query: 239 LDESIYYRAI----LLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 + + A L+GIT+ASL+T SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1288 VLAQNKFPAKFERQLMGITKASLSTDSFISAASFQETTRVLTEAAVTGKEDDLRGLKENV 1347 Query: 71 VLGGIIP 51 V+G +IP Sbjct: 1348 VVGRLIP 1354
>RPOC_VIBCH (Q9KV29) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1401 Score = 108 bits (271), Expect = 9e-24 Identities = 62/127 (48%), Positives = 86/127 (67%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 + N++ +VYR QGV+I+++HIE I+RQ+ K ++ G S FLPGE + + + A R Sbjct: 1232 IANEVQEVYRLQGVKINDKHIETIVRQMLRKCTITFAGDSE-FLPGETVEYSQVKIANRK 1290 Query: 239 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L E + LLGIT+ASL T+SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1291 LVEEGKEPARFERELLGITKASLATESFISAASFQETTRVLTEAAVSGKRDDLRGLKENV 1350 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1351 IVGRLIP 1357
>RPOC_WIGBR (Q8D232) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 108 bits (270), Expect = 1e-23 Identities = 61/125 (48%), Positives = 84/125 (67%), Gaps = 2/125 (1%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ VYR QGV+I+++HIE+I+RQ+ K + +G + FL GE R A Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLKKATIL-NGSQSEFLEGEQTEFSRIRIANNN 1291 Query: 239 LDES--IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVL 66 S I Y LLGIT++SL T+SFIS ASFQET RVL ++A G+ID L+GLKENV++ Sbjct: 1292 TKSSDKINYSRDLLGITKSSLATESFISAASFQETTRVLTESAVSGKIDELRGLKENVIV 1351 Query: 65 GGIIP 51 G +IP Sbjct: 1352 GRLIP 1356
>RPOC_NEIMB (Q9K1J1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1391 Score = 108 bits (270), Expect = 1e-23 Identities = 60/127 (47%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAER 252 +V ++ +VYR QGV+I ++HIE+IIRQ+ +V +++ G + F+ GE + + E+ Sbjct: 1236 IVQEVQEVYRLQGVKISDKHIEVIIRQMLRRVNIADAGETG-FITGEQVERGDVMAANEK 1294 Query: 251 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 A E Y +LLGIT+ASL+T SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1295 ALEEGKEPARYENVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKQDELRGLKENV 1354 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1355 IVGRLIP 1361
>RPOC_NEIMA (Q9JX03) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1391 Score = 108 bits (270), Expect = 1e-23 Identities = 60/127 (47%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAER 252 +V ++ +VYR QGV+I ++HIE+IIRQ+ +V +++ G + F+ GE + + E+ Sbjct: 1236 IVQEVQEVYRLQGVKISDKHIEVIIRQMLRRVNIADAGETG-FITGEQVERGDVMAANEK 1294 Query: 251 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 A E Y +LLGIT+ASL+T SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1295 ALEEGKEPARYENVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKQDELRGLKENV 1354 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1355 IVGRLIP 1361
>RPOC_PSEHT (Q3ILP8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1390 Score = 108 bits (270), Expect = 1e-23 Identities = 62/127 (48%), Positives = 85/127 (66%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ +VYR QGV+I+++HIE IIRQ+ K + G ++ FL GE I + R A R Sbjct: 1218 IVNEVQEVYRLQGVKINDKHIETIIRQMLRKCTIMHGGDTD-FLAGEQIEVARVNIANRD 1276 Query: 239 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L+ + L+GIT+ASL T+SFIS ASFQET RVL AA G+ D L+GLKENV Sbjct: 1277 LEAQGKIPAKFEIQLMGITKASLATESFISAASFQETTRVLTDAAVNGKSDELRGLKENV 1336 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1337 IVGRLIP 1343
>RPOC_PELCD (Q3A6Q3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 108 bits (270), Expect = 1e-23 Identities = 58/127 (45%), Positives = 88/127 (69%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 LV+++ +VYR QGV+I+++HIE+I+RQ+ +VR+ E G + FL + + E R Sbjct: 1219 LVDEVQEVYRLQGVKINDKHIEVIVRQMLRRVRIKEPGNTR-FLADDQVERWEFECENRK 1277 Query: 239 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 + ++LGIT+ASL+T+SFIS ASFQET +VL +AA G+ID+L+GLKENV Sbjct: 1278 VVGEGGAPAVGEPLMLGITKASLSTESFISAASFQETTKVLTQAAIEGKIDYLRGLKENV 1337 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1338 IMGRLIP 1344
>RPOC_PARUW (Q6MDM0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1388 Score = 108 bits (270), Expect = 1e-23 Identities = 61/127 (48%), Positives = 88/127 (69%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 LVN++ +VYR QGV I+++HIEII+RQ+ KVRV + G +++ L GE + E + Sbjct: 1234 LVNQVQEVYRLQGVDINDKHIEIIVRQMLKKVRVIDPGDTSL-LYGEEVDKKEFEVENQK 1292 Query: 239 LDE----SIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 + + + +LLGIT+ASL+T+SFIS ASFQ+T RVL +AA G+ D+L G KENV Sbjct: 1293 VSQEGGKAAQATPVLLGITKASLSTESFISAASFQDTTRVLTEAACAGKTDYLVGFKENV 1352 Query: 71 VLGGIIP 51 ++G IIP Sbjct: 1353 IMGHIIP 1359
>RPOC_XANOR (Q8KTH8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1405 Score = 108 bits (269), Expect = 2e-23 Identities = 65/127 (51%), Positives = 85/127 (66%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA-ERAGR 243 LV +I VYR QGV+I+++HIE+I RQ+ KV + + G S FL GE + R E R Sbjct: 1234 LVKEIQDVYRLQGVKINDKHIEVITRQMLRKVEIVDQGNSK-FLNGEQVERQRVIEENAR 1292 Query: 242 ALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 + + Y +LLGIT+ASL T+SFIS ASFQET RVL +AA RG D L+GLKENV Sbjct: 1293 LVKRNELPAKYDPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLRGLKENV 1352 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1353 IVGRLIP 1359
>RPOC_DESVH (Q727C6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1385 Score = 108 bits (269), Expect = 2e-23 Identities = 63/128 (49%), Positives = 87/128 (67%), Gaps = 5/128 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI--GLLRAERAG 246 L ++I +VYR QGV I ++HIE+I+RQ+ KV V + G FL GE + G R E Sbjct: 1221 LTDEIQEVYRFQGVAIDDKHIEVIVRQMLKKVTVLDPG-GTTFLVGEQVDKGEFRVENT- 1278 Query: 245 RALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKEN 75 RA+ E ++LGIT+ASL T SFIS ASFQET +VL +A+ RG++D+L+GLKEN Sbjct: 1279 RAMGEGRTPATAEPLVLGITQASLTTSSFISAASFQETTKVLTEASLRGKMDYLRGLKEN 1338 Query: 74 VVLGGIIP 51 V++G +IP Sbjct: 1339 VIVGRLIP 1346
>RPOC_RALSO (Q8XUZ9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1409 Score = 108 bits (269), Expect = 2e-23 Identities = 62/133 (46%), Positives = 92/133 (69%), Gaps = 10/133 (7%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +V+++ VYR QGV+I+++HIE+I+RQ+ +V++ + G + F+PGE + ER+ Sbjct: 1239 IVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQIVDVGDTK-FIPGEQV-----ERS-EL 1291 Query: 239 LDES----------IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLK 90 LDE+ Y +LLGIT+ASL+T SFIS ASFQET RVL +AA G++D L+ Sbjct: 1292 LDENDKVIAEGKRPATYENLLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKVDDLR 1351 Query: 89 GLKENVVLGGIIP 51 GLKENV++G +IP Sbjct: 1352 GLKENVIVGRLIP 1364
>RPOC_BRAJA (Q89J75) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1398 Score = 108 bits (269), Expect = 2e-23 Identities = 60/127 (47%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 LVN+I +VYR QGV I+++HIE+I+RQ+ KV V++ G +++ + GE + + + Sbjct: 1226 LVNEIQEVYRLQGVLINDKHIEVIVRQMLQKVEVTDQGDTDM-ISGEQVDKIEFDALNEK 1284 Query: 239 LDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 E A +LLGIT+ASL T+SF S ASFQET RVL +AA G++D L+GLKENV Sbjct: 1285 AKEEGKKIATGTPVLLGITKASLQTRSFFSAASFQETTRVLTEAAVNGKVDPLEGLKENV 1344 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1345 IVGRLIP 1351
>RPOC_CORDI (Q6NJF6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1336 Score = 108 bits (269), Expect = 2e-23 Identities = 65/142 (45%), Positives = 90/142 (63%), Gaps = 7/142 (4%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 LV+++ VYR+QGV IH++HIEIIIRQ+ + V E G S FLPG L+ L A+ A Sbjct: 1156 LVDEVQDVYRAQGVAIHDKHIEIIIRQMLRRGTVIESG-STEFLPGTLVDLSEAKAANAE 1214 Query: 239 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 + R+ ++GIT+ASL T+S++S ASFQET RVL AA R D L GLKENV Sbjct: 1215 ALANGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKENV 1274 Query: 71 VLGGIIPV---VPDSKNLCIVP 15 ++G +IP + +N+ + P Sbjct: 1275 IIGKLIPAGTGISRYRNISVKP 1296
>RPOC_COREF (Q8FS96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1333 Score = 108 bits (269), Expect = 2e-23 Identities = 65/142 (45%), Positives = 90/142 (63%), Gaps = 7/142 (4%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 L++++ VYR+QGV IH++HIEIIIRQ+ + V E G S FLPG L+ L A+ A Sbjct: 1155 LIDEVQAVYRAQGVAIHDKHIEIIIRQMLRRGTVIESG-STEFLPGSLVDLSEAKLANSE 1213 Query: 239 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 + R+ ++GIT+ASL T+S++S ASFQET RVL AA R D L GLKENV Sbjct: 1214 AIANGGQPAELRSEIMGITKASLATESWLSAASFQETTRVLTDAAINKRSDKLIGLKENV 1273 Query: 71 VLGGIIPV---VPDSKNLCIVP 15 ++G +IP + +N+ I P Sbjct: 1274 IIGKLIPAGTGISRYRNISIKP 1295
>RPOC_XYLFT (Q87A33) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 108 bits (269), Expect = 2e-23 Identities = 67/133 (50%), Positives = 87/133 (65%), Gaps = 10/133 (7%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 LV +I VYR QGV+I+++HIE+I RQ+ KV + + G S FL GE + ER R Sbjct: 1233 LVKEIQDVYRLQGVKINDKHIEVITRQMLRKVEIVDQGNSK-FLNGEQV-----ERQ-RV 1285 Query: 239 LDESIY----------YRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLK 90 +DE+ Y +LLGIT+ASL T+SFIS ASFQET RVL +AA RG D L+ Sbjct: 1286 IDENAKLIARNELPAKYNPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLR 1345 Query: 89 GLKENVVLGGIIP 51 GLKENV++G +IP Sbjct: 1346 GLKENVIVGRLIP 1358
>RPOC_XYLFA (Q9PA87) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 108 bits (269), Expect = 2e-23 Identities = 67/133 (50%), Positives = 87/133 (65%), Gaps = 10/133 (7%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 LV +I VYR QGV+I+++HIE+I RQ+ KV + + G S FL GE + ER R Sbjct: 1233 LVKEIQDVYRLQGVKINDKHIEVITRQMLRKVEIVDQGNSK-FLNGEQV-----ERQ-RV 1285 Query: 239 LDESIY----------YRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLK 90 +DE+ Y +LLGIT+ASL T+SFIS ASFQET RVL +AA RG D L+ Sbjct: 1286 IDENAKLIARNELPAKYNPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLR 1345 Query: 89 GLKENVVLGGIIP 51 GLKENV++G +IP Sbjct: 1346 GLKENVIVGRLIP 1358
>RPOC_XANC5 (Q3BWZ0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 108 bits (269), Expect = 2e-23 Identities = 65/127 (51%), Positives = 85/127 (66%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA-ERAGR 243 LV +I VYR QGV+I+++HIE+I RQ+ KV + + G S FL GE + R E R Sbjct: 1233 LVKEIQDVYRLQGVKINDKHIEVITRQMLRKVEIVDQGNSK-FLNGEQVERQRVIEENAR 1291 Query: 242 ALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 + + Y +LLGIT+ASL T+SFIS ASFQET RVL +AA RG D L+GLKENV Sbjct: 1292 LVKRNELPAKYDPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLRGLKENV 1351 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1352 IVGRLIP 1358
>RPOC_XANAC (Q8PNS9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 108 bits (269), Expect = 2e-23 Identities = 65/127 (51%), Positives = 85/127 (66%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA-ERAGR 243 LV +I VYR QGV+I+++HIE+I RQ+ KV + + G S FL GE + R E R Sbjct: 1233 LVKEIQDVYRLQGVKINDKHIEVITRQMLRKVEIVDQGNSK-FLNGEQVERQRVIEENAR 1291 Query: 242 ALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 + + Y +LLGIT+ASL T+SFIS ASFQET RVL +AA RG D L+GLKENV Sbjct: 1292 LVKRNELPAKYDPVLLGITKASLATESFISAASFQETTRVLTEAAVRGTRDNLRGLKENV 1351 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1352 IVGRLIP 1358
>RPOC_RALEJ (Q46WD5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1415 Score = 108 bits (269), Expect = 2e-23 Identities = 63/133 (47%), Positives = 92/133 (69%), Gaps = 10/133 (7%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +V+++ VYR QGV+I+++HIE+I+RQ+ +V+V++ G + F+PGE + ER+ Sbjct: 1239 IVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQVADVGDTK-FIPGEQV-----ERS-EL 1291 Query: 239 LDES----------IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLK 90 LDE+ Y +LLGIT+ASL+T SFIS ASFQET RVL +AA G+ D L+ Sbjct: 1292 LDENDRVIAEGKRPATYENLLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKTDDLR 1351 Query: 89 GLKENVVLGGIIP 51 GLKENV++G +IP Sbjct: 1352 GLKENVIVGRLIP 1364
>RPOC_BURS3 (Q39KH4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1414 Score = 107 bits (268), Expect = 2e-23 Identities = 62/133 (46%), Positives = 93/133 (69%), Gaps = 10/133 (7%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +V+++ VYR QGV+I+++HIE+I+RQ+ +V+++++G + F+PGE + ER+ Sbjct: 1239 IVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQITDNGDTR-FIPGEQV-----ERSDM- 1291 Query: 239 LDES----------IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLK 90 LDE+ Y +LLGIT+ASL+T SFIS ASFQET RVL +AA G+ D L+ Sbjct: 1292 LDENDRMIAEDKRPASYDNVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLR 1351 Query: 89 GLKENVVLGGIIP 51 GLKENV++G +IP Sbjct: 1352 GLKENVIVGRLIP 1364
>RPOC_RHIME (Q92QH6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1401 Score = 107 bits (268), Expect = 2e-23 Identities = 59/127 (46%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 LVN+I +VYR QGV I+++HIE+I+RQ+ KV +++ G S ++ G+ + + E + Sbjct: 1227 LVNEIQEVYRLQGVVINDKHIEVIVRQMLQKVEITDAGDST-YIVGDNVDRIELEDVNDS 1285 Query: 239 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L + + +LLGIT+ASL T SFIS ASFQET +VL +AA G+ D L+GLKENV Sbjct: 1286 LLAEGKKPAFGEPVLLGITKASLQTPSFISAASFQETTKVLTEAAVAGKTDNLQGLKENV 1345 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1346 IVGRLIP 1352
>RPOC_EHRCJ (Q3YST4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1410 Score = 107 bits (267), Expect = 3e-23 Identities = 60/127 (47%), Positives = 84/127 (66%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 ++++I +VYR QGV+I N+HIEII+RQ+ KV + E G ++L GE I + + + Sbjct: 1229 MISEIQQVYRLQGVRIDNKHIEIILRQMLQKVEIFEPG-DTMYLVGENIDMEEVIKTNNS 1287 Query: 239 L----DESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 + Y IL GITRASL+T SF+S ASFQET +VL +AA G+ D L GLKENV Sbjct: 1288 MVKMGKSPAKYAPILQGITRASLDTNSFVSAASFQETTKVLTEAAFSGKEDSLYGLKENV 1347 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1348 IVGRLIP 1354
>RPOC_LACAC (Q5FM96) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1217 Score = 107 bits (266), Expect = 4e-23 Identities = 82/226 (36%), Positives = 117/226 (51%), Gaps = 44/226 (19%) Frame = -1 Query: 596 ITQGLPKVXQIFEARS-------------IDSLSPNLE---RRIEDWNERXPRILGVPWG 465 ITQGLP+V ++FEAR+ IDS+ N R I + R VP+ Sbjct: 953 ITQGLPRVQELFEARNPKGRATISEVDGVIDSIQENPAEHTREITVKGKIDTRSYSVPYT 1012 Query: 464 FLI----------GAELTIAQ--------------SRISLVNKIXKVYRSQGVQIHNRHI 357 + G +LT+ + ++ ++ K YR QGV I ++H+ Sbjct: 1013 ASVAVSEGDYVHRGDKLTLGSVDPKELIQVTDTLTTEKYILAEVQKAYRMQGVDIADKHV 1072 Query: 356 EIIIRQVTSKVRVSEDGMSNVFLPGEL--IGLLRAERAGRALDESIYYRA--ILLGITRA 189 E++ RQ+ KVRV + G +++ LPGE+ IG R + I A I+L IT+A Sbjct: 1073 EVLTRQMLQKVRVLDPGETDI-LPGEVMDIGQFRDRNKEVIISGGIPATAQSIILSITKA 1131 Query: 188 SLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 +L T SF+S ASFQET RVL A+ RG+ D L GLKENV++G IIP Sbjct: 1132 ALETNSFLSAASFQETTRVLTDASIRGKNDPLLGLKENVIIGKIIP 1177
>RPOC_BURPS (Q63Q04) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1412 Score = 107 bits (266), Expect = 4e-23 Identities = 63/133 (47%), Positives = 92/133 (69%), Gaps = 10/133 (7%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +V+++ VYR QGV+I+++HIE+I+RQ+ +V++ ++G + F+PGE + ER+ Sbjct: 1239 IVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQIVDNGDTR-FIPGEQV-----ERSDM- 1291 Query: 239 LDES----------IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLK 90 LDE+ Y ILLGIT+ASL+T SFIS ASFQET RVL +AA G+ D L+ Sbjct: 1292 LDENDRMIAEDKRPATYDNILLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLR 1351 Query: 89 GLKENVVLGGIIP 51 GLKENV++G +IP Sbjct: 1352 GLKENVIVGRLIP 1364
>RPOC_BURP1 (Q3JMQ4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1412 Score = 107 bits (266), Expect = 4e-23 Identities = 63/133 (47%), Positives = 92/133 (69%), Gaps = 10/133 (7%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +V+++ VYR QGV+I+++HIE+I+RQ+ +V++ ++G + F+PGE + ER+ Sbjct: 1239 IVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQIVDNGDTR-FIPGEQV-----ERSDM- 1291 Query: 239 LDES----------IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLK 90 LDE+ Y ILLGIT+ASL+T SFIS ASFQET RVL +AA G+ D L+ Sbjct: 1292 LDENDRMIAEDKRPATYDNILLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLR 1351 Query: 89 GLKENVVLGGIIP 51 GLKENV++G +IP Sbjct: 1352 GLKENVIVGRLIP 1364
>RPOC_BURMA (Q62GJ7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1412 Score = 107 bits (266), Expect = 4e-23 Identities = 63/133 (47%), Positives = 92/133 (69%), Gaps = 10/133 (7%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +V+++ VYR QGV+I+++HIE+I+RQ+ +V++ ++G + F+PGE + ER+ Sbjct: 1239 IVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVQIVDNGDTR-FIPGEQV-----ERSDM- 1291 Query: 239 LDES----------IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLK 90 LDE+ Y ILLGIT+ASL+T SFIS ASFQET RVL +AA G+ D L+ Sbjct: 1292 LDENDRMIAEDKRPATYDNILLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLR 1351 Query: 89 GLKENVVLGGIIP 51 GLKENV++G +IP Sbjct: 1352 GLKENVIVGRLIP 1364
>RPOC_ERWCT (Q6DAM9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 107 bits (266), Expect = 4e-23 Identities = 61/127 (48%), Positives = 86/127 (67%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 + N++ +VYR QGV+I+++HIE+I+RQ+ K + G S FL GE + R + A R Sbjct: 1233 ITNEVQEVYRLQGVKINDKHIEVIVRQMLRKGTIVSAG-STEFLEGEQAEMSRIKIANRK 1291 Query: 239 LDE----SIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L+ + + LLGIT+ASL T+SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1292 LEADGKITATFSRDLLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1352 IVGRLIP 1358
>RPOC_BUCAI (P57145) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1407 Score = 107 bits (266), Expect = 4e-23 Identities = 62/127 (48%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ +VYR QGV+I+++HIE+IIRQ+ K V + S+ FL GE + + + R Sbjct: 1233 IVNEVQEVYRLQGVKINDKHIEVIIRQMLRKATVVKSRDSD-FLEGEQVEFSHIKISNRM 1291 Query: 239 LDESIYYRAI----LLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 LD+ A LLGIT+ASL T+SFIS ASFQET RVL ++A G+ D L+GLKENV Sbjct: 1292 LDKKKKMPATFSRDLLGITKASLATESFISAASFQETTRVLTESAVAGKRDELRGLKENV 1351 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1352 IVGRLIP 1358
>RPOC_SYMTH (Q67JT4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1179 Score = 107 bits (266), Expect = 4e-23 Identities = 79/224 (35%), Positives = 119/224 (53%), Gaps = 42/224 (18%) Frame = -1 Query: 596 ITQGLPKVXQIFEARSI--DSLSPNLERRIEDWNERXPRIL------------GVPWGFL 459 ITQGLP+V ++FEAR ++ L+ + ++ R + +P+G Sbjct: 928 ITQGLPRVEELFEARKPKGQAIIAELDGEVSITEQKGRREITITSEDGESVTYSIPYGAR 987 Query: 458 I----------GAELT--------------IAQSRISLVNKIXKVYRSQGVQIHNRHIEI 351 + G ELT + + L+ ++ KVY QGV I+++HIEI Sbjct: 988 VKVRSGQFVEAGDELTEGSVNPHDLLRVKGLRGVQRYLLREVQKVYNLQGVDINDKHIEI 1047 Query: 350 IIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG-RALDES---IYYRAILLGITRASL 183 ++RQ+ KV+V + G +++ LPG + + E R + E R +LLGIT+ASL Sbjct: 1048 MVRQMLRKVKVEDPGDTDL-LPGGFVDIFDFEDENERVIMEGGVPAVARPMLLGITKASL 1106 Query: 182 NTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 T SF+S ASFQET RVL AA +G+ D L GLKENV++G +IP Sbjct: 1107 ATDSFLSAASFQETTRVLTDAAIKGKRDPLLGLKENVIIGKLIP 1150
>RPOC_BLOFL (Q7VRP8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1420 Score = 106 bits (265), Expect = 5e-23 Identities = 60/127 (47%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ +VYR QGV+I+++HIE+IIRQ+ K V G S+ FL GE + R + + Sbjct: 1244 IVNEVQEVYRLQGVKINDKHIEVIIRQMLRKAIVIRSGDSD-FLAGEQVEYARIKIVNQT 1302 Query: 239 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L+ + + LLGIT+ASL T+SFIS ASFQET RVL +++ G+ D L+GLKENV Sbjct: 1303 LEREGKVKVSFVRNLLGITKASLATESFISAASFQETTRVLTESSVAGKKDDLRGLKENV 1362 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1363 IVGRLIP 1369
>RPOC_YERPS (Q66FQ1) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 106 bits (265), Expect = 5e-23 Identities = 62/128 (48%), Positives = 89/128 (69%), Gaps = 5/128 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 + N++ +VYR QGV+I+++HIE+I+RQ+ K + + G ++ FL GE + R + A R Sbjct: 1233 ITNEVQEVYRLQGVKINDKHIEVIVRQMLRKGTIVDAGSTD-FLEGEQAEMSRVKIANRK 1291 Query: 239 LD-----ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKEN 75 L E+ + R LLGIT+ASL T+SFIS ASFQET RVL +AA G+ D L+GLKEN Sbjct: 1292 LAAEGKIEATFTRD-LLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 Query: 74 VVLGGIIP 51 V++G +IP Sbjct: 1351 VIVGRLIP 1358
>RPOC_YERPE (Q8D1H3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1406 Score = 106 bits (265), Expect = 5e-23 Identities = 62/128 (48%), Positives = 89/128 (69%), Gaps = 5/128 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 + N++ +VYR QGV+I+++HIE+I+RQ+ K + + G ++ FL GE + R + A R Sbjct: 1233 ITNEVQEVYRLQGVKINDKHIEVIVRQMLRKGTIVDAGSTD-FLEGEQAEMSRVKIANRK 1291 Query: 239 LD-----ESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKEN 75 L E+ + R LLGIT+ASL T+SFIS ASFQET RVL +AA G+ D L+GLKEN Sbjct: 1292 LAAEGKIEATFTRD-LLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKEN 1350 Query: 74 VVLGGIIP 51 V++G +IP Sbjct: 1351 VIVGRLIP 1358
>RPOC_PASMU (Q9CK92) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1417 Score = 106 bits (264), Expect = 6e-23 Identities = 59/127 (46%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ +VYR QGV+I+++HIE+I+RQ+ K V++ + FL GE + + R + R Sbjct: 1233 IVNEVQEVYRLQGVKINDKHIEVIVRQMLRKGIVTK-AYDSEFLEGEQVEVARVKIVNRK 1291 Query: 239 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 + + + LLGIT+ASL T+SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1292 REAEGKPLVEFERELLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1352 IVGRLIP 1358
>RPOC_HAEI8 (Q4QN34) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1416 Score = 106 bits (264), Expect = 6e-23 Identities = 58/127 (45%), Positives = 86/127 (67%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ VYR QGV+I+++HIE+I+RQ+ K +++ + FL GE + + R + R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKAVITK-AYDSEFLEGEQVEVARVKIVNRQ 1291 Query: 239 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 + + + LLGIT+ASL T+SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1292 REAEGKPPVEFERELLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1352 IVGRLIP 1358
>RPOC_BORPE (Q7W0R8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1414 Score = 106 bits (264), Expect = 6e-23 Identities = 59/127 (46%), Positives = 86/127 (67%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAER 252 +V+++ VYR QGV+I+++HIE+I+RQ+ +V + + G + F+PGE + L +R Sbjct: 1232 IVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVNIVDPGDTE-FIPGEQVERSELLNENDR 1290 Query: 251 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 Y +LLGIT+ASL+T SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1291 VVAEDKRPASYDNVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENV 1350 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1351 IVGRLIP 1357
>RPOC_BORPA (Q7W2G8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1414 Score = 106 bits (264), Expect = 6e-23 Identities = 59/127 (46%), Positives = 86/127 (67%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAER 252 +V+++ VYR QGV+I+++HIE+I+RQ+ +V + + G + F+PGE + L +R Sbjct: 1232 IVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVNIVDPGDTE-FIPGEQVERSELLNENDR 1290 Query: 251 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 Y +LLGIT+ASL+T SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1291 VVAEDKRPASYDNVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENV 1350 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1351 IVGRLIP 1357
>RPOC_BORBR (Q7WRD8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1414 Score = 106 bits (264), Expect = 6e-23 Identities = 59/127 (46%), Positives = 86/127 (67%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAER 252 +V+++ VYR QGV+I+++HIE+I+RQ+ +V + + G + F+PGE + L +R Sbjct: 1232 IVDEVQDVYRLQGVKINDKHIEVIVRQMLRRVNIVDPGDTE-FIPGEQVERSELLNENDR 1290 Query: 251 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 Y +LLGIT+ASL+T SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1291 VVAEDKRPASYDNVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENV 1350 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1351 IVGRLIP 1357
>RPOC_NITEU (Q82T76) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 106 bits (264), Expect = 6e-23 Identities = 59/125 (47%), Positives = 85/125 (68%), Gaps = 4/125 (3%) Frame = -1 Query: 413 NKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAERAG 246 N++ VYR QGV+I+++HIE+I+RQ+ +V++ G S+ F+PGE + L E+ Sbjct: 1247 NEVQDVYRLQGVRINDKHIEVIVRQMLRRVQIMNAGDSS-FIPGEQVERAEVLTENEKLI 1305 Query: 245 RALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVL 66 Y +LLGIT+ASL+T SFIS ASFQET RVL +A+ G+ D L+GLKENV++ Sbjct: 1306 AENKMPATYEYVLLGITKASLSTDSFISAASFQETTRVLTEASIMGKKDDLRGLKENVIV 1365 Query: 65 GGIIP 51 G +IP Sbjct: 1366 GRLIP 1370
>RPOC_HAEIN (P43739) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1415 Score = 106 bits (264), Expect = 6e-23 Identities = 58/127 (45%), Positives = 86/127 (67%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ VYR QGV+I+++HIE+I+RQ+ K +++ + FL GE + + R + R Sbjct: 1233 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKAVITK-AYDSEFLEGEQVEVARVKIVNRQ 1291 Query: 239 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 + + + LLGIT+ASL T+SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1292 REAEGKPPVEFERELLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1352 IVGRLIP 1358
>RPOC_MANSM (Q65W40) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1420 Score = 105 bits (263), Expect = 8e-23 Identities = 58/127 (45%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ +VYR QGV+I+++HIE+I+RQ+ K +++ + FL GE + + R + R Sbjct: 1233 IVNEVQEVYRLQGVKINDKHIEVIVRQMLRKGIITK-AYDSEFLEGEQVEVARVKIVNRK 1291 Query: 239 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 + + + LLGIT+ASL T+SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1292 REAEGKPPVEFERELLGITKASLATESFISAASFQETTRVLTEAAVAGKRDELRGLKENV 1351 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1352 IVGRLIP 1358
>RPOC_CHRVO (Q7NQE7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 105 bits (263), Expect = 8e-23 Identities = 59/127 (46%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAER 252 +V ++ +VYR QGV+I+++HIE+IIRQ+ +V +++ G + F+ GE + L ++ Sbjct: 1234 IVQEVQEVYRLQGVKINDKHIEVIIRQMLRRVIITDSGDTE-FIQGEQVERADVLEMNDK 1292 Query: 251 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 E Y +LLGIT+ASL+T SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1293 MMAENKEPAQYENVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENV 1352 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1353 IVGRLIP 1359
>RPOC_AQUPY (Q9X6Y2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1576 Score = 105 bits (263), Expect = 8e-23 Identities = 63/145 (43%), Positives = 94/145 (64%), Gaps = 10/145 (6%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG-------LLR 261 L+ ++ VY+ QGV I+++H EIIIRQ+ KVR+ + G S FL GE + + R Sbjct: 1418 LLKEVQMVYKLQGVDINDKHFEIIIRQMLKKVRIIDPGDSR-FLVGEEVDKEELEEEIQR 1476 Query: 260 AERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLK 81 + G L ++ +L+GITRA+L+T+S+IS ASFQET RVL A+ G+ID L+GLK Sbjct: 1477 IKLEGGKLPKA---EPVLVGITRAALSTRSWISAASFQETTRVLTDASVEGKIDELRGLK 1533 Query: 80 ENVVLGGIIPV---VPDSKNLCIVP 15 ENV++G +IP V + K + ++P Sbjct: 1534 ENVIIGNLIPAGTGVDEYKEVDVIP 1558
>RPOC_RICCN (Q9RH40) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1372 Score = 105 bits (262), Expect = 1e-22 Identities = 60/127 (47%), Positives = 85/127 (66%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG-R 243 +VN++ VYR QGV+I ++HIE+IIRQ+ KV V++ G L GE I + + Sbjct: 1225 IVNEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEVTDSG-GTTLLVGEKIDRHEFDEINEK 1283 Query: 242 ALDESIY---YRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 A+ + + IL GIT+ASL T+SFIS ASFQET RVL +AA G++D L+GLKENV Sbjct: 1284 AMKNGLKPAEAQLILQGITKASLQTRSFISAASFQETTRVLTEAAIAGKVDKLRGLKENV 1343 Query: 71 VLGGIIP 51 ++G ++P Sbjct: 1344 IVGRLVP 1350
>RPOC_THIDA (Q3SLQ5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1398 Score = 105 bits (261), Expect = 1e-22 Identities = 60/127 (47%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAER 252 + +++ VYR QGV+I+++HIE+I+RQ+ +V V++ G + + +PGE + L + Sbjct: 1233 ITDEVQDVYRLQGVKINDKHIEVIVRQMLRRVVVADPGDTGL-IPGEQVERSEVLQINDE 1291 Query: 251 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 A E Y ILLGIT+ASL+T SFIS ASFQET RVL +AA G+ D L+GLKENV Sbjct: 1292 MIAAGKEPAVYDPILLGITKASLSTDSFISAASFQETTRVLTEAAIMGKKDELRGLKENV 1351 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1352 IVGRLIP 1358
>RPOC_CHLCV (Q822J2) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1393 Score = 105 bits (261), Expect = 1e-22 Identities = 60/127 (47%), Positives = 82/127 (64%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 LVN++ +VYR QGV I+++HIEII+RQ+ KVR+++ G L GE + R Sbjct: 1234 LVNEVQEVYRLQGVDINDKHIEIIVRQMLQKVRITDPG-DTTLLFGEEVNKKEFYEENRR 1292 Query: 239 LDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 +E A +LLGIT+ASL T+SFIS ASFQ+T RVL AA + D+L G KENV Sbjct: 1293 TEEDGGKPAQAVPVLLGITKASLGTESFISAASFQDTTRVLTDAACSSKTDYLLGFKENV 1352 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1353 IMGHMIP 1359
>RPOC_IDILO (Q5QWA4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1411 Score = 105 bits (261), Expect = 1e-22 Identities = 62/130 (47%), Positives = 91/130 (70%), Gaps = 7/130 (5%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGL-------LR 261 +VN++ +VYR QGV+I+++HIE I+RQ+ K + G +N+ L GE++ + + Sbjct: 1233 IVNEVQEVYRLQGVKINDKHIETIVRQMLRKALILRAGDTNL-LEGEMVEMSEVLAANAK 1291 Query: 260 AERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLK 81 AE G+ +I+ R LLGIT+ASL+T+SFIS ASFQET RVL +AA G+ D L+GLK Sbjct: 1292 AEADGKK--PAIFERQ-LLGITKASLSTESFISAASFQETTRVLTEAAVGGKKDSLRGLK 1348 Query: 80 ENVVLGGIIP 51 ENV++G +IP Sbjct: 1349 ENVIVGRLIP 1358
>RPOC_RICFE (Q4UKD5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1372 Score = 104 bits (260), Expect = 2e-22 Identities = 60/127 (47%), Positives = 84/127 (66%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG-R 243 +V ++ VYR QGV+I ++HIE+IIRQ+ KV +++ G L GE I E + Sbjct: 1225 IVKEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEITDSG-GTTLLAGEKIDRHEFEEINEK 1283 Query: 242 ALDESIY---YRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 A+ + + IL GIT+ASL T+SFIS ASFQET RVL +AA G+ID L+GLKENV Sbjct: 1284 AIKNGLKPAEAQLILQGITKASLQTRSFISAASFQETTRVLTEAAIAGKIDKLRGLKENV 1343 Query: 71 VLGGIIP 51 ++G ++P Sbjct: 1344 IVGRLVP 1350
>RPOC_BUCBP (Q89B21) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 104 bits (260), Expect = 2e-22 Identities = 60/127 (47%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 ++N++ +VYR QGV+I+++HIE+IIRQ+ K + + S FL GE + R + + R Sbjct: 1233 IINEVQEVYRLQGVKINDKHIEVIIRQMLRKATIIKSEHSE-FLDGEQVEYSRIKVSNRN 1291 Query: 239 LDESIYYRAI----LLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L + AI LLGIT+ASL T+SFIS ASFQET RVL +++ G+ D L+GLKENV Sbjct: 1292 LSKIGKKTAIFSRDLLGITKASLATESFISAASFQETTRVLTESSVAGKKDELRGLKENV 1351 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1352 IVGRLIP 1358
>RPOC_CLOTE (Q890N5) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1135 Score = 104 bits (259), Expect = 2e-22 Identities = 75/216 (34%), Positives = 116/216 (53%), Gaps = 44/216 (20%) Frame = -1 Query: 602 SGITQGLPKVXQIFEARSIDSLSPNLE-----RRIEDWNERXPRILG--------VPWGF 462 S ITQGLP+V ++FEAR L+ E R E +R ++G +P+G Sbjct: 924 SDITQGLPRVEELFEARKPKGLAIVSEINGTIRIDETKKKRTVVVIGETEEISYDIPFGS 983 Query: 461 --------LIGAELTIAQSRIS----------------LVNKIXKVYRSQGVQIHNRHIE 354 +I A I + ++ L++++ KVYR QGV I+++H+E Sbjct: 984 RLKVSNGDVISAGDEITEGSVNPHDVLRIKGPNGVKNYLLSEVQKVYRLQGVDINDKHLE 1043 Query: 353 IIIRQVTSKVRVSEDGMSNVFLPGELIGLL-------RAERAGRALDESIYYRAILLGIT 195 +++RQ+T K+++ E G + FLPG ++ + +AE G+ E+ R LLGIT Sbjct: 1044 VVVRQMTRKIKIEESGDTE-FLPGTMVDIFDFQEENAKAEEEGK---ETAKGRITLLGIT 1099 Query: 194 RASLNTQSFISEASFQETARVLAKAAXRGRIDWLKG 87 +A+L T SF+S ASFQET RVL AA +G++D L G Sbjct: 1100 KAALATDSFLSSASFQETTRVLTDAAIKGKVDPLLG 1135
>RPOC_AQUAE (O67763) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1574 Score = 104 bits (259), Expect = 2e-22 Identities = 62/145 (42%), Positives = 94/145 (64%), Gaps = 10/145 (6%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG-------LLR 261 L+ ++ VY+ QGV I+++H EIII+Q+ KVR+ + G S FL GE + + R Sbjct: 1418 LLKEVQMVYKLQGVDINDKHFEIIIKQMLKKVRIIDPGDSR-FLVGEEVDKEELEEEIQR 1476 Query: 260 AERAGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLK 81 + G L ++ +L+GITRA+L+T+S+IS ASFQET RVL A+ G+ID L+GLK Sbjct: 1477 IKLEGGKLPKA---EPVLVGITRAALSTRSWISAASFQETTRVLTDASVEGKIDELRGLK 1533 Query: 80 ENVVLGGIIPV---VPDSKNLCIVP 15 ENV++G IIP V + + + ++P Sbjct: 1534 ENVIIGNIIPAGTGVDEYREVDVIP 1558
>RPOC_CHLMU (Q9PK79) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 104 bits (259), Expect = 2e-22 Identities = 60/127 (47%), Positives = 82/127 (64%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 LVN++ +VYR QGV I+++HIEII+RQ+ KVR+++ G L GE + R Sbjct: 1236 LVNEVQEVYRLQGVDINDKHIEIIVRQMLQKVRITDPG-DTTLLFGEDVDKKEFYEENRR 1294 Query: 239 LDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 +E A +LLGIT+ASL T+SFIS ASFQ+T RVL AA + D+L G KENV Sbjct: 1295 TEEDGGKPAQAVPVLLGITKASLGTESFISAASFQDTTRVLTDAACSSKTDYLLGFKENV 1354 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1355 IMGHMIP 1361
>RPOC_LEPIN (Q8F0S3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 104 bits (259), Expect = 2e-22 Identities = 57/135 (42%), Positives = 88/135 (65%), Gaps = 3/135 (2%) Frame = -1 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 ++ LV ++ +VYR QGV I+++HIE+++RQ+ KV +++ G ++ ++ L+ E Sbjct: 1231 QVYLVQEVQEVYRLQGVHINDKHIEVVVRQMLRKVLITDSGDTSFVNQQQIDRLVFNEEN 1290 Query: 248 GRALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKE 78 R + E ILLG+T+ASLNT+SF S ASFQET +VL AA +G+ D L GLKE Sbjct: 1291 KRVIAEGGSPAESVPILLGLTKASLNTESFFSAASFQETTKVLTDAAIKGKTDNLMGLKE 1350 Query: 77 NVVLGGIIPVVPDSK 33 NV++G +IP +K Sbjct: 1351 NVIIGHMIPAGTGTK 1365
>RPOC_LEPIC (Q72UA7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1404 Score = 104 bits (259), Expect = 2e-22 Identities = 57/135 (42%), Positives = 88/135 (65%), Gaps = 3/135 (2%) Frame = -1 Query: 428 RISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERA 249 ++ LV ++ +VYR QGV I+++HIE+++RQ+ KV +++ G ++ ++ L+ E Sbjct: 1231 QVYLVQEVQEVYRLQGVHINDKHIEVVVRQMLRKVLITDSGDTSFVNQQQIDRLVFNEEN 1290 Query: 248 GRALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKE 78 R + E ILLG+T+ASLNT+SF S ASFQET +VL AA +G+ D L GLKE Sbjct: 1291 KRVIAEGGSPAESVPILLGLTKASLNTESFFSAASFQETTKVLTDAAIKGKTDNLMGLKE 1350 Query: 77 NVVLGGIIPVVPDSK 33 NV++G +IP +K Sbjct: 1351 NVIIGHMIPAGTGTK 1365
>RPOC_EHRRW (Q5HC04) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1411 Score = 104 bits (259), Expect = 2e-22 Identities = 58/127 (45%), Positives = 84/127 (66%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 ++ +I +VYR QGV+I N+HIE+I+RQ+ KV + E G ++L GE + + + Sbjct: 1228 MIAEIQQVYRLQGVRIDNKHIEVILRQMLQKVEIFEPG-DTMYLVGENVDVEEVLKTNSN 1286 Query: 239 LDE----SIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 +++ Y IL GITRASL+T SF+S ASFQET +VL +AA G+ D L GLKENV Sbjct: 1287 MEKIGKSPAKYIPILQGITRASLDTNSFVSAASFQETTKVLTEAAFSGKEDSLYGLKENV 1346 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1347 IVGRLIP 1353
>RPOC_CHLPN (Q9Z999) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1393 Score = 103 bits (258), Expect = 3e-22 Identities = 60/127 (47%), Positives = 82/127 (64%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 LVN++ +VYR QGV I+++HIEII+RQ+ KVR+++ G L GE + R Sbjct: 1234 LVNEVQEVYRLQGVDINDKHIEIIVRQMLQKVRITDPG-DTTLLFGEDVNKKEFYEENRR 1292 Query: 239 LDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 +E A +LLGIT+ASL T+SFIS ASFQ+T RVL AA + D+L G KENV Sbjct: 1293 TEEDGGKPAQAVPVLLGITKASLGTESFISAASFQDTTRVLTDAACCSKTDYLLGFKENV 1352 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1353 IMGHMIP 1359
>RPOC_COXBU (Q83ET0) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1414 Score = 103 bits (258), Expect = 3e-22 Identities = 57/127 (44%), Positives = 86/127 (67%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +VN++ +VYR QGV+I+++HIE+I+RQ+ KV++++ G +++ L E + R Sbjct: 1232 IVNEVQEVYRLQGVKINDKHIEVIVRQMLRKVKITQPGDTDL-LQNEQVERTRVREENEK 1290 Query: 239 LDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 + + ILLGIT+ASL T+SFIS ASFQET RVL A+ G+ D L+GLKENV Sbjct: 1291 IIKKDGTVAKVEPILLGITKASLATESFISAASFQETTRVLTAASVAGKRDDLRGLKENV 1350 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1351 IVGRLIP 1357
>RPOC_CHLTR (O84316) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 103 bits (258), Expect = 3e-22 Identities = 59/127 (46%), Positives = 82/127 (64%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 LVN++ +VYR QGV I+++H+EII+RQ+ KVR+++ G L GE + R Sbjct: 1236 LVNEVQEVYRLQGVDINDKHVEIIVRQMLQKVRITDPG-DTTLLFGEDVDKKEFYEENRR 1294 Query: 239 LDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 +E A +LLGIT+ASL T+SFIS ASFQ+T RVL AA + D+L G KENV Sbjct: 1295 TEEDGGKPAQAVPVLLGITKASLGTESFISAASFQDTTRVLTDAACSSKTDYLLGFKENV 1354 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1355 IMGHMIP 1361
>RPOC_CHLTA (Q3KM48) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1396 Score = 103 bits (258), Expect = 3e-22 Identities = 59/127 (46%), Positives = 82/127 (64%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 LVN++ +VYR QGV I+++H+EII+RQ+ KVR+++ G L GE + R Sbjct: 1236 LVNEVQEVYRLQGVDINDKHVEIIVRQMLQKVRITDPG-DTTLLFGEDVDKKEFYEENRR 1294 Query: 239 LDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 +E A +LLGIT+ASL T+SFIS ASFQ+T RVL AA + D+L G KENV Sbjct: 1295 TEEDGGKPAQAVPVLLGITKASLGTESFISAASFQDTTRVLTDAACSSKTDYLLGFKENV 1354 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1355 IMGHMIP 1361
>RPOC_RHOS4 (Q3J5S9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1415 Score = 103 bits (258), Expect = 3e-22 Identities = 56/127 (44%), Positives = 88/127 (69%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG-R 243 +++++ +VYR QGV+I+++HIE+I+RQ+ K + + G + + L GE + + + Sbjct: 1229 MIDEVQEVYRLQGVKINDKHIEVIVRQMLQKYEILDSGETTL-LKGEHVDKAELDEVNQK 1287 Query: 242 ALDESI---YYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 A+D + + ILLGIT+ASL T+SFIS ASFQET RVL +A+ +G+ D L GLKENV Sbjct: 1288 AMDHGMRPAHAEPILLGITKASLQTRSFISAASFQETTRVLTEASVQGKRDKLVGLKENV 1347 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1348 IVGRLIP 1354
>RPOC_EHRRG (Q5FFD8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1411 Score = 103 bits (258), Expect = 3e-22 Identities = 58/127 (45%), Positives = 84/127 (66%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 ++ +I +VYR QGV+I N+HIE+I+RQ+ KV + E G ++L GE + + + Sbjct: 1228 MIAEIQQVYRLQGVRIDNKHIEVILRQMLQKVEIFEPG-DTMYLIGENVDVEEVLKTNSN 1286 Query: 239 LDE----SIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 +++ Y IL GITRASL+T SF+S ASFQET +VL +AA G+ D L GLKENV Sbjct: 1287 MEKIGKSPAKYIPILQGITRASLDTNSFVSAASFQETTKVLTEAAFSGKEDSLYGLKENV 1346 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1347 IVGRLIP 1353
>RPOC_CHLAB (Q5L5I4) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1393 Score = 103 bits (257), Expect = 4e-22 Identities = 58/127 (45%), Positives = 82/127 (64%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 LVN++ +VYR QGV I+++H+EII+RQ+ KVR+++ G L GE + + Sbjct: 1234 LVNEVQEVYRLQGVDINDKHVEIIVRQMLQKVRITDPG-DTTLLFGEEVNKKEFYEENKR 1292 Query: 239 LDESIYYRA----ILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 +E A +LLGIT+ASL T+SFIS ASFQ+T RVL AA + D+L G KENV Sbjct: 1293 TEEEGGKPAQAVPVLLGITKASLGTESFISAASFQDTTRVLTDAACSSKTDYLLGFKENV 1352 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1353 IMGHMIP 1359
>RPOC_RICTY (Q68XM7) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1372 Score = 103 bits (256), Expect = 5e-22 Identities = 59/127 (46%), Positives = 84/127 (66%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG-R 243 +V ++ VYR QGV+I ++HIE+IIRQ+ KV V++ G L GE I + + Sbjct: 1225 IVKEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEVTDSG-GTTLLVGEKIDRHEFDEINEK 1283 Query: 242 ALDESIY---YRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 A+ + + IL GIT+ASL T+SFIS ASFQET RVL +AA G++D L+GLKENV Sbjct: 1284 AMKNGLKPAEAQLILQGITKASLQTRSFISAASFQETTRVLTEAAIAGKVDKLRGLKENV 1343 Query: 71 VLGGIIP 51 ++G ++P Sbjct: 1344 IVGRLVP 1350
>RPOC_RICPR (Q9ZE20) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1372 Score = 103 bits (256), Expect = 5e-22 Identities = 59/127 (46%), Positives = 84/127 (66%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAG-R 243 +V ++ VYR QGV+I ++HIE+IIRQ+ KV V++ G L GE I + + Sbjct: 1225 IVKEVQAVYRLQGVKIDDKHIEVIIRQMLQKVEVTDSG-GTTLLVGEKIDRHEFDEINAK 1283 Query: 242 ALDESIY---YRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 A+ + + IL GIT+ASL T+SFIS ASFQET RVL +AA G++D L+GLKENV Sbjct: 1284 AMKNGLKPAEAQLILQGITKASLQTRSFISAASFQETTRVLTEAAIAGKVDKLRGLKENV 1343 Query: 71 VLGGIIP 51 ++G ++P Sbjct: 1344 IVGRLVP 1350
>RPOC_BDEBA (Q6MJ10) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1375 Score = 103 bits (256), Expect = 5e-22 Identities = 58/127 (45%), Positives = 84/127 (66%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIG----LLRAER 252 LV++I +VYR QGV I+++HIE+I+RQ+ KV + + G S FL GE + + ER Sbjct: 1213 LVDEIQEVYRLQGVGINDKHIEVIVRQMLRKVEIRDAGDSR-FLAGEQVERYAYMEENER 1271 Query: 251 AGRALDESIYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 + + +LLGIT+ SL+T S+IS ASFQET +VL +AA R D L+GLKEN+ Sbjct: 1272 INKEGGQPATCSPLLLGITKVSLSTDSWISAASFQETTKVLTEAAINSRTDHLRGLKENI 1331 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1332 IMGRLIP 1338
>RPOC_THET8 (Q8RQE8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1524 Score = 103 bits (256), Expect = 5e-22 Identities = 76/227 (33%), Positives = 121/227 (53%), Gaps = 42/227 (18%) Frame = -1 Query: 605 SSGITQGLPKVXQIFEARSIDSLSPNLER----RIEDWNERXP----------------- 489 ++ ITQGLP+V ++FEAR + + E RIE+ E+ Sbjct: 1249 AADITQGLPRVIELFEARRPKAKAVISEIDGVVRIEETEEKLSVFVESEGFSKEYKLPKE 1308 Query: 488 -RILGVPWGFLIGAELTIAQSRIS----------------LVNKIXKVYRSQGVQIHNRH 360 R+L V G + A + + I LV +I KVYR+QGV++H++H Sbjct: 1309 ARLL-VKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKH 1367 Query: 359 IEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITR 192 IEI++RQ+ V V++ G S + L G+++ E L + ++ +L+G+T+ Sbjct: 1368 IEIVVRQMMKYVEVTDPGDSRL-LEGQVLEKWDVEALNERLIAEGKTPVAWKPLLMGVTK 1426 Query: 191 ASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 ++L+T+S++S ASFQ T VL +AA G+ D L GLKENV+LG +IP Sbjct: 1427 SALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIP 1473
>RPOC_AZOSE (Q5P338) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1409 Score = 102 bits (255), Expect = 7e-22 Identities = 59/135 (43%), Positives = 89/135 (65%), Gaps = 12/135 (8%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRA 240 +++++ VYR QGV+I+++HIE+I+RQ+ +V +++ G S +R E+ R+ Sbjct: 1237 IIDEVQDVYRLQGVKINDKHIEVIVRQMLRRVVINDAGNSR---------FIREEQVERS 1287 Query: 239 --LDES----------IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDW 96 LDE+ Y+ +LLGIT+ASL+T SFIS ASFQET RVL +AA G+ D Sbjct: 1288 EVLDENDRIEAEGKLPAQYQNVLLGITKASLSTDSFISAASFQETTRVLTEAAIMGKRDD 1347 Query: 95 LKGLKENVVLGGIIP 51 L+GLKENV++G +IP Sbjct: 1348 LRGLKENVIVGRLIP 1362
>RPOC_DESDG (Q30X04) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1386 Score = 102 bits (255), Expect = 7e-22 Identities = 62/128 (48%), Positives = 86/128 (67%), Gaps = 5/128 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGL--LRAERAG 246 LV +I VYR QGV I ++HIE+I+RQ+ KV V + G ++ FL GE + R E Sbjct: 1222 LVEEIQDVYRFQGVGIDDKHIEVIVRQMLKKVTVLDPGQTS-FLVGEQVDKAEFRIENQ- 1279 Query: 245 RALDES---IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKEN 75 +A++E ++LGIT+ASL T SFIS ASFQET +VL +A+ RG+ D L+GLKEN Sbjct: 1280 KAIEEGRTPATAEPLVLGITQASLTTSSFISAASFQETTKVLTEASLRGKNDHLRGLKEN 1339 Query: 74 VVLGGIIP 51 V++G +IP Sbjct: 1340 VIVGRLIP 1347
>RPOC_THEAQ (Q9KWU6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1524 Score = 102 bits (255), Expect = 7e-22 Identities = 76/224 (33%), Positives = 120/224 (53%), Gaps = 42/224 (18%) Frame = -1 Query: 596 ITQGLPKVXQIFEARSIDSLSPNLER----RIEDWNERXP------------------RI 483 ITQGLP+V ++FEAR + + E RIE+ +R R+ Sbjct: 1252 ITQGLPRVIELFEARRPKAKAVISEIDGVVRIEEGEDRLSVFVESEGFSKEYKLPKDARL 1311 Query: 482 LGVPWGFLIGAELTIAQSRIS----------------LVNKIXKVYRSQGVQIHNRHIEI 351 L V G + A + + I LV++I KVYR+QGV++H++HIEI Sbjct: 1312 L-VKDGDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVDEIQKVYRAQGVKLHDKHIEI 1370 Query: 350 IIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRALDES----IYYRAILLGITRASL 183 ++RQ+ V V++ G S + L G+++ E L + ++ +L+G+T+++L Sbjct: 1371 VVRQMLKYVEVTDPGDSRL-LEGQVLEKWDVEALNERLIAEGKVPVAWKPLLMGVTKSAL 1429 Query: 182 NTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 +T+S++S ASFQ T VL +AA G+ D L GLKENV+LG +IP Sbjct: 1430 STKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIP 1473
>RPOC_THET2 (Q72HM6) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1513 Score = 102 bits (254), Expect = 9e-22 Identities = 75/227 (33%), Positives = 120/227 (52%), Gaps = 42/227 (18%) Frame = -1 Query: 605 SSGITQGLPKVXQIFEARSIDSLSPNLER----RIEDWNERXP----------------- 489 ++ ITQGLP+V ++FEAR + + E RIE+ E+ Sbjct: 1238 AADITQGLPRVIELFEARRPKAKAVISEIDGVVRIEETEEKLSVFVESEGFSKEYKLPKE 1297 Query: 488 -RILGVPWGFLIGAELTIAQSRIS----------------LVNKIXKVYRSQGVQIHNRH 360 R+L G + A + + I LV +I KVYR+QGV++H++H Sbjct: 1298 ARLLAKD-GDYVEAGQPLTRGAIDPHQLLEAKGPEAVERYLVEEIQKVYRAQGVKLHDKH 1356 Query: 359 IEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRAERAGRAL----DESIYYRAILLGITR 192 IEI++RQ+ V V++ G S + L G+++ E L + ++ +L+G+T+ Sbjct: 1357 IEIVVRQMMKYVEVTDPGDSRL-LEGQVLEKWDVEALNERLIAEGKTPVAWKPLLMGVTK 1415 Query: 191 ASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIP 51 ++L+T+S++S ASFQ T VL +AA G+ D L GLKENV+LG +IP Sbjct: 1416 SALSTKSWLSAASFQNTTHVLTEAAIAGKKDELIGLKENVILGRLIP 1462
>RPOBC_WOLSU (Q7MA56) Bifunctional DNA-directed RNA polymerase, beta and beta'| chain (EC 2.7.7.6) [Includes: DNA-directed RNA polymerase beta chain (Transcriptase beta chain) (RNA polymerase beta subunit); DNA-directed RNA polymerase beta' chain (Transcri Length = 2883 Score = 102 bits (253), Expect = 1e-21 Identities = 79/231 (34%), Positives = 118/231 (51%), Gaps = 44/231 (19%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARS---------IDS---------------LSPNLERRIEDWN 501 +S IT GLP+V ++FEAR ID ++ + R E Sbjct: 2636 KSKDITGGLPRVSELFEARKPKDPAVLAEIDGVVSFGKPIRGKERIIITADDGRTTEYAV 2695 Query: 500 ERXPRILGVPWGFLIGAELTIAQSRIS----------------LVNKIXKVYRSQGVQIH 369 ++ IL V G + A +I +S +V+++ +VYR QGV I Sbjct: 2696 DKSKHIL-VHHGEFVHAGESITDGIVSSHDILRISGEKELHKYIVSEVQQVYRRQGVNIA 2754 Query: 368 NRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA----ERAGRALDESIYYRAILLG 201 ++HIEII+ Q+ +VR+ + G + F+ G+L+ ER R E +LLG Sbjct: 2755 DKHIEIIVSQMLRQVRIVDSGNTK-FIEGDLVSKRHFKEENERTIRLGGEPAIAEPVLLG 2813 Query: 200 ITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENVVLGGIIPV 48 ITRA++ + S IS ASFQET +VL +A+ +ID+L+ LKENVVLG +IPV Sbjct: 2814 ITRAAIGSDSIISAASFQETTKVLTEASIAAKIDFLEDLKENVVLGRMIPV 2864
>RPOC2_CHLVU (P12465) DNA-directed RNA polymerase beta'' chain (EC 2.7.7.6) (PEP)| (Plastid-encoded RNA polymerase beta'' subunit) (RNA polymerase beta'' subunit) Length = 1562 Score = 101 bits (252), Expect = 1e-21 Identities = 59/191 (30%), Positives = 109/191 (57%), Gaps = 7/191 (3%) Frame = -1 Query: 608 RSSGITQGLPKVXQIFEARSI---DSLSPNLERRIEDWNERXPRILGVPWGFLIGAELTI 438 ++ I QG+PK+ Q+FEAR + + N+ R+ + R+ FL +L++ Sbjct: 1370 QTEDIVQGIPKIEQLFEARETKDGEIIRYNMHFRLNSFFSLAKRVKP----FLEAFDLSL 1425 Query: 437 AQSRISLVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLRA 258 + LV + + Y +QGV I +H+E+++RQ+T++VR++ G LPGE I L Sbjct: 1426 LYIQRFLVKTLLEAYSNQGVNIAEKHVEVVVRQMTARVRITF-GKDTSLLPGEFIQLRLL 1484 Query: 257 ERAGRALDES----IYYRAILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLK 90 E R+L E+ Y ++LG+T++ L ++SF+ ASFQ+ ++VL ++A + D+L+ Sbjct: 1485 EEINRSLVEAKKEPALYEPVILGLTKSVLQSESFLLAASFQQVSKVLVRSALATKTDFLR 1544 Query: 89 GLKENVVLGGI 57 GL + + + + Sbjct: 1545 GLMKPLYVASL 1555
>RPOC_LEGPL (Q5WZL8) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1401 Score = 101 bits (252), Expect = 1e-21 Identities = 62/127 (48%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI---GLLRAERA 249 +VN++ VYR QGV+I+++HIE+I+RQ+ K ++ G S FL GE + +L+ Sbjct: 1226 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKRVITFAGDSK-FLVGEQVEESAMLQENDK 1284 Query: 248 GRALDESIYYRA-ILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 A + I ILLGIT+ASL T+SFIS ASFQET RVL +AA G++D L+GLKENV Sbjct: 1285 LLAEGKQIARGTPILLGITKASLATESFISAASFQETTRVLTEAAVSGKVDELRGLKENV 1344 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1345 MVGRLIP 1351
>RPOC_LEGPH (Q5ZYP9) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1401 Score = 101 bits (252), Expect = 1e-21 Identities = 62/127 (48%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI---GLLRAERA 249 +VN++ VYR QGV+I+++HIE+I+RQ+ K ++ G S FL GE + +L+ Sbjct: 1226 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKRVITFAGDSK-FLVGEQVEESAMLQENDK 1284 Query: 248 GRALDESIYYRA-ILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 A + I ILLGIT+ASL T+SFIS ASFQET RVL +AA G++D L+GLKENV Sbjct: 1285 LLAEGKQIARGTPILLGITKASLATESFISAASFQETTRVLTEAAVSGKVDELRGLKENV 1344 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1345 MVGRLIP 1351
>RPOC_LEGPA (Q5X865) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1401 Score = 101 bits (252), Expect = 1e-21 Identities = 62/127 (48%), Positives = 87/127 (68%), Gaps = 4/127 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELI---GLLRAERA 249 +VN++ VYR QGV+I+++HIE+I+RQ+ K ++ G S FL GE + +L+ Sbjct: 1226 IVNEVQDVYRLQGVKINDKHIEVIVRQMLRKRVITFAGDSK-FLVGEQVEESAMLQENDK 1284 Query: 248 GRALDESIYYRA-ILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 A + I ILLGIT+ASL T+SFIS ASFQET RVL +AA G++D L+GLKENV Sbjct: 1285 LLAEGKQIARGTPILLGITKASLATESFISAASFQETTRVLTEAAVSGKVDELRGLKENV 1344 Query: 71 VLGGIIP 51 ++G +IP Sbjct: 1345 MVGRLIP 1351
>RPOC_DESPS (Q6AP77) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1349 Score = 101 bits (251), Expect = 2e-21 Identities = 60/126 (47%), Positives = 86/126 (68%), Gaps = 4/126 (3%) Frame = -1 Query: 419 LVNKIXKVYRSQGVQIHNRHIEIIIRQVTSKVRVSEDGMSNVFLPGELIGLLR-AERAGR 243 LV++I +VYR QGV+I+++HIE+I+RQ+ +V ++ S F+ GE + + E R Sbjct: 1215 LVDEIQEVYRLQGVKINDKHIEVIVRQMLKRVHITRANDSK-FMIGENVEWWKFEEERDR 1273 Query: 242 ALDESIYYRA---ILLGITRASLNTQSFISEASFQETARVLAKAAXRGRIDWLKGLKENV 72 L E A +LLG+T+ASL+T+SFIS ASFQET +VL AA GR+D L GLKENV Sbjct: 1274 LLAEGKKPGAAEPLLLGVTKASLSTESFISAASFQETTKVLTNAAMSGRVDELLGLKENV 1333 Query: 71 VLGGII 54 ++G +I Sbjct: 1334 IMGRLI 1339 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 88,857,658 Number of Sequences: 219361 Number of extensions: 1756081 Number of successful extensions: 5227 Number of sequences better than 10.0: 331 Number of HSP's better than 10.0 without gapping: 4572 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4960 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5424720305 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
