Clone Name | rbasd27i23 |
---|---|
Clone Library Name | barley_pub |
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 170 bits (86), Expect = 4e-39 Identities = 239/290 (82%) Strand = Plus / Minus Query: 353 tggaagaaggtaggtagcacaaaggagagcagcgcacagactgtgcatccaacaaaggag 412 ||||||| ||||| ||||| |||||||||||||| || || |||| || ||||||||| Sbjct: 7344789 tggaagatcgtaggcagcacgaaggagagcagcgcgcaaaccgtgctcccgacaaaggag 7344730 Query: 413 acgaaggacccaaatgcaggtatgaaggatgccatcacagttaaaatagtaaccatgatg 472 | ||||||||| || ||||||||||||||||||| ||||| | ||||| ||||||| | Sbjct: 7344729 atgaaggacccgaacgcaggtatgaaggatgccaccacagacaggatagttaccatgacg 7344670 Query: 473 atgcggctcgagtgcaggcctagccattcggcgccaggaacaccgtgggaaagcttctgg 532 |||||||| ||||||||||| | |||||| || || |||| ||| || |||||| || Sbjct: 7344669 atgcggcttgagtgcaggcccacccattcagccccgcgaaccttgtgcgagagcttcggg 7344610 Query: 533 aagcatccacttgatctgaacctcgcctccacaatctcatggatcgggtgcatcataact 592 || |||||||||||| ||| || |||| |||||||| ||||| ||||||||||| ||| Sbjct: 7344609 aaacatccacttgattggaatctttcctcgacaatctcgtggattgggtgcatcatgact 7344550 Query: 593 gggaatgtgaatgctagtgcaatgcataggccaacctgccagtagatttt 642 || ||||||||| | ||||| ||||| || |||||||| ||| ||||||| Sbjct: 7344549 ggaaatgtgaataccagtgctatgcaaagaccaacctgtcagcagatttt 7344500 Score = 48.1 bits (24), Expect = 0.042 Identities = 33/36 (91%) Strand = Plus / Minus Query: 272 gcaaaacccaggccaaagagaaggaagccgtagtcc 307 |||||||| ||||| ||||||||||| ||||||||| Sbjct: 7344870 gcaaaaccaaggccgaagagaaggaaaccgtagtcc 7344835
>dbj|AP005774.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0086N05 Length = 163670 Score = 170 bits (86), Expect = 4e-39 Identities = 239/290 (82%) Strand = Plus / Minus Query: 353 tggaagaaggtaggtagcacaaaggagagcagcgcacagactgtgcatccaacaaaggag 412 ||||||| ||||| ||||| |||||||||||||| || || |||| || ||||||||| Sbjct: 71470 tggaagatcgtaggcagcacgaaggagagcagcgcgcaaaccgtgctcccgacaaaggag 71411 Query: 413 acgaaggacccaaatgcaggtatgaaggatgccatcacagttaaaatagtaaccatgatg 472 | ||||||||| || ||||||||||||||||||| ||||| | ||||| ||||||| | Sbjct: 71410 atgaaggacccgaacgcaggtatgaaggatgccaccacagacaggatagttaccatgacg 71351 Query: 473 atgcggctcgagtgcaggcctagccattcggcgccaggaacaccgtgggaaagcttctgg 532 |||||||| ||||||||||| | |||||| || || |||| ||| || |||||| || Sbjct: 71350 atgcggcttgagtgcaggcccacccattcagccccgcgaaccttgtgcgagagcttcggg 71291 Query: 533 aagcatccacttgatctgaacctcgcctccacaatctcatggatcgggtgcatcataact 592 || |||||||||||| ||| || |||| |||||||| ||||| ||||||||||| ||| Sbjct: 71290 aaacatccacttgattggaatctttcctcgacaatctcgtggattgggtgcatcatgact 71231 Query: 593 gggaatgtgaatgctagtgcaatgcataggccaacctgccagtagatttt 642 || ||||||||| | ||||| ||||| || |||||||| ||| ||||||| Sbjct: 71230 ggaaatgtgaataccagtgctatgcaaagaccaacctgtcagcagatttt 71181 Score = 48.1 bits (24), Expect = 0.042 Identities = 33/36 (91%) Strand = Plus / Minus Query: 272 gcaaaacccaggccaaagagaaggaagccgtagtcc 307 |||||||| ||||| ||||||||||| ||||||||| Sbjct: 71551 gcaaaaccaaggccgaagagaaggaaaccgtagtcc 71516
>ref|XM_477191.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1275 Score = 161 bits (81), Expect = 4e-36 Identities = 228/277 (82%) Strand = Plus / Minus Query: 353 tggaagaaggtaggtagcacaaaggagagcagcgcacagactgtgcatccaacaaaggag 412 ||||||| ||||| ||||| |||||||||||||| || || |||| || ||||||||| Sbjct: 1157 tggaagatcgtaggcagcacgaaggagagcagcgcgcaaaccgtgctcccgacaaaggag 1098 Query: 413 acgaaggacccaaatgcaggtatgaaggatgccatcacagttaaaatagtaaccatgatg 472 | ||||||||| || ||||||||||||||||||| ||||| | ||||| ||||||| | Sbjct: 1097 atgaaggacccgaacgcaggtatgaaggatgccaccacagacaggatagttaccatgacg 1038 Query: 473 atgcggctcgagtgcaggcctagccattcggcgccaggaacaccgtgggaaagcttctgg 532 |||||||| ||||||||||| | |||||| || || |||| ||| || |||||| || Sbjct: 1037 atgcggcttgagtgcaggcccacccattcagccccgcgaaccttgtgcgagagcttcggg 978 Query: 533 aagcatccacttgatctgaacctcgcctccacaatctcatggatcgggtgcatcataact 592 || |||||||||||| ||| || |||| |||||||| ||||| ||||||||||| ||| Sbjct: 977 aaacatccacttgattggaatctttcctcgacaatctcgtggattgggtgcatcatgact 918 Query: 593 gggaatgtgaatgctagtgcaatgcataggccaacct 629 || ||||||||| | ||||| ||||| || ||||||| Sbjct: 917 ggaaatgtgaataccagtgctatgcaaagaccaacct 881 Score = 48.1 bits (24), Expect = 0.042 Identities = 33/36 (91%) Strand = Plus / Minus Query: 272 gcaaaacccaggccaaagagaaggaagccgtagtcc 307 |||||||| ||||| ||||||||||| ||||||||| Sbjct: 1238 gcaaaaccaaggccgaagagaaggaaaccgtagtcc 1203
>dbj|AK105808.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-B09, full insert sequence Length = 1381 Score = 161 bits (81), Expect = 4e-36 Identities = 228/277 (82%) Strand = Plus / Minus Query: 353 tggaagaaggtaggtagcacaaaggagagcagcgcacagactgtgcatccaacaaaggag 412 ||||||| ||||| ||||| |||||||||||||| || || |||| || ||||||||| Sbjct: 1012 tggaagatcgtaggcagcacgaaggagagcagcgcgcaaaccgtgctcccgacaaaggag 953 Query: 413 acgaaggacccaaatgcaggtatgaaggatgccatcacagttaaaatagtaaccatgatg 472 | ||||||||| || ||||||||||||||||||| ||||| | ||||| ||||||| | Sbjct: 952 atgaaggacccgaacgcaggtatgaaggatgccaccacagacaggatagttaccatgacg 893 Query: 473 atgcggctcgagtgcaggcctagccattcggcgccaggaacaccgtgggaaagcttctgg 532 |||||||| ||||||||||| | |||||| || || |||| ||| || |||||| || Sbjct: 892 atgcggcttgagtgcaggcccacccattcagccccgcgaaccttgtgcgagagcttcggg 833 Query: 533 aagcatccacttgatctgaacctcgcctccacaatctcatggatcgggtgcatcataact 592 || |||||||||||| ||| || |||| |||||||| ||||| ||||||||||| ||| Sbjct: 832 aaacatccacttgattggaatctttcctcgacaatctcgtggattgggtgcatcatgact 773 Query: 593 gggaatgtgaatgctagtgcaatgcataggccaacct 629 || ||||||||| | ||||| ||||| || ||||||| Sbjct: 772 ggaaatgtgaataccagtgctatgcaaagaccaacct 736 Score = 48.1 bits (24), Expect = 0.042 Identities = 33/36 (91%) Strand = Plus / Minus Query: 272 gcaaaacccaggccaaagagaaggaagccgtagtcc 307 |||||||| ||||| ||||||||||| ||||||||| Sbjct: 1093 gcaaaaccaaggccgaagagaaggaaaccgtagtcc 1058
>gb|AY105589.1| Zea mays PCO140163 mRNA sequence Length = 670 Score = 105 bits (53), Expect = 2e-19 Identities = 77/85 (90%) Strand = Plus / Minus Query: 545 gatctgaacctcgcctccacaatctcatggatcgggtgcatcataactgggaatgtgaat 604 ||||||||||| | ||| || ||||||||||||||||||||||| |||||||| |||||| Sbjct: 90 gatctgaaccttgtctcgacgatctcatggatcgggtgcatcatcactgggaaggtgaat 31 Query: 605 gctagtgcaatgcataggccaacct 629 || ||||| |||||||||||||||| Sbjct: 30 gccagtgcgatgcataggccaacct 6 Score = 73.8 bits (37), Expect = 7e-10 Identities = 115/141 (81%) Strand = Plus / Minus Query: 247 gagagcagtgaatattccataaccagcaaaacccaggccaaagagaaggaagccgtagtc 306 ||||||||||| | ||||| ||||| ||| |||| ||||||||||||| ||||||||| Sbjct: 388 gagagcagtgacaagaccatatccagcgaaagccagaccaaagagaaggatgccgtagtc 329 Query: 307 cagcactcttctccatatgctcattgacgatcctacaatgttgaggtggaagaaggtagg 366 |||||| | ||||| | | |||||||| ||||||||| |||| ||||||| | || Sbjct: 328 cagcacccgcctccacaagggtattgacgagcctacaatgctgagatggaagagagacgg 269 Query: 367 tagcacaaaggagagcagcgc 387 |||||||||||||| ||||| Sbjct: 268 cagcacaaaggagagaagcgc 248
>ref|XM_470106.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1283 Score = 54.0 bits (27), Expect = 7e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 556 cgcctccacaatctcatggatcgggtgcatcataactgggaatgtga 602 ||||||||| ||||| ||||||||||||||||| || ||||| |||| Sbjct: 983 cgcctccacgatctcgtggatcgggtgcatcatcaccgggaacgtga 937
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 54.0 bits (27), Expect = 7e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 556 cgcctccacaatctcatggatcgggtgcatcataactgggaatgtga 602 ||||||||| ||||| ||||||||||||||||| || ||||| |||| Sbjct: 33968662 cgcctccacgatctcgtggatcgggtgcatcatcaccgggaacgtga 33968616
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 54.0 bits (27), Expect = 7e-04 Identities = 42/47 (89%) Strand = Plus / Minus Query: 556 cgcctccacaatctcatggatcgggtgcatcataactgggaatgtga 602 ||||||||| ||||| ||||||||||||||||| || ||||| |||| Sbjct: 34059134 cgcctccacgatctcgtggatcgggtgcatcatcaccgggaacgtga 34059088
>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete sequence Length = 172337 Score = 54.0 bits (27), Expect = 7e-04 Identities = 42/47 (89%) Strand = Plus / Plus Query: 556 cgcctccacaatctcatggatcgggtgcatcataactgggaatgtga 602 ||||||||| ||||| ||||||||||||||||| || ||||| |||| Sbjct: 89029 cgcctccacgatctcgtggatcgggtgcatcatcaccgggaacgtga 89075
>gb|AC113352.2| Homo sapiens chromosome 5 clone CTD-2613O8, complete sequence Length = 133668 Score = 46.1 bits (23), Expect = 0.17 Identities = 23/23 (100%) Strand = Plus / Minus Query: 388 acagactgtgcatccaacaaagg 410 ||||||||||||||||||||||| Sbjct: 95805 acagactgtgcatccaacaaagg 95783
>gb|AC139214.12| Mus musculus chromosome 17, clone RP23-345D6, complete sequence Length = 286283 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Minus Query: 242 gacgggagagcagtgaatattc 263 |||||||||||||||||||||| Sbjct: 131413 gacgggagagcagtgaatattc 131392
>emb|AL359885.19| Human DNA sequence from clone RP11-346E8 on chromosome Xq21.1-21.31 Contains a novel pseudogene, complete sequence Length = 76797 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Minus Query: 389 cagactgtgcatccaacaaagg 410 |||||||||||||||||||||| Sbjct: 45683 cagactgtgcatccaacaaagg 45662
>gb|AC093661.4| Homo sapiens BAC clone RP11-472K22 from 4, complete sequence Length = 152381 Score = 44.1 bits (22), Expect = 0.66 Identities = 22/22 (100%) Strand = Plus / Minus Query: 388 acagactgtgcatccaacaaag 409 |||||||||||||||||||||| Sbjct: 65719 acagactgtgcatccaacaaag 65698
>gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete genome Length = 1308759 Score = 44.1 bits (22), Expect = 0.66 Identities = 28/30 (93%) Strand = Plus / Minus Query: 696 caatgaattttacaatttttcaaatctcac 725 ||||||||||||| ||||||||||| |||| Sbjct: 679027 caatgaattttactatttttcaaatatcac 678998
>dbj|AK121940.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107D18, full insert sequence Length = 1515 Score = 44.1 bits (22), Expect = 0.66 Identities = 40/46 (86%) Strand = Plus / Minus Query: 557 gcctccacaatctcatggatcgggtgcatcataactgggaatgtga 602 |||| ||| ||||| ||||||||||||||||| || ||||| |||| Sbjct: 995 gccttcacgatctcgtggatcgggtgcatcatcaccgggaacgtga 950
>gb|AC161276.2| Pan troglodytes BAC clone CH251-520C21 from chromosome 7, complete sequence Length = 210088 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 387 cacagactgtgcatccaacaaagga 411 |||| |||||||||||||||||||| Sbjct: 54754 cacaaactgtgcatccaacaaagga 54730
>gb|AC002127.1| Homo sapiens BAC clone CTA-305H12 from 7, complete sequence Length = 144165 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 387 cacagactgtgcatccaacaaagga 411 |||| |||||||||||||||||||| Sbjct: 44205 cacaaactgtgcatccaacaaagga 44229
>emb|AL357512.15| Human DNA sequence from clone RP11-541J2 on chromosome 1 Contains a nicotinamide nucleotide adenylyltransferase 1 (NMNAT1) pseudogene and a high-mobility group box 3 (HMGB3) pseudogene, complete sequence Length = 184024 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 387 cacagactgtgcatccaacaaagga 411 |||| |||||||||||||||||||| Sbjct: 169805 cacaaactgtgcatccaacaaagga 169781
>emb|AL078581.11|HSDJ12G14 Human DNA sequence from clone RP1-12G14 on chromosome 6q24.1-25.2 Contains the 5' end of the PPIL4 gene for peptidylprolyl isomerase (cyclophilin)-like 4 (HDCME13P ), a novel gene (LOC116254), a ribosomal protein S18 (RPS18) pseudogene, the KATNA1 gene for katanin p60 (ATPase-containing) subunit A 1, three novel genes and two CpG islands, complete sequence Length = 102019 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 387 cacagactgtgcatccaacaaagga 411 |||| |||||||||||||||||||| Sbjct: 32167 cacaaactgtgcatccaacaaagga 32191
>gb|AC091944.2| Homo sapiens chromosome 5 clone RP11-348M17, complete sequence Length = 194624 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 387 cacagactgtgcatccaacaaagga 411 |||| |||||||||||||||||||| Sbjct: 148902 cacaaactgtgcatccaacaaagga 148926
>gb|AC079950.23| Homo sapiens 12q BAC RP11-575A21 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 135123 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 387 cacagactgtgcatccaacaaagga 411 |||| |||||||||||||||||||| Sbjct: 130961 cacaaactgtgcatccaacaaagga 130937
>gb|AC011413.3| Homo sapiens chromosome 5 clone CTB-82M23, complete sequence Length = 136365 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 305 tccagcactcttctccatatg 325 ||||||||||||||||||||| Sbjct: 34801 tccagcactcttctccatatg 34781
>gb|AC011347.6| Homo sapiens chromosome 5 clone CTC-295J22, complete sequence Length = 163167 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 305 tccagcactcttctccatatg 325 ||||||||||||||||||||| Sbjct: 135670 tccagcactcttctccatatg 135650
>gb|AC097648.2| Homo sapiens BAC clone RP11-63H19 from 4, complete sequence Length = 170289 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 387 cacagactgtgcatccaacaaagga 411 |||| |||||||||||||||||||| Sbjct: 123235 cacaaactgtgcatccaacaaagga 123259
>emb|BX640542.3| Human DNA sequence from clone RP13-109G9 on chromosome 1, complete sequence Length = 157207 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 305 tccagcactcttctccatatg 325 ||||||||||||||||||||| Sbjct: 142024 tccagcactcttctccatatg 142004
>dbj|BS000179.1| Pan troglodytes chromosome 22 clone:RP43-082J09, map 22, complete sequences Length = 184352 Score = 42.1 bits (21), Expect = 2.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 212 acattttgtcattaattcatc 232 ||||||||||||||||||||| Sbjct: 149337 acattttgtcattaattcatc 149357
>dbj|AP002791.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-843F11, complete sequences Length = 172914 Score = 42.1 bits (21), Expect = 2.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 387 cacagactgtgcatccaacaaagga 411 |||| |||||||||||||||||||| Sbjct: 72818 cacaaactgtgcatccaacaaagga 72842 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 7,096,270 Number of Sequences: 3902068 Number of extensions: 7096270 Number of successful extensions: 132113 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 27 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 131917 Number of HSP's gapped (non-prelim): 191 length of query: 753 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 730 effective length of database: 17,143,297,704 effective search space: 12514607323920 effective search space used: 12514607323920 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 21 (42.1 bits)