ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27j06 |
|---|---|
| Clone Library Name | barley_pub |
>IDHP_MEDSA (Q40345) Isocitrate dehydrogenase [NADP], chloroplast precursor (EC| 1.1.1.42) (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) (Fragment) Length = 433 Score = 78.2 bits (191), Expect = 5e-15 Identities = 39/55 (70%), Positives = 46/55 (83%) Frame = -1 Query: 356 ARLXEFAQKLEXACVXTVESGKMTKDLALLVHGSSKVTRSDYLNTEEFIDAVAAE 192 A L +F +KLE AC+ VESGKMTKDLAL++HG SK++R YLNTEEFIDAVAAE Sbjct: 373 ATLLDFTEKLEAACIGVVESGKMTKDLALILHG-SKLSREHYLNTEEFIDAVAAE 426
>IDHC_SOYBN (Q06197) Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)| (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) Length = 413 Score = 78.2 bits (191), Expect = 5e-15 Identities = 38/55 (69%), Positives = 47/55 (85%) Frame = -1 Query: 356 ARLXEFAQKLEXACVXTVESGKMTKDLALLVHGSSKVTRSDYLNTEEFIDAVAAE 192 A+L +F +KLE AC+ VE+GKMTKDLAL++HG SK++R YLNTEEFIDAVAAE Sbjct: 353 AKLLDFTEKLEAACIGVVEAGKMTKDLALILHG-SKLSREHYLNTEEFIDAVAAE 406
>IDHC_TOBAC (P50218) Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)| (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) Length = 415 Score = 77.4 bits (189), Expect = 8e-15 Identities = 38/54 (70%), Positives = 45/54 (83%) Frame = -1 Query: 353 RLXEFAQKLEXACVXTVESGKMTKDLALLVHGSSKVTRSDYLNTEEFIDAVAAE 192 RL +F +KLE AC+ VESGKMTKDLAL++HG SK++R YLNTEEFIDAVA E Sbjct: 353 RLLDFTEKLEAACIGAVESGKMTKDLALIIHG-SKLSRDHYLNTEEFIDAVADE 405
>IDHC_SOLTU (P50217) Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)| (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) Length = 416 Score = 74.7 bits (182), Expect = 5e-14 Identities = 36/54 (66%), Positives = 43/54 (79%) Frame = -1 Query: 353 RLXEFAQKLEXACVXTVESGKMTKDLALLVHGSSKVTRSDYLNTEEFIDAVAAE 192 RL +F +KLE AC+ VESGKMTKDLAL++ SK++R YLNTEEFIDAVA E Sbjct: 353 RLLDFTEKLEAACIGAVESGKMTKDLALIIIHGSKLSREHYLNTEEFIDAVADE 406
>IDHC_MOUSE (O88844) Isocitrate dehydrogenase [NADP] cytoplasmic (EC 1.1.1.42)| (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) Length = 414 Score = 56.2 bits (134), Expect = 2e-08 Identities = 27/48 (56%), Positives = 33/48 (68%) Frame = -1 Query: 350 LXEFAQKLEXACVXTVESGKMTKDLALLVHGSSKVTRSDYLNTEEFID 207 L FA+ LE C+ T+E+G MTKDLA + G V RSDYLNT EF+D Sbjct: 352 LSFFAKALEDVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMD 399
>IDHC_MICOH (Q9Z2K8) Isocitrate dehydrogenase [NADP] cytoplasmic (EC 1.1.1.42)| (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) Length = 414 Score = 56.2 bits (134), Expect = 2e-08 Identities = 27/48 (56%), Positives = 33/48 (68%) Frame = -1 Query: 350 LXEFAQKLEXACVXTVESGKMTKDLALLVHGSSKVTRSDYLNTEEFID 207 L FA+ LE C+ T+E+G MTKDLA + G V RSDYLNT EF+D Sbjct: 352 LSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMD 399
>IDHC_MICME (Q9Z2K9) Isocitrate dehydrogenase [NADP] cytoplasmic (EC 1.1.1.42)| (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) Length = 414 Score = 56.2 bits (134), Expect = 2e-08 Identities = 27/48 (56%), Positives = 33/48 (68%) Frame = -1 Query: 350 LXEFAQKLEXACVXTVESGKMTKDLALLVHGSSKVTRSDYLNTEEFID 207 L FA+ LE C+ T+E+G MTKDLA + G V RSDYLNT EF+D Sbjct: 352 LSFFAKALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMD 399
>IDHC_RAT (P41562) Isocitrate dehydrogenase [NADP] cytoplasmic (EC 1.1.1.42)| (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) Length = 414 Score = 55.8 bits (133), Expect = 2e-08 Identities = 27/48 (56%), Positives = 32/48 (66%) Frame = -1 Query: 350 LXEFAQKLEXACVXTVESGKMTKDLALLVHGSSKVTRSDYLNTEEFID 207 L FA LE C+ T+E+G MTKDLA + G V RSDYLNT EF+D Sbjct: 352 LSFFANALEEVCIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMD 399
>IDHP_PIG (P33198) Isocitrate dehydrogenase [NADP], mitochondrial precursor| (EC 1.1.1.42) (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) (ICD-M) (Fragment) Length = 421 Score = 55.5 bits (132), Expect = 3e-08 Identities = 28/51 (54%), Positives = 35/51 (68%), Gaps = 1/51 (1%) Frame = -1 Query: 350 LXEFAQKLEXACVXTVESGKMTKDLALLVHGSSKVTRSD-YLNTEEFIDAV 201 L FAQ LE CV TVESG MTKDLA +HG S V ++ +LNT +F+D + Sbjct: 360 LIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTI 410
>IDHP_BOVIN (Q04467) Isocitrate dehydrogenase [NADP], mitochondrial precursor| (EC 1.1.1.42) (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) (ICD-M) Length = 452 Score = 55.5 bits (132), Expect = 3e-08 Identities = 28/51 (54%), Positives = 35/51 (68%), Gaps = 1/51 (1%) Frame = -1 Query: 350 LXEFAQKLEXACVXTVESGKMTKDLALLVHGSSKVTRSD-YLNTEEFIDAV 201 L FAQ LE CV TVESG MTKDLA +HG S V ++ +LNT +F+D + Sbjct: 391 LIRFAQTLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTSDFLDTI 441
>IDHP_HUMAN (P48735) Isocitrate dehydrogenase [NADP], mitochondrial precursor| (EC 1.1.1.42) (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) (ICD-M) Length = 452 Score = 55.1 bits (131), Expect = 4e-08 Identities = 28/51 (54%), Positives = 35/51 (68%), Gaps = 1/51 (1%) Frame = -1 Query: 350 LXEFAQKLEXACVXTVESGKMTKDLALLVHGSSKVTRSD-YLNTEEFIDAV 201 L FAQ LE CV TVESG MTKDLA +HG S V ++ +LNT +F+D + Sbjct: 391 LIRFAQMLEKVCVETVESGAMTKDLAGCIHGLSNVKLNEHFLNTTDFLDTI 441
>IDH_MYCTU (P65097) Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)| (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) Length = 409 Score = 54.7 bits (130), Expect = 6e-08 Identities = 27/49 (55%), Positives = 35/49 (71%) Frame = -1 Query: 344 EFAQKLEXACVXTVESGKMTKDLALLVHGSSKVTRSDYLNTEEFIDAVA 198 +FA KLE + TVESGKMTKDLA+L+ D+LN+EEF+DA+A Sbjct: 357 DFAHKLESVVIATVESGKMTKDLAILIG-----PEQDWLNSEEFLDAIA 400
>IDH_MYCBO (P65098) Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)| (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) Length = 409 Score = 54.7 bits (130), Expect = 6e-08 Identities = 27/49 (55%), Positives = 35/49 (71%) Frame = -1 Query: 344 EFAQKLEXACVXTVESGKMTKDLALLVHGSSKVTRSDYLNTEEFIDAVA 198 +FA KLE + TVESGKMTKDLA+L+ D+LN+EEF+DA+A Sbjct: 357 DFAHKLESVVIATVESGKMTKDLAILIG-----PEQDWLNSEEFLDAIA 400
>IDHC_HUMAN (O75874) Isocitrate dehydrogenase [NADP] cytoplasmic (EC 1.1.1.42)| (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) Length = 414 Score = 52.0 bits (123), Expect = 4e-07 Identities = 26/48 (54%), Positives = 31/48 (64%) Frame = -1 Query: 350 LXEFAQKLEXACVXTVESGKMTKDLALLVHGSSKVTRSDYLNTEEFID 207 L FA LE + T+E+G MTKDLA + G V RSDYLNT EF+D Sbjct: 352 LAFFANALEEVSIETIEAGFMTKDLAACIKGLPNVQRSDYLNTFEFMD 399
>IDHP_MOUSE (P54071) Isocitrate dehydrogenase [NADP], mitochondrial precursor| (EC 1.1.1.42) (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) (ICD-M) Length = 523 Score = 46.6 bits (109), Expect = 2e-05 Identities = 26/51 (50%), Positives = 33/51 (64%), Gaps = 1/51 (1%) Frame = -1 Query: 350 LXEFAQKLEXACVXTVESGKMTKDLALLVHGSSKVTRSD-YLNTEEFIDAV 201 L FAQ E CV TVE G MTKDLA +HG S V ++ +LNT +F+D + Sbjct: 463 LIRFAQTREKVCVQTVE-GAMTKDLAGCIHGLSNVKLNEHFLNTTDFLDTI 512
>IDHP_SCHPO (O14254) Probable isocitrate dehydrogenase [NADP], mitochondrial| precursor (EC 1.1.1.42) (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) Length = 418 Score = 46.2 bits (108), Expect = 2e-05 Identities = 27/54 (50%), Positives = 34/54 (62%) Frame = -1 Query: 353 RLXEFAQKLEXACVXTVESGKMTKDLALLVHGSSKVTRSDYLNTEEFIDAVAAE 192 RL +FA LE ACV VE G MTKDL LL + + Y++T EF+DAV +E Sbjct: 361 RLVKFANALEHACVRCVEKGIMTKDLYLL-----SKSPNGYVDTFEFLDAVKSE 409
>IDHH_YEAST (P53982) Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)| (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) Length = 420 Score = 46.2 bits (108), Expect = 2e-05 Identities = 27/50 (54%), Positives = 33/50 (66%), Gaps = 1/50 (2%) Frame = -1 Query: 344 EFAQKLEXACVXTVE-SGKMTKDLALLVHGSSKVTRSDYLNTEEFIDAVA 198 +F LE A + TV+ GKMTKDLAL++ K RS Y+ TEEFID VA Sbjct: 354 KFGNLLEKATLDTVQVGGKMTKDLALML---GKTNRSSYVTTEEFIDEVA 400
>IDHC_YEAST (P41939) Isocitrate dehydrogenase [NADP] cytoplasmic (EC 1.1.1.42)| (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) Length = 412 Score = 45.8 bits (107), Expect = 3e-05 Identities = 29/49 (59%), Positives = 33/49 (67%), Gaps = 1/49 (2%) Frame = -1 Query: 344 EFAQKLEXACVXTV-ESGKMTKDLALLVHGSSKVTRSDYLNTEEFIDAV 201 +F Q LE A V TV E G MTKDLAL++ K RS Y+ TEEFIDAV Sbjct: 354 KFGQILESATVNTVQEDGIMTKDLALIL---GKSERSAYVTTEEFIDAV 399
>IDH1_CANTR (O13285) Isocitrate dehydrogenase [NADP], mitochondrial precursor| (EC 1.1.1.42) (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) (CtIDP1) Length = 430 Score = 44.7 bits (104), Expect = 6e-05 Identities = 27/50 (54%), Positives = 33/50 (66%), Gaps = 1/50 (2%) Frame = -1 Query: 344 EFAQKLEXACVXTVESGK-MTKDLALLVHGSSKVTRSDYLNTEEFIDAVA 198 +FA KLE A + TVE + MTKDLAL + K RS Y+ T EF+DAVA Sbjct: 379 DFASKLEQATIDTVEVDRIMTKDLALAM---GKTDRSAYVTTTEFLDAVA 425
>IDH2_CANTR (O13294) Isocitrate dehydrogenase [NADP] peroxisomal (EC 1.1.1.42)| (Oxalosuccinate decarboxylase) (IDH) (PS-NADP-IDH) (CtIDP2) Length = 410 Score = 43.5 bits (101), Expect = 1e-04 Identities = 26/50 (52%), Positives = 31/50 (62%), Gaps = 1/50 (2%) Frame = -1 Query: 344 EFAQKLEXACVXTVESGK-MTKDLALLVHGSSKVTRSDYLNTEEFIDAVA 198 +FA++LE A + TV MTKDLAL K RS Y+ TEEFID VA Sbjct: 355 KFAEELEKAVIETVSKDNIMTKDLALT---QGKTDRSSYVTTEEFIDGVA 401
>IDH_SPHYA (P50215) Isocitrate dehydrogenase [NADP] (EC 1.1.1.42)| (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) Length = 406 Score = 43.1 bits (100), Expect = 2e-04 Identities = 21/48 (43%), Positives = 30/48 (62%) Frame = -1 Query: 344 EFAQKLEXACVXTVESGKMTKDLALLVHGSSKVTRSDYLNTEEFIDAV 201 +FA+ LE C+ TVE G MTKDLALL+ ++ TE+F +A+ Sbjct: 352 KFAETLEQVCIKTVEGGAMTKDLALLIGPDQA-----WMTTEQFFEAI 394
>IDHP_YEAST (P21954) Isocitrate dehydrogenase [NADP], mitochondrial precursor| (EC 1.1.1.42) (Oxalosuccinate decarboxylase) (IDH) (NADP(+)-specific ICDH) (IDP) Length = 428 Score = 40.0 bits (92), Expect = 0.001 Identities = 26/51 (50%), Positives = 32/51 (62%), Gaps = 1/51 (1%) Frame = -1 Query: 350 LXEFAQKLEXACVXTVES-GKMTKDLALLVHGSSKVTRSDYLNTEEFIDAV 201 L +FA LE A + TV+ G MTKDLAL + RS Y+ TEEF+DAV Sbjct: 369 LCKFANILESATLNTVQQDGIMTKDLALACGNNE---RSAYVTTEEFLDAV 416
>IDH3A_RAT (Q99NA5) Isocitrate dehydrogenase [NAD] subunit alpha,| mitochondrial precursor (EC 1.1.1.41) (Isocitric dehydrogenase) (NAD(+)-specific ICDH) Length = 366 Score = 28.9 bits (63), Expect = 3.2 Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Frame = -1 Query: 350 LXEFAQKLEXACVXTVESGK-MTKDLALLVHGSSKVTRSDYLNTEE 216 L + A K+E AC T++ GK +TKDL G+SK SD+ TEE Sbjct: 320 LFDHAAKIEAACFATIKDGKSLTKDLG----GNSKC--SDF--TEE 357
>IDH3A_BOVIN (P41563) Isocitrate dehydrogenase [NAD] subunit alpha,| mitochondrial precursor (EC 1.1.1.41) (Isocitric dehydrogenase) (NAD(+)-specific ICDH) (Isocitrate dehydrogenase subunits 3/4) Length = 366 Score = 28.9 bits (63), Expect = 3.2 Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%) Frame = -1 Query: 350 LXEFAQKLEXACVXTVESGK-MTKDLALLVHGSSKVTRSDYLNTEE 216 L + A K+E AC T++ GK +TKDL G+SK SD+ TEE Sbjct: 320 LFDHAAKIETACFATIKDGKSLTKDLG----GNSKC--SDF--TEE 357
>LEU3_CAMJR (Q5HS77) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 358 Score = 28.5 bits (62), Expect = 4.2 Identities = 17/46 (36%), Positives = 21/46 (45%) Frame = -1 Query: 338 AQKLEXACVXTVESGKMTKDLALLVHGSSKVTRSDYLNTEEFIDAV 201 AQ +E A + GKMTKDL YLNT+E D + Sbjct: 313 AQDIENAISLALAQGKMTKDL----------NAKSYLNTDEMGDCI 348
>LEU3_CAMJE (Q9PLW0) 3-isopropylmalate dehydrogenase (EC 1.1.1.85) (Beta-IPM| dehydrogenase) (IMDH) (3-IPM-DH) Length = 358 Score = 28.5 bits (62), Expect = 4.2 Identities = 17/46 (36%), Positives = 21/46 (45%) Frame = -1 Query: 338 AQKLEXACVXTVESGKMTKDLALLVHGSSKVTRSDYLNTEEFIDAV 201 AQ +E A + GKMTKDL YLNT+E D + Sbjct: 313 AQDIENAISLALAQGKMTKDL----------NAKSYLNTDEMGDCI 348
>IDH3A_MOUSE (Q9D6R2) Isocitrate dehydrogenase [NAD] subunit alpha,| mitochondrial precursor (EC 1.1.1.41) (Isocitric dehydrogenase) (NAD(+)-specific ICDH) Length = 366 Score = 28.1 bits (61), Expect = 5.5 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%) Frame = -1 Query: 350 LXEFAQKLEXACVXTVESGK-MTKDL 276 L + A K+E AC T++ GK +TKDL Sbjct: 320 LFDHAAKIEAACFATIKDGKSLTKDL 345
>ITAD_MOUSE (Q3V0T4) Integrin alpha-D precursor (CD11d antigen)| Length = 1168 Score = 27.3 bits (59), Expect = 9.4 Identities = 9/30 (30%), Positives = 19/30 (63%) Frame = -1 Query: 281 DLALLVHGSSKVTRSDYLNTEEFIDAVAAE 192 D+A L+ GS + +SD+ ++F+ A+ + Sbjct: 159 DIAFLIDGSGSIDQSDFTQMKDFVKALMGQ 188 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 35,498,070 Number of Sequences: 219361 Number of extensions: 477320 Number of successful extensions: 887 Number of sequences better than 10.0: 28 Number of HSP's better than 10.0 without gapping: 867 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 877 length of database: 80,573,946 effective HSP length: 94 effective length of database: 59,954,012 effective search space used: 1438896288 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
