ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27i16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1STAT1_PIG (Q764M5) Signal transducer and activator of transcript... 32 2.7
2STAT1_HUMAN (P42224) Signal transducer and activator of transcri... 32 2.7
3PLMN_HUMAN (P00747) Plasminogen precursor (EC 3.4.21.7) [Contain... 30 6.1
4DHN1_HORVU (P12951) Dehydrin DHN1 (B8) 30 6.1
5DHN2_HORVU (P12952) Dehydrin DHN2 (B9) 30 6.1
6PLMN_MACMU (P12545) Plasminogen precursor (EC 3.4.21.7) [Contain... 30 7.9
7TRPG_CAEEL (Q93971) Transient receptor potential channel (Abnorm... 30 7.9

>STAT1_PIG (Q764M5) Signal transducer and activator of transcription 1|
          Length = 757

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = +1

Query: 442 LPGPVGQGYILVEYISVARVRPRTSKGITDLLLPQT 549
           L GP G GYI  E ISV+ V P   +  TD LLP +
Sbjct: 693 LDGPKGTGYIKTELISVSEVHPSRLQ-TTDNLLPMS 727



to top

>STAT1_HUMAN (P42224) Signal transducer and activator of transcription|
           1-alpha/beta (Transcription factor ISGF-3 components
           p91/p84)
          Length = 750

 Score = 31.6 bits (70), Expect = 2.7
 Identities = 18/36 (50%), Positives = 21/36 (58%)
 Frame = +1

Query: 442 LPGPVGQGYILVEYISVARVRPRTSKGITDLLLPQT 549
           L GP G GYI  E ISV+ V P   +  TD LLP +
Sbjct: 693 LDGPKGTGYIKTELISVSEVHPSRLQ-TTDNLLPMS 727



to top

>PLMN_HUMAN (P00747) Plasminogen precursor (EC 3.4.21.7) [Contains: Plasmin|
           heavy chain A; Activation peptide; Angiostatin; Plasmin
           heavy chain A, short form; Plasmin light chain B]
          Length = 810

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = -2

Query: 205 GEVVTRFP*VNLRKDHCRDPDQN-RP-CSRHPILRRW 101
           G + ++FP  NL+K++CR+PD+  RP C      +RW
Sbjct: 218 GYIPSKFPNKNLKKNYCRNPDRELRPWCFTTDPNKRW 254



to top

>DHN1_HORVU (P12951) Dehydrin DHN1 (B8)|
          Length = 139

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = -3

Query: 105 DGIVRRSANSSTASTPRSGGSGKRTHG-AEGVKKK 4
           DG++RRS +SS++S+   G  G+R  G  E +K+K
Sbjct: 55  DGVLRRSGSSSSSSSEDDGVGGRRKKGMKEKIKEK 89



to top

>DHN2_HORVU (P12952) Dehydrin DHN2 (B9)|
          Length = 143

 Score = 30.4 bits (67), Expect = 6.1
 Identities = 15/35 (42%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
 Frame = -3

Query: 105 DGIVRRSANSSTASTPRSGGSGKRTHG-AEGVKKK 4
           DG++RRS +SS++S+   G  G+R  G  E +K+K
Sbjct: 58  DGVLRRSGSSSSSSSEDDGVGGRRKKGMKEKIKEK 92



to top

>PLMN_MACMU (P12545) Plasminogen precursor (EC 3.4.21.7) [Contains: Plasmin|
           heavy chain A; Activation peptide; Plasmin heavy chain
           A, short form; Plasmin light chain B]
          Length = 810

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = -2

Query: 205 GEVVTRFP*VNLRKDHCRDPD-QNRP-CSRHPILRRW 101
           G + ++FP  NL+K++CR+PD + RP C      +RW
Sbjct: 218 GYIPSKFPNKNLKKNYCRNPDGEPRPWCFTTDPNKRW 254



to top

>TRPG_CAEEL (Q93971) Transient receptor potential channel (Abnormal gonad|
           development protein 2)
          Length = 2032

 Score = 30.0 bits (66), Expect = 7.9
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +3

Query: 255 RTAPVAAIRTLHRTIQSVGATGGVYKGQGRSQRELMTRA 371
           RTAP+   R  HR  +S   TGGVY  +G   R L+  A
Sbjct: 124 RTAPIKKTRK-HRRRRSGSFTGGVYPRKGHRNRSLLGHA 161


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101,862,159
Number of Sequences: 219361
Number of extensions: 2061004
Number of successful extensions: 4565
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4564
length of database: 80,573,946
effective HSP length: 109
effective length of database: 56,663,597
effective search space used: 7819576386
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top