ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27j02 |
|---|---|
| Clone Library Name | barley_pub |
>VP75_SHV21 (P11282) Probable membrane antigen 75 (Tegument protein)| Length = 1299 Score = 31.6 bits (70), Expect = 2.4 Identities = 14/48 (29%), Positives = 23/48 (47%) Frame = -1 Query: 636 PNLDYRPIRNDAWSQRMRDKYGVDSFDPNRFQQATISPAEQRNRCTIL 493 P +DY P+ D+ + + + S+ PN Q+ T S E + C L Sbjct: 100 PQIDYNPLTLDSLDHNLGQRAVIFSYGPNLHQRLTTSALELQRACKTL 147
>LYAM1_PONPY (Q95235) L-selectin precursor (Lymph node homing receptor)| (Leukocyte adhesion molecule 1) (LAM-1) (Leukocyte-endothelial cell adhesion molecule 1) (LECAM1) (CD62L antigen) Length = 372 Score = 31.6 bits (70), Expect = 2.4 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -2 Query: 530 YLPQNKETDAQSSDACNPLKLGRCNSVLVSEFTASCATWT 411 Y+ +NK+ + DAC+ LK C +TASC W+ Sbjct: 132 YIKRNKDAGKWNDDACHKLKAALC-------YTASCQPWS 164
>LYAM1_PANTR (Q95237) L-selectin precursor (Lymph node homing receptor)| (Leukocyte adhesion molecule 1) (LAM-1) (Leukocyte-endothelial cell adhesion molecule 1) (LECAM1) (CD62L antigen) Length = 372 Score = 31.6 bits (70), Expect = 2.4 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -2 Query: 530 YLPQNKETDAQSSDACNPLKLGRCNSVLVSEFTASCATWT 411 Y+ +NK+ + DAC+ LK C +TASC W+ Sbjct: 132 YIKRNKDAGKWNDDACHKLKAALC-------YTASCQPWS 164
>LYAM1_HUMAN (P14151) L-selectin precursor (Lymph node homing receptor)| (Leukocyte adhesion molecule 1) (LAM-1) (Leukocyte surface antigen Leu-8) (TQ1) (gp90-MEL) (Leukocyte-endothelial cell adhesion molecule 1) (LECAM1) (CD62L antigen) Length = 372 Score = 31.6 bits (70), Expect = 2.4 Identities = 14/40 (35%), Positives = 21/40 (52%) Frame = -2 Query: 530 YLPQNKETDAQSSDACNPLKLGRCNSVLVSEFTASCATWT 411 Y+ +NK+ + DAC+ LK C +TASC W+ Sbjct: 132 YIKRNKDAGKWNDDACHKLKAALC-------YTASCQPWS 164
>RBL1_MOUSE (Q64701) Retinoblastoma-like protein 1 (107 kDa| retinoblastoma-associated protein) (PRB1) (P107) Length = 1063 Score = 30.4 bits (67), Expect = 5.3 Identities = 34/130 (26%), Positives = 49/130 (37%), Gaps = 10/130 (7%) Frame = +1 Query: 208 EVPYKVPWERVHNRMSCMAKIKFNYCKDSTMQRFQTM*MKELRRANARARHIQHNMEISD 387 E P K+P R R+ C K FN+C + R I ++ S Sbjct: 152 EEPPKLPRSRKQRRIPCSVKDLFNFCWTLFVY------------TKGNFRMIGDDLVNSY 199 Query: 388 HPATCYMRVHVAQLAVNSETSTELHRPSFRGL----------QASEDCASVSLFCGRYRG 537 H C + + A A+ +L PSF+GL A E +++ C + G Sbjct: 200 HLLLCCLDLIFAN-AIMCPNRRDLLNPSFKGLPSDFHAPDFKAAEEPPCIIAVLCDLHDG 258 Query: 538 LLKPVWIKGI 567 LL V KGI Sbjct: 259 LL--VEAKGI 266
>SRK2_SPOLA (P42688) Tyrosine-protein kinase SRK2 (EC 2.7.10.2) (Fragment)| Length = 362 Score = 30.4 bits (67), Expect = 5.3 Identities = 13/31 (41%), Positives = 20/31 (64%) Frame = -3 Query: 121 LARMCLFGRLRHPKLLRLYGLSRAGIPNHVI 29 LA + +LRHPKL++LY + G P ++I Sbjct: 136 LAEAQIMKKLRHPKLIQLYAVCTQGEPVYII 166
>YZ2R_AGRVI (P70795) Hypothetical 52.8 kDa protein in TAR-I ttuC' 3'region| (ORFZ2) Length = 502 Score = 30.0 bits (66), Expect = 7.0 Identities = 11/21 (52%), Positives = 17/21 (80%) Frame = -3 Query: 442 LNSQPAVQHGLACSMWLGDLI 380 +NSQPA+ G+ SMW+G+L+ Sbjct: 349 INSQPALFWGIIASMWIGNLL 369
>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)| Length = 5179 Score = 30.0 bits (66), Expect = 7.0 Identities = 11/31 (35%), Positives = 17/31 (54%) Frame = +3 Query: 495 GLCICFFVLREISWPVETCLDQRNPPHTCPS 587 GLC + + WP++ C+ +PP T PS Sbjct: 1377 GLCYDYKIRVNCCWPMDKCITTPSPPTTTPS 1407
>LYAM1_BOVIN (P98131) L-selectin precursor (Lymph node homing receptor)| (Leukocyte adhesion molecule 1) (LAM-1) (Leukocyte-endothelial cell adhesion molecule 1) (LECAM1) (CD62L antigen) Length = 370 Score = 30.0 bits (66), Expect = 7.0 Identities = 13/40 (32%), Positives = 21/40 (52%) Frame = -2 Query: 530 YLPQNKETDAQSSDACNPLKLGRCNSVLVSEFTASCATWT 411 Y+ +NK++ + DAC+ K C +TASC W+ Sbjct: 132 YIKRNKDSGKWNDDACHKAKTALC-------YTASCKPWS 164
>CT194_HUMAN (Q5TEA3) Protein C20orf194| Length = 1177 Score = 30.0 bits (66), Expect = 7.0 Identities = 12/27 (44%), Positives = 19/27 (70%) Frame = +2 Query: 167 QTRFIAQCKSVHRSKFHTRFHGNVYTI 247 +TRF+A+CK++ S + F GN+Y I Sbjct: 985 KTRFVAKCKAIQSSIKPSPFSGNIYHI 1011
>XLRS1_FUGRU (Q9W6R5) Retinoschisin precursor (X-linked juvenile retinoschisis| protein homolog) Length = 280 Score = 29.6 bits (65), Expect = 9.1 Identities = 12/43 (27%), Positives = 24/43 (55%) Frame = +3 Query: 291 LYDAEISDYVNERTTTGECKGSPHPTQHGNIRSPSHMLHASPC 419 L++ +S+ N ++ +C+G PT+ +IR+ S M+ C Sbjct: 73 LFELGVSETWNSKSCKCDCEGGESPTEFPSIRTGSSMVRGVDC 115
>TILS_GEOSL (Q74C65) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)| (tRNA(Ile)-lysidine synthetase) (tRNA(Ile)-2-lysyl-cytidine synthase) Length = 471 Score = 29.6 bits (65), Expect = 9.1 Identities = 15/53 (28%), Positives = 27/53 (50%) Frame = +1 Query: 37 GLGFQPDSNHTDVTVLDGANGQTNTS*LKHNTLPCVGEINPRGSNALHCTMQI 195 GL F+ D ++TDV L ++H +P +G +NP ++ L T ++ Sbjct: 189 GLAFRQDQSNTDVAFLRNR--------IRHELVPYLGRLNPGAASRLARTAEL 233 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 113,700,394 Number of Sequences: 219361 Number of extensions: 2525697 Number of successful extensions: 6428 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 6158 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6426 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6882837918 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
