ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbasd27i14 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_475575.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1230 Score = 127 bits (64), Expect = 5e-26 Identities = 184/224 (82%) Strand = Plus / Minus Query: 173 ctatggtgccaacatcacccaagcctacaccaatgcagatgggactgttcttctgtacag 232 |||||||||||||||| | || |||| || ||| ||| |||| | ||||||||| ||| Sbjct: 1180 ctatggtgccaacatcctctaacactactccgatgaagaggggattcttcttctgtgcag 1121 Query: 233 agccctcactccgaagccgcacatttgggcccagaccgcatttccccaagcatttgcatc 292 ||| || ||||| ||||||||||| ||||| |||||||||||||||| ||||||||| | Sbjct: 1120 cgccttcgctccggagccgcacattcgggcctagaccgcatttccccaggcatttgcagc 1061 Query: 293 cgaccaccgtgccgcccatgccaagctccgtctcaaactcctgcaggacggcaagcgagc 352 | || |||| || | |||| | || | |||| ||||||||||| || || || |||| Sbjct: 1060 caacgaccgcaccatcagtgcccaccttcttctcgaactcctgcagcaccgcgagggagc 1001 Query: 353 ccgccttcttgcatttgccacccatgcagacctcaattctgttc 396 ||| |||||||||||||| |||||||||||||||||||||||| Sbjct: 1000 ccgatttcttgcatttgcctcccatgcagacctcaattctgttc 957
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 127 bits (64), Expect = 5e-26 Identities = 184/224 (82%) Strand = Plus / Minus Query: 173 ctatggtgccaacatcacccaagcctacaccaatgcagatgggactgttcttctgtacag 232 |||||||||||||||| | || |||| || ||| ||| |||| | ||||||||| ||| Sbjct: 2113587 ctatggtgccaacatcctctaacactactccgatgaagaggggattcttcttctgtgcag 2113528 Query: 233 agccctcactccgaagccgcacatttgggcccagaccgcatttccccaagcatttgcatc 292 ||| || ||||| ||||||||||| ||||| |||||||||||||||| ||||||||| | Sbjct: 2113527 cgccttcgctccggagccgcacattcgggcctagaccgcatttccccaggcatttgcagc 2113468 Query: 293 cgaccaccgtgccgcccatgccaagctccgtctcaaactcctgcaggacggcaagcgagc 352 | || |||| || | |||| | || | |||| ||||||||||| || || || |||| Sbjct: 2113467 caacgaccgcaccatcagtgcccaccttcttctcgaactcctgcagcaccgcgagggagc 2113408 Query: 353 ccgccttcttgcatttgccacccatgcagacctcaattctgttc 396 ||| |||||||||||||| |||||||||||||||||||||||| Sbjct: 2113407 ccgatttcttgcatttgcctcccatgcagacctcaattctgttc 2113364
>gb|AC093490.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1127_B08, complete sequence Length = 112268 Score = 127 bits (64), Expect = 5e-26 Identities = 184/224 (82%) Strand = Plus / Minus Query: 173 ctatggtgccaacatcacccaagcctacaccaatgcagatgggactgttcttctgtacag 232 |||||||||||||||| | || |||| || ||| ||| |||| | ||||||||| ||| Sbjct: 80428 ctatggtgccaacatcctctaacactactccgatgaagaggggattcttcttctgtgcag 80369 Query: 233 agccctcactccgaagccgcacatttgggcccagaccgcatttccccaagcatttgcatc 292 ||| || ||||| ||||||||||| ||||| |||||||||||||||| ||||||||| | Sbjct: 80368 cgccttcgctccggagccgcacattcgggcctagaccgcatttccccaggcatttgcagc 80309 Query: 293 cgaccaccgtgccgcccatgccaagctccgtctcaaactcctgcaggacggcaagcgagc 352 | || |||| || | |||| | || | |||| ||||||||||| || || || |||| Sbjct: 80308 caacgaccgcaccatcagtgcccaccttcttctcgaactcctgcagcaccgcgagggagc 80249 Query: 353 ccgccttcttgcatttgccacccatgcagacctcaattctgttc 396 ||| |||||||||||||| |||||||||||||||||||||||| Sbjct: 80248 ccgatttcttgcatttgcctcccatgcagacctcaattctgttc 80205
>dbj|AK067812.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013114P12, full insert sequence Length = 1497 Score = 121 bits (61), Expect = 3e-24 Identities = 148/177 (83%) Strand = Plus / Minus Query: 220 ttcttctgtacagagccctcactccgaagccgcacatttgggcccagaccgcatttcccc 279 ||||||||| ||| ||| || ||||| ||||||||||| ||||| ||||||||||||||| Sbjct: 1245 ttcttctgtgcagcgccttcgctccggagccgcacattcgggcctagaccgcatttcccc 1186 Query: 280 aagcatttgcatccgaccaccgtgccgcccatgccaagctccgtctcaaactcctgcagg 339 | ||||||||| || || |||| || | |||| | || | |||| ||||||||||| Sbjct: 1185 aggcatttgcagccaacgaccgcaccatcagtgcccaccttcttctcgaactcctgcagc 1126 Query: 340 acggcaagcgagcccgccttcttgcatttgccacccatgcagacctcaattctgttc 396 || || || ||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct: 1125 accgcgagggagcccgatttcttgcatttgcctcccatgcagacctcaattctgttc 1069
>gb|AY104219.1| Zea mays PCO130396 mRNA sequence Length = 960 Score = 69.9 bits (35), Expect = 1e-08 Identities = 62/71 (87%) Strand = Plus / Minus Query: 323 tctcaaactcctgcaggacggcaagcgagcccgccttcttgcatttgccacccatgcaga 382 |||| ||||||||||| | |||| || ||| | ||||||||||||||| |||||||||| Sbjct: 545 tctcgaactcctgcagaagagcaaccgcgcctgacttcttgcatttgccccccatgcaga 486 Query: 383 cctcaattctg 393 ||||||||||| Sbjct: 485 cctcaattctg 475 Score = 46.1 bits (23), Expect = 0.14 Identities = 38/43 (88%) Strand = Plus / Minus Query: 169 gccactatggtgccaacatcacccaagcctacaccaatgcaga 211 ||||| |||||||||||||| | ||||||||||| ||||||| Sbjct: 708 gccacgatggtgccaacatcttcaaagcctacaccgatgcaga 666
>gb|AF123432.1|AF123432 Bovine enterovirus isolate K2577, complete genome Length = 7405 Score = 46.1 bits (23), Expect = 0.14 Identities = 23/23 (100%) Strand = Plus / Plus Query: 116 caggtccaggttcgtatcagttc 138 ||||||||||||||||||||||| Sbjct: 1780 caggtccaggttcgtatcagttc 1802
>emb|Z58203.1|HS32A8F H.sapiens CpG island DNA genomic Mse1 fragment, clone 32a8, forward read cpg32a8.ft1a Length = 270 Score = 44.1 bits (22), Expect = 0.57 Identities = 22/22 (100%) Strand = Plus / Minus Query: 584 ccccttcacactcactgttgct 605 |||||||||||||||||||||| Sbjct: 90 ccccttcacactcactgttgct 69
>emb|BX470072.8| Zebrafish DNA sequence from clone DKEY-163I6 in linkage group 21, complete sequence Length = 211164 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 392 tgttcagcactggtttttcaa 412 ||||||||||||||||||||| Sbjct: 195523 tgttcagcactggtttttcaa 195503
>ref|XM_522895.1| PREDICTED: Pan troglodytes similar to mixed-lineage protein kinase 1 (LOC467498), mRNA Length = 3750 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 587 cttcacactcactgttgctggact 610 ||||| |||||||||||||||||| Sbjct: 835 cttcatactcactgttgctggact 812
>ref|NM_001005508.1| Mus musculus Rho GTPase activating protein 30 (Arhgap30), mRNA Length = 4457 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 gctccgtctcaaactcctgc 336 |||||||||||||||||||| Sbjct: 475 gctccgtctcaaactcctgc 456
>gb|AC125082.3| Mus musculus BAC clone RP24-90M24 from chromosome 10, complete sequence Length = 226256 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 367 ttgccacccatgcagacctcaattctgt 394 |||||||||| || |||||||||||||| Sbjct: 219401 ttgccacccaggctgacctcaattctgt 219428
>gb|AC124445.4| Mus musculus BAC clone RP24-191B18 from chromosome 10, complete sequence Length = 190295 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 367 ttgccacccatgcagacctcaattctgt 394 |||||||||| || |||||||||||||| Sbjct: 117983 ttgccacccaggctgacctcaattctgt 117956
>gb|AC132260.3| Mus musculus BAC clone RP24-370C1 from chromosome 13, complete sequence Length = 160903 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 catttgccagacaaaacaag 78 |||||||||||||||||||| Sbjct: 3216 catttgccagacaaaacaag 3197
>gb|AC125223.3| Mus musculus BAC clone RP23-31C10 from 13, complete sequence Length = 221903 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 59 catttgccagacaaaacaag 78 |||||||||||||||||||| Sbjct: 218079 catttgccagacaaaacaag 218060
>emb|Z83836.2|HS111J24 Human DNA sequence from clone RP1-111J24 on chromosome 22 Contains GSSs, complete sequence Length = 119008 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 626 tgtcttcatccttgcaggaattca 649 |||| ||||||||||||||||||| Sbjct: 47642 tgtcatcatccttgcaggaattca 47665
>gb|CP000300.1| Methanococcoides burtonii DSM 6242, complete genome Length = 2575032 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 94 tcttgtaaataccaacctga 113 |||||||||||||||||||| Sbjct: 919694 tcttgtaaataccaacctga 919713
>emb|AL355499.15| Human DNA sequence from clone RP11-328K6 on chromosome 6 Contains the 5' end of the EEF1E1 gene for eukaryotic translation elongation factor 1 epsilon 1 and a CpG island, complete sequence Length = 198141 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 59 catttgccagacaaaacaag 78 |||||||||||||||||||| Sbjct: 169203 catttgccagacaaaacaag 169222
>emb|AL662963.3|OSJN00163 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02, complete sequence Length = 172435 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 caacaaccgcaatgctggtg 429 |||||||||||||||||||| Sbjct: 40185 caacaaccgcaatgctggtg 40204
>emb|AL161946.1|ATF7A7 Arabidopsis thaliana DNA chromosome 5, BAC clone F7A7 (ESSA project) Length = 86690 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 66 cagacaaaacaagttgtagtagta 89 |||||||||||||| ||||||||| Sbjct: 60060 cagacaaaacaagtagtagtagta 60037
>gb|BC082573.1| Mus musculus Rho GTPase activating protein 30, mRNA (cDNA clone MGC:99989 IMAGE:30548035), complete cds Length = 4457 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 gctccgtctcaaactcctgc 336 |||||||||||||||||||| Sbjct: 475 gctccgtctcaaactcctgc 456
>emb|BX539313.4| Zebrafish DNA sequence from clone DKEYP-84F3 in linkage group 16, complete sequence Length = 215158 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 496 atttgaggcactatgatggg 515 |||||||||||||||||||| Sbjct: 126222 atttgaggcactatgatggg 126203
>gb|L10986.2| Caenorhabditis elegans cosmid F10E9, complete sequence Length = 47233 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 acaaaacaagttgtagtagt 88 |||||||||||||||||||| Sbjct: 23411 acaaaacaagttgtagtagt 23430
>dbj|AK147757.1| Mus musculus melanocyte cDNA, RIKEN full-length enriched library, clone:G270026A07 product:similar to Cdc42 GTPase-activating protein (Fragment) [Homo sapiens], full insert sequence Length = 4646 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 gctccgtctcaaactcctgc 336 |||||||||||||||||||| Sbjct: 534 gctccgtctcaaactcctgc 515
>dbj|AK031319.1| Mus musculus 13 days embryo male testis cDNA, RIKEN full-length enriched library, clone:6030405P05 product:hypothetical RhoGAP domain containing protein, full insert sequence Length = 2262 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 gctccgtctcaaactcctgc 336 |||||||||||||||||||| Sbjct: 298 gctccgtctcaaactcctgc 279
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 caacaaccgcaatgctggtg 429 |||||||||||||||||||| Sbjct: 16510952 caacaaccgcaatgctggtg 16510971
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 cgccttcttgcatttgccac 373 |||||||||||||||||||| Sbjct: 35759132 cgccttcttgcatttgccac 35759151
>gb|AC009742.4|AC009742 Drosophila melanogaster, chromosome 3R, region 90C-90C, BAC clone BACR21K03, complete sequence Length = 178100 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 ggtcttgtaaataccaacct 111 |||||||||||||||||||| Sbjct: 177130 ggtcttgtaaataccaacct 177149
>gb|AC007810.6|AC007810 Drosophila melanogaster, chromosome 3R, region 90C-90C, BAC clone BACR14A01, complete sequence Length = 176735 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 ggtcttgtaaataccaacct 111 |||||||||||||||||||| Sbjct: 71011 ggtcttgtaaataccaacct 71030
>gb|AF322012.1|AF322012S1 Bradyrhizobium japonicum symbiotic gene region, part 1 of 2 Length = 180000 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 aactcctgcaggacggcaag 347 |||||||||||||||||||| Sbjct: 159415 aactcctgcaggacggcaag 159396
>gb|AC004816.1|AC004816 Homo sapiens PAC clone RP6-65G23 from 14q24.3, complete sequence Length = 166200 Score = 40.1 bits (20), Expect = 8.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 587 cttcacactcactgttgctggact 610 ||||| |||||||||||||||||| Sbjct: 26718 cttcatactcactgttgctggact 26695
>gb|AY943294.1| Hordeum vulgare subsp. vulgare clone BAC 673I14, complete sequence Length = 108608 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 514 gggaaaactgtgcttgcagg 533 |||||||||||||||||||| Sbjct: 89666 gggaaaactgtgcttgcagg 89685
>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome Length = 9105828 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 aactcctgcaggacggcaag 347 |||||||||||||||||||| Sbjct: 2037900 aactcctgcaggacggcaag 2037881
>dbj|AP004082.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1149_C12 Length = 120743 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 354 cgccttcttgcatttgccac 373 |||||||||||||||||||| Sbjct: 29847 cgccttcttgcatttgccac 29866
>dbj|AK109486.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-202-H07, full insert sequence Length = 912 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 caacaaccgcaatgctggtg 429 |||||||||||||||||||| Sbjct: 638 caacaaccgcaatgctggtg 657
>dbj|AK101242.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033031P14, full insert sequence Length = 830 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 410 caacaaccgcaatgctggtg 429 |||||||||||||||||||| Sbjct: 552 caacaaccgcaatgctggtg 571
>gb|AE003719.3| Drosophila melanogaster chromosome 3R, section 57 of 118 of the complete sequence Length = 212941 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 ggtcttgtaaataccaacct 111 |||||||||||||||||||| Sbjct: 24233 ggtcttgtaaataccaacct 24252
>gb|DQ332917.1| Synthetic construct Saccharomyces cerevisiae clone FLH006691.01X UBP16 gene, complete sequence Length = 1500 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 44 aaagatgtagtagtacatttgccagaca 71 ||||||||||||||||| ||||||||| Sbjct: 997 aaagatgtagtagtacaactgccagaca 1024
>gb|U41849.1|SCU41849 Saccharomyces cerevisiae chromosome XVI, left arm, cosmid 8204 Length = 35868 Score = 40.1 bits (20), Expect = 8.9 Identities = 26/28 (92%) Strand = Plus / Plus Query: 44 aaagatgtagtagtacatttgccagaca 71 ||||||||||||||||| ||||||||| Sbjct: 32492 aaagatgtagtagtacaactgccagaca 32519
>gb|AC087229.27| Mus musculus strain C57BL/6J chromosome 1 clone rp23-191a19, complete sequence Length = 215043 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 317 gctccgtctcaaactcctgc 336 |||||||||||||||||||| Sbjct: 145947 gctccgtctcaaactcctgc 145928
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 531 aggtggtgttcgaggcgcag 550 |||||||||||||||||||| Sbjct: 2175789 aggtggtgttcgaggcgcag 2175808
>gb|M59242.1|RHBRPON1 Bradyrhizobium japonicum RNA polymerase sigma-54 subunit (ropN1) gene, complete cds Length = 1738 Score = 40.1 bits (20), Expect = 8.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 328 aactcctgcaggacggcaag 347 |||||||||||||||||||| Sbjct: 714 aactcctgcaggacggcaag 695 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,620,446 Number of Sequences: 3902068 Number of extensions: 5620446 Number of successful extensions: 274921 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 274692 Number of HSP's gapped (non-prelim): 226 length of query: 649 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 626 effective length of database: 17,143,297,704 effective search space: 10731704362704 effective search space used: 10731704362704 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
