ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27j04 |
|---|---|
| Clone Library Name | barley_pub |
>TULP2_MOUSE (P46686) Tubby-related protein 2 (Tubby-like protein 2) (P4-6| protein) (Fragment) Length = 564 Score = 41.2 bits (95), Expect(3) = 1e-12 Identities = 20/41 (48%), Positives = 28/41 (68%) Frame = -3 Query: 513 ASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKDLFTMDYR 391 ASVKNFQ+V D E D ++LQFG++ ++FTMD+R Sbjct: 508 ASVKNFQIVHPD-------EPDHLVLQFGRVAPNIFTMDFR 541 Score = 36.6 bits (83), Expect(3) = 1e-12 Identities = 15/22 (68%), Positives = 18/22 (81%) Frame = -1 Query: 386 PISAFQSFAICLSSFDTKIACE 321 P+ Q+FAICLSSFD K+ACE Sbjct: 543 PLCPLQAFAICLSSFDGKLACE 564 Score = 33.5 bits (75), Expect(3) = 1e-12 Identities = 13/26 (50%), Positives = 19/26 (73%) Frame = -2 Query: 595 LVLKNKSPRWHEQLQCWCLNFRGRVT 518 L+L+NK+P W ++ + LNF GRVT Sbjct: 481 LLLQNKAPSWSDESGAYVLNFHGRVT 506
>TUB_HUMAN (P50607) Tubby protein homolog| Length = 506 Score = 41.2 bits (95), Expect(3) = 2e-12 Identities = 18/40 (45%), Positives = 28/40 (70%) Frame = -3 Query: 513 ASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKDLFTMDY 394 ASVKNFQ++ +D D +++QFG++ +D+FTMDY Sbjct: 450 ASVKNFQIIHGNDP-------DYIVMQFGRVAEDVFTMDY 482 Score = 36.2 bits (82), Expect(3) = 2e-12 Identities = 15/22 (68%), Positives = 19/22 (86%) Frame = -1 Query: 386 PISAFQSFAICLSSFDTKIACE 321 P+ A Q+FAI LSSFD+K+ACE Sbjct: 485 PLCALQAFAIALSSFDSKLACE 506 Score = 33.5 bits (75), Expect(3) = 2e-12 Identities = 13/24 (54%), Positives = 18/24 (75%) Frame = -2 Query: 589 LKNKSPRWHEQLQCWCLNFRGRVT 518 L+NK+P W++ Q + LNF GRVT Sbjct: 425 LQNKTPVWNDDTQSYVLNFHGRVT 448
>TUB_RAT (O88808) Tubby protein homolog| Length = 505 Score = 41.2 bits (95), Expect(3) = 2e-12 Identities = 18/40 (45%), Positives = 28/40 (70%) Frame = -3 Query: 513 ASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKDLFTMDY 394 ASVKNFQ++ +D D +++QFG++ +D+FTMDY Sbjct: 449 ASVKNFQIIHGNDP-------DYIVMQFGRVAEDVFTMDY 481 Score = 36.2 bits (82), Expect(3) = 2e-12 Identities = 15/22 (68%), Positives = 19/22 (86%) Frame = -1 Query: 386 PISAFQSFAICLSSFDTKIACE 321 P+ A Q+FAI LSSFD+K+ACE Sbjct: 484 PLCALQAFAIALSSFDSKLACE 505 Score = 33.5 bits (75), Expect(3) = 2e-12 Identities = 13/24 (54%), Positives = 18/24 (75%) Frame = -2 Query: 589 LKNKSPRWHEQLQCWCLNFRGRVT 518 L+NK+P W++ Q + LNF GRVT Sbjct: 424 LQNKTPVWNDDTQSYVLNFHGRVT 447
>TUB_MOUSE (P50586) Tubby protein| Length = 505 Score = 41.2 bits (95), Expect(3) = 2e-12 Identities = 18/40 (45%), Positives = 28/40 (70%) Frame = -3 Query: 513 ASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKDLFTMDY 394 ASVKNFQ++ +D D +++QFG++ +D+FTMDY Sbjct: 449 ASVKNFQIIHGNDP-------DYIVMQFGRVAEDVFTMDY 481 Score = 36.2 bits (82), Expect(3) = 2e-12 Identities = 15/22 (68%), Positives = 19/22 (86%) Frame = -1 Query: 386 PISAFQSFAICLSSFDTKIACE 321 P+ A Q+FAI LSSFD+K+ACE Sbjct: 484 PLCALQAFAIALSSFDSKLACE 505 Score = 33.5 bits (75), Expect(3) = 2e-12 Identities = 13/24 (54%), Positives = 18/24 (75%) Frame = -2 Query: 589 LKNKSPRWHEQLQCWCLNFRGRVT 518 L+NK+P W++ Q + LNF GRVT Sbjct: 424 LQNKTPVWNDDTQSYVLNFHGRVT 447
>TULP1_MOUSE (Q9Z273) Tubby-related protein 1 (Tubby-like protein 1)| Length = 543 Score = 44.7 bits (104), Expect(3) = 3e-12 Identities = 21/41 (51%), Positives = 29/41 (70%) Frame = -3 Query: 513 ASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKDLFTMDYR 391 ASVKNFQ+V +DD D ++LQFG++ +D FT+DYR Sbjct: 487 ASVKNFQIVHADDP-------DYIVLQFGRVAEDAFTLDYR 520 Score = 35.0 bits (79), Expect(3) = 3e-12 Identities = 15/22 (68%), Positives = 18/22 (81%) Frame = -1 Query: 386 PISAFQSFAICLSSFDTKIACE 321 P+ A Q+FAI LSSFD K+ACE Sbjct: 522 PLCALQAFAIALSSFDGKLACE 543 Score = 30.4 bits (67), Expect(3) = 3e-12 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = -2 Query: 589 LKNKSPRWHEQLQCWCLNFRGRVT 518 L NK P W+E + LNF+GRVT Sbjct: 462 LHNKPPIWNEDSGSYTLNFQGRVT 485
>TULP3_HUMAN (O75386) Tubby-related protein 3 (Tubby-like protein 3)| Length = 442 Score = 40.4 bits (93), Expect(3) = 4e-12 Identities = 19/40 (47%), Positives = 27/40 (67%) Frame = -3 Query: 513 ASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKDLFTMDY 394 ASVKNFQLV +D D +++QFG++ D+FT+DY Sbjct: 386 ASVKNFQLVHKNDP-------DYIVMQFGRVADDVFTLDY 418 Score = 35.4 bits (80), Expect(3) = 4e-12 Identities = 15/22 (68%), Positives = 19/22 (86%) Frame = -1 Query: 386 PISAFQSFAICLSSFDTKIACE 321 P+ A Q+FAI LSSFD+K+ACE Sbjct: 421 PLCAVQAFAISLSSFDSKLACE 442 Score = 33.9 bits (76), Expect(3) = 4e-12 Identities = 14/24 (58%), Positives = 17/24 (70%) Frame = -2 Query: 589 LKNKSPRWHEQLQCWCLNFRGRVT 518 L NK+P W+ Q + LNFRGRVT Sbjct: 361 LHNKAPVWNSDTQSYVLNFRGRVT 384
>TULP1_HUMAN (O00294) Tubby-related protein 1 (Tubby-like protein 1)| Length = 542 Score = 44.7 bits (104), Expect(3) = 6e-12 Identities = 21/41 (51%), Positives = 29/41 (70%) Frame = -3 Query: 513 ASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKDLFTMDYR 391 ASVKNFQ+V +DD D ++LQFG++ +D FT+DYR Sbjct: 486 ASVKNFQIVHADDP-------DYIVLQFGRVAEDAFTLDYR 519 Score = 35.0 bits (79), Expect(3) = 6e-12 Identities = 15/22 (68%), Positives = 18/22 (81%) Frame = -1 Query: 386 PISAFQSFAICLSSFDTKIACE 321 P+ A Q+FAI LSSFD K+ACE Sbjct: 521 PLCALQAFAIALSSFDGKLACE 542 Score = 29.3 bits (64), Expect(3) = 6e-12 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = -2 Query: 589 LKNKSPRWHEQLQCWCLNFRGRVT 518 L NK P W++ + LNF+GRVT Sbjct: 461 LHNKPPVWNDDSGSYTLNFQGRVT 484
>TULP3_MOUSE (O88413) Tubby-related protein 3 (Tubby-like protein 3)| Length = 460 Score = 39.7 bits (91), Expect(3) = 2e-11 Identities = 18/40 (45%), Positives = 27/40 (67%) Frame = -3 Query: 513 ASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKDLFTMDY 394 ASVKNFQ+V +D D +++QFG++ D+FT+DY Sbjct: 404 ASVKNFQIVHGNDP-------DYIVMQFGRVADDVFTLDY 436 Score = 35.0 bits (79), Expect(3) = 2e-11 Identities = 15/22 (68%), Positives = 19/22 (86%) Frame = -1 Query: 386 PISAFQSFAICLSSFDTKIACE 321 P+ A Q+FAI LSSFD+K+ACE Sbjct: 439 PLCALQAFAIGLSSFDSKLACE 460 Score = 32.7 bits (73), Expect(3) = 2e-11 Identities = 13/24 (54%), Positives = 17/24 (70%) Frame = -2 Query: 589 LKNKSPRWHEQLQCWCLNFRGRVT 518 L NK+P W++ Q + LNF GRVT Sbjct: 379 LHNKAPVWNDDTQSYVLNFHGRVT 402
>TUB1_CAEEL (Q09306) Tubby protein homolog 1| Length = 426 Score = 37.7 bits (86), Expect(3) = 2e-10 Identities = 14/25 (56%), Positives = 20/25 (80%) Frame = -2 Query: 592 VLKNKSPRWHEQLQCWCLNFRGRVT 518 +L NKSP+W+++ Q + LNF GRVT Sbjct: 344 ILSNKSPQWNDETQSYVLNFHGRVT 368 Score = 35.8 bits (81), Expect(3) = 2e-10 Identities = 19/41 (46%), Positives = 27/41 (65%) Frame = -3 Query: 513 ASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKDLFTMDYR 391 ASVKNFQ++ S E+ +++QFG+I D FTMD+R Sbjct: 370 ASVKNFQIIHQS-----SPEY--IVMQFGRISDDEFTMDFR 403 Score = 30.4 bits (67), Expect(3) = 2e-10 Identities = 12/22 (54%), Positives = 17/22 (77%) Frame = -1 Query: 386 PISAFQSFAICLSSFDTKIACE 321 P+SA Q+F I ++SF K+ACE Sbjct: 405 PLSAVQAFGIAMTSFHGKLACE 426
>TULP2_HUMAN (O00295) Tubby-related protein 2 (Tubby-like protein 2)| Length = 520 Score = 42.0 bits (97), Expect(3) = 4e-09 Identities = 22/40 (55%), Positives = 28/40 (70%) Frame = -3 Query: 513 ASVKNFQLVASDDNGPVSQEHDKVILQFGKIGKDLFTMDY 394 ASVKNFQ+V P QEH ++LQFG++G D FTMD+ Sbjct: 470 ASVKNFQIV-----DPKHQEH--LVLQFGRVGPDTFTMDF 502 Score = 31.6 bits (70), Expect(3) = 4e-09 Identities = 13/26 (50%), Positives = 18/26 (69%) Frame = -2 Query: 595 LVLKNKSPRWHEQLQCWCLNFRGRVT 518 L+L NK+P W ++ + LNF GRVT Sbjct: 443 LLLHNKTPSWDKENGVYTLNFHGRVT 468 Score = 25.8 bits (55), Expect(3) = 4e-09 Identities = 10/16 (62%), Positives = 13/16 (81%) Frame = -1 Query: 386 PISAFQSFAICLSSFD 339 P S Q+F+ICLSSF+ Sbjct: 505 PFSPLQAFSICLSSFN 520
>TULP4_HUMAN (Q9NRJ4) Tubby-like protein 4 (Tubby superfamily protein)| Length = 1544 Score = 30.8 bits (68), Expect = 3.1 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = -2 Query: 592 VLKNKSPRWHEQLQCWCLNFRGRVT 518 V+ NK P W+E Q + L+F GRVT Sbjct: 1467 VMANKQPLWNEATQVYQLDFGGRVT 1491
>TULP4_MOUSE (Q9JIL5) Tubby-like protein 4 (Tubby superfamily protein)| Length = 1547 Score = 30.8 bits (68), Expect = 3.1 Identities = 13/25 (52%), Positives = 17/25 (68%) Frame = -2 Query: 592 VLKNKSPRWHEQLQCWCLNFRGRVT 518 V+ NK P W+E Q + L+F GRVT Sbjct: 1470 VMANKQPLWNEATQVYQLDFGGRVT 1494
>ESP1_YEAST (Q03018) Separin (EC 3.4.22.49) (Separase)| Length = 1630 Score = 29.6 bits (65), Expect = 6.9 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +3 Query: 252 NTCDSVFLPPSSSCHHFPQHLVSFTSNLGIKTA*TY 359 N+ FL SSSCH FP +SF +L I +Y Sbjct: 1387 NSIFHTFLVVSSSCHLFPWECLSFLKDLSITRVPSY 1422
>YB8B_YEAST (P38355) Protein YBR287W| Length = 427 Score = 29.6 bits (65), Expect = 6.9 Identities = 14/44 (31%), Positives = 27/44 (61%) Frame = +1 Query: 229 KLQATVYPILVIPFFSPLLPAAIIFPSTLFHSQAILVSKLLRHI 360 +L + P++++ S L P+A +FP T+ HS+ ++ S + R I Sbjct: 294 QLGSVSIPLILVVLGSNLYPSAEVFPKTVHHSKLLIGSIIGRMI 337
>POLG_EC22H (Q66578) Genome polyprotein [Contains: Coat protein VP0 (P1AB);| Coat protein VP3 (P1C); Coat protein VP1 (P1D); Picornain 2A (EC 3.4.22.29) (Core protein P2A); Core protein P2B; Core protein P2C; Core protein P3A; Genome-linked protein VPg (P3 Length = 2180 Score = 29.6 bits (65), Expect = 6.9 Identities = 12/37 (32%), Positives = 20/37 (54%) Frame = -3 Query: 492 LVASDDNGPVSQEHDKVILQFGKIGKDLFTMDYRLXD 382 L ++ D+GP+ QE L F + D+FT+ + D Sbjct: 575 LTSAQDDGPLGQEKPNYFLNFRSMNVDIFTVSHTKVD 611 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 85,780,173 Number of Sequences: 219361 Number of extensions: 1678873 Number of successful extensions: 4023 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 3902 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4015 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5253413348 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
