ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbasd27i12
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GSTT2_DROME (Q9VG98) Glutathione S-transferase D2 (EC 2.5.1.18) ... 33 0.17
2GSTT5_DROME (Q9VG95) Glutathione S-transferase D5 (EC 2.5.1.18) ... 30 1.4
3COHA1_CHICK (Q90584) Collagen alpha-1(XVII) chain (Bullous pemph... 28 4.2
4Y022_THEAC (Q9HM47) UPF0204 protein Ta0022 28 4.2
5YSO2_CAEEL (Q10128) Hypothetical protein F56D1.2 precursor 28 5.5
6CI010_HUMAN (Q9NZB2) Protein C9orf10 28 5.5
7CCRK_RAT (Q4KM34) Cell cycle-related kinase (EC 2.7.11.22) 28 7.1
8CCRK_MOUSE (Q9JHU3) Cell cycle-related kinase (EC 2.7.11.22) (Cy... 28 7.1
9DIP2A_MOUSE (Q8BWT5) Disco-interacting protein 2 homolog A 27 9.3
10EP400_MOUSE (Q8CHI8) E1A-binding protein p400 (EC 3.6.1.-) (p400... 27 9.3
11GSTT4_DROME (Q9VG96) Glutathione S-transferase D4 (EC 2.5.1.18) ... 27 9.3

>GSTT2_DROME (Q9VG98) Glutathione S-transferase D2 (EC 2.5.1.18) (DmGST21)|
          Length = 215

 Score = 33.1 bits (74), Expect = 0.17
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
 Frame = +3

Query: 93  MLNTTEGSLLQPQIVKRDTDR*IDRLSFSGHYEWAGR-----LISSHSSSDQILPAHP 251
           +LNT EG  L+P+ VK +    I  L  +G   W  R     L+  +   D +LP  P
Sbjct: 30  LLNTMEGEQLKPEFVKLNPQHTIPTLVDNGFSIWESRAIAVYLVEKYGKDDYLLPNDP 87



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>GSTT5_DROME (Q9VG95) Glutathione S-transferase D5 (EC 2.5.1.18) (DmGST24)|
          Length = 216

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 5/61 (8%)
 Frame = +3

Query: 93  MLNTTEGSLLQPQIVKRDTDR*IDRLSFSGHYEWAGR-----LISSHSSSDQILPAHPSG 257
           +LNT E   L+P+ VK +    I  L  +G   W  R     L+  +   D + P  P  
Sbjct: 30  LLNTLEKDQLKPEFVKLNPQHTIPTLVDNGFSIWESRAIAVYLVEKYGKDDTLFPKDPKK 89

Query: 258 Q 260
           Q
Sbjct: 90  Q 90



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>COHA1_CHICK (Q90584) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen|
           2) (180 kDa bullous pemphigoid antigen 2) (Fragment)
          Length = 1146

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +3

Query: 198 GRLISSHSSSDQILPAHPSGQPWPSAPSGP 287
           G++IS+  SS   LP  P G P P  P+GP
Sbjct: 389 GKVISAEGSSTIALPG-PPGPPGPIGPTGP 417



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>Y022_THEAC (Q9HM47) UPF0204 protein Ta0022|
          Length = 256

 Score = 28.5 bits (62), Expect = 4.2
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +3

Query: 168 LSFSGHYEWAGRLISSHSSSDQI--LPAHPSGQPWPSAPSG 284
           +S SG Y++   ++S HSS+  +  L AHP+G   PSA  G
Sbjct: 52  MSLSGKYDYLV-VLSRHSSAADVKSLTAHPTGNFGPSADLG 91



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>YSO2_CAEEL (Q10128) Hypothetical protein F56D1.2 precursor|
          Length = 718

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +2

Query: 62  RFQQPTATMHNAQHN*R*SVTTTDSEARHR*VDR*IIIFWALRMGRQTHFF 214
           +F Q TA +HN +H  R +VT   SEA+        I  W L   R   FF
Sbjct: 558 QFAQLTAFLHNVEHTERANVTQNISEAQ--------IHEWNLCASRMMSFF 600



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>CI010_HUMAN (Q9NZB2) Protein C9orf10|
          Length = 1069

 Score = 28.1 bits (61), Expect = 5.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 185 LRMGRQTHFFPLFFRPDPPSAPFWPALA 268
           L   RQ+H  P    P PP+ PF+PA A
Sbjct: 846 LSFSRQSHTLPF---PPPPALPFYPASA 870



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>CCRK_RAT (Q4KM34) Cell cycle-related kinase (EC 2.7.11.22)|
          Length = 346

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +3

Query: 237 LPAHPSGQPWPSAPSGP 287
           LPAHPS  P P  P GP
Sbjct: 293 LPAHPSELPIPQRPGGP 309



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>CCRK_MOUSE (Q9JHU3) Cell cycle-related kinase (EC 2.7.11.22)|
           (Cyclin-kinase-activating kinase p42) (CDK-activating
           kinase p42) (CAK-kinase p42) (CDK-related protein kinase
           PNQLARE)
          Length = 346

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = +3

Query: 237 LPAHPSGQPWPSAPSGP 287
           LPAHPS  P P  P GP
Sbjct: 293 LPAHPSELPIPQRPGGP 309



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>DIP2A_MOUSE (Q8BWT5) Disco-interacting protein 2 homolog A|
          Length = 1523

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = +3

Query: 171 SFSGHYEWAGRLI--SSHSSSDQILPAHPSGQPWPSAPSGPFA 293
           S SG   W  R+I  SS SSS     +HP G+P  +APS   A
Sbjct: 119 SHSGIEPWLDRVIQGSSTSSSASSTSSHPGGRP-AAAPSASTA 160



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>EP400_MOUSE (Q8CHI8) E1A-binding protein p400 (EC 3.6.1.-) (p400 kDa|
           SWI2/SNF2-related protein) (Domino homolog) (mDomino)
          Length = 3072

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +3

Query: 213 SHSSSDQILPAHPSGQPWPSAPSGPFA 293
           S + S++  PAHP+  P P+AP  P A
Sbjct: 19  SFTGSEEEQPAHPNLPPSPAAPFAPSA 45



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>GSTT4_DROME (Q9VG96) Glutathione S-transferase D4 (EC 2.5.1.18) (DmGST23)|
          Length = 215

 Score = 27.3 bits (59), Expect = 9.3
 Identities = 16/57 (28%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
 Frame = +3

Query: 96  LNTTEGSLLQPQIVKRDTDR*IDRLSFSGHYEWAGR-----LISSHSSSDQILPAHP 251
           L  TEG  L+P+ +K +    I  L  +G   W  R     L+  +   D + P  P
Sbjct: 31  LRITEGEHLKPEFLKLNPQHTIPTLVDNGFAIWESRAIAVYLVEKYGKDDSLFPNDP 87


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,790,317
Number of Sequences: 219361
Number of extensions: 681758
Number of successful extensions: 2418
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 2110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2403
length of database: 80,573,946
effective HSP length: 98
effective length of database: 59,076,568
effective search space used: 1417837632
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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