ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27i23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 170 4e-39
2dbj|AP005774.5| Oryza sativa (japonica cultivar-group) genomic D... 170 4e-39
3ref|XM_477191.1| Oryza sativa (japonica cultivar-group), mRNA 161 4e-36
4dbj|AK105808.1| Oryza sativa (japonica cultivar-group) cDNA clon... 161 4e-36
5gb|AY105589.1| Zea mays PCO140163 mRNA sequence 105 2e-19
6ref|XM_470106.1| Oryza sativa (japonica cultivar-group), mRNA 54 7e-04
7gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 54 7e-04
8dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 54 7e-04
9gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genom... 54 7e-04
10gb|AC113352.2| Homo sapiens chromosome 5 clone CTD-2613O8, compl... 46 0.17
11gb|AC139214.12| Mus musculus chromosome 17, clone RP23-345D6, co... 44 0.66
12emb|AL359885.19| Human DNA sequence from clone RP11-346E8 on chr... 44 0.66
13gb|AC093661.4| Homo sapiens BAC clone RP11-472K22 from 4, comple... 44 0.66
14gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete... 44 0.66
15dbj|AK121940.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.66
16gb|AC161276.2| Pan troglodytes BAC clone CH251-520C21 from chrom... 42 2.6
17gb|AC002127.1| Homo sapiens BAC clone CTA-305H12 from 7, complet... 42 2.6
18emb|AL357512.15| Human DNA sequence from clone RP11-541J2 on chr... 42 2.6
19emb|AL078581.11|HSDJ12G14 Human DNA sequence from clone RP1-12G1... 42 2.6
20gb|AC091944.2| Homo sapiens chromosome 5 clone RP11-348M17, comp... 42 2.6
21gb|AC079950.23| Homo sapiens 12q BAC RP11-575A21 (Roswell Park C... 42 2.6
22gb|AC011413.3| Homo sapiens chromosome 5 clone CTB-82M23, comple... 42 2.6
23gb|AC011347.6| Homo sapiens chromosome 5 clone CTC-295J22, compl... 42 2.6
24gb|AC097648.2| Homo sapiens BAC clone RP11-63H19 from 4, complet... 42 2.6
25emb|BX640542.3| Human DNA sequence from clone RP13-109G9 on chro... 42 2.6
26dbj|BS000179.1| Pan troglodytes chromosome 22 clone:RP43-082J09,... 42 2.6
27dbj|AP002791.3| Homo sapiens genomic DNA, chromosome 11q clone:R... 42 2.6 
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score =  170 bits (86), Expect = 4e-39
 Identities = 239/290 (82%)
 Strand = Plus / Minus

                                                                           
Query: 353     tggaagaaggtaggtagcacaaaggagagcagcgcacagactgtgcatccaacaaaggag 412
               |||||||  ||||| ||||| |||||||||||||| || || ||||  || |||||||||
Sbjct: 7344789 tggaagatcgtaggcagcacgaaggagagcagcgcgcaaaccgtgctcccgacaaaggag 7344730

                                                                           
Query: 413     acgaaggacccaaatgcaggtatgaaggatgccatcacagttaaaatagtaaccatgatg 472
               | ||||||||| || ||||||||||||||||||| |||||  |  ||||| ||||||| |
Sbjct: 7344729 atgaaggacccgaacgcaggtatgaaggatgccaccacagacaggatagttaccatgacg 7344670

                                                                           
Query: 473     atgcggctcgagtgcaggcctagccattcggcgccaggaacaccgtgggaaagcttctgg 532
               |||||||| ||||||||||| | |||||| || ||  ||||   ||| || |||||| ||
Sbjct: 7344669 atgcggcttgagtgcaggcccacccattcagccccgcgaaccttgtgcgagagcttcggg 7344610

                                                                           
Query: 533     aagcatccacttgatctgaacctcgcctccacaatctcatggatcgggtgcatcataact 592
               || ||||||||||||  ||| ||  |||| |||||||| ||||| ||||||||||| |||
Sbjct: 7344609 aaacatccacttgattggaatctttcctcgacaatctcgtggattgggtgcatcatgact 7344550

                                                                 
Query: 593     gggaatgtgaatgctagtgcaatgcataggccaacctgccagtagatttt 642
               || ||||||||| | ||||| ||||| || |||||||| ||| |||||||
Sbjct: 7344549 ggaaatgtgaataccagtgctatgcaaagaccaacctgtcagcagatttt 7344500



 Score = 48.1 bits (24), Expect = 0.042
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                   
Query: 272     gcaaaacccaggccaaagagaaggaagccgtagtcc 307
               |||||||| ||||| ||||||||||| |||||||||
Sbjct: 7344870 gcaaaaccaaggccgaagagaaggaaaccgtagtcc 7344835
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>dbj|AP005774.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBa0086N05
          Length = 163670

 Score =  170 bits (86), Expect = 4e-39
 Identities = 239/290 (82%)
 Strand = Plus / Minus

                                                                         
Query: 353   tggaagaaggtaggtagcacaaaggagagcagcgcacagactgtgcatccaacaaaggag 412
             |||||||  ||||| ||||| |||||||||||||| || || ||||  || |||||||||
Sbjct: 71470 tggaagatcgtaggcagcacgaaggagagcagcgcgcaaaccgtgctcccgacaaaggag 71411

                                                                         
Query: 413   acgaaggacccaaatgcaggtatgaaggatgccatcacagttaaaatagtaaccatgatg 472
             | ||||||||| || ||||||||||||||||||| |||||  |  ||||| ||||||| |
Sbjct: 71410 atgaaggacccgaacgcaggtatgaaggatgccaccacagacaggatagttaccatgacg 71351

                                                                         
Query: 473   atgcggctcgagtgcaggcctagccattcggcgccaggaacaccgtgggaaagcttctgg 532
             |||||||| ||||||||||| | |||||| || ||  ||||   ||| || |||||| ||
Sbjct: 71350 atgcggcttgagtgcaggcccacccattcagccccgcgaaccttgtgcgagagcttcggg 71291

                                                                         
Query: 533   aagcatccacttgatctgaacctcgcctccacaatctcatggatcgggtgcatcataact 592
             || ||||||||||||  ||| ||  |||| |||||||| ||||| ||||||||||| |||
Sbjct: 71290 aaacatccacttgattggaatctttcctcgacaatctcgtggattgggtgcatcatgact 71231

                                                               
Query: 593   gggaatgtgaatgctagtgcaatgcataggccaacctgccagtagatttt 642
             || ||||||||| | ||||| ||||| || |||||||| ||| |||||||
Sbjct: 71230 ggaaatgtgaataccagtgctatgcaaagaccaacctgtcagcagatttt 71181



 Score = 48.1 bits (24), Expect = 0.042
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                 
Query: 272   gcaaaacccaggccaaagagaaggaagccgtagtcc 307
             |||||||| ||||| ||||||||||| |||||||||
Sbjct: 71551 gcaaaaccaaggccgaagagaaggaaaccgtagtcc 71516
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>ref|XM_477191.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1275

 Score =  161 bits (81), Expect = 4e-36
 Identities = 228/277 (82%)
 Strand = Plus / Minus

                                                                        
Query: 353  tggaagaaggtaggtagcacaaaggagagcagcgcacagactgtgcatccaacaaaggag 412
            |||||||  ||||| ||||| |||||||||||||| || || ||||  || |||||||||
Sbjct: 1157 tggaagatcgtaggcagcacgaaggagagcagcgcgcaaaccgtgctcccgacaaaggag 1098

                                                                        
Query: 413  acgaaggacccaaatgcaggtatgaaggatgccatcacagttaaaatagtaaccatgatg 472
            | ||||||||| || ||||||||||||||||||| |||||  |  ||||| ||||||| |
Sbjct: 1097 atgaaggacccgaacgcaggtatgaaggatgccaccacagacaggatagttaccatgacg 1038

                                                                        
Query: 473  atgcggctcgagtgcaggcctagccattcggcgccaggaacaccgtgggaaagcttctgg 532
            |||||||| ||||||||||| | |||||| || ||  ||||   ||| || |||||| ||
Sbjct: 1037 atgcggcttgagtgcaggcccacccattcagccccgcgaaccttgtgcgagagcttcggg 978

                                                                        
Query: 533  aagcatccacttgatctgaacctcgcctccacaatctcatggatcgggtgcatcataact 592
            || ||||||||||||  ||| ||  |||| |||||||| ||||| ||||||||||| |||
Sbjct: 977  aaacatccacttgattggaatctttcctcgacaatctcgtggattgggtgcatcatgact 918

                                                 
Query: 593  gggaatgtgaatgctagtgcaatgcataggccaacct 629
            || ||||||||| | ||||| ||||| || |||||||
Sbjct: 917  ggaaatgtgaataccagtgctatgcaaagaccaacct 881



 Score = 48.1 bits (24), Expect = 0.042
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 272  gcaaaacccaggccaaagagaaggaagccgtagtcc 307
            |||||||| ||||| ||||||||||| |||||||||
Sbjct: 1238 gcaaaaccaaggccgaagagaaggaaaccgtagtcc 1203
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>dbj|AK105808.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-203-B09, full
            insert sequence
          Length = 1381

 Score =  161 bits (81), Expect = 4e-36
 Identities = 228/277 (82%)
 Strand = Plus / Minus

                                                                        
Query: 353  tggaagaaggtaggtagcacaaaggagagcagcgcacagactgtgcatccaacaaaggag 412
            |||||||  ||||| ||||| |||||||||||||| || || ||||  || |||||||||
Sbjct: 1012 tggaagatcgtaggcagcacgaaggagagcagcgcgcaaaccgtgctcccgacaaaggag 953

                                                                        
Query: 413  acgaaggacccaaatgcaggtatgaaggatgccatcacagttaaaatagtaaccatgatg 472
            | ||||||||| || ||||||||||||||||||| |||||  |  ||||| ||||||| |
Sbjct: 952  atgaaggacccgaacgcaggtatgaaggatgccaccacagacaggatagttaccatgacg 893

                                                                        
Query: 473  atgcggctcgagtgcaggcctagccattcggcgccaggaacaccgtgggaaagcttctgg 532
            |||||||| ||||||||||| | |||||| || ||  ||||   ||| || |||||| ||
Sbjct: 892  atgcggcttgagtgcaggcccacccattcagccccgcgaaccttgtgcgagagcttcggg 833

                                                                        
Query: 533  aagcatccacttgatctgaacctcgcctccacaatctcatggatcgggtgcatcataact 592
            || ||||||||||||  ||| ||  |||| |||||||| ||||| ||||||||||| |||
Sbjct: 832  aaacatccacttgattggaatctttcctcgacaatctcgtggattgggtgcatcatgact 773

                                                 
Query: 593  gggaatgtgaatgctagtgcaatgcataggccaacct 629
            || ||||||||| | ||||| ||||| || |||||||
Sbjct: 772  ggaaatgtgaataccagtgctatgcaaagaccaacct 736



 Score = 48.1 bits (24), Expect = 0.042
 Identities = 33/36 (91%)
 Strand = Plus / Minus

                                                
Query: 272  gcaaaacccaggccaaagagaaggaagccgtagtcc 307
            |||||||| ||||| ||||||||||| |||||||||
Sbjct: 1093 gcaaaaccaaggccgaagagaaggaaaccgtagtcc 1058
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>gb|AY105589.1| Zea mays PCO140163 mRNA sequence
          Length = 670

 Score =  105 bits (53), Expect = 2e-19
 Identities = 77/85 (90%)
 Strand = Plus / Minus

                                                                       
Query: 545 gatctgaacctcgcctccacaatctcatggatcgggtgcatcataactgggaatgtgaat 604
           ||||||||||| | ||| || ||||||||||||||||||||||| |||||||| ||||||
Sbjct: 90  gatctgaaccttgtctcgacgatctcatggatcgggtgcatcatcactgggaaggtgaat 31

                                    
Query: 605 gctagtgcaatgcataggccaacct 629
           || ||||| ||||||||||||||||
Sbjct: 30  gccagtgcgatgcataggccaacct 6



 Score = 73.8 bits (37), Expect = 7e-10
 Identities = 115/141 (81%)
 Strand = Plus / Minus

                                                                       
Query: 247 gagagcagtgaatattccataaccagcaaaacccaggccaaagagaaggaagccgtagtc 306
           |||||||||||  |  ||||| ||||| ||| |||| ||||||||||||| |||||||||
Sbjct: 388 gagagcagtgacaagaccatatccagcgaaagccagaccaaagagaaggatgccgtagtc 329

                                                                       
Query: 307 cagcactcttctccatatgctcattgacgatcctacaatgttgaggtggaagaaggtagg 366
           |||||| |  ||||| | |   |||||||| ||||||||| |||| |||||||  |  ||
Sbjct: 328 cagcacccgcctccacaagggtattgacgagcctacaatgctgagatggaagagagacgg 269

                                
Query: 367 tagcacaaaggagagcagcgc 387
            |||||||||||||| |||||
Sbjct: 268 cagcacaaaggagagaagcgc 248
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>ref|XM_470106.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1283

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                          
Query: 556 cgcctccacaatctcatggatcgggtgcatcataactgggaatgtga 602
           ||||||||| ||||| ||||||||||||||||| || ||||| ||||
Sbjct: 983 cgcctccacgatctcgtggatcgggtgcatcatcaccgggaacgtga 937
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                               
Query: 556      cgcctccacaatctcatggatcgggtgcatcataactgggaatgtga 602
                ||||||||| ||||| ||||||||||||||||| || ||||| ||||
Sbjct: 33968662 cgcctccacgatctcgtggatcgggtgcatcatcaccgggaacgtga 33968616
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 42/47 (89%)
 Strand = Plus / Minus

                                                               
Query: 556      cgcctccacaatctcatggatcgggtgcatcataactgggaatgtga 602
                ||||||||| ||||| ||||||||||||||||| || ||||| ||||
Sbjct: 34059134 cgcctccacgatctcgtggatcgggtgcatcatcaccgggaacgtga 34059088
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>gb|AC133007.4| Oryza sativa chromosome 3 BAC OSJNBa0094J08 genomic sequence, complete
             sequence
          Length = 172337

 Score = 54.0 bits (27), Expect = 7e-04
 Identities = 42/47 (89%)
 Strand = Plus / Plus

                                                            
Query: 556   cgcctccacaatctcatggatcgggtgcatcataactgggaatgtga 602
             ||||||||| ||||| ||||||||||||||||| || ||||| ||||
Sbjct: 89029 cgcctccacgatctcgtggatcgggtgcatcatcaccgggaacgtga 89075
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>gb|AC113352.2| Homo sapiens chromosome 5 clone CTD-2613O8, complete sequence
          Length = 133668

 Score = 46.1 bits (23), Expect = 0.17
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 388   acagactgtgcatccaacaaagg 410
             |||||||||||||||||||||||
Sbjct: 95805 acagactgtgcatccaacaaagg 95783
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>gb|AC139214.12| Mus musculus chromosome 17, clone RP23-345D6, complete sequence
          Length = 286283

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 242    gacgggagagcagtgaatattc 263
              ||||||||||||||||||||||
Sbjct: 131413 gacgggagagcagtgaatattc 131392
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>emb|AL359885.19| Human DNA sequence from clone RP11-346E8 on chromosome Xq21.1-21.31
             Contains a novel pseudogene, complete sequence
          Length = 76797

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 389   cagactgtgcatccaacaaagg 410
             ||||||||||||||||||||||
Sbjct: 45683 cagactgtgcatccaacaaagg 45662
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>gb|AC093661.4| Homo sapiens BAC clone RP11-472K22 from 4, complete sequence
          Length = 152381

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 388   acagactgtgcatccaacaaag 409
             ||||||||||||||||||||||
Sbjct: 65719 acagactgtgcatccaacaaag 65698
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>gb|CP000084.1| Candidatus Pelagibacter ubique HTCC1062, complete genome
          Length = 1308759

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                            
Query: 696    caatgaattttacaatttttcaaatctcac 725
              ||||||||||||| ||||||||||| ||||
Sbjct: 679027 caatgaattttactatttttcaaatatcac 678998
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>dbj|AK121940.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033107D18, full
           insert sequence
          Length = 1515

 Score = 44.1 bits (22), Expect = 0.66
 Identities = 40/46 (86%)
 Strand = Plus / Minus

                                                         
Query: 557 gcctccacaatctcatggatcgggtgcatcataactgggaatgtga 602
           |||| ||| ||||| ||||||||||||||||| || ||||| ||||
Sbjct: 995 gccttcacgatctcgtggatcgggtgcatcatcaccgggaacgtga 950
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>gb|AC161276.2| Pan troglodytes BAC clone CH251-520C21 from chromosome 7, complete
             sequence
          Length = 210088

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 387   cacagactgtgcatccaacaaagga 411
             |||| ||||||||||||||||||||
Sbjct: 54754 cacaaactgtgcatccaacaaagga 54730
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>gb|AC002127.1| Homo sapiens BAC clone CTA-305H12 from 7, complete sequence
          Length = 144165

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 387   cacagactgtgcatccaacaaagga 411
             |||| ||||||||||||||||||||
Sbjct: 44205 cacaaactgtgcatccaacaaagga 44229
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>emb|AL357512.15| Human DNA sequence from clone RP11-541J2 on chromosome 1 Contains a
              nicotinamide nucleotide adenylyltransferase 1 (NMNAT1)
              pseudogene and a high-mobility group box 3 (HMGB3)
              pseudogene, complete sequence
          Length = 184024

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 387    cacagactgtgcatccaacaaagga 411
              |||| ||||||||||||||||||||
Sbjct: 169805 cacaaactgtgcatccaacaaagga 169781
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>emb|AL078581.11|HSDJ12G14 Human DNA sequence from clone RP1-12G14 on chromosome 6q24.1-25.2
             Contains the 5' end of the PPIL4 gene for peptidylprolyl
             isomerase (cyclophilin)-like 4 (HDCME13P ), a novel gene
             (LOC116254), a ribosomal protein S18 (RPS18) pseudogene,
             the KATNA1 gene for katanin p60 (ATPase-containing)
             subunit A 1, three novel genes and two CpG islands,
             complete sequence
          Length = 102019

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 387   cacagactgtgcatccaacaaagga 411
             |||| ||||||||||||||||||||
Sbjct: 32167 cacaaactgtgcatccaacaaagga 32191
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>gb|AC091944.2| Homo sapiens chromosome 5 clone RP11-348M17, complete sequence
          Length = 194624

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 387    cacagactgtgcatccaacaaagga 411
              |||| ||||||||||||||||||||
Sbjct: 148902 cacaaactgtgcatccaacaaagga 148926
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>gb|AC079950.23| Homo sapiens 12q BAC RP11-575A21 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 135123

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 387    cacagactgtgcatccaacaaagga 411
              |||| ||||||||||||||||||||
Sbjct: 130961 cacaaactgtgcatccaacaaagga 130937
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>gb|AC011413.3| Homo sapiens chromosome 5 clone CTB-82M23, complete sequence
          Length = 136365

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 305   tccagcactcttctccatatg 325
             |||||||||||||||||||||
Sbjct: 34801 tccagcactcttctccatatg 34781
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>gb|AC011347.6| Homo sapiens chromosome 5 clone CTC-295J22, complete sequence
          Length = 163167

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 305    tccagcactcttctccatatg 325
              |||||||||||||||||||||
Sbjct: 135670 tccagcactcttctccatatg 135650
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>gb|AC097648.2| Homo sapiens BAC clone RP11-63H19 from 4, complete sequence
          Length = 170289

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 387    cacagactgtgcatccaacaaagga 411
              |||| ||||||||||||||||||||
Sbjct: 123235 cacaaactgtgcatccaacaaagga 123259
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>emb|BX640542.3| Human DNA sequence from clone RP13-109G9 on chromosome 1, complete
              sequence
          Length = 157207

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 305    tccagcactcttctccatatg 325
              |||||||||||||||||||||
Sbjct: 142024 tccagcactcttctccatatg 142004
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>dbj|BS000179.1| Pan troglodytes chromosome 22 clone:RP43-082J09, map 22, complete
              sequences
          Length = 184352

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 212    acattttgtcattaattcatc 232
              |||||||||||||||||||||
Sbjct: 149337 acattttgtcattaattcatc 149357
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>dbj|AP002791.3| Homo sapiens genomic DNA, chromosome 11q clone:RP11-843F11, complete
             sequences
          Length = 172914

 Score = 42.1 bits (21), Expect = 2.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 387   cacagactgtgcatccaacaaagga 411
             |||| ||||||||||||||||||||
Sbjct: 72818 cacaaactgtgcatccaacaaagga 72842


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7,096,270
Number of Sequences: 3902068
Number of extensions: 7096270
Number of successful extensions: 132113
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 131917
Number of HSP's gapped (non-prelim): 191
length of query: 753
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 730
effective length of database: 17,143,297,704
effective search space: 12514607323920
effective search space used: 12514607323920
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)
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